BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter asiaticus str. psy62] (177 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|317123109|ref|YP_004103112.1| transcription antitermination protein nusG [Thermaerobacter marianensis DSM 12885] gi|315593089|gb|ADU52385.1| transcription antitermination protein nusG [Thermaerobacter marianensis DSM 12885] Length = 234 Score = 201 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FPG Sbjct: 64 QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 123 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ + P + F Sbjct: 124 YVLVEMIMTDDSWYVVRNTPGVTGFVGAGNKPTPLLPSEVEQIRRQMG--MDEPRPLIRF 181 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V V+DGPF F G V+++D +K ++ V V +FGR TPVEL + QVEKI Sbjct: 182 EVGESVKVADGPFEGFIGQVESIDHQKGKLRVLVSMFGRETPVELDFTQVEKI 234 >gi|313903164|ref|ZP_07836558.1| transcription antitermination protein nusG [Thermaerobacter subterraneus DSM 13965] gi|313466666|gb|EFR62186.1| transcription antitermination protein nusG [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 2/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS E K +I R+ G+ + E+ +P+E + V+ G++ +R+ FPG Sbjct: 66 QWYVIHTYSGYENKVKANIEKRVRTMGMQDKIFEVLVPTEEAIEVKDGKRRTVQRKVFPG 125 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+ +MTD ++ +++TP V GF+G G P+P+ SE+E I Q+ V P + F Sbjct: 126 YVLVDMIMTDDSWYVVRNTPGVTGFVGAGSKPTPLLPSEVEQIRRQMG--VDEPRPLIRF 183 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V V+DGPF F G V+ +D +K ++ V V +FGR TPVEL + QVEK+ Sbjct: 184 EVGESVKVADGPFEGFIGQVETIDHQKGKLRVLVSMFGRETPVELDFTQVEKL 236 >gi|217979960|ref|YP_002364107.1| NusG antitermination factor [Methylocella silvestris BL2] gi|217505336|gb|ACK52745.1| NusG antitermination factor [Methylocella silvestris BL2] Length = 176 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 102/176 (57%), Positives = 130/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV VR+GRK+NSER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAAQRGLSAKFEEILVPTEQVVEVRRGRKINSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K ++D +YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S Sbjct: 61 FPGYVLVKCDLSDDIYHLIKNTPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V+DGPFASFNG V+ VDE +SRV V V IFGR TPVEL Y QVEK+ Sbjct: 121 ISFEIGETVRVADGPFASFNGTVEEVDESRSRVKVAVSIFGRATPVELEYAQVEKV 176 >gi|288957408|ref|YP_003447749.1| transcriptional antiterminator [Azospirillum sp. B510] gi|288909716|dbj|BAI71205.1| transcriptional antiterminator [Azospirillum sp. B510] Length = 176 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 127/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK ++I + ++ GL+ EI +P+E VV VR+G K+N+ER+F Sbjct: 1 MAARWYVVHVYSGFEKKVSQAIREKAAQKGLEDKFEEILVPTEEVVEVRRGSKINTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ + +K+TPKV FLG G P P++ E E I++QV+ +RP S Sbjct: 61 FPGYVLVKMDLTDESWSLVKNTPKVTDFLGGGGKPQPISQREAERIIHQVQEGFERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE+V VSDGPF SFNG+V+ VDEEKSR+ V V IFGR TPVEL Y QVEKI Sbjct: 121 ITFEVGEQVRVSDGPFTSFNGVVEEVDEEKSRLKVAVSIFGRSTPVELEYTQVEKI 176 >gi|115378476|ref|ZP_01465635.1| transcription termination/antitermination factor NusG [Stigmatella aurantiaca DW4/3-1] gi|310822265|ref|YP_003954623.1| transcription antitermination protein NusG [Stigmatella aurantiaca DW4/3-1] gi|115364538|gb|EAU63614.1| transcription termination/antitermination factor NusG [Stigmatella aurantiaca DW4/3-1] gi|309395337|gb|ADO72796.1| Transcription antitermination protein NusG [Stigmatella aurantiaca DW4/3-1] Length = 180 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S+R+F Sbjct: 1 MAKKWYVVHTYSNFENQAKKSLEEKIRLEGLQDQFGEILIPMEQVVEMVKGEKKTSKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPV 118 FPGY+ ++ + D+ +H +K+TPK+ GF G +N P+P++D+E+ + +Q+ +P Sbjct: 61 FPGYIFVQMDLNDRTWHLVKNTPKITGFPGAAQNQQPTPISDAEVARLTSQISEGTLKPK 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK Sbjct: 121 PKVQFEDGDTVRVIDGPFANFNGTVEEVNPEKGRVKVLVSIFGRATPVELDFMQVEK 177 >gi|154247287|ref|YP_001418245.1| NusG antitermination factor [Xanthobacter autotrophicus Py2] gi|154161372|gb|ABS68588.1| NusG antitermination factor [Xanthobacter autotrophicus Py2] Length = 176 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 100/176 (56%), Positives = 129/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK +SI + + GL L +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREQADQRGLTDLFEQILVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+ QV+ ++RP S Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISESEAMRILQQVQEGIERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 ITFEVGETVKVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEFAQVEKV 176 >gi|158422506|ref|YP_001523798.1| transcription antitermination protein [Azorhizobium caulinodans ORS 571] gi|158329395|dbj|BAF86880.1| transcription antitermination protein [Azorhizobium caulinodans ORS 571] Length = 180 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 128/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK +SI + + L L +I +P+E+VV VR+GRKV++ER+F Sbjct: 5 MAKRWYIVHAYSNFEKKVADSIREQAEQRNLTDLFEQILVPTEKVVEVRRGRKVDTERKF 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I+ QV+ ++RP S Sbjct: 65 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISENEAMRILQQVQEGIERPKPS 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +EVGE V VSDGPFA+FNGIV+ VDE +SR+ V V IFGR TPVEL + QVEK+ Sbjct: 125 ISYEVGETVKVSDGPFATFNGIVEEVDESRSRLKVAVSIFGRATPVELEFGQVEKV 180 >gi|162146512|ref|YP_001600971.1| transcription antitermination protein NusG [Gluconacetobacter diazotrophicus PAl 5] gi|209543489|ref|YP_002275718.1| transcription antitermination protein NusG [Gluconacetobacter diazotrophicus PAl 5] gi|161785087|emb|CAP54631.1| transcription antitermination protein NusG [Gluconacetobacter diazotrophicus PAl 5] gi|209531166|gb|ACI51103.1| NusG antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 176 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 92/176 (52%), Positives = 128/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK + I + ++ GL ++ +PSE VV VR+G+KV++ER+F Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIKEQAAQKGLSDHFGDVLVPSEEVVEVRRGQKVSAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP++ +E + IM Q + V+RP S Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPISGAEADRIMKQAQEGVERPRPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPF SFNG ++ VDE+K+R+ V V IFGR TPV+L Y+QVEK+ Sbjct: 121 ITFEIGEQVRVSDGPFTSFNGTIEEVDEDKARLKVSVSIFGRSTPVDLEYSQVEKL 176 >gi|154253165|ref|YP_001413989.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154157115|gb|ABS64332.1| NusG antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 176 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 130/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ES+ + + GL EI +P+E VV VR+GRK+N+ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVAESLREQAEQQGLSEQFEEILVPTEEVVEVRRGRKINAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ YH +K+TPKV GFLG P P++ +E++ I++QV+ V+RP S Sbjct: 61 FPGYVLVKVDLTDEAYHLVKNTPKVTGFLGADNKPQPISQAEVDRILHQVQEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL Y QVEK+ Sbjct: 121 ITFEIGEQVRVADGPFASFNGFVEEVDEEKARLKVAVSIFGRATPVELEYAQVEKL 176 >gi|182678325|ref|YP_001832471.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182634208|gb|ACB94982.1| NusG antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 176 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + ++ GL EI +P+E+VV +R+GRK+NSER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAAQRGLTEKFEEILVPTEQVVEIRRGRKINSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD++YH IK+TPKV GFLG + P P++D+E + I QV V+RP +S Sbjct: 61 FPGYVLVKCDLTDELYHLIKETPKVTGFLGADKKPMPISDAEADRIKGQVADGVERPKTS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE V V+DGPFASFNGIV+ VDE +SRV V V IFGR TPVEL Y QVEK+ Sbjct: 121 VSFEVGETVRVADGPFASFNGIVEEVDESRSRVKVAVSIFGRATPVELEYGQVEKV 176 >gi|15965096|ref|NP_385449.1| transcription antitermination protein NusG [Sinorhizobium meliloti 1021] gi|307314831|ref|ZP_07594424.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] gi|307322130|ref|ZP_07601504.1| NusG antitermination factor [Sinorhizobium meliloti AK83] gi|15074276|emb|CAC45922.1| Probable transcription antitermination protein [Sinorhizobium meliloti 1021] gi|306892215|gb|EFN23027.1| NusG antitermination factor [Sinorhizobium meliloti AK83] gi|306898945|gb|EFN29592.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] Length = 176 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 134/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLTHLFEKILVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176 >gi|298291420|ref|YP_003693359.1| NusG antitermination factor [Starkeya novella DSM 506] gi|296927931|gb|ADH88740.1| NusG antitermination factor [Starkeya novella DSM 506] Length = 176 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 97/175 (55%), Positives = 128/175 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK +SI + ++ GL L ++ +P+E+VV VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVADSIKEQAAQRGLTDLFEQVLVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+ + E I+ QV+ ++RP S Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPIAEKEAMRILQQVQEGIERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V VSDGPFASFNGIV+ VD+ +SR+ V V IFGR TPVEL + QVEK Sbjct: 121 ITFEVGETVKVSDGPFASFNGIVEEVDDARSRLKVAVSIFGRATPVELEFAQVEK 175 >gi|304391359|ref|ZP_07373301.1| transcription termination/antitermination factor NusG [Ahrensia sp. R2A130] gi|303295588|gb|EFL89946.1| transcription termination/antitermination factor NusG [Ahrensia sp. R2A130] Length = 176 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YSN EKK V+SI + + GL+ L +I +P+E+VV VRKG+KV++ER+F Sbjct: 1 MAMRWYIIHAYSNFEKKVVDSILEQARQKGLEDLFEQILVPTEKVVEVRKGKKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL + MTD+ +H IK+TPKV GFLG+ P P+ D E + I+NQV+ V+RP S Sbjct: 61 FPGYVLARMNMTDQAFHLIKNTPKVTGFLGSDNKPMPIPDREADRILNQVQEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASF+G V+ VDEE++R+ VEV IFGR TPV+L Y QVEK+ Sbjct: 121 VTFEIGESVRVSDGPFASFSGTVEEVDEERARLKVEVSIFGRATPVDLEYAQVEKV 176 >gi|150396194|ref|YP_001326661.1| transcription antitermination protein NusG [Sinorhizobium medicae WSM419] gi|150027709|gb|ABR59826.1| NusG antitermination factor [Sinorhizobium medicae WSM419] Length = 176 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 106/176 (60%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV +R+GRKV++ER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLTHLFEKILVPTEKVVEIRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E + I+ QV+ V+RP S Sbjct: 61 FPGYVLVRADLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEADRILGQVQDGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 ISFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176 >gi|254470483|ref|ZP_05083887.1| transcription termination/antitermination factor NusG [Pseudovibrio sp. JE062] gi|211960794|gb|EEA95990.1| transcription termination/antitermination factor NusG [Pseudovibrio sp. JE062] Length = 177 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 130/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN E+K E+I R + GL+ E+ +P+E+ V VR+GRKV+SER+F Sbjct: 1 MAKRWYIVHAYSNFERKVAEAIKERAQQQGLEDSFDEVLVPTEKFVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K M+D YH I DTPKV GFLG + P P++++E + I+NQV+ V+ P S Sbjct: 61 FPGYVLVKMEMSDDAYHLINDTPKVSGFLGNDKKPMPISEAEAQRILNQVQEGVETPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V VSDGPFASF+G+V+ VDEE++R+ V V IFGR TPVEL Y QV+K+ Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDEERARLKVTVSIFGRATPVELEYGQVDKV 176 >gi|148256408|ref|YP_001240993.1| transcription antitermination protein NusG [Bradyrhizobium sp. BTAi1] gi|146408581|gb|ABQ37087.1| transcription antitermination protein nusG [Bradyrhizobium sp. BTAi1] Length = 185 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 98/175 (56%), Positives = 130/175 (74%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIV YSN EKK ESI + + L+ L ++ +P E+V VR+GRK+++ER+FFP Sbjct: 10 KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPLEKVTEVRRGRKIDAERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I+NQ++ V+RP SSV Sbjct: 70 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILNQMQEGVERPKSSVS 129 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL +NQVEKIV Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFNQVEKIV 184 >gi|316933506|ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1] gi|315601220|gb|ADU43755.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1] Length = 176 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|296447965|ref|ZP_06889872.1| NusG antitermination factor [Methylosinus trichosporium OB3b] gi|296254532|gb|EFH01652.1| NusG antitermination factor [Methylosinus trichosporium OB3b] Length = 176 Score = 187 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 125/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI ++ L EI +P+E+VV VR+GRKV+SER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRSLSDKFEEILVPTEQVVEVRRGRKVSSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K ++D V+ IK+TPKV GFLG P P++++E I QV V+RP + Sbjct: 61 FPGYVLVKCDLSDAVFSLIKNTPKVTGFLGADNKPMPISEAEALRIKGQVAEGVERPKPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE V V+DGPFASFNG+V+ VD+ +SR+ V V IFGR TPVEL + QVEK+ Sbjct: 121 ISFEVGETVRVADGPFASFNGVVEEVDDARSRLKVAVSIFGRPTPVELEFGQVEKV 176 >gi|39936337|ref|NP_948613.1| transcription antitermination protein NusG [Rhodopseudomonas palustris CGA009] gi|192292063|ref|YP_001992668.1| transcription antitermination protein NusG [Rhodopseudomonas palustris TIE-1] gi|39650192|emb|CAE28715.1| transcription antitermination protein, NusG [Rhodopseudomonas palustris CGA009] gi|192285812|gb|ACF02193.1| NusG antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 176 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIKEQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|222085663|ref|YP_002544193.1| transcription termination/antitermination factor NusG [Agrobacterium radiobacter K84] gi|221723111|gb|ACM26267.1| transcription termination/antitermination factor NusG [Agrobacterium radiobacter K84] Length = 176 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 136/176 (77%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKAKQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP +S Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+ Sbjct: 121 VSFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176 >gi|209884793|ref|YP_002288650.1| transcription termination/antitermination factor NusG [Oligotropha carboxidovorans OM5] gi|209872989|gb|ACI92785.1| transcription termination/antitermination factor NusG [Oligotropha carboxidovorans OM5] Length = 176 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 131/176 (74%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + L+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMDLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|328543344|ref|YP_004303453.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1] gi|326413089|gb|ADZ70152.1| NusG antitermination factor [Polymorphum gilvum SL003B-26A1] Length = 176 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK +SI + ++ GL L EI +P E+VV VR+GRKV++ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVADSIREKAAQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD+ +H IK+TPKV GFLGT + P P+++SE + I++QV+ V+RP S Sbjct: 61 FPGYVLVKMEMTDEAFHLIKNTPKVTGFLGTDQKPMPISESEAQRILHQVQEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+KI Sbjct: 121 ISFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKI 176 >gi|146340039|ref|YP_001205087.1| transcription antitermination protein NusG [Bradyrhizobium sp. ORS278] gi|146192845|emb|CAL76850.1| component in transcription antitermination [Bradyrhizobium sp. ORS278] Length = 185 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 96/175 (54%), Positives = 128/175 (73%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIV YSN EKK ESI + + L+ L ++ +P E V VR+GRK+N+ER+FFP Sbjct: 10 KRWYIVHAYSNFEKKVAESIREQAKQRNLEDLFEQVLVPIENVTEVRRGRKINAERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K +TD+ +H IK+TPKV GFLG P P+++ E I+NQ++ V+RP SSV Sbjct: 70 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEGEAMRILNQMQEGVERPKSSVS 129 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE+GE V V+DGPFASF+G+V+ +DE +SR+ V V IFGR TPVEL +NQVEK+V Sbjct: 130 FEIGENVRVADGPFASFSGVVEEIDEARSRLKVAVSIFGRATPVELEFNQVEKVV 184 >gi|325293351|ref|YP_004279215.1| Transcription antitermination protein nusG [Agrobacterium sp. H13-3] gi|325061204|gb|ADY64895.1| Transcription antitermination protein nusG [Agrobacterium sp. H13-3] Length = 176 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 110/176 (62%), Positives = 138/176 (78%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GLDHL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLDHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+ Sbjct: 121 VSFEVGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176 >gi|90424962|ref|YP_533332.1| transcription antitermination protein NusG [Rhodopseudomonas palustris BisB18] gi|90106976|gb|ABD89013.1| transcription antitermination protein nusG [Rhodopseudomonas palustris BisB18] Length = 176 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 131/176 (74%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRK+++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++ E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEPEAMRILHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|256821650|ref|YP_003145613.1| NusG antitermination factor [Kangiella koreensis DSM 16069] gi|256795189|gb|ACV25845.1| NusG antitermination factor [Kangiella koreensis DSM 16069] Length = 177 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E K + R+ +GL+ E+ +P+E VV +R G+K SER+F Sbjct: 1 MALRWYVVQAFSGYENKVKTMLEERIQLAGLEDKFGEVLVPTEEVVEMRAGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M ++ + +++TP+V+GF+G + P+P+++ E I+N++E + +P Sbjct: 61 FPGYVLVQMDMDEESWQVVRNTPRVMGFIGGTSDRPAPISEKEANAILNRIEDSGDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V+DGPFA FNG+V++V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 KVLFEPGEMVRVTDGPFADFNGVVESVNYEKSRLQVSVSIFGRSTPVELEFSQVEK 176 >gi|323136001|ref|ZP_08071084.1| NusG antitermination factor [Methylocystis sp. ATCC 49242] gi|322399092|gb|EFY01611.1| NusG antitermination factor [Methylocystis sp. ATCC 49242] Length = 176 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 98/176 (55%), Positives = 125/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI ++ GL EI +P+E+VV VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREGAAQRGLTDAFEEILVPTEQVVEVRRGRKVSTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD V+ IK+TPKV GFLG P P+++ E I QV V+RP + Sbjct: 61 FPGYVLVKCNLTDPVFSLIKNTPKVTGFLGADNKPMPISEEEAMRIKGQVAEGVERPKPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL + QVEK+ Sbjct: 121 ISFEVGETVRVADGPFASFNGLVEEVDEARSRLKVAVSIFGRPTPVELEFGQVEKV 176 >gi|115525607|ref|YP_782518.1| transcription antitermination protein NusG [Rhodopseudomonas palustris BisA53] gi|115519554|gb|ABJ07538.1| transcription antitermination protein nusG [Rhodopseudomonas palustris BisA53] Length = 176 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVAESIREQSKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|297182720|gb|ADI18876.1| transcription antiterminator [uncultured Pseudomonadales bacterium HF0010_05E14] Length = 177 