Query         gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 177
No_of_seqs    123 out of 1849
Neff          8.0 
Searched_HMMs 23785
Date          Sun May 22 16:12:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780148.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1m1h_A Transcription antitermi 100.0       0       0  317.6  11.0  174    1-176     9-248 (248)
  2 2jvv_A Transcription antitermi 100.0       0       0  296.8   6.9  173    3-175     7-180 (181)
  3 2oug_A Transcriptional activat 100.0 6.8E-40 2.8E-44  257.6 -10.0  161    3-176     2-162 (162)
  4 1nz8_A Transcription antitermi 100.0 2.5E-30   1E-34  200.3  10.1  110    2-111     1-116 (119)
  5 1nz9_A Transcription antitermi  99.6 8.3E-15 3.5E-19  107.4   7.7   56  120-175     2-57  (58)
  6 3lpe_A Putative transcription   98.3 1.8E-06 7.6E-11   57.5   8.0   82    3-108    10-91  (92)
  7 3h7h_B Transcription elongatio  97.8   1E-05 4.4E-10   52.9   3.1   89    1-109     4-95  (106)
  8 2exu_A Transcription initiatio  97.5 0.00011 4.8E-09   46.7   5.5   83    4-108   103-190 (200)
  9 2e6z_A Transcription elongatio  97.1 0.00046   2E-08   43.0   4.6   54  120-175     5-58  (59)
 10 1vq8_T 50S ribosomal protein L  96.6  0.0027 1.1E-07   38.4   5.2   37  120-156    40-76  (120)
 11 2e70_A Transcription elongatio  96.6   0.004 1.7E-07   37.4   5.8   45  125-173    20-64  (71)
 12 2ckk_A KIN17; beta barrel, rib  96.5   0.005 2.1E-07   36.8   6.2   52  124-176    72-126 (127)
 13 2wwb_L 60S ribosomal protein L  96.5  0.0038 1.6E-07   37.6   5.3   37  120-156    47-83  (127)
 14 2zkr_t 60S ribosomal protein L  96.2  0.0067 2.8E-07   36.1   5.3   52  120-171    46-102 (145)
 15 2do3_A Transcription elongatio  96.0   0.012   5E-07   34.6   5.9   44  121-166    16-59  (69)
 16 2ftc_N Mitochondrial ribosomal  95.3   0.022 9.3E-07   33.0   4.9   35  126-160     1-36  (96)
 17 2zjr_R 50S ribosomal protein L  95.1   0.025   1E-06   32.7   4.7   37  120-156    13-49  (115)
 18 3bbo_W Ribosomal protein L24;   94.6  0.0037 1.5E-07   37.6  -0.7   38  119-156    65-102 (191)
 19 2j01_Y 50S ribosomal protein L  92.7  0.0076 3.2E-07   35.8  -1.8   40  121-160     5-45  (110)
 20 2jz2_A SSL0352 protein; SH3-li  92.6    0.37 1.5E-05   25.7   6.8   52  123-176     2-55  (66)
 21 3ofq_U 50S ribosomal protein L  80.7     0.1 4.2E-06   29.1  -2.2   35  121-156     2-36  (102)
 22 2joy_A 50S ribosomal protein L  79.6     2.1 8.6E-05   21.2   4.3   34  122-156     3-36  (96)
 23 3hht_B NitrIle hydratase beta   77.4     2.5  0.0001   20.7   4.1   30  118-147   137-176 (229)
 24 1ugp_B NitrIle hydratase beta   76.6     2.2 9.3E-05   21.0   3.7   30  118-147   134-173 (226)
 25 2eqm_A PHD finger protein 20-l  75.8     3.9 0.00016   19.5   5.0   42  119-162    16-57  (88)
 26 1vbk_A Hypothetical protein PH  63.2     4.2 0.00018   19.3   2.7   57   11-89     19-75  (307)
 27 2f5k_A MORF-related gene 15 is  58.8     8.7 0.00037   17.4   5.2   43  119-162    19-61  (102)
 28 2zzd_A Thiocyanate hydrolase s  57.2     9.3 0.00039   17.3   4.5   52   95-146     8-70  (126)
 29 1dj7_B Ferredoxin thioredoxin   54.1      10 0.00043   17.0   3.5   52  124-176     2-73  (75)
 30 1vq8_Q 50S ribosomal protein L  43.2      16 0.00065   15.9   7.5   52  122-175    33-94  (96)
 31 2d9t_A Tudor domain-containing  41.9      16 0.00068   15.8   5.9   53  120-176     7-62  (78)
 32 3a8g_B NitrIle hydratase subun  38.4      18 0.00078   15.5   3.1   63   80-145    75-155 (212)
 33 1wjs_A KIAA1798 protein; MBT d  34.6      21 0.00089   15.1   3.0   14   59-72     38-51  (127)
 34 1wjq_A KIAA1798 protein; MBT d  32.3      23 0.00098   14.9   3.4   40  118-161     9-50  (107)
 35 2e5p_A Protein PHF1, PHD finge  29.7      26  0.0011   14.6   5.4   50  119-173     6-57  (68)
 36 3kbg_A 30S ribosomal protein S  28.4      27  0.0011   14.5   4.7   33  119-151   135-167 (213)
 37 1g5v_A SurviVal motor neuron p  28.2      27  0.0012   14.5   5.7   51  121-175     9-62  (88)
 38 1mhn_A SurviVal motor neuron p  23.0      34  0.0014   13.9   5.4   50  122-175     3-55  (59)
 39 2eqj_A Metal-response element-  21.5      37  0.0015   13.7   5.0   51  119-174    10-62  (66)

No 1  
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=100.00  E-value=0  Score=317.59  Aligned_cols=174  Identities=41%  Similarity=0.716  Sum_probs=161.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEE--------------------------------
Q ss_conf             988618999528853899999999999779811143266313101277--------------------------------
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV--------------------------------   48 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~--------------------------------   48 (177)
                      |.++||++||.||+|++|+++|++++...++++++.+|.+|++++...                                
T Consensus         9 m~kkWYvv~t~SG~E~kVk~~le~~i~~~~~~~~i~~v~vP~e~v~e~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~i   88 (248)
T 1m1h_A            9 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRI   88 (248)
T ss_dssp             CCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSSEEEEEEEETTEEEEEEESSSSCEEEEEECSSSEEEEEE
T ss_pred             HCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             05866999826695899999999999877972344089904279999962763012002332222211012345521453


