HHsearch results for GI: 254780148 and protein with PDBid: 1nz9_A
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=99.55 E-value=8.3e-15 Score=107.37 Aligned_cols=56 Identities=50% Similarity=0.841 Sum_probs=53.8
Q ss_pred CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf 12347897799951877897199999828898899999816870478856787123
Q gi|254780148|r 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 (177)
Q Consensus 120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek 175 (177)
...|++||.|+|++|||+|++|.|.++|.+++|++|+++||||.|+|+++++||||
T Consensus 2 ~v~F~~Gd~V~V~~GpF~g~~g~V~~i~~~~~rv~Vll~ifGr~t~vel~~~~veK 57 (58)
T 1nz9_A 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEECHHHEEC
T ss_conf 22306999999903689998999999918899999999944998237369899870