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+V YS E K +I R+ L EI +P+E VV ++ G+K SER+F Sbjct: 1 MSKQWYVVHAYSGYENKVATAIEERIKLHNLQDKFGEIMVPTEEVVEMKGGQKRTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+ + D+ +H +KDTP+V+GF+G E PSP+++ E + I+ +V+ + + P Sbjct: 61 FPGYVLVNMELDDESWHLVKDTPRVMGFIGGKREKPSPISEKEADIILRRVQDSGETPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF FNG V+ V+ EKS++ V V IFGR TPVEL + QVEK Sbjct: 121 KTMFEAGEMVRVTDGPFNDFNGTVEEVNYEKSKLRVAVSIFGRSTPVELDFTQVEK 176 >gi|15889255|ref|NP_354936.1| transcription antitermination protein NusG [Agrobacterium tumefaciens str. C58] gi|15157085|gb|AAK87721.1| transcription antitermination protein NusG [Agrobacterium tumefaciens str. C58] Length = 176 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 109/176 (61%), Positives = 137/176 (77%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL YNQVEK+ Sbjct: 121 VSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV 176 >gi|92117079|ref|YP_576808.1| transcription antitermination protein NusG [Nitrobacter hamburgensis X14] gi|91799973|gb|ABE62348.1| transcription antitermination protein nusG [Nitrobacter hamburgensis X14] Length = 176 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 133/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK +ESI + + GL+ L ++ +P+E+V +R+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVLESIREQAKQRGLEDLFEQVLVPTEKVTEIRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|227821742|ref|YP_002825712.1| transcription antitermination protein NusG [Sinorhizobium fredii NGR234] gi|227340741|gb|ACP24959.1| possible transcription antitermination protein NusG [Sinorhizobium fredii NGR234] Length = 176 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 109/176 (61%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLGT P P+ D E E I+ QV+ V+RP S Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGTDSKPVPIPDHEAERILGQVQDGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V VSDGPFASFNGIV++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 VSFEIGEQVRVSDGPFASFNGIVQDVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176 >gi|209964025|ref|YP_002296940.1| transcription antitermination protein NusG [Rhodospirillum centenum SW] gi|209957491|gb|ACI98127.1| Transcription antitermination protein NusG, putative [Rhodospirillum centenum SW] Length = 176 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 94/176 (53%), Positives = 126/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK ++I + + GL+ EI +P+E +V VR+G KVN+ER+F Sbjct: 1 MAARWYVVHVYSGFEKKVAQAIREKAGQKGLEEKFEEILVPTEEIVEVRRGAKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K + D+ +H +K+TPKV GFLG G P P+++ E I+NQV+ ++RP S Sbjct: 61 FPGYVLVKMELQDETWHLVKNTPKVTGFLGGGGKPQPISEGEAMRILNQVKEGIERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE+V V+DGPF SF G V+ VDE+K+RV V V IFGR TPVEL Y QVEK+ Sbjct: 121 IQFEVGEQVRVTDGPFTSFTGYVEEVDEDKARVKVAVSIFGRATPVELEYTQVEKV 176 >gi|91977669|ref|YP_570328.1| transcription antitermination protein NusG [Rhodopseudomonas palustris BisB5] gi|91684125|gb|ABE40427.1| transcription antitermination protein nusG [Rhodopseudomonas palustris BisB5] Length = 176 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 131/176 (74%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P+++SE I++QV+ V+RP S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|86749396|ref|YP_485892.1| transcription antitermination protein NusG [Rhodopseudomonas palustris HaA2] gi|86572424|gb|ABD06981.1| transcription antitermination protein nusG [Rhodopseudomonas palustris HaA2] Length = 176 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|114328705|ref|YP_745862.1| transcription antitermination protein NusG [Granulibacter bethesdensis CGDNIH1] gi|114316879|gb|ABI62939.1| transcription antitermination protein nusG [Granulibacter bethesdensis CGDNIH1] Length = 176 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 127/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK + I ++GL EI +PSE VV +R+G+KVN+ER+F Sbjct: 1 MAKRWYVVHVYSGFEKKIAQQIRETAVQNGLIDHFDEILVPSEEVVELRRGQKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD +H ++DTP+V GFLG+ PSP++++E + I+ Q + V+RP + Sbjct: 61 FPGYVLVKMELTDDTWHLVRDTPRVTGFLGSRTRPSPISEAEADRILRQAQEGVERPRPA 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE++ V+DGPF SFNG+V+ VDEEK RV V V IFGR TPVEL Y QVEK+ Sbjct: 121 VLFEVGEQIRVADGPFTSFNGVVEEVDEEKGRVKVSVSIFGRSTPVELEYGQVEKV 176 >gi|90020566|ref|YP_526393.1| transcription antitermination protein nusG [Saccharophagus degradans 2-40] gi|89950166|gb|ABD80181.1| transcription antitermination protein nusG [Saccharophagus degradans 2-40] Length = 177 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 119/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK +I R+ + + ++ +P+E V+ +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKKVAAAIKERIELNNMQDSFGDVLVPTEEVIEIRAGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD +H +K+TP+V+GF+G + P+P+T+ E + I+ +V+ + +P Sbjct: 61 FPGYVLVQMELTDDAWHLVKETPRVMGFIGGKADRPAPITEKEAQLILQRVDDSADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK+ Sbjct: 121 KTLFEPGEMVRVTDGPFNDFNGVVEEVNYEKSKLQVAVLIFGRSTPVELEFGQVEKV 177 >gi|299135273|ref|ZP_07028464.1| NusG antitermination factor [Afipia sp. 1NLS2] gi|298590250|gb|EFI50454.1| NusG antitermination factor [Afipia sp. 1NLS2] Length = 176 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKTS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE V V+DGPFASF+G+V+ VD+ +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDDARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|190891342|ref|YP_001977884.1| transcription antitermination protein [Rhizobium etli CIAT 652] gi|190696621|gb|ACE90706.1| transcription antitermination protein [Rhizobium etli CIAT 652] gi|327194521|gb|EGE61379.1| transcription antitermination protein [Rhizobium etli CNPAF512] Length = 176 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 106/176 (60%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176 >gi|254785051|ref|YP_003072479.1| transcription termination/antitermination factor NusG [Teredinibacter turnerae T7901] gi|237686030|gb|ACR13294.1| transcription termination/antitermination factor NusG [Teredinibacter turnerae T7901] Length = 177 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKKVATALKERIELYGMQDSFGEVLVPTEEVVEMRGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD E E I+ +V+ + +P Sbjct: 61 FPGYVLVQMELNDDAWHLVKETPRVMGFIGGKADKPAPITDKEAELILQRVDDSADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176 >gi|83594032|ref|YP_427784.1| transcription antitermination protein NusG [Rhodospirillum rubrum ATCC 11170] gi|83576946|gb|ABC23497.1| transcription antitermination protein nusG [Rhodospirillum rubrum ATCC 11170] Length = 176 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 93/176 (52%), Positives = 131/176 (74%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWY++ VYS E K +SI + + G+D + E+ +P+E +V VR+G KVN+ER+F Sbjct: 1 MTARWYVIHVYSGFENKVAQSIREQAIQKGMDSRIEEVLVPTEEIVEVRRGAKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K ++D+ +H +K+T KV GFLG PSP++D E E I++QV+ ++RP S Sbjct: 61 FPGYVLVKMDLSDETWHLVKNTAKVTGFLGGRGRPSPISDREAERILHQVQEGIERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F+VGE+V V DGPF SFNG+V++VDEEK+R+ V V IFGR TPVEL Y+QVEK+ Sbjct: 121 ITFDVGEQVRVCDGPFTSFNGMVEDVDEEKARLKVSVSIFGRSTPVELEYSQVEKV 176 >gi|58039757|ref|YP_191721.1| transcription antitermination protein NusG [Gluconobacter oxydans 621H] gi|58002171|gb|AAW61065.1| Transcription antitermination protein NusG [Gluconobacter oxydans 621H] Length = 176 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 92/176 (52%), Positives = 127/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK I + ++ GL +I +PSE V +R+GRKVN+ER+F Sbjct: 1 MAKRWYVVHVYSGFEKKIASHIQEQAAQKGLSDHFEQILVPSEDVTEMRRGRKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H +KDTPKV GFLGT P+P+T +E + IM Q + V+RP SS Sbjct: 61 FPGYVLVKMELTDEAWHLVKDTPKVTGFLGTRNRPTPITAAEADRIMKQAQEGVERPRSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V V+DGPF SF G++++VD+E+ R+ V V IFGR TPV+L + QVEK+ Sbjct: 121 LSFEIGEQVRVADGPFTSFTGMIEDVDDERQRLKVSVSIFGRSTPVDLDFTQVEKL 176 >gi|86357292|ref|YP_469184.1| transcription antitermination protein NusG [Rhizobium etli CFN 42] gi|86281394|gb|ABC90457.1| transcription antitermination protein [Rhizobium etli CFN 42] Length = 176 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S Sbjct: 61 FPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 VTFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176 >gi|222148352|ref|YP_002549309.1| transcription antitermination protein NusG [Agrobacterium vitis S4] gi|221735340|gb|ACM36303.1| transcription antitermination protein [Agrobacterium vitis S4] Length = 176 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 108/176 (61%), Positives = 138/176 (78%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEKARQKGLGHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P+ D E + I+ QV+ V+RP SS Sbjct: 61 FPGYVLVRANLTDEVYHLIKNTPKVTGFLGSDNKPVPIPDYEADRILGQVQEGVERPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNG+V++VDEE+SR+ VEV IFGR TPVEL Y+QVEK+ Sbjct: 121 LSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYSQVEKV 176 >gi|163759401|ref|ZP_02166487.1| transcription antitermination protein NusG [Hoeflea phototrophica DFL-43] gi|162283805|gb|EDQ34090.1| transcription antitermination protein NusG [Hoeflea phototrophica DFL-43] Length = 176 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 134/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK +SI + + GL HL +I +P E+VV VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVADSIEEQARQKGLSHLFEKILVPVEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYV+++A +TD+ +H IK+TPKV GFLG+ P P+ DSE E I+ QV+ V+RP S Sbjct: 61 FPGYVMVRADLTDEAFHLIKNTPKVTGFLGSDSKPVPIPDSEAERILTQVQEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 IAFEIGEQVRVSDGPFASFNGTVQEVDEERSRLKVEVSIFGRATPVELEYGQVEKV 176 >gi|209548922|ref|YP_002280839.1| transcription antitermination protein NusG [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534678|gb|ACI54613.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 176 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDHEAERILGQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176 >gi|85715149|ref|ZP_01046133.1| transcription antitermination protein NusG [Nitrobacter sp. Nb-311A] gi|85698064|gb|EAQ35937.1| transcription antitermination protein NusG [Nitrobacter sp. Nb-311A] Length = 176 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|116251526|ref|YP_767364.1| transcription antitermination protein NusG [Rhizobium leguminosarum bv. viciae 3841] gi|218677875|ref|ZP_03525772.1| transcription antitermination protein NusG [Rhizobium etli CIAT 894] gi|241204152|ref|YP_002975248.1| transcription antitermination protein NusG [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115256174|emb|CAK07255.1| putative transcription antitermination protein [Rhizobium leguminosarum bv. viciae 3841] gi|240858042|gb|ACS55709.1| NusG antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 176 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 135/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK E I + + GL+HL +I +P+E+VV VR+GRKV+SER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYV+++A +TD+ YH IK+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S Sbjct: 61 FPGYVMVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V VSDGPFASFNG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 ITFEIGEQVRVSDGPFASFNGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 176 >gi|312115370|ref|YP_004012966.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311220499|gb|ADP71867.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 176 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 100/176 (56%), Positives = 128/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK +SI R + +GLD +I +P E VV VR+GRKV +ER+F Sbjct: 1 MTKRWYIVHAYSNFEKKVADSIRERAAAAGLDECFEDIVVPMEEVVEVRRGRKVATERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K M D+ + IK+TPKV GFLG P P+++ E + I+NQV+ V+RP S Sbjct: 61 FPGYVLVKMDMNDRAFLLIKNTPKVTGFLGADNKPQPISEIEAQRILNQVKEGVERPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V V+DGPFASF+G V+ VDEE++R+ V V IFGR TPVEL Y QVEKI Sbjct: 121 ISFEIGEQVRVADGPFASFSGHVEEVDEERARLKVAVSIFGRATPVELEYAQVEKI 176 >gi|192359543|ref|YP_001981196.1| transcription termination/antitermination factor NusG [Cellvibrio japonicus Ueda107] gi|190685708|gb|ACE83386.1| transcription termination/antitermination factor NusG [Cellvibrio japonicus Ueda107] Length = 177 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK S+ R++ G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKKVAASLRERVALHGMEDSFGEILVPTEEVVEMRGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +KDTP+V+GF+G + P+P+T+ E E I+ +V+ ++++P Sbjct: 61 FPGYVLVQMELNDDTWHLVKDTPRVMGFIGGKADQPAPITEKEAEAILRRVDDSMEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ +K+R+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKNRLRVAVLIFGRSTPVELEFGQVEK 176 >gi|170750243|ref|YP_001756503.1| NusG antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656765|gb|ACB25820.1| NusG antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 177 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 127/176 (72%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+VV VR+GRKV++ER+F Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV V RP Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGVDRPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S+ FE+GE V V+DGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK Sbjct: 121 SISFEIGETVRVADGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYAQVEK 176 >gi|108758111|ref|YP_631275.1| transcription termination/antitermination factor NusG [Myxococcus xanthus DK 1622] gi|108461991|gb|ABF87176.1| transcription termination/antitermination factor NusG [Myxococcus xanthus DK 1622] Length = 180 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YSN E +A +S+ ++ GL EI IP E+VV + KG K S R+F Sbjct: 1 MAMKWYVVHTYSNFENQAKKSLEEKVRLEGLQDQFGEILIPMEQVVEMVKGEKKTSRRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPV 118 FPGY+ ++ + D+ H +K+TPK+ GF GT +NP P++D E+ + +Q+ +P Sbjct: 61 FPGYIFVQMELNDRTLHLVKNTPKITGFPGTVQNQNPLPISDQEVARLTSQISEGTLKPK 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F+ G+ V V DGPFA+FNG V+ V+ EK RV V V IFGR TPVEL + QVEK Sbjct: 121 PKVQFDDGDTVRVIDGPFANFNGTVEEVNAEKGRVKVLVSIFGRATPVELDFMQVEK 177 >gi|117924143|ref|YP_864760.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1] gi|117607899|gb|ABK43354.1| transcription antitermination protein nusG [Magnetococcus sp. MC-1] Length = 176 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 91/176 (51%), Positives = 124/176 (70%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY++ YS EK+ S+ ++ +G+ EI +PSE V+ +RKG KV SER+F Sbjct: 1 MSKRWYVIHAYSGFEKRVKSSLEEKVRLTGMSKYFDEILVPSEEVIELRKGAKVTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K + D+ +H +KD PKV GFLG G P P++D E+E I+ QVE +++P Sbjct: 61 FPGYVLVKMDLNDETWHLVKDIPKVAGFLGGGGRPQPLSDREVEKILQQVETGMEKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F VGE+V V+DGPF SFNG+V+ V+E+KSR+ V V IFGR TPVEL + QVEKI Sbjct: 121 VSFAVGEQVRVTDGPFVSFNGVVEEVEEDKSRLKVSVSIFGRATPVELDFIQVEKI 176 >gi|147676640|ref|YP_001210855.1| transcription antiterminator [Pelotomaculum thermopropionicum SI] gi|146272737|dbj|BAF58486.1| transcription antiterminator [Pelotomaculum thermopropionicum SI] Length = 175 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+R+ Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ V+ P + Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQMG--VEEPRTR 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V F VGE + V GPF +F G ++ ++ EKS+V V + +FGR TPVEL + QVEKI+ Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKII 175 >gi|75675537|ref|YP_317958.1| transcription antitermination protein NusG [Nitrobacter winogradskyi Nb-255] gi|74420407|gb|ABA04606.1| transcription antitermination protein nusG [Nitrobacter winogradskyi Nb-255] Length = 176 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 132/176 (75%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN EKK ESI + + GL+ L ++ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K +TD+ +H IK+TPKV GFLG P P++++E IM+QV+ V+RP +S Sbjct: 61 FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRIMHQVQEGVERPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE V V+DGPFASF+G+V+ VDE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 121 VSFEVGENVRVADGPFASFSGVVEEVDEARSRVKVAVSIFGRATPVELEFGQVEKV 176 >gi|307946270|ref|ZP_07661605.1| transcription termination/antitermination factor NusG [Roseibium sp. TrichSKD4] gi|307769934|gb|EFO29160.1| transcription termination/antitermination factor NusG [Roseibium sp. TrichSKD4] Length = 177 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 100/176 (56%), Positives = 127/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL L EI +P E+V VR+GRKV +ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVTEVRRGRKVEAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S Sbjct: 61 FPGYVLVKMDMTNEAFHLIKDTPKVTGFLGADQKPIPIPEREALQIINQVQEGVDRPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+ Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176 >gi|329114824|ref|ZP_08243581.1| Transcription antitermination protein NusG [Acetobacter pomorum DM001] gi|326695955|gb|EGE47639.1| Transcription antitermination protein NusG [Acetobacter pomorum DM001] Length = 188 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 128/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F Sbjct: 13 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 72 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+ Sbjct: 73 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 132 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+ Sbjct: 133 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 188 >gi|296131823|ref|YP_003639070.1| NusG antitermination factor [Thermincola sp. JR] gi|296030401|gb|ADG81169.1| NusG antitermination factor [Thermincola potens JR] Length = 174 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 110/176 (62%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++ YS E K ++ R+ + + I +P E V ++ G+K ++R+ Sbjct: 1 MEKQWYVIHTYSGYENKVKANLEKRIESMNMGDKIFRILVPMEDEVEIKDGKKKVAKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ +MTD ++ +++T V GF+G+G P P+ ++E+ HI+ Q+ V+ P + Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTSGVTGFVGSGSKPIPLHEAEVRHILRQMG--VEEPRAK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+G+ V V+ GPF +F G ++ + +K ++ V V +FGR TPVEL Y QVE++ Sbjct: 119 IDFELGQNVRVTSGPFENFIGSIEEIYPDKGKIKVLVSMFGRETPVELEYGQVERL 174 >gi|163853396|ref|YP_001641439.1| transcription termination/antitermination factor NusG [Methylobacterium extorquens PA1] gi|188583667|ref|YP_001927112.1| NusG antitermination factor [Methylobacterium populi BJ001] gi|218532254|ref|YP_002423070.