Q ss_pred             ----------------------------------ECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf             ----------------------------------2020356641203309999996186522444203303664327886
Q gi|254780148|r   49 ----------------------------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN   94 (177)
Q Consensus        49 ----------------------------------~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV~~~l~~~~~   94 (177)
                                                        ++|+++.++++||||||||++++++++|+.|++|+||++||+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gkk~~~er~LFPGYVFV~~~~~~~~~~~Ir~t~GV~~fVg~g~~  168 (248)
T 1m1h_A           89 ENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGK  168 (248)
T ss_dssp             CSSCEEEEECSTTCGGGGSCCBCSTTCEEEETTTTEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETTE
T ss_pred             ECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCE
T ss_conf             03310110023443222223334554321101104783699984358848999987272168887367424775206981


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHE
Q ss_conf             10025889999997653222100001234789779995187789719999982889889999981687047885678712
Q gi|254780148|r   95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE  174 (177)
Q Consensus        95 P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ie  174 (177)
                      |+||++++|+.|+..++++..  .....|.+||.|+|++|||+|++|.|.++|.+++|++|+++||||.|+|+|+++||+
T Consensus       169 P~pl~~~EI~~il~~~~~~~~--~~~~~f~~Gd~V~I~~GPF~g~~G~V~eid~ek~rv~Vlv~ifGR~tpVel~~~qVe  246 (248)
T 1m1h_A          169 PVPLKEEEVQNILNQIKRGVK--PSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE  246 (248)
T ss_dssp             ECEECHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred             EEECCHHHHHHHHHHHHCCCC--CCCCEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEECHHHEE
T ss_conf             014599999999987654666--654300179889994158999479999981888999999981699637987689978


Q ss_pred             EC
Q ss_conf             33
Q gi|254780148|r  175 KI  176 (177)
Q Consensus       175 ki  176 (177)
                      ||
T Consensus       247 Ki  248 (248)
T 1m1h_A          247 KI  248 (248)
T ss_dssp             --
T ss_pred             EC
T ss_conf             29


No 2  
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=100.00  E-value=0  Score=296.84  Aligned_cols=173  Identities=46%  Similarity=0.897  Sum_probs=161.6

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++|||++|+||+|++|+++|+++++..+++++++++|+|+++..+.++|+++.+.+||||||||++++++++.|+.|++|
T Consensus         7 k~WYvv~t~~~~E~kv~~~L~~~~~~~~l~~~~~ev~~P~~~~~~~~~gk~~~~~~plFPGYvFv~~~~~~~~~~~i~~t   86 (181)
T 2jvv_A            7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV   86 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHHCCHHHHCCEEECCEEEEEEECCCEEEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf             73999994789269999999999987173330548746478999971986899669852747999997489718998633


Q ss_pred             CEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf             30366432-78861002588999999765322210000123478977999518778971999998288988999998168
Q gi|254780148|r   83 PKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG  161 (177)
Q Consensus        83 ~gV~~~l~-~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~G  161 (177)
                      +||+++++ .++.|.|+++++++.++..+........+...|++||+|+|++|||+|++|.|.++|.+++|++|+++|||
T Consensus        87 ~gv~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~I~~GPf~g~~g~v~~v~~~k~r~~V~l~i~G  166 (181)
T 2jvv_A           87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG  166 (181)
T ss_dssp             ------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred             CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf             88257657765488889989999999986431334653221007988999136899968999998077899999999679


Q ss_pred             CEEEEEECHHHHEE
Q ss_conf             70478856787123
Q gi|254780148|r  162 RVTPVELAYNQVEK  175 (177)
Q Consensus       162 r~~~v~l~~~~iek  175 (177)
                      |.|+|++++++|+|
T Consensus       167 r~~~v~v~~~~v~k  180 (181)
T 2jvv_A          167 RATPVELDFSQVEK  180 (181)
T ss_dssp             EEEEEEECTTTEEE
T ss_pred             CCEEEEECHHHEEE
T ss_conf             95689987899880


No 3  
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=100.00  E-value=6.8e-40  Score=257.56  Aligned_cols=161  Identities=17%  Similarity=0.305  Sum_probs=145.1

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++|||++|+||+|++|+++|++         +++++|+|+.+..+.++|+++.+.+|||||||||+++..+..|+.|+++
T Consensus         2 k~Wyvv~t~~~~E~~~~~~L~~---------~g~~~f~P~~~~~~~~~~k~~~~~~plfpgYvFv~~~~~~~~~~~i~~~   72 (162)
T 2oug_A            2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT   72 (162)
T ss_dssp             CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred             CCEEEEEEECCHHHHHHHHHHH---------CCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf             8799999869989999999996---------6998982639999998999999998768968999942455468888545


Q ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf             30366432788610025889999997653222100001234789779995187789719999982889889999981687
Q gi|254780148|r   83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR  162 (177)
Q Consensus        83 ~gV~~~l~~~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr  162 (177)
                      +||+++|+++++|.+||+++|+.|+...+....   ....+.+||+|+|.+|||+|++|.|.++|++ .|+.|++++||+
T Consensus        73 ~gv~~~l~~~~~p~~i~~~~i~~l~~~~~~~~~---~~~~~~~Gd~V~I~~Gpf~g~~g~v~~~~~~-~r~~v~l~~lg~  148 (162)
T 2oug_A           73 RGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV---DPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK  148 (162)
T ss_dssp             TTEEEECCSSSSSCCCCCHHHHHHHHCC-----------------CTTHHHHHHHHHHHHTTCSSHH-HHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCEEEEEECCCCCCEEEEEEECCC-CEEEEEEHHCCC
T ss_conf             765577148980241889999998734556764---5544337878999426999949999998898-879999677198


Q ss_pred             EEEEEECHHHHEEC
Q ss_conf             04788567871233
Q gi|254780148|r  163 VTPVELAYNQVEKI  176 (177)
Q Consensus       163 ~~~v~l~~~~ieki  176 (177)
                      +++|+++.++|+||
T Consensus       149 ~~~v~v~~~~l~ki  162 (162)
T 2oug_A          149 EIKHSVKNTEFRKL  162 (162)
T ss_dssp             HHHHHHHC------
T ss_pred             CEEEEECHHHEEEC
T ss_conf             37999878996969


