HHSEARCH alignment of GI: 254780148 and SCOP domain: d1m1ha2

Alignment
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G protein NusG, N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.95  E-value=5.7e-28  Score=184.73  Aligned_cols=96  Identities=38%  Similarity=0.705  Sum_probs=91.6

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf             98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK   80 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~   80 (177)
                      |+++|||+||+||+|++|+++|++++...++++.+.++.+|+               +++|||||||++++++++|+.|+
T Consensus         5 ~~kkWYvv~t~Sg~E~kV~~~l~~~~~~~~l~~~i~~v~VP~---------------~klfPGYvfV~~~~~~~~~~~Ir   69 (101)
T d1m1ha2           5 LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPA---------------NKIFPGYILIKAHMNDKLLMAIE   69 (101)
T ss_dssp             CCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSS---------------CSSSTTEEEEEECCCHHHHHHHH
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCC---------------HHCCCCEEEEEEEECCHHHHHHH
T ss_conf             358679999378956999999999998718056668786522---------------10378779999974746789985


Q ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             0330366432788610025889999997653
Q gi|254780148|r   81 DTPKVIGFLGTGENPSPVTDSEIEHIMNQVE  111 (177)
Q Consensus        81 ~t~gV~~~l~~~~~P~~i~~~ei~~l~~~~~  111 (177)
                      +|+||++|||++++|.||+++|+++|++.++
T Consensus        70 ~t~gV~~fvg~~~~P~pl~~~Ev~~il~~v~  100 (101)
T d1m1ha2          70 KTPHVFRPVMVGGKPVPLKEEEVQNILNQIK  100 (101)
T ss_dssp             TSTTEEEECEETTEECEECHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             4998788268898417699999999999863


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: N-utilization substance G protein NusG, N-terminal domain
family: N-utilization substance G protein NusG, N-terminal domain
domain: N-utilization substance G protein NusG, N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]