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4] gi|240140814|ref|YP_002965294.1| transcription termination factor [Methylobacterium extorquens AM1] gi|254563324|ref|YP_003070419.1| transcription termination factor [Methylobacterium extorquens DM4] gi|163665001|gb|ABY32368.1| transcription termination/antitermination factor NusG [Methylobacterium extorquens PA1] gi|179347165|gb|ACB82577.1| NusG antitermination factor [Methylobacterium populi BJ001] gi|218524557|gb|ACK85142.1| NusG antitermination factor [Methylobacterium chloromethanicum CM4] gi|240010791|gb|ACS42017.1| transcription termination factor [Methylobacterium extorquens AM1] gi|254270602|emb|CAX26605.1| transcription termination factor [Methylobacterium extorquens DM4] Length = 177 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 99/177 (55%), Positives = 128/177 (72%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN E K +SI + ++ GL L E+ +P+E+V VR+GRKV++ER+F Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLTELFDEVMVPTEKVTEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV+ V RP Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKAKPVPIPDAEAERIKGQVQEGVDRPKH 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V FE+GE V VSDGPFASFNG V+ +D+ +SR+ V V IFGR TPVEL Y QVEK+ Sbjct: 121 TVSFEIGETVRVSDGPFASFNGTVEEIDDARSRLKVAVSIFGRATPVELEYGQVEKV 177 >gi|254501154|ref|ZP_05113305.1| transcription termination/antitermination factor NusG [Labrenzia alexandrii DFL-11] gi|222437225|gb|EEE43904.1| transcription termination/antitermination factor NusG [Labrenzia alexandrii DFL-11] Length = 176 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 100/176 (56%), Positives = 129/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MT++ +H I+DTPKV GFLG + P P+ + E I+NQV+ V RP S Sbjct: 61 FPGYVLVKMDMTNEAFHLIRDTPKVTGFLGADQKPMPIPEKEALRIINQVQEGVDRPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+ Sbjct: 121 VSFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176 >gi|258541216|ref|YP_003186649.1| transcription antitermination protein NusG [Acetobacter pasteurianus IFO 3283-01] gi|256632294|dbj|BAH98269.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-01] gi|256635351|dbj|BAI01320.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-03] gi|256638406|dbj|BAI04368.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-07] gi|256641460|dbj|BAI07415.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-22] gi|256644515|dbj|BAI10463.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-26] gi|256647570|dbj|BAI13511.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-32] gi|256650623|dbj|BAI16557.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653614|dbj|BAI19541.1| transcription antitermination factor NusG [Acetobacter pasteurianus IFO 3283-12] Length = 176 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 99/176 (56%), Positives = 128/176 (72%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK + I + GL + EI +PSE V+ VR+G+KVN+ER+F Sbjct: 1 MAKRWYVVHVYSGFEKKIAQHIREEAEQKGLSDHIDEILVPSEEVIEVRRGQKVNTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD+ +H +KDTPKV GFLGT P+P++ +E E I+ Q E VQ P S+ Sbjct: 61 FPGYVLVKMEMTDETWHLVKDTPKVTGFLGTRNRPTPISAAEAERIIKQTEEGVQHPRSA 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE++ V+DGPF SFNG+++ VDEEK R+ V V IFGR TPV+L YNQVEK+ Sbjct: 121 VSFEVGEQIRVADGPFTSFNGVIEEVDEEKGRLKVSVSIFGRSTPVDLEYNQVEKL 176 >gi|114319607|ref|YP_741290.1| transcription antitermination protein nusG [Alkalilimnicola ehrlichii MLHE-1] gi|114226001|gb|ABI55800.1| transcription antitermination protein nusG [Alkalilimnicola ehrlichii MLHE-1] Length = 177 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 126/176 (71%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F Sbjct: 1 MAKRWYVIHAYSGFEKQVKRSLEERIKRAGMEDKFGEILVPTEEVVEMREGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D+ +H +K+ P+V+GF+G + P+P++D E E I+++V+ ++P Sbjct: 61 FPGYVLVQMELDDETWHLVKEVPRVMGFIGGRSDRPAPISDREAEQILDRVKEGAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KVLFEVGEMVRVTDGPFADFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFDQVEK 176 >gi|83858578|ref|ZP_00952100.1| transcription antitermination protein NusG [Oceanicaulis alexandrii HTCC2633] gi|83853401|gb|EAP91253.1| transcription antitermination protein NusG [Oceanicaulis alexandrii HTCC2633] Length = 177 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 125/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYIV YSN EKK E+I + GL+ E+ +P+E VV VR+GRKVN+ER++ Sbjct: 1 MAAKWYIVHAYSNFEKKVAEAIKAEAALQGLEDKFEEVLVPTEEVVEVRRGRKVNAERKY 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD+ YH +KDTP+V GFLG+G P+PV ++E+ IM Q+E +RP + Sbjct: 61 FPGYVLVKMDMTDEAYHLVKDTPRVTGFLGSGRRPTPVPEAEVRRIMGQMEEDAERPRPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EVGE V V DG F SFNG+V+ VD+EK + V + IFGR TPVEL Y QVEKI Sbjct: 121 VSYEVGETVRVIDGHFQSFNGLVEEVDDEKGVLKVAINIFGRATPVELEYAQVEKI 176 >gi|220921885|ref|YP_002497186.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219946491|gb|ACL56883.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 177 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 101/177 (57%), Positives = 129/177 (72%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV +RP + Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVAEGTERPKA 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ FEVGE V VSDGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+ Sbjct: 121 SISFEVGESVRVSDGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177 >gi|229592915|ref|YP_002875034.1| transcription antitermination protein NusG [Pseudomonas fluorescens SBW25] gi|312963379|ref|ZP_07777862.1| transcription termination/antitermination factor [Pseudomonas fluorescens WH6] gi|229364781|emb|CAY52786.1| transcription antitermination protein [Pseudomonas fluorescens SBW25] gi|311282459|gb|EFQ61057.1| transcription termination/antitermination factor [Pseudomonas fluorescens WH6] Length = 177 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177 >gi|296117260|ref|ZP_06835852.1| transcription antitermination protein NusG [Gluconacetobacter hansenii ATCC 23769] gi|295976213|gb|EFG82999.1| transcription antitermination protein NusG [Gluconacetobacter hansenii ATCC 23769] Length = 176 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 124/176 (70%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++ VYS EKK + I + ++ GL EI +PSE V VR+G+KVNSER+F Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEVRRGQKVNSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ +E E IM Q + V+R S Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTKPSPIPKAEAERIMKQAQEGVERVRPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE++ V+DGPF SFNG ++ VDEEK R+ V V IFGR TPV+L YNQVEK+ Sbjct: 121 VTFEVGEQIRVADGPFTSFNGTIEEVDEEKGRLTVSVSIFGRSTPVDLEYNQVEKV 176 >gi|116625380|ref|YP_827536.1| transcription antitermination protein nusG [Candidatus Solibacter usitatus Ellin6076] gi|116228542|gb|ABJ87251.1| transcription antitermination protein nusG [Candidatus Solibacter usitatus Ellin6076] Length = 239 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 73/175 (41%), Positives = 110/175 (62%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS E K ES+ R G + +I IP+E VV +R G+KV S+R + Sbjct: 65 AKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVY 124 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ M D ++H +K+TP+V GF+G G +P P++ E+ I+ + ++ +RP + Sbjct: 125 PGYVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKM 184 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE + V + DGPFA+F+G V V+ E+ + V V IFGR TPVEL + QVEK+ Sbjct: 185 TFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239 >gi|224370702|ref|YP_002604866.1| NusG [Desulfobacterium autotrophicum HRM2] gi|223693419|gb|ACN16702.1| NusG [Desulfobacterium autotrophicum HRM2] Length = 176 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 111/176 (63%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+V VYS E K ++ +++ SG EI +P+E VV + G+K S R+F Sbjct: 1 MSLKWYVVHVYSGFEHKVKLALEDKVANSGCADSFDEILVPTEHVVELVNGKKRESSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY+L++ + D+ +H + TPKV GFLG P+P++D+E I+ ++E +P Sbjct: 61 YPGYILVRMSLNDETWHIVNSTPKVTGFLGGKNKPAPISDAEAAAIVERMEQGKNKPQPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +FE G+ V V+DGPF +FNG V+ + +K +V V V IFGR TPVEL + QV KI Sbjct: 121 YYFEPGDDVRVTDGPFTNFNGTVEESNPDKGKVRVLVSIFGRATPVELDFVQVTKI 176 >gi|170738717|ref|YP_001767372.1| NusG antitermination factor [Methylobacterium sp. 4-46] gi|168192991|gb|ACA14938.1| NusG antitermination factor [Methylobacterium sp. 4-46] Length = 177 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 100/177 (56%), Positives = 130/177 (73%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYIV YSN E K +SI + ++ GL E+ +P+E+VV VR+GRKV++ER+F Sbjct: 1 MSKRWYIVHAYSNFENKVAQSIKDQAAQRGLLDKFDEVMVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+K +TD+VYH IK+TPKV GFLG + P P+ D+E E I QV+ +RP + Sbjct: 61 FPGYVLVKCDLTDEVYHLIKNTPKVTGFLGADKSKPVPIPDAEAERIKGQVQEGTERPKA 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ FEVGE V V+DGPFASFNG+V+ VDE +SR+ V V IFGR TPVEL Y QVEK+ Sbjct: 121 SISFEVGESVRVADGPFASFNGVVEEVDESRSRLKVAVSIFGRATPVELEYGQVEKV 177 >gi|114704471|ref|ZP_01437379.1| transcription antitermination protein NusG [Fulvimarina pelagi HTCC2506] gi|114539256|gb|EAU42376.1| transcription antitermination protein NusG [Fulvimarina pelagi HTCC2506] Length = 176 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 100/176 (56%), Positives = 129/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL +I +P+E VV VR+GRKVN+ER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTENVVEVRRGRKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TDKV+ IK+TPKV GFLG P P+TD E + I+N ++ V RP + Sbjct: 61 FPGYVLVKAELTDKVFSMIKNTPKVTGFLGPDNRPVPITDKEADQILNHIQEGVDRPKPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++GE+V VSDGPFASFNGIV+ +D E+SR+ VEV IFGR TPV+L + QVEK+ Sbjct: 121 IMFDIGEQVRVSDGPFASFNGIVQEIDGERSRLKVEVSIFGRATPVDLEFGQVEKV 176 >gi|27380527|ref|NP_772056.1| transcription antitermination protein NusG [Bradyrhizobium japonicum USDA 110] gi|27353691|dbj|BAC50681.1| transcription antitermination protein [Bradyrhizobium japonicum USDA 110] Length = 184 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 129/174 (74%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIV YSN EKK ESI + + GL+ L + +P+E+V VR+GRK+++ER+FFP Sbjct: 11 KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFELVLVPTEKVTEVRRGRKIDAERKFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K +TD+ +H IK+TPKV GFLG P P++++E I++QV+ V+RP +SV Sbjct: 71 GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V V+DGPFASF+G+V+ +DE +SRV V V IFGR TPVEL + QVEK+ Sbjct: 131 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 184 >gi|88704396|ref|ZP_01102110.1| Bacterial transcription antitermination protein NusG [Congregibacter litoralis KT71] gi|88701447|gb|EAQ98552.1| Bacterial transcription antitermination protein NusG [Congregibacter litoralis KT71] Length = 177 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMGDRFGDVLVPTEEVVEMRAGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK Sbjct: 121 KTMFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176 >gi|114570357|ref|YP_757037.1| transcription antitermination protein nusG [Maricaulis maris MCS10] gi|114340819|gb|ABI66099.1| transcription antitermination protein nusG [Maricaulis maris MCS10] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 94/176 (53%), Positives = 126/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WYIV YSN EKK ++I S GL+ EI +P+E VV VRKGRK+N+ER++ Sbjct: 1 MSAKWYIVHAYSNFEKKVADAIRIEASIKGLEDKFEEILVPTEDVVEVRKGRKINAERKY 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD+ YH + TPKV GFLG+G+ P PV+++E++ I+ Q+E +RP + Sbjct: 61 FPGYVLVKMDMTDQAYHLVTSTPKVTGFLGSGKKPIPVSENEVKRILGQMEEDAERPRPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E+GE V V DG F SFNG+V+ VD+E R+ V + IFGR TPVEL Y QVEKI Sbjct: 121 VSYEIGETVNVIDGHFQSFNGVVEEVDDENGRLKVAINIFGRATPVELEYAQVEKI 176 >gi|254483533|ref|ZP_05096759.1| transcription termination/antitermination factor NusG [marine gamma proteobacterium HTCC2148] gi|214036190|gb|EEB76871.1| transcription termination/antitermination factor NusG [marine gamma proteobacterium HTCC2148] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK ++ R+ G+ E+ +P+E VV +R G+K SER+F Sbjct: 1 MAMRWYVVHAYSGYEKKVATALQERIELHGMQDRFGEVLVPTEEVVEMRGGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +VE V+ P Sbjct: 61 FPGYVLVQMELGDDSWHLVKETPRVMGFIGGTADTPAPITEAEASAILQRVEQGVEAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEMVRVIDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176 >gi|16127435|ref|NP_421999.1| transcription antitermination protein NusG [Caulobacter crescentus CB15] gi|221236245|ref|YP_002518682.1| transcription antitermination protein NusG [Caulobacter crescentus NA1000] gi|295688156|ref|YP_003591849.1| NusG antitermination factor [Caulobacter segnis ATCC 21756] gi|13424883|gb|AAK25167.1| transcription antitermination protein NusG [Caulobacter crescentus CB15] gi|220965418|gb|ACL96774.1| transcription antitermination protein nusG [Caulobacter crescentus NA1000] gi|295430059|gb|ADG09231.1| NusG antitermination factor [Caulobacter segnis ATCC 21756] Length = 185 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 100/174 (57%), Positives = 128/174 (73%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFP Sbjct: 11 HKWYIVHAYSNFEKKVAESIREQAKNQGLEENFSEILVPTEDVVEIRRGRKVNAERKFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K ++D+ YH IK+TPKV GFLG+G P PV++ E++ I+ +E V P + V Sbjct: 71 GYVLVKMNLSDEAYHLIKNTPKVTGFLGSGSKPMPVSEKEVQRIIGTIEEGVAAPKAVVL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V V+DGPFASFNG V+ VDEEK+R+ V V IFGR TPVEL YNQVEKI Sbjct: 131 YEVGENVRVTDGPFASFNGSVEYVDEEKARLRVTVSIFGRATPVELEYNQVEKI 184 >gi|288942084|ref|YP_003444324.1| NusG antitermination factor [Allochromatium vinosum DSM 180] gi|288897456|gb|ADC63292.1| NusG antitermination factor [Allochromatium vinosum DSM 180] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 82/177 (46%), Positives = 124/177 (70%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY++ YS E + S+ + R+GLD L +I +P+E VV +R G++ SER+F Sbjct: 1 MSKRWYVIHAYSGFEGQVKRSLEDHVKRAGLDELFGQILVPTEEVVEMRGGQQRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+ +TD+ +H +K+ PKV+GF+G G+ P+P+ DS+ + I+ +++ ++P Sbjct: 61 FPGYVLVHMELTDETWHLVKNVPKVMGFIGGTGDRPAPIPDSQADVILQRLQEGGEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E GE V V+DGPF FNG+V++VD +KSRV V V+IFGR TPVEL + QVEK+ Sbjct: 121 KVLYEPGEVVRVTDGPFTDFNGVVEDVDYDKSRVKVSVLIFGRSTPVELEFAQVEKV 177 >gi|53804629|ref|YP_113536.1| transcription antitermination protein NusG [Methylococcus capsulatus str. Bath] gi|53758390|gb|AAU92681.1| transcription antitermination protein NusG [Methylococcus capsulatus str. Bath] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 126/176 (71%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++Q YSN E + S+ R++R+GL+H +I +P+E V+ +R+G++ ER+F Sbjct: 1 MALRWYVIQAYSNFENRVKRSLEERIARAGLEHYFGKILVPTEEVLEMRQGQQRKGERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H ++D P+V+GF+G ++P+P++D+E E I+ +VE V++P Sbjct: 61 FPGYVLVQMELNDDTWHLVRDVPRVLGFVGGTPDHPAPISDAEAEAILARVEEGVKKPKH 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +EVGE V V DGPF FNG+V+ V+ EKS++ V V+IFGR TPVEL + QVEK Sbjct: 121 KVLYEVGEVVRVIDGPFKDFNGVVEEVNYEKSKLRVSVLIFGRSTPVELEFGQVEK 176 >gi|220935504|ref|YP_002514403.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996814|gb|ACL73416.1| NusG antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E S+ R+ R G+ EI +P+E VV +R G+K SER+F Sbjct: 1 MALRWYVVHAYSGFENHVKRSLEERIERYGMQDKFGEILVPTEEVVEMRDGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +KD PKV+GF+G + + P+P++D E ++I+ +++ ++P Sbjct: 61 FPGYVLVQMELDDDTWHLVKDVPKVLGFIGASADKPTPISDKEAQNILQRMQEGAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V DGPF FNG+V+ V+ +K+R+ V V IFGR TPVEL ++QVEK Sbjct: 121 KVLFEAGEVVRVIDGPFNDFNGVVEEVNYDKNRLLVAVQIFGRSTPVELEFHQVEK 176 >gi|218779773|ref|YP_002431091.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01] gi|218761157|gb|ACL03623.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 176 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 112/176 (63%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V VYS E K ++ R++ S ++ IP+E+VV + KG++ S+R+F Sbjct: 1 MALKWYVVHVYSGFENKVKTALEERIASSRFSDKFGQVLIPTEQVVELVKGKRKTSQRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY+L++ + D+ +H + DT KV GFLG PSP++D E I++Q+EA +P Sbjct: 61 YPGYILVQMHLDDETWHLVNDTAKVTGFLGGRNKPSPLSDEEASRIVDQIEAGKLKPQPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V DGPF +FNG V+ V+ EK ++ V V IFGR TPVEL + QV K+ Sbjct: 121 YLFETGDEVRVIDGPFTNFNGSVEAVNPEKGKIKVMVSIFGRATPVELDFVQVTKL 176 >gi|88799206|ref|ZP_01114785.1| transcription antitermination protein NusG [Reinekea sp. MED297] gi|88777965|gb|EAR09161.1| transcription antitermination protein NusG [Reinekea sp. MED297] Length = 177 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK+ S+ ++ + EI +P+E VV +R G+K SER+F Sbjct: 1 MSKRWYVVHAYSGYEKRVAGSLKEQVELQSMQDQFGEILVPTESVVEMRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D+ +H +KDTP+V+GF+G E P+P+T E E I+ +V+ +P Sbjct: 61 YPGYVLVEMEMNDETWHLVKDTPRVMGFIGGTAEKPAPLTTREAEAILQRVKDGADKPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK Sbjct: 121 KTIYEPGEVVRVIDGPFADFNGTVEKVNYEKSRLQVSVSIFGRATPVELEFVQVEK 176 >gi|77461312|ref|YP_350819.1| transcription antitermination protein NusG [Pseudomonas fluorescens Pf0-1] gi|77385315|gb|ABA76828.1| transcription antitermination protein [Pseudomonas fluorescens Pf0-1] Length = 177 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGETVRVNDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177 >gi|302189265|ref|ZP_07265938.1| transcription antitermination protein NusG [Pseudomonas syringae pv. syringae 642] Length = 177 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E + I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEADAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176 >gi|70732893|ref|YP_262662.1| transcription antitermination protein NusG [Pseudomonas fluorescens Pf-5] gi|71734301|ref|YP_276718.1| transcription antitermination protein NusG [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483173|ref|ZP_05637214.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623861|ref|ZP_06456815.1| transcription antitermination protein NusG [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648954|ref|ZP_06480297.1| transcription antitermination protein NusG [Pseudomonas syringae pv. aesculi str. 2250] gi|298489108|ref|ZP_07007130.1| Transcription antitermination protein NusG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|68347192|gb|AAY94798.1| transcription termination/antitermination factor NusG [Pseudomonas fluorescens Pf-5] gi|71554854|gb|AAZ34065.1| transcription termination/antitermination factor NusG [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156420|gb|EFH97518.1| Transcription antitermination protein NusG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322334|gb|EFW78428.1| transcription antitermination protein NusG [Pseudomonas syringae pv. glycinea str. B076] gi|320331992|gb|EFW87928.1| transcription antitermination protein NusG [Pseudomonas syringae pv. glycinea str. race 4] gi|330869443|gb|EGH04152.1| transcription antitermination protein NusG [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879351|gb|EGH13500.1| transcription antitermination protein NusG [Pseudomonas syringae pv. glycinea str. race 4] gi|330988294|gb|EGH86397.1| transcription antitermination protein NusG [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012400|gb|EGH92456.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 177 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176 >gi|319944817|ref|ZP_08019080.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Lautropia mirabilis ATCC 51599] gi|319741931|gb|EFV94355.