HHsearch results for GI: 254780148 and protein with PDBid: 3lpe_A

>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=98.33  E-value=1.8e-06  Score=57.45  Aligned_cols=82  Identities=28%  Similarity=0.426  Sum_probs=63.8

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      +.-|+++|++|+|+.++..|.++....+++  ++.+++|                 +-+.|||||++....+....++..
T Consensus        10 ~~ifaVk~t~G~E~~va~~l~~k~~~~~l~--I~Si~~p-----------------~~lkGYIyVEA~~~~~V~~ai~gl   70 (92)
T 3lpe_A           10 HMIFAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILAS-----------------ESLKGYVLVEAETKGDVEELIKGM   70 (92)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEEEC-----------------TTSTTEEEEEESSHHHHHHHHTTC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEEC-----------------CCCCEEEEEEECCHHHHHHHHHCC
T ss_conf             638999846982999999999985289986--5999954-----------------998279999959889999998546


Q ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             30366432788610025889999997
Q gi|254780148|r   83 PKVIGFLGTGENPSPVTDSEIEHIMN  108 (177)
Q Consensus        83 ~gV~~~l~~~~~P~~i~~~ei~~l~~  108 (177)
                      +++.+.+     |..+|-+||++++.
T Consensus        71 ~~v~~~~-----~~~vp~~E~~~~L~   91 (92)
T 3lpe_A           71 PRVRGIV-----PGTIAIEEIEPLLT   91 (92)
T ss_dssp             TTEEEEC-----SSCCCHHHHHHHHC
T ss_pred             CCEECCC-----CCCCCHHHHHHHCC
T ss_conf             6574204-----66528999986349