No 4  
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=99.97  E-value=2.5e-30  Score=200.32  Aligned_cols=110  Identities=31%  Similarity=0.681  Sum_probs=101.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECC-EEEEEECCEECEEEEEEEECCC-----CC
Q ss_conf             88618999528853899999999999779811143266313101277202-0356641203309999996186-----52
Q gi|254780148|r    2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPGYVLIKAVMTD-----KV   75 (177)
Q Consensus         2 ~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g-~~~~~~~plfpgYiFv~~~~~~-----~~   75 (177)
                      +++|||+||+||+|++|+++|++++...++++.++++|+|++++.+.++| +++.+.+|||||||||++++++     ++
T Consensus         1 ~mkWYvv~t~sg~E~~v~~~L~~~~~~~~l~~~~~~v~vP~~~~~~~~~ggk~~~~~~~lFPGYiFV~~~l~d~~~~~~~   80 (119)
T 1nz8_A            1 SIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEA   80 (119)
T ss_dssp             CCEEEEEECCTTTHHHHHHHHHHHHHHHTCTTTCCEEECSEEEEEEECSSSCEEEEEEESSTTEEEEEECCCSSSSCCHH
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHH
T ss_conf             96499999688948999999999998739632254788678888999848726888775479579999993665664014


Q ss_pred             HHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             244420330366432788610025889999997653
Q gi|254780148|r   76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE  111 (177)
Q Consensus        76 ~~~i~~t~gV~~~l~~~~~P~~i~~~ei~~l~~~~~  111 (177)
                      |+.|++|+||++|||++++|+||+++||++|+....
T Consensus        81 ~~~I~~t~gV~~fvg~~~~P~pv~~~Ei~~il~~~g  116 (119)
T 1nz8_A           81 WEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSG  116 (119)
T ss_dssp             HHHHHHSTTCCCCCCSSSSSCBCCHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCEEECCCCCEECCCCHHHHHHHHHHHC
T ss_conf             354145999059868999856089999999999738


No 5  
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=99.55  E-value=8.3e-15  Score=107.37  Aligned_cols=56  Identities=50%  Similarity=0.841  Sum_probs=53.8

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             12347897799951877897199999828898899999816870478856787123
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      ...|++||.|+|++|||+|++|.|.++|.+++|++|+++||||.|+|+++++||||
T Consensus         2 ~v~F~~Gd~V~V~~GpF~g~~g~V~~i~~~~~rv~Vll~ifGr~t~vel~~~~veK   57 (58)
T 1nz9_A            2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK   57 (58)
T ss_dssp             CCSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEECHHHEEC
T ss_conf             22306999999903689998999999918899999999944998237369899870


No 6  
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=98.33  E-value=1.8e-06  Score=57.45  Aligned_cols=82  Identities=28%  Similarity=0.426  Sum_probs=63.8

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      +.-|+++|++|+|+.++..|.++....+++  ++.+++|                 +-+.|||||++....+....++..
T Consensus        10 ~~ifaVk~t~G~E~~va~~l~~k~~~~~l~--I~Si~~p-----------------~~lkGYIyVEA~~~~~V~~ai~gl   70 (92)
T 3lpe_A           10 HMIFAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILAS-----------------ESLKGYVLVEAETKGDVEELIKGM   70 (92)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEEEC-----------------TTSTTEEEEEESSHHHHHHHHTTC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEEC-----------------CCCCEEEEEEECCHHHHHHHHHCC
T ss_conf             638999846982999999999985289986--5999954-----------------998279999959889999998546


Q ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             30366432788610025889999997
Q gi|254780148|r   83 PKVIGFLGTGENPSPVTDSEIEHIMN  108 (177)
Q Consensus        83 ~gV~~~l~~~~~P~~i~~~ei~~l~~  108 (177)
                      +++.+.+     |..+|-+||++++.
T Consensus        71 ~~v~~~~-----~~~vp~~E~~~~L~   91 (92)
T 3lpe_A           71 PRVRGIV-----PGTIAIEEIEPLLT   91 (92)
T ss_dssp             TTEEEEC-----SSCCCHHHHHHHHC
T ss_pred             CCEECCC-----CCCCCHHHHHHHCC
T ss_conf             6574204-----66528999986349


No 7  
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, metal-binding, nucleus, repressor, transcription regulation, zinc; 1.55A {Homo sapiens}
Probab=97.78  E-value=1e-05  Score=52.89  Aligned_cols=89  Identities=16%  Similarity=0.200  Sum_probs=59.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCC---CHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHH
Q ss_conf             988618999528853899999999999779---81114326631310127720203566412033099999961865224
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSG---LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYH   77 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~---~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~   77 (177)
                      |.|+=|+++|++|+|+.++..|.++.....   -+-.++.+|.|                 +-++|||||++....+...
T Consensus         4 ~DP~iw~Vk~~~G~E~~va~~i~~k~~~~~~~~~~l~I~Sv~~p-----------------~~lkGyIyVEA~~~~~V~~   66 (106)
T 3h7h_B            4 MDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAP-----------------EHVKGYIYVEAYKQTHVKQ   66 (106)
T ss_dssp             CCCEEEEEECCTTCHHHHHHHHHHHHHHHTTSSSCCCCCEEEEC-----------------TTCCSEEEEEESSHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-----------------CCCCEEEEEEECCHHHHHH
T ss_conf             89977999868980899999999999873246997650799824-----------------8883689998798899999


Q ss_pred             HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             44203303664327886100258899999976
Q gi|254780148|r   78 TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ  109 (177)
Q Consensus        78 ~i~~t~gV~~~l~~~~~P~~i~~~ei~~l~~~  109 (177)
                      .++..+++.+..   ..+.-+|-+||.+++..
T Consensus        67 ai~Gi~~v~~~~---~~~~lVpi~Em~~~L~~   95 (106)
T 3h7h_B           67 AIEGVGNLRLGY---WNQQMVPIKEMTDVLKV   95 (106)
T ss_dssp             HHTTCGGGGGGS---SCCEECCGGGTTGGGCC
T ss_pred             HHHCCHHHCCCC---CCCCEECHHHHHHHCCC
T ss_conf             985212212556---84617749997765513