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Lautropia mirabilis ATCC 51599] Length = 177 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 119/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK +I R+ R+G+ L +I +P+E VV ++ G++ +ERRF Sbjct: 1 MSKRWYVVHAYSGMEKSVGRAIRERVERAGMQDLFGQILVPTEEVVEMKNGQRSITERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D +H +K+T KV GF+G G P+ ++ +E++ IMNQ+ V++P Sbjct: 61 FPGYVLVEMEMNDDTWHLVKNTNKVTGFVGGSGNRPAAISQAEVDKIMNQMAEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V V +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 121 KTLFEIGEMVRVKEGPFADFNGNVEEVNYEKSRLTVSVTIFGRATPVELEFGQVEKL 177 >gi|254516893|ref|ZP_05128951.1| transcription termination/antitermination factor NusG [gamma proteobacterium NOR5-3] gi|219674398|gb|EED30766.1| transcription termination/antitermination factor NusG [gamma proteobacterium NOR5-3] Length = 177 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EKK ++ R+ G+ ++ +P+E VV +R G+K SER+F Sbjct: 1 MAMRWYVVHAYSGYEKKVATALKERIELHGMTDRFGDVLVPTEEVVEMRGGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I++++E + P Sbjct: 61 FPGYVLVQMELGDDTWHLVKETPRVLGFIGGKADAPAPITDAEAQAILSRIEEGTEAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ EKSR++V V+IFGR TPVEL + QVEK Sbjct: 121 KTMFEPGEMVRVVDGPFNDFNGVVEEVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176 >gi|95930698|ref|ZP_01313431.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95133178|gb|EAT14844.1| NusG antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 177 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K ++ R+ G + L E+ +PSE VV ++ G + S R+F Sbjct: 1 MAMQWYGVHTYSGFENKVKLNLEERIKMLGAEDLFGEVLVPSEVVVELKNGERKTSTRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L++ + ++ +H +KDT KV GF+G G P P+ D+E+E I ++E +RP Sbjct: 61 FPGYILVQMELNNETWHIVKDTAKVTGFVGGGTTPPPIPDAEVEKITARMEEGAERPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +EVGE V V DGPF +F GIV++V +K ++ V V IFGRVTPVEL + QVEK Sbjct: 121 VQYEVGETVRVVDGPFLNFTGIVEDVKPDKGKLKVMVSIFGRVTPVELDFIQVEK 175 >gi|89893200|ref|YP_516687.1| hypothetical protein DSY0454 [Desulfitobacterium hafniense Y51] gi|219666473|ref|YP_002456908.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2] gi|89332648|dbj|BAE82243.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536733|gb|ACL18472.1| NusG antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 175 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT WY++ YS E K ++ R+ ++ + + +P E + ++ G+K ++R+ Sbjct: 1 MTKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEIKNGKKKIAKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ MTD ++ +++TP V GF+GTG P P+ D E++ I+ Q+ V+ + Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGTGAKPIPLLDHEVQAILKQMG--VEEVRTR 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + VG+ V V GPF F V+ + E+K ++ V V +FGR TPVEL + QVEK+ Sbjct: 119 VDYTVGQNVRVISGPFKDFIASVREILEDKGKLRVSVSMFGRETPVELDFAQVEKV 174 >gi|237797420|ref|ZP_04585881.1| transcription antitermination protein NusG [Pseudomonas syringae pv. oryzae str. 1_6] gi|330962537|gb|EGH62797.1| transcription antitermination protein NusG [Pseudomonas syringae pv. maculicola str. ES4326] gi|331020270|gb|EGI00327.1| transcription antitermination protein NusG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 177 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177 >gi|148260034|ref|YP_001234161.1| transcription antitermination protein NusG [Acidiphilium cryptum JF-5] gi|326403010|ref|YP_004283091.1| transcription antitermination protein NusG [Acidiphilium multivorum AIU301] gi|146401715|gb|ABQ30242.1| transcription antitermination protein nusG [Acidiphilium cryptum JF-5] gi|325049871|dbj|BAJ80209.1| transcription antitermination protein NusG [Acidiphilium multivorum AIU301] Length = 176 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 85/176 (48%), Positives = 124/176 (70%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++ VYS EKK I ++ GL + ++ +P+E VV +R+ +KVN+ER+F Sbjct: 1 MAKRWYVLHVYSGFEKKIATQIMETAAQKGLADQIEQVMVPAEEVVEIRRAQKVNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MTD +H ++D PKV GFLGT P+P++++E + ++ QV+ + + Sbjct: 61 FPGYVLVKMEMTDDAWHLVRDIPKVTGFLGTKLKPTPISEAEAQRMLQQVQEGTEHRRPA 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE+V V+DGPF SFNG+++++DE+K RV V V IFGR TPVEL Y QVEK+ Sbjct: 121 VVFEIGEQVRVADGPFTSFNGVIEDIDEDKGRVKVSVSIFGRSTPVELEYGQVEKL 176 >gi|197104678|ref|YP_002130055.1| transcription antitermination protein NusG [Phenylobacterium zucineum HLK1] gi|196478098|gb|ACG77626.1| transcription antitermination protein NusG [Phenylobacterium zucineum HLK1] Length = 189 Score = 181 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 102/174 (58%), Positives = 130/174 (74%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVNSER+FFP Sbjct: 15 HKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFP 74 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K MTD+ YH IK+TPKV GFLG+G P PV++ E+E I+ +E V+RP ++ Sbjct: 75 GYVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTIT 134 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE+V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y QVEKI Sbjct: 135 FEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKI 188 >gi|28867842|ref|NP_790461.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato str. DC3000] gi|66047787|ref|YP_237628.1| transcription antitermination protein NusG [Pseudomonas syringae pv. syringae B728a] gi|213969202|ref|ZP_03397340.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato T1] gi|289675473|ref|ZP_06496363.1| transcription antitermination protein NusG [Pseudomonas syringae pv. syringae FF5] gi|301381709|ref|ZP_07230127.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato Max13] gi|302130768|ref|ZP_07256758.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851078|gb|AAO54156.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato str. DC3000] gi|63258494|gb|AAY39590.1| transcription antitermination protein NusG [Pseudomonas syringae pv. syringae B728a] gi|213925880|gb|EEB59437.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato T1] gi|330879467|gb|EGH13616.1| transcription antitermination protein NusG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330899748|gb|EGH31167.1| transcription antitermination protein NusG [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940869|gb|EGH43828.1| transcription antitermination protein NusG [Pseudomonas syringae pv. pisi str. 1704B] gi|330966923|gb|EGH67183.1| transcription antitermination protein NusG [Pseudomonas syringae pv. actinidiae str. M302091] gi|330969834|gb|EGH69900.1| transcription antitermination protein NusG [Pseudomonas syringae pv. aceris str. M302273PT] gi|331018148|gb|EGH98204.1| transcription antitermination protein NusG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 177 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176 >gi|308272991|emb|CBX29595.1| Transcription antitermination protein nusG [uncultured Desulfobacterium sp.] Length = 176 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 115/176 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WYI+ VYS E K ++ +++ + +P+E+VV + KG++ S R+F Sbjct: 1 MSLKWYILHVYSGFENKVKTALEEKIAAYNRPDKFGNVLVPTEQVVELVKGKRKTSTRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYVL++ + D+V+H + DT KV GFLG E P+P++D E E I+N++EA +P Sbjct: 61 YPGYVLVQMDLDDEVWHIVNDTAKVSGFLGGREKPTPISDDEAEQILNRMEAGKLKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +FE G+ + V DGPF +FNG+V+ V+ EK ++ V V IFGR TPVEL + QV KI Sbjct: 121 YYFETGDEIRVVDGPFTNFNGVVEEVNPEKGKIKVLVSIFGRSTPVELEFVQVTKI 176 >gi|330991780|ref|ZP_08315730.1| Transcription antitermination protein nusG [Gluconacetobacter sp. SXCC-1] gi|329761248|gb|EGG77742.1| Transcription antitermination protein nusG [Gluconacetobacter sp. SXCC-1] Length = 176 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 93/176 (52%), Positives = 123/176 (69%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++ VYS EKK + I + ++ GL EI +PSE V +R+G+KVNSER+F Sbjct: 1 MAKRWYVIHVYSGFEKKIAQHITEQAAQKGLADHFGEILVPSEEVTEMRRGQKVNSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ +TD+ +H +KDTPKV GFLG+ PSP+ E E IM Q + V+R S Sbjct: 61 FPGYVLVNMELTDEAWHLVKDTPKVTGFLGSKTRPSPIPKVEAERIMKQAQEGVERVRPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE++ V+DGPF SFNG ++ VDEE+ R+ V V IFGR TPV+L YNQVEK+ Sbjct: 121 VTFEIGEQIRVADGPFTSFNGTIEEVDEERGRLKVSVSIFGRSTPVDLEYNQVEKV 176 >gi|149376698|ref|ZP_01894457.1| transcription antitermination protein NusG [Marinobacter algicola DG893] gi|149359071|gb|EDM47536.1| transcription antitermination protein NusG [Marinobacter algicola DG893] Length = 177 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLRERVALNGLEEKFGEILVPTEEVVEMRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K+TP+V+GF+G + P+P+T+ E E I+ +VE+ +P Sbjct: 61 YPGYVLVQMEMDDGTWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEIVRVTEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176 >gi|118591199|ref|ZP_01548598.1| transcription antitermination protein NusG [Stappia aggregata IAM 12614] gi|118436275|gb|EAV42917.1| transcription antitermination protein NusG [Stappia aggregata IAM 12614] Length = 176 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 129/176 (73%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL L EI +P E+VV VR+GRKV++ER+F Sbjct: 1 MAKRWYIVHAYSNFEKKVAESIREKAEQKGLSDLFEEILVPMEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+K MT++ +H IKDTPKV GFLG + P P+ + E I+NQV+ V RP S Sbjct: 61 FPGYVLVKMEMTNEAFHLIKDTPKVTGFLGADQKPMPIPEKEAMRIINQVQEGVDRPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V VSDGPFASF+G+V+ VD+E++R+ V V IFGR TPVEL + QV+K+ Sbjct: 121 VTFEVGEQVRVSDGPFASFSGLVEEVDDERARLKVAVSIFGRATPVELEFGQVDKL 176 >gi|15599471|ref|NP_252965.1| transcription antitermination protein NusG [Pseudomonas aeruginosa PAO1] gi|116052310|ref|YP_788844.1| transcription antitermination protein NusG [Pseudomonas aeruginosa UCBPP-PA14] gi|152987944|ref|YP_001346211.1| transcription antitermination protein NusG [Pseudomonas aeruginosa PA7] gi|218889397|ref|YP_002438261.1| transcription antitermination protein NusG [Pseudomonas aeruginosa LESB58] gi|254237135|ref|ZP_04930458.1| transcription antitermination protein NusG [Pseudomonas aeruginosa C3719] gi|254242920|ref|ZP_04936242.1| transcription antitermination protein NusG [Pseudomonas aeruginosa 2192] gi|296387168|ref|ZP_06876667.1| transcription antitermination protein NusG [Pseudomonas aeruginosa PAb1] gi|14423808|sp|Q9HWC4|NUSG_PSEAE RecName: Full=Transcription antitermination protein nusG gi|9950494|gb|AAG07663.1|AE004843_5 transcription antitermination protein NusG [Pseudomonas aeruginosa PAO1] gi|115587531|gb|ABJ13546.1| transcription antitermination protein NusG [Pseudomonas aeruginosa UCBPP-PA14] gi|126169066|gb|EAZ54577.1| transcription antitermination protein NusG [Pseudomonas aeruginosa C3719] gi|126196298|gb|EAZ60361.1| transcription antitermination protein NusG [Pseudomonas aeruginosa 2192] gi|150963102|gb|ABR85127.1| transcription termination/antitermination factor NusG [Pseudomonas aeruginosa PA7] gi|218769620|emb|CAW25380.1| transcription antitermination protein NusG [Pseudomonas aeruginosa LESB58] Length = 177 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E + I+ +V + +P Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177 >gi|237749504|ref|ZP_04579984.1| transcription antiterminator [Oxalobacter formigenes OXCC13] gi|229380866|gb|EEO30957.1| transcription antiterminator [Oxalobacter formigenes OXCC13] Length = 195 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY+V VYS EK ++ R+ R G+ EI +P+E VV V+ G+K +ERRFF Sbjct: 20 TMRWYVVHVYSGMEKSVRRALMERIERMGMTDQFGEILVPTEEVVEVKGGQKSVTERRFF 79 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGY+L++ MTD+ +H ++DT KV GF+G P+P+ E+E ++ Q++ V +P Sbjct: 80 PGYILVEMEMTDETWHLVRDTGKVTGFVGGKSNKPTPIPHREMEKLLQQMQDGVAKPRPK 139 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 ISYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195 >gi|167648397|ref|YP_001686060.1| transcription antitermination protein NusG [Caulobacter sp. K31] gi|167350827|gb|ABZ73562.1| NusG antitermination factor [Caulobacter sp. K31] Length = 185 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 98/174 (56%), Positives = 129/174 (74%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK ESI + GL+ +EI +P+E VV +R+GRKVN+ER+FFP Sbjct: 11 HKWYIVHAYSNFEKKVAESIREQAKSHGLEDSFSEILVPTEDVVEIRRGRKVNAERKFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K ++D+ YH IK+TPKV GFLG+ P PV++ E++ I+ +E V+RP + V Sbjct: 71 GYVLVKMHLSDEAYHLIKNTPKVTGFLGSASKPQPVSEKEVQRIVGAIEEGVERPKTVVL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V V+DGPFASFNG V+ VDEE++R+ V V IFGR TPVEL Y+QVEKI Sbjct: 131 FEIGENVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYSQVEKI 184 >gi|152977734|ref|YP_001343363.1| transcription antitermination protein NusG [Actinobacillus succinogenes 130Z] gi|150839457|gb|ABR73428.1| NusG antitermination factor [Actinobacillus succinogenes 130Z] Length = 185 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP Sbjct: 9 KRWYVLQAFSGFEGRVAATLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D + ++ P+V+GF+G + P P++ E + I+N+VE +P Sbjct: 69 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPLPISQREADAILNRVEQNADKPRPKN 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK Sbjct: 129 VFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 182 >gi|83591289|ref|YP_431298.1| transcription antitermination protein nusG [Moorella thermoacetica ATCC 39073] gi|83574203|gb|ABC20755.1| transcription antitermination protein nusG [Moorella thermoacetica ATCC 39073] Length = 175 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 106/176 (60%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ + + + +P E V ++ G++ +R+ Sbjct: 1 MEKAWYVIHTYSGYENKVKANLEKRVESMNMGDKIFRVVVPMEDEVQIKDGKRKIVKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV+++ V+TD ++ +++TP V GF+GTG P P+ + E++ I+ Q+ V+ P Sbjct: 61 YPGYVMVEMVLTDASWYVVRNTPGVTGFVGTGNKPIPLREEEVDQILQQMG--VEEPRPR 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VGE V V+ GPF +F G ++ + +K ++ V V +FGR TP+EL +NQ+EKI Sbjct: 119 IDVTVGENVRVTSGPFENFIGSIEEIMPDKGKLRVLVSMFGRETPIELDFNQIEKI 174 >gi|328953170|ref|YP_004370504.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328453494|gb|AEB09323.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 176 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS EKK +++ R G+ L+T++ +P+E+V + KG++ S R+F Sbjct: 1 MAQKWYVVHTYSGFEKKVKDALEERARSRGMQDLITQVLVPTEQVEEMIKGQRRISHRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYVL++ + D +H ++DTPKV GF+G P+ + D+E E ++NQ++ +P Sbjct: 61 YPGYVLVRMELNDDTWHLVQDTPKVTGFIGGRMEPAVIPDAEAEKVINQIKEGALKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+G++V V DGPF +FNG+V V EK RV V + +FGR TPVEL ++QVEK Sbjct: 121 IKFELGDKVRVIDGPFTNFNGVVDEVKGEKGRVRVMISVFGRPTPVELEFSQVEK 175 >gi|163796064|ref|ZP_02190026.1| Transcription antiterminator [alpha proteobacterium BAL199] gi|159178523|gb|EDP63063.1| Transcription antiterminator [alpha proteobacterium BAL199] Length = 176 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 86/176 (48%), Positives = 125/176 (71%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V VYS EKK ++ + + G++ L+ E+ +P+E ++ VR+G KV++ER+F Sbjct: 1 MAIRWYVVHVYSGFEKKVATAVREQAAAQGMEDLIEEVLVPTEEIIEVRRGAKVSAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+K +TD+ +H + PKV GFLG P+P+T+ E I+ QV V RP S Sbjct: 61 FPGYILVKMQLTDETWHLVTSQPKVTGFLGGKGKPTPITEGEATRIIKQVSEGVDRPKPS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE+V V+DGPFA+FNG V++VDEEK+R+ V V IFGR TPV+L + QVEK+ Sbjct: 121 ITFEIGEQVRVADGPFATFNGYVEDVDEEKARLKVAVSIFGRSTPVDLEFTQVEKV 176 >gi|330953210|gb|EGH53470.1| transcription antitermination protein NusG [Pseudomonas syringae Cit 7] Length = 177 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDT +V+GF+G + P+P+TD E E I +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTSRVMGFIGGTADKPAPITDKEAEAIRRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176 >gi|304310004|ref|YP_003809602.1| Transcription antitermination protein [gamma proteobacterium HdN1] gi|301795737|emb|CBL43936.1| Transcription antitermination protein [gamma proteobacterium HdN1] Length = 177 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK+ S+ R+ R GL+ E+ +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKQVKRSLEERVKRFGLEDKFGEVLVPTEEVVEIRGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M ++ ++ +K+ PKV+GF+G + P+P++D E I+ +VE V++P Sbjct: 61 FPGYVLVQMEMDEESWYLVKECPKVMGFIGGTLDKPAPISDVEANAILRRVEDGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGVVEEVNYEKSRLQVAVLIFGRSTPVELEFGQVEK 176 >gi|329897158|ref|ZP_08271899.1| Transcription antitermination protein NusG [gamma proteobacterium IMCC3088] gi|328921375|gb|EGG28768.1| Transcription antitermination protein NusG [gamma proteobacterium IMCC3088] Length = 177 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EKK ++ R+ + ++ +P+E VV ++ G+K SER+F Sbjct: 1 MSMRWYVVHAYSGYEKKVATALKERIDLHAMGDRFGDVLVPTEEVVEMKNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+TD+E + I+ +VE ++P Sbjct: 61 FPGYVLVQMELDDDTWHLVKETPRVMGFIGGKADAPAPITDAEAQAILRRVEDGTEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF F G+V+ V+ EKSR++V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEMVRVVDGPFNDFYGVVEEVNYEKSRLNVAVLIFGRSTPVELEFSQVEK 176 >gi|323703915|ref|ZP_08115547.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574] gi|323531131|gb|EGB21038.1| NusG antitermination factor [Desulfotomaculum nigrificans DSM 574] Length = 175 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 112/176 (63%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++ Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ + E + I+ Q+ ++ P + Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGTKPIPLNEDEAKAIIKQMG--MEEPRTR 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+ Sbjct: 119 VDYSLGENVRVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKM 174 >gi|330891943|gb|EGH24604.1| transcription antitermination protein NusG [Pseudomonas syringae pv. mori str. 301020] Length = 177 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V +DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEVVRATDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 176 >gi|258591304|emb|CBE67603.1| component in transcription antitermination [NC10 bacterium 'Dutch sediment'] Length = 176 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 118/176 (67%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++ YS E K ESI R + GL ++++ IP+E VV ++KG++ S R+F Sbjct: 1 MSQSWYVIHTYSGFENKVKESIEQRAAALGLSDKISKVMIPTEDVVELKKGKRTVSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVLIKA M++++++ +K+TPKV GF+G P+PV + +++ I+ QVE +RP Sbjct: 61 FPGYVLIKAEMSEQLWYLVKNTPKVTGFVGPATQPTPVPEEQVQTILQQVEEGAERPKHR 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F GE V V DGPFA+F G+V V EK R+ V V IFGR TPV+L + QVEK+ Sbjct: 121 VMFLRGESVRVIDGPFANFTGLVDEVKPEKGRLKVMVSIFGRPTPVDLEFLQVEKV 176 >gi|225175687|ref|ZP_03729681.