HHsearch alignment of GI: 254780148 and MMDB domain: 3ewg_A_
>3ewg_A (A:) NUSG, NGN, putative transcription antitermination protein NUSG; alpha/beta structure, antiparallel beta sheet; 2.04A {Methanocaldococcus jannaschii}
Probab=97.96 E-value=6.8e-06 Score=54.93 Aligned_cols=79 Identities=29% Similarity=0.444 Sum_probs=60.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCCEE
Q ss_conf 89995288538999999999997798111432663131012772020356641203309999996186522444203303
Q gi|254780148|r 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85 (177)
Q Consensus 6 yvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV 85 (177)
|+++|++|+|+.++..|.++....+++ ++.+|+| +=+.|||||++....+....++..+++
T Consensus 3 ~~Vk~~~G~Er~va~~l~~k~~~~~l~--I~Sv~~~-----------------~~lkGyIyVEA~~~~~v~~ai~gi~~v 63 (91)
T 3ewg_A 3 FAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILAS-----------------ESLKGYVLVEAETKGDVEELIKGMPRV 63 (91)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEECC-----------------TTSTTEEEEEESCHHHHHHHHTTCTTE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCC--EEEEEEC-----------------CCCCEEEEEEECCHHHHHHHHHCCCCE
T ss_conf 999806983999999999985489986--6999944-----------------898279999969989999998636442
Q ss_pred EEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 66432788610025889999997
Q gi|254780148|r 86 IGFLGTGENPSPVTDSEIEHIMN 108 (177)
Q Consensus 86 ~~~l~~~~~P~~i~~~ei~~l~~ 108 (177)
.+. .+..+|-+||.+++.
T Consensus 64 ~~~-----~~~~vp~~Ei~~~L~ 81 (91)
T 3ewg_A 64 RGI-----VPGTIAIEEIEPLLT 81 (91)
T ss_dssp EEE-----CSSCCCGGGTTTTC-
T ss_pred ECC-----CCCCCCHHHHHHHCC
T ss_conf 321-----467528899986567