No 8  
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=97.54  E-value=0.00011  Score=46.68  Aligned_cols=83  Identities=12%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHH---HHCCCHH--HCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHH
Q ss_conf             61899952885389999999999---9779811--143266313101277202035664120330999999618652244
Q gi|254780148|r    4 RWYIVQVYSNCEKKAVESIGGRL---SRSGLDH--LVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT   78 (177)
Q Consensus         4 ~Wyvv~t~~~~E~~v~~~L~~~~---~~~~~~~--~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~   78 (177)
                      .=|+++|++|+|+.++.+|-++.   .+.+-.+  .++.+|.|                 +=++|||||++....+....
T Consensus       103 sIw~Vrc~~GkErevv~~Im~K~~~l~~~~~~~~l~I~Sif~p-----------------~~lKGYIyVEA~~~~~V~~a  165 (200)
T 2exu_A          103 TIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQR-----------------DNYTGRIYIEAPKQSVIEKF  165 (200)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHHSCSSCCCCCEEECC-----------------TTSTTEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-----------------CCCCEEEEEEECCHHHHHHH
T ss_conf             5799975787179999999999999873146898766999956-----------------99747999987988999999


Q ss_pred             HHCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             420330366432788610025889999997
Q gi|254780148|r   79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMN  108 (177)
Q Consensus        79 i~~t~gV~~~l~~~~~P~~i~~~ei~~l~~  108 (177)
                      +...++|.+.     .+..+|-+||.+|+.
T Consensus       166 i~Gl~~v~~~-----~~~lVpi~Em~~lL~  190 (200)
T 2exu_A          166 CNGVPDIYIS-----QKLLIPVQELPLLLK  190 (200)
T ss_dssp             HTTCTTEEEE-----EEEECCGGGHHHHHC
T ss_pred             HHCCCCEECC-----CCCEECHHHHHHHCC
T ss_conf             8525001334-----651058899876466


No 9  
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11  E-value=0.00046  Score=43.01  Aligned_cols=54  Identities=20%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             12347897799951877897199999828898899999816870478856787123
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      ...|.+||.|+|..|-++|+.|.|.+++.  ..++|..+.-+=..+++++..+|+|
T Consensus         5 ~~~F~~GD~VeV~~GEl~~l~G~V~~v~~--d~Vti~p~~~~L~~~l~fp~~~LrK   58 (59)
T 2e6z_A            5 SSGFQPGDNVEVCEGELINLQGKILSVDG--NKITIMPKHEDLKDMLEFPAQELRK   58 (59)
T ss_dssp             CSSCCTTSEEEECSSTTTTCEEEECCCBT--TEEEEEECCSSCCSCEEEETTTEEE
T ss_pred             CCCCCCCCEEEEECCEECCCEEEEEEECC--CEEEEEECCCCCCCCEEECHHHCCC
T ss_conf             36549999899922676377999999729--9999977740358507607898734


No 10 
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.61  E-value=0.0027  Score=38.43  Aligned_cols=37  Identities=43%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             1234789779995187789719999982889889999
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ...+..||.|.|+.|.|+|-+|.|.+++..++++.|.
T Consensus        40 ~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~rV~Ve   76 (120)
T 1vq8_T           40 NVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE   76 (120)
T ss_dssp             EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             CCCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEE
T ss_conf             3315079999995667699753299998679999994


No 11 
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.56  E-value=0.004  Score=37.39  Aligned_cols=45  Identities=24%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             CCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHH
Q ss_conf             8977999518778971999998288988999998168704788567871
Q gi|254780148|r  125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV  173 (177)
Q Consensus       125 ~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~i  173 (177)
                      +|+.|+|..|||+|+.|.|.+++..  .+.|+++.-.+.  |.++-++|
T Consensus        20 iGktV~I~~GpyKG~~G~Vkd~t~~--~~rVELhs~~K~--V~V~r~~l   64 (71)
T 2e70_A           20 IGQTVRISQGPYKGYIGVVKDATES--TARVELHSTCQT--ISVDRQRL   64 (71)
T ss_dssp             TTSEEEECSSTTTTCEEEEEEECSS--CEEEEESSSCCE--EEECTTTE
T ss_pred             CCCEEEEEECCCCCEEEEEEECCCC--EEEEEEECCCEE--EEEEHHHE
T ss_conf             5888899663768868999965288--799998158769--99898880


No 12 
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.55  E-value=0.005  Score=36.83  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=42.5

Q ss_pred             CCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEE---CCCEEEEEECHHHHEEC
Q ss_conf             789779995187789719999982889889999981---68704788567871233
Q gi|254780148|r  124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI---FGRVTPVELAYNQVEKI  176 (177)
Q Consensus       124 ~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i---~Gr~~~v~l~~~~ieki  176 (177)
                      ++|+.|.|+.|++.|..|.+.++|.++..+.|.++-   -|+ +...++++++-|+
T Consensus        72 k~g~~V~Vv~G~~rG~~g~L~~id~~~~~~~v~l~~~~~~~~-~v~~~~yddickl  126 (127)
T 2ckk_A           72 APGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGR-RVEGIQYEDISKL  126 (127)
T ss_dssp             CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTC-EEEEEEGGGEEEB
T ss_pred             CCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCC-EEEECCHHHHHCC
T ss_conf             899979998467678589999993436889999715887675-8972488997401


No 13 
>2wwb_L 60S ribosomal protein L26-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_L 2ww9_L 1s1i_U
Probab=96.49  E-value=0.0038  Score=37.58  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=33.1

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             1234789779995187789719999982889889999
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ...+..||.|.|+.|.|+|-+|.|.+++..++++.|.
T Consensus        47 s~~IrkGD~V~Vi~G~~KGk~GkV~~V~~~~~kV~VE   83 (127)
T 2wwb_L           47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD   83 (127)
T ss_dssp             EEECCTTSEEEECSSSSTTCEEEEEEEETTTTEEEES
T ss_pred             CCEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEE
T ss_conf             1106079999997743489413699998779999991