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225169016|gb|EEG77816.1| NusG antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 174 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+V Y+ E K ++ R+ + + + +P E+ + ++ G+K + ++ Sbjct: 1 MSKNWYVVHTYAGYENKVKTNLEKRVESMEMQDKIFRVLVPMEKELEIKNGKKKETLKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ ++TD ++ +++TP V GF+G G P P++D+EI I+ Q+ +P Sbjct: 61 FPGYVLVEMIVTDDSWYVVRNTPGVTGFVGPGSKPIPLSDAEISQILKQMGMGDSKP--K 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F VGE V V+DGPFA+F G V+ V E++ ++ V V +FGR TPVEL + QVEK+ Sbjct: 119 IDFSVGENVRVTDGPFANFVGSVEEVLEDRRKIKVLVSMFGRETPVELEFYQVEKL 174 >gi|329890177|ref|ZP_08268520.1| transcription termination/antitermination factor NusG [Brevundimonas diminuta ATCC 11568] gi|328845478|gb|EGF95042.1| transcription termination/antitermination factor NusG [Brevundimonas diminuta ATCC 11568] Length = 191 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 130/176 (73%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK E + + + GL+ +EI +P+E V+ +R+G+KVN+ER+FFP Sbjct: 14 HKWYIVHAYSNFEKKVAEQLRDQAKQQGLEDAFSEILVPTEDVIEIRRGKKVNAERKFFP 73 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GYVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP + Sbjct: 74 GYVLVKMEMTDEAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++GE V V DGPFASF+G V++VDEE +R+ V V IFGR TPVEL YNQVEK+ Sbjct: 134 IRFDIGENVKVIDGPFASFDGQVESVDEENARLRVAVSIFGRPTPVELEYNQVEKV 189 >gi|26987183|ref|NP_742608.1| transcription antitermination protein NusG [Pseudomonas putida KT2440] gi|148545727|ref|YP_001265829.1| transcription antitermination protein NusG [Pseudomonas putida F1] gi|167031488|ref|YP_001666719.1| transcription antitermination protein NusG [Pseudomonas putida GB-1] gi|325271153|ref|ZP_08137709.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51] gi|24981819|gb|AAN66072.1|AE016236_6 transcription antitermination protein NusG [Pseudomonas putida KT2440] gi|148509785|gb|ABQ76645.1| transcription antitermination protein nusG [Pseudomonas putida F1] gi|166857976|gb|ABY96383.1| NusG antitermination factor [Pseudomonas putida GB-1] gi|324103705|gb|EGC00996.1| transcription antitermination protein NusG [Pseudomonas sp. TJI-51] Length = 177 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177 >gi|104779743|ref|YP_606241.1| transcription antitermination protein NusG [Pseudomonas entomophila L48] gi|95108730|emb|CAK13424.1| transcription antitermination protein NusG [Pseudomonas entomophila L48] Length = 177 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177 >gi|83312245|ref|YP_422509.1| transcription antitermination protein NusG [Magnetospirillum magneticum AMB-1] gi|82947086|dbj|BAE51950.1| Transcription antiterminator [Magnetospirillum magneticum AMB-1] Length = 177 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 98/175 (56%), Positives = 127/175 (72%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGAKVNAERKFF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+ Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V VSDGPF SFNG+V+ VDEEK+R+ V V IFGR TPVEL Y+QVEKI Sbjct: 123 IFEVGEQVRVSDGPFTSFNGLVEEVDEEKARLKVAVSIFGRSTPVELEYSQVEKI 177 >gi|294085946|ref|YP_003552706.1| transcription antiterminator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665521|gb|ADE40622.1| Transcription antiterminator [Candidatus Puniceispirillum marinum IMCC1322] Length = 176 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 124/176 (70%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V V+S EKK ++I + GL+ + E+ +P+E VV +R+G +V SER+F Sbjct: 1 MAKRWYVVHVFSGSEKKVAQAITEQAVTHGLEDQIDEVMVPTEEVVEMRRGVRVQSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+K ++D+ + + P+V GFLG P P+T+SE E ++ Q+ V+RP S+ Sbjct: 61 FPGYILVKLELSDEAWQLVTSQPRVTGFLGGKGKPIPITNSEAERLIKQMSEGVERPRST 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++GE+V VSDGPFASFNG V+ D++K+R+ V V IFGR TPVEL Y+QVEK+ Sbjct: 121 ITFDIGEQVRVSDGPFASFNGYVEEADDDKARLKVTVSIFGRSTPVELEYSQVEKV 176 >gi|90417775|ref|ZP_01225687.1| transcription antitermination protein NusG [Aurantimonas manganoxydans SI85-9A1] gi|90337447|gb|EAS51098.1| transcription antitermination protein NusG [Aurantimonas manganoxydans SI85-9A1] Length = 176 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 101/175 (57%), Positives = 133/175 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK ESI + + GL +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAESIEEQARQKGLSDKFEKILVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TD+V+ IK+TPKV GFLG P+P+T+ E E I+ QV+ V+RP + Sbjct: 61 FPGYVLVKAELTDQVFSMIKNTPKVTGFLGAENRPTPITEKEAEQILAQVQDGVERPKPT 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F++GE+V VSDGPFASFNGIV+ VD+E++R+ VEV IFGR TPV+L + QVEK Sbjct: 121 VSFDIGEQVRVSDGPFASFNGIVQEVDQERARLKVEVSIFGRATPVDLEFGQVEK 175 >gi|88812769|ref|ZP_01128015.1| transcription antitermination protein NusG [Nitrococcus mobilis Nb-231] gi|88790007|gb|EAR21128.1| transcription antitermination protein NusG [Nitrococcus mobilis Nb-231] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E + S+ R+ R G++ EI +P+E VV +R+G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFENQVKRSLEERIKREGVESKFGEILVPTEEVVEMREGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MT++ +H ++D P+V+ F+G + P+P++D+E E I+N+V +RP Sbjct: 61 FPGYVLVQMEMTEETWHLVRDVPRVMAFIGGTSDRPAPISDAEAEQILNRVREGAERPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEVVRVVSGPFTDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 176 >gi|326793546|ref|YP_004311366.1| NusG antitermination factor [Marinomonas mediterranea MMB-1] gi|326544310|gb|ADZ89530.1| NusG antitermination factor [Marinomonas mediterranea MMB-1] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ YS EK + ++ R+ + L EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVQAYSGYEKHVMRALTERVQLMSMQDLFGEILVPTEEVVEIRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K T +V+GF+G + PSP+T E + I+ +V V +P Sbjct: 61 YPGYVLVQMDMNDDSWHLVKGTSRVLGFIGGTADKPSPITQREADAILQRVNEGVDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK Sbjct: 121 KTLFEAGEVVRVNDGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176 >gi|302344368|ref|YP_003808897.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075] gi|301640981|gb|ADK86303.1| NusG antitermination factor [Desulfarculus baarsii DSM 2075] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYIV YS E K ES+ R+ GLD +I +P E+VV + KG++ S R+F Sbjct: 1 MAKKWYIVHTYSGFENKVRESLTERVRSHGLDDYFGQILVPMEKVVEMVKGQRRESSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGY++++ M D+ +H +KDT KV GF+G E P+P++D E + I++Q++ + P Sbjct: 61 YPGYIVVEMEMNDETWHLVKDTAKVTGFVGGSETDPTPISDEEAQRILSQMQEGTKAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V DGPF +FNG V+ V+ EK ++ V + IFGR TPVEL + QV K+ Sbjct: 121 KFNFEEGDEVRVIDGPFNNFNGSVEEVNPEKGKLRVLISIFGRATPVELEFVQVTKV 177 >gi|170723918|ref|YP_001751606.1| transcription antitermination protein NusG [Pseudomonas putida W619] gi|169761921|gb|ACA75237.1| NusG antitermination factor [Pseudomonas putida W619] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPFA FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVIDGPFADFNGNVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 177 >gi|120553640|ref|YP_957991.1| transcription antitermination protein NusG [Marinobacter aquaeolei VT8] gi|120323489|gb|ABM17804.1| transcription antitermination protein nusG [Marinobacter aquaeolei VT8] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + ++ R++ G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALEGMEDKFGEILVPTEEVVEMRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K+TP+V+GF+G + P+P+T+ E E I+ +VE+ +P Sbjct: 61 YPGYVLVQMEMDDASWHLVKNTPRVLGFIGGTKDKPAPITEREAEAILRRVESGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V +GPFA FNG+V+ VD EKSRV V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEIVRVVEGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVELEFGQVEK 176 >gi|183597452|ref|ZP_02958945.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827] gi|188023201|gb|EDU61241.1| hypothetical protein PROSTU_00725 [Providencia stuartii ATCC 25827] Length = 181 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 119/175 (68%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL ++QVEK+ Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181 >gi|149925890|ref|ZP_01914153.1| transcription antitermination protein NusG [Limnobacter sp. MED105] gi|149825178|gb|EDM84389.1| transcription antitermination protein NusG [Limnobacter sp. MED105] Length = 177 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK ++ R+ RS L +I +PSE VV ++ G+K SERRF Sbjct: 1 MSKRWYVVHAYSGLEKSVQRALQERIDRSEFSDLFGQILVPSEEVVEIKGGQKSISERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD +H +K+TPKV GF+G G P+P++ E++ IM Q++ ++P Sbjct: 61 FPGYVLVEMEMTDDSWHLVKNTPKVTGFVGGTGNRPTPISQKEVDKIMQQMQEGAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EVGE V V +GPFA FNG V+ ++ EKS++ V V IFGR TPVEL ++QVEK+ Sbjct: 121 KVLYEVGEMVRVKEGPFADFNGNVEEINYEKSKLRVSVTIFGRATPVELDFHQVEKV 177 >gi|332091145|gb|EGI96235.1| transcription termination/antitermination factor NusG [Shigella dysenteriae 155-74] Length = 181 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|15804572|ref|NP_290613.1| transcription antitermination protein NusG [Escherichia coli O157:H7 EDL933] gi|15834159|ref|NP_312932.1| transcription antitermination protein NusG [Escherichia coli O157:H7 str. Sakai] gi|16131812|ref|NP_418409.1| transcription termination factor [Escherichia coli str. K-12 substr. MG1655] gi|24115267|ref|NP_709777.1| transcription antitermination protein NusG [Shigella flexneri 2a str. 301] gi|30064735|ref|NP_838906.1| transcription antitermination protein NusG [Shigella flexneri 2a str. 2457T] gi|74314476|ref|YP_312895.1| transcription antitermination protein NusG [Shigella sonnei Ss046] gi|82546324|ref|YP_410271.1| transcription antitermination protein NusG [Shigella boydii Sb227] gi|82778843|ref|YP_405192.1| transcription antitermination protein NusG [Shigella dysenteriae Sd197] gi|89110057|ref|AP_003837.1| transcription termination factor [Escherichia coli str. K-12 substr. W3110] gi|110807832|ref|YP_691352.1| transcription antitermination protein NusG [Shigella flexneri 5 str. 8401] gi|157154871|ref|YP_001465473.1| transcription antitermination protein NusG [Escherichia coli E24377A] gi|157163450|ref|YP_001460768.1| transcription antitermination protein NusG [Escherichia coli HS] gi|168759202|ref|ZP_02784209.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4401] gi|168771452|ref|ZP_02796459.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4486] gi|168780365|ref|ZP_02805372.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4076] gi|168790340|ref|ZP_02815347.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC869] gi|170022015|ref|YP_001726969.1| transcription antitermination protein NusG [Escherichia coli ATCC 8739] gi|170083442|ref|YP_001732762.1| transcription termination factor [Escherichia coli str. K-12 substr. DH10B] gi|170682823|ref|YP_001746366.1| transcription antitermination protein NusG [Escherichia coli SMS-3-5] gi|187730221|ref|YP_001882667.1| transcription antitermination protein NusG [Shigella boydii CDC 3083-94] gi|188492529|ref|ZP_02999799.1| transcription termination/antitermination factor NusG [Escherichia coli 53638] gi|195939607|ref|ZP_03084989.1| transcription antitermination protein NusG [Escherichia coli O157:H7 str. EC4024] gi|208812131|ref|ZP_03253460.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4045] gi|208819832|ref|ZP_03260152.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4042] gi|209399471|ref|YP_002273498.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4115] gi|209921460|ref|YP_002295544.1| transcription antitermination protein NusG [Escherichia coli SE11] gi|217325434|ref|ZP_03441518.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. TW14588] gi|218551034|ref|YP_002384825.1| transcription antitermination protein NusG [Escherichia fergusonii ATCC 35469] gi|218556536|ref|YP_002389450.1| transcription antitermination protein NusG [Escherichia coli IAI1] gi|218697689|ref|YP_002405356.1| transcription antitermination protein NusG [Escherichia coli 55989] gi|218702612|ref|YP_002410241.1| transcription antitermination protein NusG [Escherichia coli IAI39] gi|218707600|ref|YP_002415119.1| transcription antitermination protein NusG [Escherichia coli UMN026] gi|238903038|ref|YP_002928834.1| transcription termination factor [Escherichia coli BW2952] gi|253775389|ref|YP_003038220.1| transcription antitermination protein NusG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039237|ref|ZP_04873286.1| transcription termination/antitermination factor NusG [Escherichia sp. 1_1_43] gi|254163923|ref|YP_003047031.1| transcription antitermination protein NusG [Escherichia coli B str. REL606] gi|254795980|ref|YP_003080817.1| transcription antitermination protein NusG [Escherichia coli O157:H7 str. TW14359] gi|256021698|ref|ZP_05435563.1| transcription antitermination protein NusG [Shigella sp. D9] gi|256026297|ref|ZP_05440162.1| transcription antitermination protein NusG [Escherichia sp. 4_1_40B] gi|260846782|ref|YP_003224560.1| transcription termination factor NusG [Escherichia coli O103:H2 str. 12009] gi|260858091|ref|YP_003231982.1| transcription termination factor NusG [Escherichia coli O26:H11 str. 11368] gi|260870693|ref|YP_003237095.1| transcription termination factor NusG [Escherichia coli O111:H- str. 11128] gi|261227307|ref|ZP_05941588.1| transcription termination factor [Escherichia coli O157:H7 str. FRIK2000] gi|261257054|ref|ZP_05949587.1| transcription termination factor NusG [Escherichia coli O157:H7 str. FRIK966] gi|291285396|ref|YP_003502214.1| Transcription antitermination protein nusG [Escherichia coli O55:H7 str. CB9615] gi|293407598|ref|ZP_06651516.1| nusG [Escherichia coli FVEC1412] gi|293413417|ref|ZP_06656077.1| transcription termination/antitermination factor NusG [Escherichia coli B354] gi|293417485|ref|ZP_06660108.1| transcription termination/antitermination factor NusG [Escherichia coli B185] gi|293474289|ref|ZP_06664698.1| transcription termination/antitermination factor NusG [Escherichia coli B088] gi|298383346|ref|ZP_06992938.1| transcription antitermination protein nusG [Escherichia coli FVEC1302] gi|300819792|ref|ZP_07099979.1| transcription termination/antitermination factor NusG [Escherichia coli MS 107-1] gi|300824639|ref|ZP_07104747.1| transcription termination/antitermination factor NusG [Escherichia coli MS 119-7] gi|300897605|ref|ZP_07116013.1| transcription termination/antitermination factor NusG [Escherichia coli MS 198-1] gi|300907533|ref|ZP_07125173.1| transcription termination/antitermination factor NusG [Escherichia coli MS 84-1] gi|300919397|ref|ZP_07135903.1| transcription termination/antitermination factor NusG [Escherichia coli MS 115-1] gi|300925847|ref|ZP_07141692.1| transcription termination/antitermination factor NusG [Escherichia coli MS 182-1] gi|300928799|ref|ZP_07144308.1| transcription termination/antitermination factor NusG [Escherichia coli MS 187-1] gi|300938794|ref|ZP_07153506.1| transcription termination/antitermination factor NusG [Escherichia coli MS 21-1] gi|300947415|ref|ZP_07161606.1| transcription termination/antitermination factor NusG [Escherichia coli MS 116-1] gi|300954789|ref|ZP_07167218.1| transcription termination/antitermination factor NusG [Escherichia coli MS 175-1] gi|301019394|ref|ZP_07183571.1| transcription termination/antitermination factor NusG [Escherichia coli MS 69-1] gi|301023348|ref|ZP_07187140.1| transcription termination/antitermination factor NusG [Escherichia coli MS 196-1] gi|301302207|ref|ZP_07208339.1| transcription termination/antitermination factor NusG [Escherichia coli MS 124-1] gi|301326087|ref|ZP_07219485.1| transcription termination/antitermination factor NusG [Escherichia coli MS 78-1] gi|301645764|ref|ZP_07245684.1| transcription termination/antitermination factor NusG [Escherichia coli MS 146-1] gi|307140673|ref|ZP_07500029.1| transcription antitermination protein NusG [Escherichia coli H736] gi|307315045|ref|ZP_07594631.1| NusG antitermination factor [Escherichia coli W] gi|309783933|ref|ZP_07678578.1| transcription termination/antitermination factor NusG [Shigella dysenteriae 1617] gi|309797685|ref|ZP_07692071.1| transcription termination/antitermination factor NusG [Escherichia coli MS 145-7] gi|312974232|ref|ZP_07788402.1| transcription termination/antitermination factor NusG [Escherichia coli 1827-70] gi|331644716|ref|ZP_08345834.1| transcription termination/antitermination factor NusG [Escherichia coli H736] gi|331655679|ref|ZP_08356669.1| transcription termination/antitermination factor NusG [Escherichia coli M718] gi|331665636|ref|ZP_08366532.1| transcription termination/antitermination factor NusG [Escherichia coli TA143] gi|331670834|ref|ZP_08371669.1| transcription termination/antitermination factor NusG [Escherichia coli TA271] gi|331680102|ref|ZP_08380763.1| transcription termination/antitermination factor NusG [Escherichia coli H591] gi|331685723|ref|ZP_08386305.1| transcription termination/antitermination factor NusG [Escherichia coli H299] gi|84028777|sp|P0AFG1|NUSG_ECO57 RecName: Full=Transcription antitermination protein nusG gi|84028778|sp|P0AFG0|NUSG_ECOLI RecName: Full=Transcription antitermination protein nusG gi|84028779|sp|P0AFG2|NUSG_SHIFL RecName: Full=Transcription antitermination protein nusG gi|209447284|pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain gi|12518904|gb|AAG59178.1|AE005629_7 component in transcription antitermination [Escherichia coli O157:H7 str. EDL933] gi|147801|gb|AAA24622.1| NusG protein [Escherichia coli] gi|396321|gb|AAC43080.1| ORF_o181 [Escherichia coli str. K-12 substr. MG1655] gi|1790414|gb|AAC76956.1| transcription termination factor [Escherichia coli str. K-12 substr. MG1655] gi|13364381|dbj|BAB38328.1| component in transcription antitermination [Escherichia coli O157:H7 str. Sakai] gi|24054560|gb|AAN45484.1| component in transcription antitermination [Shigella flexneri 2a str. 301] gi|30042995|gb|AAP18717.1| component in transcription antitermination [Shigella flexneri 2a str. 2457T] gi|73857953|gb|AAZ90660.1| component in transcription antitermination [Shigella sonnei Ss046] gi|81242991|gb|ABB63701.1| component in transcription antitermination [Shigella dysenteriae Sd197] gi|81247735|gb|ABB68443.1| NusG [Shigella boydii Sb227] gi|85676088|dbj|BAE77338.1| transcription termination factor [Escherichia coli str. K12 substr. W3110] gi|110617380|gb|ABF06047.1| component in transcription antitermination [Shigella flexneri 5 str. 8401] gi|157069130|gb|ABV08385.1| transcription termination/antitermination factor NusG [Escherichia coli HS] gi|157076901|gb|ABV16609.1| transcription termination/antitermination factor NusG [Escherichia coli E24377A] gi|169756943|gb|ACA79642.1| NusG antitermination factor [Escherichia coli ATCC 8739] gi|169891277|gb|ACB04984.1| transcription termination factor [Escherichia coli str. K-12 substr. DH10B] gi|170520541|gb|ACB18719.1| transcription termination/antitermination factor NusG [Escherichia coli SMS-3-5] gi|187427213|gb|ACD06487.1| transcription termination/antitermination factor NusG [Shigella boydii CDC 3083-94] gi|188487728|gb|EDU62831.1| transcription termination/antitermination factor NusG [Escherichia coli 53638] gi|189001643|gb|EDU70629.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4076] gi|189354220|gb|EDU72639.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4401] gi|189359775|gb|EDU78194.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4486] gi|189370168|gb|EDU88584.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC869] gi|208733408|gb|EDZ82095.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4045] gi|208739955|gb|EDZ87637.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4042] gi|209160871|gb|ACI38304.