No 14 
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=96.20  E-value=0.0067  Score=36.07  Aligned_cols=52  Identities=21%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CCCCCCCCEEEEECCCCCCCE-EEEEEECCCCCEEEEE----EEECCCEEEEEECHH
Q ss_conf             123478977999518778971-9999982889889999----981687047885678
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFN-GIVKNVDEEKSRVHVE----VVIFGRVTPVELAYN  171 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~-g~v~~i~~~~~r~~V~----v~i~Gr~~~v~l~~~  171 (177)
                      ......||.|.|+.|.|+|.+ |.|..+|..+.++.|.    -..=|..+++-++.+
T Consensus        46 s~pVrkgD~V~V~RG~fkG~e~GKV~~V~~k~~~I~VEgvt~~K~dG~~v~~pIhpS  102 (145)
T 2zkr_t           46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPS  102 (145)
T ss_dssp             CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEECSSCCEEECCBCGG
T ss_pred             CEEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEECCEEEECCCCCEEECCCCCC
T ss_conf             120136999999727978876867999980751999756689826997761352751


No 15 
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.04  E-value=0.012  Score=34.58  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEE
Q ss_conf             2347897799951877897199999828898899999816870478
Q gi|254780148|r  121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV  166 (177)
Q Consensus       121 ~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v  166 (177)
                      ..|++||.|+|++|-++|-.|.|.+++.  .++.++-+.-.++..|
T Consensus        16 K~F~~GDHVkVi~G~~~GetGlVV~v~~--~~v~~~sD~t~~Ei~V   59 (69)
T 2do3_A           16 KYFKMGDHVKVIAGRFEGDTGLIVRVEE--NFVILFSDLTMHELKV   59 (69)
T ss_dssp             SSCCTTCEEEESSSTTTTCEEEEEEECS--SCEEEEESSSCSEEEE
T ss_pred             EECCCCCEEEEECCEECCCCEEEEEEEC--CEEEEEECCCCCEEEE
T ss_conf             5134998389906568697579999969--9999985899878999


No 16 
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=95.29  E-value=0.022  Score=32.99  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             CCEEEEECCCCCCCEEEEEEECCCCCEEEEE-EEEC
Q ss_conf             9779995187789719999982889889999-9816
Q gi|254780148|r  126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIF  160 (177)
Q Consensus       126 G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~-v~i~  160 (177)
                      ||+|.|++|..+|-.|.|.+++.+++++.|. +++-
T Consensus         1 GD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN~~   36 (96)
T 2ftc_N            1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTH   36 (96)
T ss_pred             CCEEEEEECCCCCCCEEEEEEECCCCEEEEECEEEE
T ss_conf             999999068989970799999986899999465999


No 17 
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.11  E-value=0.025  Score=32.69  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             1234789779995187789719999982889889999
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ...+..||.|.|++|.-+|-.|.|.+++..++++.|.
T Consensus        13 K~kikkGD~V~VisGkdKGK~G~Vl~V~~k~n~ViVe   49 (115)
T 2zjr_R           13 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE   49 (115)
T ss_dssp             CCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred             CEEEECCCEEEEEECCCCCCCEEEEEEECCCCEEEEE
T ss_conf             2023179999991557899717899998889999996


No 18 
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=94.56  E-value=0.0037  Score=37.64  Aligned_cols=38  Identities=21%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             CCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             01234789779995187789719999982889889999
Q gi|254780148|r  119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       119 ~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ....++.||+|.|++|..+|-.|.|.+++.+++++.|.
T Consensus        65 ~K~~IKkGD~V~VIsGkDKGK~G~Vl~V~~k~n~ViVe  102 (191)
T 3bbo_W           65 HKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK  102 (191)
T ss_dssp             TSCCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred             EEEECCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
T ss_conf             21001589999992568999432798998679999996


No 19 
>2j01_Y 50S ribosomal protein L24; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.1 PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=92.70  E-value=0.0076  Score=35.76  Aligned_cols=40  Identities=35%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             CCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE-EEEC
Q ss_conf             234789779995187789719999982889889999-9816
Q gi|254780148|r  121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIF  160 (177)
Q Consensus       121 ~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~-v~i~  160 (177)
                      ..+..||.|.|++|+.+|-.|.|.+++.+++++.|. +++-
T Consensus         5 ~kikkGD~V~VisGkdKGK~G~Vl~V~~~~~~ViVeGvN~~   45 (110)
T 2j01_Y            5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIV   45 (110)
T ss_dssp             CCSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTSCCCC
T ss_pred             CEEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEE
T ss_conf             48757999999168889971789999898999999783756


No 20 
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, target SGR42, PSI, protein structure initiative; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=92.63  E-value=0.37  Score=25.67  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=40.9

Q ss_pred             CCCCCEEEEEC--CCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEEC
Q ss_conf             47897799951--8778971999998288988999998168704788567871233
Q gi|254780148|r  123 FEVGERVCVSD--GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI  176 (177)
Q Consensus       123 ~~~G~~V~I~~--Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ieki  176 (177)
                      +-||..|+|.+  -++-|++|.|.++.+  ++|-|+++=-.=.-.|++.++++|.+
T Consensus         2 ILPG~~V~V~n~~~~Y~gy~G~VQRvsd--gkaaVLFEGgnWDKlvTf~L~eLe~v   55 (66)
T 2jz2_A            2 IFPGATVRVTNVDDTYYRFEGLVQRVSD--GKAAVLFENGNWDKLVTFRLSELEAV   55 (66)
T ss_dssp             CCTTCEEEECCTTSTTBTCEEEEEEEET--TEEEEEEESSSCEEEEEEESTTEEEC
T ss_pred             CCCCCEEEEECCCCCEEHEEEEEEEECC--CEEEEEECCCCCEEEEEEEHHHCEEE
T ss_conf             3599889986898860010589999419--90899957997217899881154464


No 21 
>3ofq_U 50S ribosomal protein L24; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3ofr_U* 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3kcr_U 3orb_U* 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S ...
Probab=80.70  E-value=0.1  Score=29.06  Aligned_cols=35  Identities=31%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             CCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             234789779995187789719999982889889999
Q gi|254780148|r  121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       121 ~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ..+..||.|.|++|..+|-.|.|.++..+ +++.|.
T Consensus         2 akIkkGD~V~VisGkdKGK~G~Vl~v~~~-~rviVe   36 (102)
T 3ofq_U            2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE   36 (102)
T ss_dssp             CCSCSSCCBCCCSSSSCSCCBCCCCCCSS-SCCCCS
T ss_pred             CCCCCCCEEEEEECCCCCCCEEEEEEECC-CEEEEE
T ss_conf             86317999999479889974589999589-969997