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4115] gi|209751858|gb|ACI74236.1| 50S ribosomal subunit protein L11 [Escherichia coli] gi|209751860|gb|ACI74237.1| 50S ribosomal subunit protein L11 [Escherichia coli] gi|209751862|gb|ACI74238.1| 50S ribosomal subunit protein L11 [Escherichia coli] gi|209751864|gb|ACI74239.1| 50S ribosomal subunit protein L11 [Escherichia coli] gi|209751866|gb|ACI74240.1| 50S ribosomal subunit protein L11 [Escherichia coli] gi|209914719|dbj|BAG79793.1| transcription antitermination protein [Escherichia coli SE11] gi|217321655|gb|EEC30079.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. TW14588] gi|218354421|emb|CAV01219.1| transcription termination factor [Escherichia coli 55989] gi|218358575|emb|CAQ91223.1| transcription termination factor [Escherichia fergusonii ATCC 35469] gi|218363305|emb|CAR00955.1| transcription termination factor [Escherichia coli IAI1] gi|218372598|emb|CAR20473.1| transcription termination factor [Escherichia coli IAI39] gi|218434697|emb|CAR15629.1| transcription termination factor [Escherichia coli UMN026] gi|226838472|gb|EEH70502.1| transcription termination/antitermination factor NusG [Escherichia sp. 1_1_43] gi|238863680|gb|ACR65678.1| transcription termination factor [Escherichia coli BW2952] gi|242379512|emb|CAQ34328.1| transcription termination factor NusG [Escherichia coli BL21(DE3)] gi|253326433|gb|ACT31035.1| NusG antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975824|gb|ACT41495.1| transcription antitermination protein NusG [Escherichia coli B str. REL606] gi|253979980|gb|ACT45650.1| transcription antitermination protein NusG [Escherichia coli BL21(DE3)] gi|254595380|gb|ACT74741.1| transcription termination factor [Escherichia coli O157:H7 str. TW14359] gi|257756740|dbj|BAI28242.1| transcription termination factor NusG [Escherichia coli O26:H11 str. 11368] gi|257761929|dbj|BAI33426.1| transcription termination factor NusG [Escherichia coli O103:H2 str. 12009] gi|257767049|dbj|BAI38544.1| transcription termination factor NusG [Escherichia coli O111:H- str. 11128] gi|260451191|gb|ACX41613.1| NusG antitermination factor [Escherichia coli DH1] gi|281603368|gb|ADA76352.1| Transcription antitermination protein nusG [Shigella flexneri 2002017] gi|284924074|emb|CBG37173.1| transcription antitermination protein [Escherichia coli 042] gi|290765269|gb|ADD59230.1| Transcription antitermination protein nusG [Escherichia coli O55:H7 str. CB9615] gi|291321319|gb|EFE60760.1| transcription termination/antitermination factor NusG [Escherichia coli B088] gi|291425366|gb|EFE98406.1| nusG [Escherichia coli FVEC1412] gi|291430812|gb|EFF03809.1| transcription termination/antitermination factor NusG [Escherichia coli B185] gi|291468012|gb|EFF10511.1| transcription termination/antitermination factor NusG [Escherichia coli B354] gi|298276225|gb|EFI17746.1| transcription antitermination protein nusG [Escherichia coli FVEC1302] gi|299880908|gb|EFI89119.1| transcription termination/antitermination factor NusG [Escherichia coli MS 196-1] gi|300318258|gb|EFJ68042.1| transcription termination/antitermination factor NusG [Escherichia coli MS 175-1] gi|300358652|gb|EFJ74522.1| transcription termination/antitermination factor NusG [Escherichia coli MS 198-1] gi|300399278|gb|EFJ82816.1| transcription termination/antitermination factor NusG [Escherichia coli MS 69-1] gi|300400740|gb|EFJ84278.1| transcription termination/antitermination factor NusG [Escherichia coli MS 84-1] gi|300413532|gb|EFJ96842.1| transcription termination/antitermination factor NusG [Escherichia coli MS 115-1] gi|300418072|gb|EFK01383.1| transcription termination/antitermination factor NusG [Escherichia coli MS 182-1] gi|300452984|gb|EFK16604.1| transcription termination/antitermination factor NusG [Escherichia coli MS 116-1] gi|300456278|gb|EFK19771.1| transcription termination/antitermination factor NusG [Escherichia coli MS 21-1] gi|300463210|gb|EFK26703.1| transcription termination/antitermination factor NusG [Escherichia coli MS 187-1] gi|300522888|gb|EFK43957.1| transcription termination/antitermination factor NusG [Escherichia coli MS 119-7] gi|300527613|gb|EFK48675.1| transcription termination/antitermination factor NusG [Escherichia coli MS 107-1] gi|300842370|gb|EFK70130.1| transcription termination/antitermination factor NusG [Escherichia coli MS 124-1] gi|300847180|gb|EFK74940.1| transcription termination/antitermination factor NusG [Escherichia coli MS 78-1] gi|301075975|gb|EFK90781.1| transcription termination/antitermination factor NusG [Escherichia coli MS 146-1] gi|306905550|gb|EFN36083.1| NusG antitermination factor [Escherichia coli W] gi|308118697|gb|EFO55959.1| transcription termination/antitermination factor NusG [Escherichia coli MS 145-7] gi|308928304|gb|EFP73766.1| transcription termination/antitermination factor NusG [Shigella dysenteriae 1617] gi|309704397|emb|CBJ03746.1| transcription antitermination protein [Escherichia coli ETEC H10407] gi|310331399|gb|EFP98664.1| transcription termination/antitermination factor NusG [Escherichia coli 1827-70] gi|313648632|gb|EFS13072.1| transcription termination/antitermination factor NusG [Shigella flexneri 2a str. 2457T] gi|315063307|gb|ADT77634.1| transcription termination factor [Escherichia coli W] gi|315138538|dbj|BAJ45697.1| transcription antitermination protein nusG [Escherichia coli DH1] gi|315253054|gb|EFU33022.1| transcription termination/antitermination factor NusG [Escherichia coli MS 85-1] gi|315617345|gb|EFU97951.1| transcription termination/antitermination factor NusG [Escherichia coli 3431] gi|320172757|gb|EFW47991.1| Transcription antitermination protein NusG [Shigella dysenteriae CDC 74-1112] gi|320179557|gb|EFW54508.1| Transcription antitermination protein NusG [Shigella boydii ATCC 9905] gi|320185980|gb|EFW60728.1| Transcription antitermination protein NusG [Shigella flexneri CDC 796-83] gi|320190922|gb|EFW65572.1| Transcription antitermination protein NusG [Escherichia coli O157:H7 str. EC1212] gi|320200179|gb|EFW74768.1| Transcription antitermination protein NusG [Escherichia coli EC4100B] gi|320639072|gb|EFX08712.1| transcription antitermination protein NusG [Escherichia coli O157:H7 str. G5101] gi|320644466|gb|EFX13529.1| transcription antitermination protein NusG [Escherichia coli O157:H- str. 493-89] gi|320649785|gb|EFX18306.1| transcription antitermination protein NusG [Escherichia coli O157:H- str. H 2687] gi|320655118|gb|EFX23074.1| transcription antitermination protein NusG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660762|gb|EFX28216.1| transcription antitermination protein NusG [Escherichia coli O55:H7 str. USDA 5905] gi|320665880|gb|EFX32911.1| transcription antitermination protein NusG [Escherichia coli O157:H7 str. LSU-61] gi|323155526|gb|EFZ41704.1| transcription termination/antitermination factor NusG [Escherichia coli EPECa14] gi|323161296|gb|EFZ47206.1| transcription termination/antitermination factor NusG [Escherichia coli E128010] gi|323167452|gb|EFZ53160.1| transcription termination/antitermination factor NusG [Shigella sonnei 53G] gi|323174509|gb|EFZ60134.1| transcription termination/antitermination factor NusG [Escherichia coli LT-68] gi|323177535|gb|EFZ63120.1| transcription termination/antitermination factor NusG [Escherichia coli 1180] gi|323182079|gb|EFZ67489.1| transcription termination/antitermination factor NusG [Escherichia coli 1357] gi|323380629|gb|ADX52897.1| NusG antitermination factor [Escherichia coli KO11] gi|323933976|gb|EGB30450.1| transcription termination/antitermination protein NusG [Escherichia coli E1520] gi|323938901|gb|EGB35121.1| transcription termination/antitermination protein NusG [Escherichia coli E482] gi|323943601|gb|EGB39710.1| transcription termination/antitermination protein NusG [Escherichia coli H120] gi|323958908|gb|EGB54583.1| transcription termination/antitermination protein NusG [Escherichia coli H489] gi|323963800|gb|EGB59299.1| transcription termination/antitermination protein NusG [Escherichia coli M863] gi|323969055|gb|EGB64363.1| transcription termination/antitermination protein NusG [Escherichia coli TA007] gi|323974182|gb|EGB69314.1| transcription termination/antitermination protein NusG [Escherichia coli TW10509] gi|324017335|gb|EGB86554.1| transcription termination/antitermination factor NusG [Escherichia coli MS 117-3] gi|324110894|gb|EGC04886.1| transcription termination/antitermination protein NusG [Escherichia fergusonii B253] gi|324115413|gb|EGC09358.1| transcription termination/antitermination protein NusG [Escherichia coli E1167] gi|325499286|gb|EGC97145.1| transcription antitermination protein NusG [Escherichia fergusonii ECD227] gi|326347168|gb|EGD70898.1| Transcription antitermination protein NusG [Escherichia coli O157:H7 str. 1125] gi|326347581|gb|EGD71303.1| Transcription antitermination protein NusG [Escherichia coli O157:H7 str. 1044] gi|327250452|gb|EGE62162.1| transcription termination/antitermination factor NusG [Escherichia coli STEC_7v] gi|331036016|gb|EGI08253.1| transcription termination/antitermination factor NusG [Escherichia coli H736] gi|331046604|gb|EGI18691.1| transcription termination/antitermination factor NusG [Escherichia coli M718] gi|331057154|gb|EGI29146.1| transcription termination/antitermination factor NusG [Escherichia coli TA143] gi|331061922|gb|EGI33846.1| transcription termination/antitermination factor NusG [Escherichia coli TA271] gi|331072257|gb|EGI43591.1| transcription termination/antitermination factor NusG [Escherichia coli H591] gi|331077033|gb|EGI48249.1| transcription termination/antitermination factor NusG [Escherichia coli H299] gi|332083870|gb|EGI89083.1| transcription termination/antitermination factor NusG [Shigella boydii 5216-82] gi|332092312|gb|EGI97387.1| transcription termination/antitermination factor NusG [Shigella boydii 3594-74] gi|332105293|gb|EGJ08639.1| transcription antitermination protein nusG [Shigella sp. D9] Length = 181 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|77918303|ref|YP_356118.1| transcription termination/antitermination factor NusG [Pelobacter carbinolicus DSM 2380] gi|77544386|gb|ABA87948.1| transcription antitermination protein nusG [Pelobacter carbinolicus DSM 2380] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS E K ++ R+ + G + L E+ IPSE VV ++ G + S R+F Sbjct: 1 MSKKWYGVHTYSGFENKVKMTLEERIRQLGFEELFGEVLIPSETVVEMKNGERKTSTRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L++ + ++ +H +K+TPKV GF+G G P P++D E+ I ++E V+RP Sbjct: 61 FPGYILVQMELNNETWHVVKNTPKVTGFVGGGSAPPPISDEEVAKITARMEEDVERPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F G+V++V +K ++ V V IFGRVTPVEL + QVEK Sbjct: 121 VAFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLKVMVSIFGRVTPVELEFIQVEK 175 >gi|262363486|gb|ACY60207.1| transcription antitermination protein [Yersinia pestis D106004] Length = 181 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ YS E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAYSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|331007102|ref|ZP_08330325.1| Transcription antitermination protein NusG [gamma proteobacterium IMCC1989] gi|330419097|gb|EGG93540.1| Transcription antitermination protein NusG [gamma proteobacterium IMCC1989] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EKK ++ R+ + + L E+ +P+E VV +R G+K SER+F Sbjct: 1 MSKRWYVVHAYSGYEKKVSAALKERIELNDMQELFGEVLVPTEEVVEMRAGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD +H +K+TP+V+GF+G + P+P+T+ E + I+ +++ +V++P Sbjct: 61 FPGYVLVQMELTDASWHLVKETPRVMGFIGGKADEPAPITEKEADLILQRIDDSVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTIFEPGEMVRVIDGPFNDFNGVVEEVNYDKSRLQVAVLIFGRSTPVELEFGQVEK 176 >gi|284009039|emb|CBA75992.1| transcription antitermination protein [Arsenophonus nasoniae] Length = 181 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E V+ +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEARVAQSLREHIKLHAMEDKFGEVMVPTEEVMEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMTMDDDSWHLVRSVPRVMGFIGGTPDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+ Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181 >gi|86739281|ref|YP_479681.1| transcription antitermination protein nusG [Frankia sp. CcI3] gi|86566143|gb|ABD09952.1| transcription antitermination protein nusG [Frankia sp. CcI3] Length = 277 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY Sbjct: 104 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 163 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V ++ Sbjct: 164 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPVVPKEKKVETVRVQE 223 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 224 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 277 >gi|289209341|ref|YP_003461407.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix] gi|288944972|gb|ADC72671.1| NusG antitermination factor [Thioalkalivibrio sp. K90mix] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 79/176 (44%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E + S+ R+ R G+ +I +P+E VV ++ G+K SER+F Sbjct: 1 MALRWYVVQAFSGFEAQVKRSLEERIERFGMQDHFGQILVPTEEVVEMKDGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D+ +H +K P+V+GF+G + P+P++D E + I+ +++ ++P Sbjct: 61 FPGYVLVQMDLNDEAWHLVKAVPRVLGFIGGTADRPAPISDKEADAILQRMQEGAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 KVLFEVGEMVRVTDGPFNDFNGVVEEVNYEKSRLLVAVQIFGRSTPVELEFHQVEK 176 >gi|168777407|ref|ZP_02802414.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4196] gi|187767347|gb|EDU31191.1| transcription termination/antitermination factor NusG [Escherichia coli O157:H7 str. EC4196] Length = 181 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQHVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|146308935|ref|YP_001189400.1| transcription antitermination protein NusG [Pseudomonas mendocina ymp] gi|145577136|gb|ABP86668.1| transcription antitermination protein nusG [Pseudomonas mendocina ymp] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H IKDTP+V+GF+G + P+P+T+ E E I+ +V + +P Sbjct: 61 FPGYVLVQMEMNEATWHLIKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 KTLFEPGEMVRVVDGPFADFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 176 >gi|242241132|ref|YP_002989313.1| transcription antitermination protein NusG [Dickeya dadantii Ech703] gi|251791448|ref|YP_003006169.1| transcription antitermination protein NusG [Dickeya zeae Ech1591] gi|242133189|gb|ACS87491.1| NusG antitermination factor [Dickeya dadantii Ech703] gi|247540069|gb|ACT08690.1| NusG antitermination factor [Dickeya zeae Ech1591] Length = 181 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|254449106|ref|ZP_05062558.1| transcription termination/antitermination factor NusG [gamma proteobacterium HTCC5015] gi|198261298|gb|EDY85591.1| transcription termination/antitermination factor NusG [gamma proteobacterium HTCC5015] Length = 175 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ YS E K + R+ R GL +I +PSE VV R G+K SER+FFP Sbjct: 1 MRWYVVQAYSGFEAKVKALLEERIERLGLSECFGDILVPSEEVVENRDGKKRRSERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +KDTPKV+GF+G E P+P+++ E + I+++V+ +V +P V Sbjct: 61 GYVLVQMEMDDETWHLVKDTPKVLGFIGGNKERPAPISEREAQQIIDRVQESVDKPRPKV 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ VD EKSR+ V V+IFGR TPV+L ++QVEK Sbjct: 121 LFEAGESVRVIDGPFNDFNGVVEEVDFEKSRLKVSVLIFGRSTPVDLEFSQVEK 174 >gi|126666825|ref|ZP_01737802.1| transcription antitermination protein NusG [Marinobacter sp. ELB17] gi|126628870|gb|EAZ99490.1| transcription antitermination protein NusG [Marinobacter sp. ELB17] Length = 177 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + ++ R++ +GL+ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKHVMRTLKERVALNGLEEQFGEILVPTEEVVEMRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ + D +H +K+TP+V+GF+G E P+P+T+ E + I+ ++E+ +P Sbjct: 61 YPGYVLVQMELEDATWHLVKNTPRVLGFIGGTKEKPAPITEKEADAILRRLESGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V +GPFA FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFEPGEVVRVVEGPFADFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 176 >gi|269926929|ref|YP_003323552.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269790589|gb|ACZ42730.1| NusG antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 201 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS E K + R+ G+ + +I +P+ + +R+G++ +++ FPG Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ M D ++ ++ TP V GF+G+G P+P+ + E+E I+ ++ + P + Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRMSE--EPPKVKMSL 146 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +GE V + DGPF F G V ++EEK +V V + IFGR TPVEL + QVEKIV Sbjct: 147 RLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKIV 200 >gi|253987827|ref|YP_003039183.1| transcription antitermination protein NusG [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779277|emb|CAQ82438.1| transcription antitermination protein [Photorhabdus asymbiotica] Length = 181 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK+ Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKV 181 >gi|146281158|ref|YP_001171311.1| transcription antitermination protein NusG [Pseudomonas stutzeri A1501] gi|145569363|gb|ABP78469.1| transcription antitermination protein NusG [Pseudomonas stutzeri A1501] Length = 177 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK + S+ R+ +G++ EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +KDTP+V+GF+G + P+P+TD E E I+ +V +P Sbjct: 61 FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 KTLFEPGEVVRVADGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 177 >gi|134298080|ref|YP_001111576.1| NusG antitermination factor [Desulfotomaculum reducens MI-1] gi|134050780|gb|ABO48751.1| transcription antitermination protein nusG [Desulfotomaculum reducens MI-1] Length = 175 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 111/176 (63%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++ Sbjct: 1 MSKQWYVVHTYSGYENKVKANLERRIESMNMEDKIFRILVPMEDEVEIKNGKKKVSKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ +MTD ++ +++TP V GF+GTG P P+ + E + I+ Q+ ++ P + Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGTGSKPIPLDEEEAKTIIKQMG--IEEPKAK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V V+DGPF +F G+++ + +K +V V V +FGR TP+EL + Q+EK+ Sbjct: 119 IDVVLGENVKVTDGPFENFVGVIEEIYPDKGKVKVMVSMFGRETPIELDFTQIEKL 174 >gi|121997661|ref|YP_001002448.1| NusG antitermination factor [Halorhodospira halophila SL1] gi|121589066|gb|ABM61646.1| transcription antitermination protein nusG [Halorhodospira halophila SL1] Length = 177 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++ YS EK+ S+ R+ R+G++ EI +P+E VV +R+G+K SER+F Sbjct: 1 MALRWYVIHAYSGFEKQVQRSLQERIRRAGMEDKFGEILVPTEEVVEMREGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+ P+V+GF+G + P+P++D E E I+++V ++P Sbjct: 61 FPGYVLVQMELDDDTWHLVKEVPRVMGFIGGRPDRPAPISDREAEQILSRVREGAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V+DGPF FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KVLFEVGEIVRVTDGPFTDFNGAVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 176 >gi|325288565|ref|YP_004264746.1| transcription antitermination protein nusG [Syntrophobotulus glycolicus DSM 8271] gi|324963966|gb|ADY54745.1| transcription antitermination protein nusG [Syntrophobotulus glycolicus DSM 8271] Length = 175 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++ YS E K ++ R+ ++ + + +P E + V+ G+K S+R+ Sbjct: 1 MSKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMEDEIEVKNGKKKISKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ MTD ++ +++TP V GF+G+G P P+ + E+ +I+ Q+ +++ Sbjct: 61 FPGYVLVEMDMTDDSWYVVRNTPGVTGFVGSGSKPLPLLEHEVANILRQMG--LEKVRHK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VG+ V V GPF G+++ + EEK++V V V +FGR TPVEL + QV+K+ Sbjct: 119 IDVNVGQSVKVISGPFKDTIGVIQEILEEKAKVRVSVSMFGRETPVELEFGQVQKL 174 >gi|86158012|ref|YP_464797.1| transcription antitermination protein nusG [Anaeromyxobacter dehalogenans 2CP-C] gi|85774523|gb|ABC81360.1| transcription antitermination protein nusG [Anaeromyxobacter dehalogenans 2CP-C] Length = 179 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHALQDSFGEVLIPMEVVQEMVKGEKKTSKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117 FPGY+L+ M + +H +K TPKV GF+G + P V D E++ + Q+ +P Sbjct: 61 FPGYILVNMEMNLQTWHLVKGTPKVTGFVGNAKTPDQVPAVSDIEVQRLTTQISEGSLKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178 >gi|260913287|ref|ZP_05919769.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632874|gb|EEX51043.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 184 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 112/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFP Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHHMEEQFGEVLVPTEEVVENVAGKRRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H ++ P+V+GF+G + P+P++ E + I+N+++ + ++P Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK Sbjct: 128 EFQPGEEVRVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181 >gi|300725138|ref|YP_003714466.1| transcription antitermination protein [Xenorhabdus nematophila ATCC 19061] gi|297631683|emb|CBJ92396.1| component in transcription antitermination [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLQDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H +++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|328955955|ref|YP_004373288.1| transcription antitermination protein nusG [Coriobacterium glomerans PW2] gi|328456279|gb|AEB07473.1| transcription antitermination protein nusG [Coriobacterium glomerans PW2] Length = 178 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERR 59 M+ RWY+V YS E + + R+ G+ + +I IP E V +++G + + Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLERRIESMGMQDRIFDIEIPIEHVTEIKEGGHRETKDAK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGANGKPAPLSRDEFNKMMRRSSKGEAPKRT 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V EVG V V+ GP A F+G V V+ E +V V ++IFGR TPVEL+++QV I Sbjct: 121 AVGLEVGTTVRVTSGPLADFDGQVAEVNAEAGKVKVILLIFGRETPVELSFDQVAAI 177 >gi|91785478|ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans LB400] gi|187925629|ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia phytofirmans PsJN] gi|296163264|ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1] gi|307731268|ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003] gi|323527615|ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001] gi|91689432|gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans LB400] gi|187716823|gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN] gi|295886500|gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1] gi|307585803|gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003] gi|323384617|gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001] Length = 185 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >gi|158317804|ref|YP_001510312.1| NusG antitermination factor [Frankia sp. EAN1pec] gi|158113209|gb|ABW15406.1| NusG antitermination factor [Frankia sp. EAN1pec] Length = 273 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY Sbjct: 100 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--F 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ + Sbjct: 160 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVSILAPAAPKEKKVETVKAQE 219 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 220 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 273 >gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783867|emb|CAE12729.1| transcription antitermination factor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 181 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHDMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMIMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|187930386|ref|YP_001900873.1| transcription antitermination protein NusG [Ralstonia pickettii 12J] gi|309782812|ref|ZP_07677532.1| transcription termination/antitermination factor NusG [Ralstonia sp. 5_7_47FAA] gi|187727276|gb|ACD28441.1| NusG antitermination factor [Ralstonia pickettii 12J] gi|308918236|gb|EFP63913.1| transcription termination/antitermination factor NusG [Ralstonia sp. 5_7_47FAA] Length = 194 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FP Sbjct: 20 KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV ++ MTD+ +H +K+T KV GF+G G PSP++ SE++ IM Q++ V++P Sbjct: 80 GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|15603609|ref|NP_246683.1| transcription antitermination protein NusG [Pasteurella multocida subsp. multocida str. Pm70] gi|18202810|sp|Q9CK84|NUSG_PASMU RecName: Full=Transcription antitermination protein nusG gi|12722159|gb|AAK03828.1| NusG [Pasteurella multocida subsp. multocida str. Pm70] Length = 183 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 112/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER+FFP Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H ++ P+V+GF+G + P+P++ E + I+N+++ + ++P Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK Sbjct: 128 EFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181 >gi|296533970|ref|ZP_06896488.1| transcription termination/antitermination factor NusG [Roseomonas cervicalis ATCC 49957] gi|296265701|gb|EFH11808.1| transcription termination/antitermination factor NusG [Roseomonas cervicalis ATCC 49957] Length = 178 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 94/178 (52%), Positives = 127/178 (71%), Gaps = 2/178 (1%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M +WY+V VYS EKK + + + ++ GL + +I +PSE V VR+G+K+NSER+ Sbjct: 1 MADMKWYVVHVYSGFEKKIAQQLKEQAAQKGLADQIGDILVPSEEVTEVRRGQKINSERK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-V 118 FFPGYVL+K MTD+ +H +KDTPKV GFLG PSP++++E + I+ QV+ V +P Sbjct: 61 FFPGYVLVKMAMTDEAWHLVKDTPKVTGFLGARNRPSPISEAEAQRIVRQVQEGVDKPKR 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V FEVGE+V V+DGPF SFNG ++ VDEE+ RV V V IFGR TPVEL Y QVEK+ Sbjct: 121 PAVVFEVGEQVRVADGPFTSFNGTIEEVDEERGRVKVSVSIFGRATPVELEYAQVEKV 178 >gi|300309442|ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] gi|300072227|gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R++R+G+ +I +P+E VV ++ G K +ERRFFP Sbjct: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ ++ Q++ V++P V Sbjct: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V + +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + Q+EK+ Sbjct: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 >gi|290477021|ref|YP_003469933.1| transcription antitermination protein [Xenorhabdus bovienii SS-2004] gi|289176366|emb|CBJ83171.1| component in transcription antitermination [Xenorhabdus bovienii SS-2004] Length = 181 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLDGMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IM++++ +P Sbjct: 67 GYVLVQMVMNDATWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMDRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|260893763|ref|YP_003239860.1| NusG antitermination factor [Ammonifex degensii KC4] gi|260865904|gb|ACX53010.1| NusG antitermination factor [Ammonifex degensii KC4] Length = 175 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 112/175 (64%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E K ++ R++ ++ + I IP E V+ ++ G+K ++RR F Sbjct: 3 ERRWYVIHTYSGYENKVKANLEKRIASMNMEDKIFNIVIPEEDVIEIKDGKKKATKRRIF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+L++ ++TD+ ++ +++TP V GF+G+G P P++D E+E I+ + + P + Sbjct: 63 PGYILVEMILTDESWYVVRNTPGVTGFVGSGNKPVPLSDEEVEEILKRTRG--EAPRFRI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V+ GPF +F G+V+ V+ EK+++ V + +FGR TP+EL Y QVEKI Sbjct: 121 DISPGEKVRVTSGPFQNFIGVVEEVNTEKAKLRVMISMFGRETPIELDYTQVEKI 175 >gi|311109630|ref|YP_003982483.1| transcription termination/antitermination factor NusG [Achromobacter xylosoxidans A8] gi|310764319|gb|ADP19768.1| transcription termination/antitermination factor NusG [Achromobacter xylosoxidans A8] gi|317401591|gb|EFV82218.1| transcription antitermination protein NusG [Achromobacter xylosoxidans C54] Length = 177 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEVKGGQKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I++Q+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|139438532|ref|ZP_01772048.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC 25986] gi|133776071|gb|EBA39891.1| Hypothetical protein COLAER_01046 [Collinsella aerofaciens ATCC 25986] Length = 178 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 1/174 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ RWY+V YS E + + R+ G+ + +I IP ERV +++G ++ + + Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIEIPMERVTEIKEGGKRETKDSK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D + +++TP V GFLG P+P++ E + + + Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGNGKPAPLSRDEYNKMTRRPGKGDSPKRT 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 SV +VG V V+DGP F+G V V+ E ++ V ++IFGR TPVEL +NQV Sbjct: 121 SVDIQVGTSVRVTDGPLTDFDGKVSEVNTEAGKLKVTLMIFGRETPVELDFNQV 174 >gi|317046439|ref|YP_004114087.1| NusG antitermination factor [Pantoea sp. At-9b] gi|316948056|gb|ADU67531.1| NusG antitermination factor [Pantoea sp. At-9b] Length = 181 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|238798658|ref|ZP_04642132.1| Transcription antitermination protein nusG [Yersinia mollaretii ATCC 43969] gi|238717476|gb|EEQ09318.1| Transcription antitermination protein nusG [Yersinia mollaretii ATCC 43969] Length = 181 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|163859291|ref|YP_001633589.1| transcription antitermination protein NusG [Bordetella petrii DSM 12804] gi|163263019|emb|CAP45322.1| transcription antitermination protein NusG [Bordetella petrii] Length = 177 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+GL I +PSE VV ++ G+K SERR Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALNERIERAGLQTSFGRILVPSEEVVEMKGGQKSISERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I++Q+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|297180665|gb|ADI16874.1| transcription antiterminator [uncultured gamma proteobacterium HF0010_16J05] Length = 177 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 79/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+V YS EK ++ R+ S L EI +P+E VV +R G+K SER+F Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVDLSEHKDLFGEILVPTEEVVEMRGGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P++ E I+++V A ++ Sbjct: 61 FPGYVLVEMELNDDTWHLVKETPRVMGFIGGKADQPAPLSPREAASILDRVAAGSEKATP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLQVAVTIFGRSTPVELDFGQVEK 176 >gi|158520714|ref|YP_001528584.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3] gi|158509540|gb|ABW66507.1| NusG antitermination factor [Desulfococcus oleovorans Hxd3] Length = 176 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 118/176 (67%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V VYS E K +S+ R++ SG E+ +P+E+VV + KG+K S R+F Sbjct: 1 MALKWYVVHVYSGFENKVQKSLEDRIASSGCAEKFGEVIVPTEQVVELVKGKKKESSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY+L++ + D+ +H + +T KV GFLG P+P+TD E + I+ ++EA +P Sbjct: 61 YPGYILVQMELDDETWHVVANTAKVTGFLGGKNKPAPITDQEADKILERIEAGKLKPQPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V++GPFA+F+G+V+ V++EK ++ V V IFGR TPVEL + QV K+ Sbjct: 121 YSFEVGDEVRVTEGPFATFSGLVETVNQEKGKLRVLVSIFGRSTPVELDFMQVAKL 176 >gi|33591283|ref|NP_878927.1| transcription antitermination protein NusG [Bordetella pertussis Tohama I] gi|33599002|ref|NP_886562.1| transcription antitermination protein NusG [Bordetella bronchiseptica RB50] gi|33570925|emb|CAE40389.1| transcription antitermination protein NusG [Bordetella pertussis Tohama I] gi|33575048|emb|CAE30511.1| transcription antitermination protein NusG [Bordetella bronchiseptica RB50] Length = 177 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 87/176 (49%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I+NQ+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|16762305|ref|NP_457922.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767402|ref|NP_463017.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26250751|ref|NP_756791.1| transcription antitermination protein NusG [Escherichia coli CFT073] gi|29143793|ref|NP_807135.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62182602|ref|YP_219019.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|91212813|ref|YP_542799.1| transcription antitermination protein NusG [Escherichia coli UTI89] gi|110644317|ref|YP_672047.1| transcription antitermination protein NusG [Escherichia coli 536] gi|117626246|ref|YP_859569.1| transcription antitermination protein NusG [Escherichia coli APEC O1] gi|152972839|ref|YP_001337985.1| transcription antitermination protein NusG [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156935821|ref|YP_001439737.1| transcription antitermination protein NusG [Cronobacter sakazakii ATCC BAA-894] gi|161505371|ref|YP_001572483.1| transcription antitermination protein NusG [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617284|ref|YP_001591249.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554342|ref|ZP_02348083.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995347|ref|ZP_02576437.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239843|ref|ZP_02664901.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245301|ref|ZP_02670233.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264792|ref|ZP_02686765.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467920|ref|ZP_02701757.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|170770133|ref|ZP_02904586.1| transcription termination/antitermination factor NusG [Escherichia albertii TW07627] gi|191172735|ref|ZP_03034273.1| transcription termination/antitermination factor NusG [Escherichia coli F11] gi|194442714|ref|YP_002043400.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447628|ref|YP_002048135.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469896|ref|ZP_03075880.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735416|ref|YP_002117051.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249353|ref|YP_002149059.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198241913|ref|YP_002218065.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388673|ref|ZP_03215285.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354449|ref|YP_002228250.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859326|ref|YP_002245977.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022866|ref|ZP_03337313.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163867|ref|ZP_03349577.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417733|ref|ZP_03350853.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425733|ref|ZP_03358483.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585780|ref|ZP_03367606.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213623116|ref|ZP_03375899.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650883|ref|ZP_03380936.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852740|ref|ZP_03382272.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215489314|ref|YP_002331745.1| transcription antitermination protein NusG [Escherichia coli O127:H6 str. E2348/69] gi|218561048|ref|YP_002393961.1| transcription antitermination protein NusG [Escherichia coli S88] gi|218692263|ref|YP_002400475.1| transcription antitermination protein NusG [Escherichia coli ED1a] gi|224585690|ref|YP_002639489.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227885489|ref|ZP_04003294.1| transcription antitermination protein NusG [Escherichia coli 83972] gi|237702749|ref|ZP_04533230.1| transcription antitermination protein nusG [Escherichia sp. 3_2_53FAA] gi|238892452|ref|YP_002917186.1| transcription antitermination protein NusG [Klebsiella pneumoniae NTUH-K2044] gi|238913727|ref|ZP_04657564.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|262043786|ref|ZP_06016888.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|289826708|ref|ZP_06545673.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|300979572|ref|ZP_07174615.1| transcription termination/antitermination factor NusG [Escherichia coli MS 45-1] gi|300985575|ref|ZP_07177491.1| transcription termination/antitermination factor NusG [Escherichia coli MS 200-1] gi|301047715|ref|ZP_07194775.1| transcription termination/antitermination factor NusG [Escherichia coli MS 185-1] gi|306811997|ref|ZP_07446205.1| transcription antitermination protein NusG [Escherichia coli NC101] gi|311281468|ref|YP_003943699.1| NusG antitermination factor [Enterobacter cloacae SCF1] gi|312965365|ref|ZP_07779598.1| transcription termination/antitermination factor NusG [Escherichia coli 2362-75] gi|330004995|ref|ZP_08305079.1| transcription termination/antitermination factor NusG [Klebsiella sp. MS 92-3] gi|331649835|ref|ZP_08350913.1| transcription termination/antitermination factor NusG [Escherichia coli M605] gi|331660541|ref|ZP_08361474.1| transcription termination/antitermination factor NusG [Escherichia coli TA206] gi|88914910|sp|P0AA03|NUSG_SALTI RecName: Full=Transcription antitermination protein nusG gi|90110822|sp|P0AA01|NUSG_ECOL6 RecName: Full=Transcription antitermination protein nusG gi|90110823|sp|P0AA02|NUSG_SALTY RecName: Full=Transcription antitermination protein nusG gi|25299619|pir||AB0934 transcription antitermination protein STY3737 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|26111182|gb|AAN83365.1|AE016770_165 Transcription antitermination protein nusG [Escherichia coli CFT073] gi|6960335|gb|AAF33495.1| 99% identity over 181 amino acids with E. coli transcription antitermination factor (NUSG) (SW:P16921) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422705|gb|AAL22976.1| component in transcription antitermination [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504609|emb|CAD09492.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139428|gb|AAO70995.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62130235|gb|AAX67938.1| component in transcription antitermination [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|91074387|gb|ABE09268.1| transcription antitermination protein [Escherichia coli UTI89] gi|110345909|gb|ABG72146.1| transcription antitermination protein NusG [Escherichia coli 536] gi|115515370|gb|ABJ03445.1| transcription antitermination protein NusG [Escherichia coli APEC O1] gi|150957688|gb|ABR79718.1| transcription antitermination protein NusG [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534075|gb|ABU78901.1| hypothetical protein ESA_03697 [Cronobacter sakazakii ATCC BAA-894] gi|160866718|gb|ABX23341.1| hypothetical protein SARI_03516 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366648|gb|ABX70416.1| hypothetical protein SPAB_05135 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|170121015|gb|EDS89946.1| transcription termination/antitermination factor NusG [Escherichia albertii TW07627] gi|190907039|gb|EDV66640.1| transcription termination/antitermination factor NusG [Escherichia coli F11] gi|194401377|gb|ACF61599.