No 22 
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=79.62  E-value=2.1  Score=21.20  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             34789779995187789719999982889889999
Q gi|254780148|r  122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE  156 (177)
Q Consensus       122 ~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~  156 (177)
                      ..++|--|.+..||++|-.+.|.++- |++|+.|.
T Consensus         3 ~VEvGRVv~i~~G~~~GKl~vIvdii-D~~rvLVd   36 (96)
T 2joy_A            3 AIEVGRICVKVKGREAGSKCVIVDII-DDNFVLVT   36 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEE
T ss_pred             CEECCEEEEEEECCCCCCEEEEEEEE-CCCEEEEE
T ss_conf             56457899994078789789999997-79869997


No 23 
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_B 1v29_B
Probab=77.35  E-value=2.5  Score=20.71  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCEEEEEC----------CCCCCCEEEEEEEC
Q ss_conf             0012347897799951----------87789719999982
Q gi|254780148|r  118 VSSVFFEVGERVCVSD----------GPFASFNGIVKNVD  147 (177)
Q Consensus       118 ~~~~~~~~G~~V~I~~----------Gpf~g~~g~v~~i~  147 (177)
                      ...+.|++||+|+|.+          +...|..|+|..+.
T Consensus       137 ~~~p~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~i~~~~  176 (229)
T 3hht_B          137 SASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY  176 (229)
T ss_dssp             SSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCEEEEEEEE
T ss_conf             8898567898778842789985006577678746999883


No 24 
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=76.64  E-value=2.2  Score=21.01  Aligned_cols=30  Identities=20%  Similarity=0.121  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCEEEEECC----------CCCCCEEEEEEEC
Q ss_conf             00123478977999518----------7789719999982
Q gi|254780148|r  118 VSSVFFEVGERVCVSDG----------PFASFNGIVKNVD  147 (177)
Q Consensus       118 ~~~~~~~~G~~V~I~~G----------pf~g~~g~v~~i~  147 (177)
                      ...+.|++||+|+|.+-          ...|..|+|..+.
T Consensus       134 ~~~p~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~I~~~~  173 (226)
T 1ugp_B          134 DRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH  173 (226)
T ss_dssp             SSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCEECCHHHCCCEEEEEEEE
T ss_conf             8998478999899787899882017366678756999985


No 25 
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=75.79  E-value=3.9  Score=19.55  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf             01234789779995187789719999982889889999981687
Q gi|254780148|r  119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR  162 (177)
Q Consensus       119 ~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr  162 (177)
                      +...|++|+++.+.+---.-+.+.|..++....++  +|.+-|-
T Consensus        16 p~~~F~vG~kLEa~D~~~~w~~a~v~~v~~~g~~v--~VhfdGw   57 (88)
T 2eqm_A           16 PGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKM--LVHFERW   57 (88)
T ss_dssp             SSCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEE--EEEESSS
T ss_pred             CCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCEE--EEEECCC
T ss_conf             98634548899998389996999999996349999--9998999


No 26 
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=63.21  E-value=4.2  Score=19.33  Aligned_cols=57  Identities=16%  Similarity=0.108  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCCEEEEEE
Q ss_conf             2885389999999999977981114326631310127720203566412033099999961865224442033036643
Q gi|254780148|r   11 YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL   89 (177)
Q Consensus        11 ~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV~~~l   89 (177)
                      +...|+...+||++.+...++...  +++                    .-.|++++..+..++.-..+..++||.++-
T Consensus        19 R~~fe~~L~~Ni~~~L~~~~~~~~--~v~--------------------~~~~ri~v~~~~~~e~~~~L~~vfGI~s~s   75 (307)
T 1vbk_A           19 RSWFEKILMNNIREALVTEEVPYK--EIF--------------------SRHGRIIVKTNSPKEAANVLVRVFGIVSIS   75 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCS--EEE--------------------EETTEEEEECSCHHHHHHHHTTSTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCE--EEE--------------------EECCEEEEECCCHHHHHHHHHHCCCCCEEE
T ss_conf             999999999999999875699825--999--------------------975799997599799999998638986497


No 27 
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=58.76  E-value=8.7  Score=17.43  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf             01234789779995187789719999982889889999981687
Q gi|254780148|r  119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR  162 (177)
Q Consensus       119 ~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr  162 (177)
                      +...|++|++|.+..|+.- ++|.|.+++..++...-+|..-|=
T Consensus        19 p~~~f~~Ge~Vl~~~~~~~-Y~AkVl~v~~~~~~~~Y~VHY~Gw   61 (102)
T 2f5k_A           19 PKPKFQEGERVLCFHGPLL-YEAKCVKVAIKDKQVKYFIHYSGW   61 (102)
T ss_dssp             CSCSCCTTCEEEEESSSSE-EEEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCCCCCCCEEEEEECCEE-EEEEEEEEEECCCCEEEEEEECCC
T ss_conf             9984378999999979927-898999999759926999995787


No 28 
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=57.16  E-value=9.3  Score=17.27  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=30.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCCCEEEEEC----------CCCCCCEEEEEEE
Q ss_conf             1002588999999765322210-00012347897799951----------8778971999998
Q gi|254780148|r   95 PSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGERVCVSD----------GPFASFNGIVKNV  146 (177)
Q Consensus        95 P~~i~~~ei~~l~~~~~~~~~~-~~~~~~~~~G~~V~I~~----------Gpf~g~~g~v~~i  146 (177)
                      |.--....++.....-...... ......|++||+|++.+          +...|..|+|..+
T Consensus         8 ~~~~r~~~~~~~~~~G~P~~~~~~~~~prF~vGD~Vrv~~~~p~gHtRlP~YvRGk~G~I~~~   70 (126)
T 2zzd_A            8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRL   70 (126)
T ss_dssp             CCCCSSHHHHHHTTTCTTGGGTTTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEE
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCHHHCCCEEEEEEE
T ss_conf             367631235665325796302365789934789999982489999404767778987899997


No 29 
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=54.06  E-value=10  Score=16.99  Aligned_cols=52  Identities=25%  Similarity=0.265  Sum_probs=32.0

Q ss_pred             CCCCEEEEEC-----------CC---CCCCEEEEEEECC-CCCEE-----EEEEEECCCEEEEEECHHHHEEC
Q ss_conf             7897799951-----------87---7897199999828-89889-----99998168704788567871233
Q gi|254780148|r  124 EVGERVCVSD-----------GP---FASFNGIVKNVDE-EKSRV-----HVEVVIFGRVTPVELAYNQVEKI  176 (177)
Q Consensus       124 ~~G~~V~I~~-----------Gp---f~g~~g~v~~i~~-~~~r~-----~V~v~i~Gr~~~v~l~~~~ieki  176 (177)
                      ++||+|+|.+           |+   +.|++|+|..+-. =++|-     -+.+.+ +..-.+-+-.+++|-|
T Consensus         2 kvGdrVrV~~sv~VyhhP~hr~~~fDl~G~eGeV~~~v~~wkGr~ISanlP~~V~F-~~kf~aHlredElE~i   73 (75)
T 1dj7_B            2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKF-EQRFKAHFRPDEVTLI   73 (75)
T ss_dssp             CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSEETTEECCCSSCEEEEE-TTTEEEEECGGGEEEC
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCCCEEEEE-CCCEEEEECHHHEEEC
T ss_conf             88999998001899848765798845688777776787313796956997699997-4311378654362441


No 30 
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=43.22  E-value=16  Score=15.93  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEC-C---------CCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             347897799951-8---------77897199999828898899999816870478856787123
Q gi|254780148|r  122 FFEVGERVCVSD-G---------PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       122 ~~~~G~~V~I~~-G---------pf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      .|++||.|.|.- |         -|.|-.|.|....+  .-..|.+..-++.-.+-+-.+.|++
T Consensus        33 ~f~~GD~V~I~idpsv~kGMPh~~yhGkTG~V~~~~g--~a~~V~v~~g~k~K~i~vr~eHlk~   94 (96)
T 1vq8_Q           33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQG--DAYKVDIVDGGKEKTIIVTAAHLRR   94 (96)
T ss_dssp             CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEET--TEEEEEEEETTEEEEEEECGGGEEE
T ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC--EEEEEEEECCCEEEEEEECHHHCCC
T ss_conf             0269988999736971138875211487357994367--3999999628714799966566456


No 31 
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=41.94  E-value=16  Score=15.81  Aligned_cols=53  Identities=11%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             CCCCCCCCEEEEE---CCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEEC
Q ss_conf             1234789779995---18778971999998288988999998168704788567871233
Q gi|254780148|r  120 SVFFEVGERVCVS---DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI  176 (177)
Q Consensus       120 ~~~~~~G~~V~I~---~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ieki  176 (177)
                      ...+++|+.+...   ||  .=+.|.|.+++.++..+.|.+-=+|..  -.++.++|..+
T Consensus         7 ~~~wkvG~~C~A~~~~D~--~wYRa~I~~i~~~~~~~~V~fvDYGn~--e~V~~~~Lr~l   62 (78)
T 2d9t_A            7 GKVWKPGDECFALYWEDN--KFYRAEVEALHSSGMTAVVKFTDYGNY--EEVLLSNIKPV   62 (78)
T ss_dssp             CCCCCTTCEEEEECTTTC--CEEEEEEEEECSSSSEEEEEETTTTEE--EEEEGGGEEEC
T ss_pred             CCCCCCCCEEEEEECCCC--CEEEEEEEEECCCCCEEEEEEEECCCE--EEEEHHHEEEC
T ss_conf             740473999999989889--699999999837899899999908996--99877990898


No 32 
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=38.42  E-value=18  Score=15.48  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH--------HHHHHHCCCCCCCCCCEEEEEC----------CCCCCCEE
Q ss_conf             20330366432788610025889999997653--------2221000012347897799951----------87789719
Q gi|254780148|r   80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--------AAVQRPVSSVFFEVGERVCVSD----------GPFASFNG  141 (177)
Q Consensus        80 ~~t~gV~~~l~~~~~P~~i~~~ei~~l~~~~~--------~~~~~~~~~~~~~~G~~V~I~~----------Gpf~g~~g  141 (177)
                      +-+-++..+|-..+   .|+.+|++......-        .+...+.....|++||+|+|.+          +...|..|
T Consensus        75 ~Wl~ale~lLvekG---~it~~EL~a~~~~~~~~~~~~~~~g~~~~~~~p~F~vGd~Vrv~~~~~~gHtRlP~Y~rgk~G  151 (212)
T 3a8g_B           75 RYVIGVATLMVEKG---ILTQDELESLAGGPFPLSRPSESEGRPAPVETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVG  151 (212)
T ss_dssp             HHHHHHHHHHHHTT---SSCHHHHHHHHTSCCCCCCCCSCCCCCCCSCCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEE
T ss_pred             HHHHHHHHHHHHCC---CCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCEECCHHHCCCEE
T ss_conf             99999999999839---978999964535677655411204898768898679999899754899983016166668747


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780148|r  142 IVKN  145 (177)
Q Consensus       142 ~v~~  145 (177)
                      +|..
T Consensus       152 ~I~~  155 (212)
T 3a8g_B          152 TISH  155 (212)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9987


No 33 
>1wjs_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=34.59  E-value=21  Score=15.11  Aligned_cols=14  Identities=0%  Similarity=-0.327  Sum_probs=8.5

Q ss_pred             CEECEEEEEEEECC
Q ss_conf             20330999999618
Q gi|254780148|r   59 RFFPGYVLIKAVMT   72 (177)
Q Consensus        59 plfpgYiFv~~~~~   72 (177)
                      .+.-+|++++.+--
T Consensus        38 ~v~g~~l~l~~dg~   51 (127)
T 1wjs_A           38 EVCGYRIKLHFDGY   51 (127)
T ss_dssp             EEETTEEEEEETTS
T ss_pred             EEECCEEEEEECCC
T ss_conf             87899999996899


No 34 
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=32.31  E-value=23  Score=14.89  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCEEEEEC--CCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf             0012347897799951--8778971999998288988999998168
Q gi|254780148|r  118 VSSVFFEVGERVCVSD--GPFASFNGIVKNVDEEKSRVHVEVVIFG  161 (177)
Q Consensus       118 ~~~~~~~~G~~V~I~~--Gpf~g~~g~v~~i~~~~~r~~V~v~i~G  161 (177)
                      .+...|++|.++++++  .|..=..+.|.++.+  +++.|  .+-|
T Consensus         9 ~P~~~F~vGmKLEavD~~~p~~i~vAtV~~v~g--~~l~v--~~DG   50 (107)
T 1wjq_A            9 KPPHGFQKKMKLEVVDKRNPMFIRVATVADTDD--HRVKV--HFDG   50 (107)
T ss_dssp             CCSSSCCSSCEEEEECTTCTTCEEEEEEEEECS--SCEEE--ECSS
T ss_pred             CCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEC--CEEEE--EECC
T ss_conf             898526679999988788983689999999889--99999--9788


No 35 
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.73  E-value=26  Score=14.62  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CCCCCCCCCEEEEE--CCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHH
Q ss_conf             01234789779995--18778971999998288988999998168704788567871
Q gi|254780148|r  119 SSVFFEVGERVCVS--DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV  173 (177)
Q Consensus       119 ~~~~~~~G~~V~I~--~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~i  173 (177)
                      +.+.|..|+.|...  ||-  =+-|.|.+++.+..+..|.+   .-.+.--+.+.+|
T Consensus         6 s~p~f~~G~~VLarW~Dg~--fYlg~I~~V~~~~~~c~V~F---~Dns~~wV~~Kdi   57 (68)
T 2e5p_A            6 SGPRLWEGQDVLARWTDGL--LYLGTIKKVDSAREVCLVQF---EDDSQFLVLWKDI   57 (68)
T ss_dssp             CCCCCCTTCEEEEECTTSS--EEEEEEEEEETTTTEEEEEE---TTTEEEEEETTTE
T ss_pred             CCCCCCCCCEEEEEECCCC--EEEEEEEEEECCCCEEEEEE---ECCCEEEEEEECC
T ss_conf             8876335878998840685--85557999825898899999---4597899997415


No 36 
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=28.38  E-value=27  Score=14.48  Aligned_cols=33  Identities=9%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             CCCCCCCCCEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             012347897799951877897199999828898
Q gi|254780148|r  119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS  151 (177)
Q Consensus       119 ~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~  151 (177)
                      ....|++|..+-|+.|-=.|..|.|.++....+
T Consensus       135 ~~i~fe~G~~~~vtgG~n~GrvG~I~~Ie~~~~  167 (213)
T 3kbg_A          135 EIIKMQPGNKAYITAGSHVNQTGTISKIEAKEG  167 (213)
T ss_dssp             EEECCSTTCEEEECSSTTTTCEEEEEEECCCSC
T ss_pred             EEEECCCCCEEEEECCCCCCEEEEEEEEEEECC
T ss_conf             888236999999958852644699999997258


No 37 
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=28.15  E-value=27  Score=14.46  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEE---CCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             234789779995---1877897199999828898899999816870478856787123
Q gi|254780148|r  121 VFFEVGERVCVS---DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       121 ~~~~~G~~V~I~---~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      ..+++|+.+...   +|  .=+.|.|.+++.+.+.+.|.+.=+|..-.|  ++++|..
T Consensus         9 ~~wkvG~~C~A~~s~D~--~wYRA~I~~i~~~~~~~~V~fvDYGn~e~V--~~~~L~~   62 (88)
T 1g5v_A            9 QQWKVGDKCSAIWSEDG--CIYPATIASIDFKRETCVVVYTGYGNREEQ--NLSDLLS   62 (88)
T ss_dssp             CCCCSSCEEEEECTTTC--CEEEEEEEEEETTTTEEEEEETTTCCEEEE--EGGGCBC
T ss_pred             CCCCCCCEEEEEECCCC--CEEEEEEEEECCCCCEEEEEEEECCCEEEE--CHHHHCC
T ss_conf             66875999999988789--698999998537899699999926997998--0999057


No 38 
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
Probab=22.97  E-value=34  Score=13.87  Aligned_cols=50  Identities=14%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             CCCCCCEEEEE---CCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             34789779995---1877897199999828898899999816870478856787123
Q gi|254780148|r  122 FFEVGERVCVS---DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       122 ~~~~G~~V~I~---~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      .+++|+.+...   +|-  =+.|.|.+++.+.+.+.|.+.=+|..-.|  +.++|.+
T Consensus         3 ~wkvG~~C~A~~~~D~~--wYRA~I~~i~~~~~~~~V~fvDYGn~e~V--~~~~L~~   55 (59)
T 1mhn_A            3 QWKVGDKCSAIWSEDGC--IYPATIASIDFKRETCVVVYTGYGNREEQ--NLSDLLS   55 (59)
T ss_dssp             CCCTTCEEEEECTTTSC--EEEEEEEEEETTTTEEEEEETTTTEEEEE--EGGGCBC
T ss_pred             CCCCCCEEEEEECCCCC--EEEEEEEEECCCCCEEEEEEECCCCEEEE--EHHHCCC
T ss_conf             68759999999987898--98899999718899999999648998998--9999789


No 39 
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.49  E-value=37  Score=13.69  Aligned_cols=51  Identities=22%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CCCCCCCCCEEEE--ECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHE
Q ss_conf             0123478977999--5187789719999982889889999981687047885678712
Q gi|254780148|r  119 SSVFFEVGERVCV--SDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE  174 (177)
Q Consensus       119 ~~~~~~~G~~V~I--~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ie  174 (177)
                      +...|..|+.|-+  .||-|  +-|.|.+++...++..|.+   .-.+.--+.+.+|.
T Consensus        10 ~~~~f~~GedVLarwtDg~f--YlgtI~~V~~~~~~clV~F---~D~s~~wv~~kdi~   62 (66)
T 2eqj_A           10 PACKFEEGQDVLARWSDGLF--YLGTIKKINILKQSCFIIF---EDSSKSWVLWKDIQ   62 (66)
T ss_dssp             CCCCSCTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEE---TTTEEEEEETTTEE
T ss_pred             HHHHCCCCCEEEEEECCCCE--EEEEEEEEECCCCEEEEEE---ECCCEEEEEEECCC
T ss_conf             10101579889999316868--7767899834797799999---34976889933142


Done!