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405932|gb|ACF66151.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456260|gb|EDX45099.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710918|gb|ACF90139.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629016|gb|EDX48408.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213056|gb|ACH50453.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197287542|gb|EDY26935.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936429|gb|ACH73762.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605771|gb|EDZ04316.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274230|emb|CAR39249.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321448|gb|EDZ09287.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205326985|gb|EDZ13749.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335974|gb|EDZ22738.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346818|gb|EDZ33449.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711129|emb|CAR35503.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|215267386|emb|CAS11837.1| transcription termination factor [Escherichia coli O127:H6 str. E2348/69] gi|218367817|emb|CAR05612.1| transcription termination factor [Escherichia coli S88] gi|218429827|emb|CAR10653.1| transcription termination factor [Escherichia coli ED1a] gi|222035693|emb|CAP78438.1| Transcription antitermination protein nusG [Escherichia coli LF82] gi|224470218|gb|ACN48048.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226903062|gb|EEH89321.1| transcription antitermination protein nusG [Escherichia sp. 3_2_53FAA] gi|227837563|gb|EEJ48029.1| transcription antitermination protein NusG [Escherichia coli 83972] gi|238544768|dbj|BAH61119.1| transcription antitermination protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038873|gb|EEW40042.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|261249252|emb|CBG27114.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996446|gb|ACY91331.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281181046|dbj|BAI57376.1| transcription antitermination protein [Escherichia coli SE15] gi|294493401|gb|ADE92157.1| transcription termination/antitermination factor NusG [Escherichia coli IHE3034] gi|300300400|gb|EFJ56785.1| transcription termination/antitermination factor NusG [Escherichia coli MS 185-1] gi|300306521|gb|EFJ61041.1| transcription termination/antitermination factor NusG [Escherichia coli MS 200-1] gi|300409476|gb|EFJ93014.1| transcription termination/antitermination factor NusG [Escherichia coli MS 45-1] gi|301160644|emb|CBW20175.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305854602|gb|EFM55038.1| transcription antitermination protein NusG [Escherichia coli NC101] gi|307556125|gb|ADN48900.1| transcription antitermination protein NusG [Escherichia coli ABU 83972] gi|307628401|gb|ADN72705.1| transcription antitermination protein NusG [Escherichia coli UM146] gi|308750663|gb|ADO50415.1| NusG antitermination factor [Enterobacter cloacae SCF1] gi|312290039|gb|EFR17926.1| transcription termination/antitermination factor NusG [Escherichia coli 2362-75] gi|312915253|dbj|BAJ39227.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312948556|gb|ADR29383.1| transcription antitermination protein NusG [Escherichia coli O83:H1 str. NRG 857C] gi|315288350|gb|EFU47748.1| transcription termination/antitermination factor NusG [Escherichia coli MS 110-3] gi|315294336|gb|EFU53687.1| transcription termination/antitermination factor NusG [Escherichia coli MS 153-1] gi|315300755|gb|EFU59980.1| transcription termination/antitermination factor NusG [Escherichia coli MS 16-3] gi|320088579|emb|CBY98338.1| Transcription antitermination protein nusG [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320197123|gb|EFW71741.1| Transcription antitermination protein NusG [Escherichia coli WV_060327] gi|321223348|gb|EFX48415.1| Transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616258|gb|EFY13168.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617299|gb|EFY14201.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625929|gb|EFY22744.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626673|gb|EFY23475.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631508|gb|EFY28265.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635221|gb|EFY31939.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642612|gb|EFY39206.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646785|gb|EFY43289.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650784|gb|EFY47177.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655917|gb|EFY52218.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657316|gb|EFY53595.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665578|gb|EFY61763.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669761|gb|EFY65906.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670960|gb|EFY67092.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679216|gb|EFY75269.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679374|gb|EFY75421.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688141|gb|EFY84105.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717098|gb|EFZ08669.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132483|gb|ADX19913.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323190161|gb|EFZ75439.1| transcription termination/antitermination factor NusG [Escherichia coli RN587/1] gi|323193409|gb|EFZ78619.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200671|gb|EFZ85744.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202160|gb|EFZ87216.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209271|gb|EFZ94206.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211596|gb|EFZ96433.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218066|gb|EGA02779.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221355|gb|EGA05777.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225718|gb|EGA09939.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230994|gb|EGA15111.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235776|gb|EGA19858.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240090|gb|EGA24136.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242577|gb|EGA26599.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249715|gb|EGA33622.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252598|gb|EGA36439.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256908|gb|EGA40620.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262070|gb|EGA45634.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263925|gb|EGA47439.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268462|gb|EGA51932.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323948846|gb|EGB44743.1| transcription termination/antitermination protein NusG [Escherichia coli H252] gi|323953805|gb|EGB49612.1| transcription termination/antitermination protein NusG [Escherichia coli H263] gi|324009471|gb|EGB78690.1| transcription termination/antitermination factor NusG [Escherichia coli MS 57-2] gi|324015277|gb|EGB84496.1| transcription termination/antitermination factor NusG [Escherichia coli MS 60-1] gi|326625858|gb|EGE32203.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629582|gb|EGE35925.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|328536459|gb|EGF62807.1| transcription termination/antitermination factor NusG [Klebsiella sp. MS 92-3] gi|330908299|gb|EGH36818.1| transcription antitermination protein NusG [Escherichia coli AA86] gi|331041301|gb|EGI13453.1| transcription termination/antitermination factor NusG [Escherichia coli M605] gi|331052324|gb|EGI24362.1| transcription termination/antitermination factor NusG [Escherichia coli TA206] Length = 181 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|15640350|ref|NP_229977.1| transcription antitermination protein NusG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae 2740-80] gi|147673290|ref|YP_001218591.1| transcription antitermination protein NusG [Vibrio cholerae O395] gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2] gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2] gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX 330286] gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33] gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9] gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM 11079-80] gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae 12129(1)] gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae MJ-1236] gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae AM-19226] gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10] gi|255747124|ref|ZP_05421067.1| transcription antitermination protein NusG [Vibrio cholera CIRS 101] gi|258620708|ref|ZP_05715743.1| transcription antitermination protein NusG [Vibrio mimicus VM573] gi|258624493|ref|ZP_05719439.1| transcription antitermination protein NusG [Vibrio mimicus VM603] gi|262166950|ref|ZP_06034670.1| transcription antitermination protein NusG [Vibrio cholerae RC27] gi|262172579|ref|ZP_06040257.1| transcription antitermination protein NusG [Vibrio mimicus MB-451] gi|262401584|ref|ZP_06078151.1| transcription antitermination protein NusG [Vibrio sp. RC586] gi|297582227|ref|ZP_06944143.1| transcription antitermination protein NusG [Vibrio cholerae RC385] gi|298501284|ref|ZP_07011081.1| transcription termination/antitermination factor NusG [Vibrio cholerae MAK 757] gi|18203205|sp|Q9KV35|NUSG_VIBCH RecName: Full=Transcription antitermination protein nusG gi|9654736|gb|AAF93496.1| transcription antitermination protein NusG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546217|gb|EAX56537.1| transcription antitermination protein NusG [Vibrio cholerae 2740-80] gi|146315173|gb|ABQ19712.1| transcription antitermination protein NusG [Vibrio cholerae O395] gi|149738976|gb|EDM53292.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2] gi|150421804|gb|EDN13805.1| transcription antitermination protein NusG [Vibrio cholerae AM-19226] gi|227008423|gb|ACP04635.1| transcription antitermination protein NusG [Vibrio cholerae M66-2] gi|227012179|gb|ACP08389.1| transcription antitermination protein NusG [Vibrio cholerae O395] gi|229335539|gb|EEO01020.1| transcription antitermination protein NusG [Vibrio cholerae 12129(1)] gi|229343102|gb|EEO08087.1| transcription antitermination protein NusG [Vibrio cholerae TM 11079-80] gi|229346972|gb|EEO11939.1| transcription antitermination protein NusG [Vibrio cholerae RC9] gi|229354322|gb|EEO19251.1| transcription antitermination protein NusG [Vibrio cholerae B33] gi|229355987|gb|EEO20906.1| transcription antitermination protein NusG [Vibrio cholerae BX 330286] gi|229369051|gb|ACQ59474.1| transcription antitermination protein NusG [Vibrio cholerae MJ-1236] gi|254847337|gb|EET25751.1| transcription antitermination protein NusG [Vibrio cholerae MO10] gi|255735173|gb|EET90575.1| transcription antitermination protein NusG [Vibrio cholera CIRS 101] gi|258583242|gb|EEW08045.1| transcription antitermination protein NusG [Vibrio mimicus VM603] gi|258586906|gb|EEW11620.1| transcription antitermination protein NusG [Vibrio mimicus VM573] gi|261893655|gb|EEY39641.1| transcription antitermination protein NusG [Vibrio mimicus MB-451] gi|262024655|gb|EEY43336.1| transcription antitermination protein NusG [Vibrio cholerae RC27] gi|262352299|gb|EEZ01428.1| transcription antitermination protein NusG [Vibrio sp. RC586] gi|297533528|gb|EFH72373.1| transcription antitermination protein NusG [Vibrio cholerae RC385] gi|297539975|gb|EFH76039.1| transcription termination/antitermination factor NusG [Vibrio cholerae MAK 757] gi|327483189|gb|AEA77596.1| Transcription antitermination protein NusG [Vibrio cholerae LMA3894-4] Length = 182 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 119/175 (68%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|219848385|ref|YP_002462818.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485] gi|219542644|gb|ACL24382.1| NusG antitermination factor [Chloroflexus aggregans DSM 9485] Length = 187 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +PG Sbjct: 15 RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V + Sbjct: 75 YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQME--GETPKVRVSY 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + G+ V + DGPF F GIV ++D E+ RV V V FGR PVEL + QV K+V Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDSIDHERGRVRVLVSFFGREAPVELDFLQVTKLV 186 >gi|197286619|ref|YP_002152491.1| transcription antitermination protein NusG [Proteus mirabilis HI4320] gi|227355188|ref|ZP_03839597.1| transcription antitermination protein [Proteus mirabilis ATCC 29906] gi|194684106|emb|CAR45505.1| transcription antitermination protein [Proteus mirabilis HI4320] gi|227164697|gb|EEI49551.1| transcription antitermination protein [Proteus mirabilis ATCC 29906] Length = 181 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLNEMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H +++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDATWHLVRNVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|188532309|ref|YP_001906106.1| transcription antitermination protein NusG [Erwinia tasmaniensis Et1/99] gi|259906924|ref|YP_002647280.1| transcription antitermination protein NusG [Erwinia pyrifoliae Ep1/96] gi|188027351|emb|CAO95196.1| Transcription antitermination protein [Erwinia tasmaniensis Et1/99] gi|224962546|emb|CAX54001.1| Transcription antitermination protein [Erwinia pyrifoliae Ep1/96] gi|283476717|emb|CAY72546.1| Transcription antitermination protein nusG [Erwinia pyrifoliae DSM 12163] gi|310766069|gb|ADP11019.1| transcription antitermination protein NusG [Erwinia sp. Ejp617] Length = 181 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|89095350|ref|ZP_01168267.1| transcription antitermination protein NusG [Oceanospirillum sp. MED92] gi|89080392|gb|EAR59647.1| transcription antitermination protein NusG [Oceanospirillum sp. MED92] Length = 177 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RW++V YS EK+ + ++ R+ + L E+ +P+E VV +R G+K SER+F Sbjct: 1 MSKRWFVVHAYSGYEKRVMNTLKERIELHSMQDLFGEVLVPTEEVVEIRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL+ M D+ +H +K+TP V+GF+G P+P+T++E I+++VE+ V +P Sbjct: 61 YPGYVLVHMDMNDESWHLVKNTPHVLGFIGGTAGKPAPITEAEANEILSRVESGVDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA F+ +V+ ++ EK+++ V V IFGR TPVEL + QVEK Sbjct: 121 KTVFEPGEMVRVIDGPFADFDAVVEEINYEKNKLQVAVQIFGRTTPVELDFIQVEK 176 >gi|271498787|ref|YP_003331812.1| NusG antitermination factor [Dickeya dadantii Ech586] gi|270342342|gb|ACZ75107.1| NusG antitermination factor [Dickeya dadantii Ech586] Length = 181 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|269837636|ref|YP_003319864.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269786899|gb|ACZ39042.1| NusG antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 200 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +++ R+ + + E+ +P++ V +R G++ + +R+ FPG Sbjct: 29 QWYVVHTYSGYENKVRQNLLHRIETMDMADKIFEVVVPTQEEVEIRSGQRHSVQRKVFPG 88 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ +M D ++ +++TP V GF+G G P+P+ + E++ IM +E + P V Sbjct: 89 YVLVRMIMDDDSWYVVRNTPGVTGFVGMGNKPTPLGEDEVQAIMRGME--AEAPRVKVSL 146 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VG+ V + DGPF+ F G V +D+EK +V V V FGR TPV L + QVE+ Sbjct: 147 AVGDVVRIIDGPFSDFRGTVDEIDQEKGKVRVLVSFFGRETPVTLDFLQVER 198 >gi|163847740|ref|YP_001635784.1| transcription termination/antitermination factor NusG [Chloroflexus aurantiacus J-10-fl] gi|222525603|ref|YP_002570074.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl] gi|163669029|gb|ABY35395.1| transcription termination/antitermination factor NusG [Chloroflexus aurantiacus J-10-fl] gi|222449482|gb|ACM53748.1| NusG antitermination factor [Chloroflexus sp. Y-400-fl] Length = 187 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +++ R++ + + + +P+E + ++ G++ ++ +PG Sbjct: 15 RWYVIHTYSGYENKVKKNLEHRIASMEMQDQIFRVIVPTEEEIEIKNGQRRTVNKKIYPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ +TD ++ +++TP V F+G G P+P+ D E++ I+ Q+E + P V + Sbjct: 75 YVLVQMRLTDDSWYVVRNTPGVTSFVGHGNKPTPLDDEEVKAILRQME--GETPKVRVSY 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + G+ V + DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V Sbjct: 133 QKGQAVKIIDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 186 >gi|92112542|ref|YP_572470.1| transcription antitermination protein NusG [Chromohalobacter salexigens DSM 3043] gi|91795632|gb|ABE57771.1| transcription antitermination protein nusG [Chromohalobacter salexigens DSM 3043] Length = 177 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV +R G++ SER+F Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLMERVKMYGMEDQFGEILVPTEEVVEMRDGKRRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H + +TP+V+GF+G E P+P+T E + I+ +V+ +P Sbjct: 61 YPGYVLVEMEMTDASWHLVNETPRVMGFIGGTPEKPAPITQKEADGILRRVQDGTDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V DGPFA FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTLFDPGETVRVVDGPFADFNGVVEEVNYEKSRLQVSVLIFGRSTPVELEFAQVEK 176 >gi|283836718|ref|ZP_06356459.1| transcription termination/antitermination factor NusG [Citrobacter youngae ATCC 29220] gi|291067265|gb|EFE05374.1| transcription termination/antitermination factor NusG [Citrobacter youngae ATCC 29220] Length = 181 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|83648864|ref|YP_437299.1| transcription antitermination protein NusG [Hahella chejuensis KCTC 2396] gi|83636907|gb|ABC32874.1| transcription termination/antitermination factor NusG [Hahella chejuensis KCTC 2396] Length = 177 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RW++VQ YS EK + S+ R+ G++ EI +P+E VV +++G+K SER+F Sbjct: 1 MSKRWFVVQAYSGFEKHVMRSLKERIVLKGMEDQFGEILVPTEEVVEMKEGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K T +V+GF+G + P+P++D E E I+ +VE+ +P Sbjct: 61 YPGYVLVQMEMNDDTWHLVKSTTRVLGFIGGTPDKPAPISDKEAEAILRRVESGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L ++QVEK Sbjct: 121 KTLFEAGEVVRVIDGPFADFNGVVEEVDYEKSRVKVAVLIFGRSTPVDLEFSQVEK 176 >gi|292486722|ref|YP_003529592.1| transcription antitermination protein nusG [Erwinia amylovora CFBP1430] gi|292897955|ref|YP_003537324.1| transcription antitermination protein [Erwinia amylovora ATCC 49946] gi|291197803|emb|CBJ44898.1| transcription antitermination protein [Erwinia amylovora ATCC 49946] gi|291552139|emb|CBA19176.1| Transcription antitermination protein nusG [Erwinia amylovora CFBP1430] Length = 181 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|241664554|ref|YP_002982914.1| transcription antitermination protein NusG [Ralstonia pickettii 12D] gi|240866581|gb|ACS64242.1| NusG antitermination factor [Ralstonia pickettii 12D] Length = 194 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R GL HL +I +PSE V+ + GRK +ERR FP Sbjct: 20 KRWYVVHAYSGMEKSVQRALQERIEREGLQHLFGQILVPSEEVMESKSGRKTVTERRLFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV ++ MTD+ +H +K+T KV GF+G G PSP++ SE++ IM Q++ V++P Sbjct: 80 GYVFVEMEMTDETWHLVKNTSKVTGFIGGTGNRPSPISKSEVDKIMAQIQEGVEKPRPKT 139 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|289641396|ref|ZP_06473560.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata] gi|289508732|gb|EFD29667.1| NusG antitermination factor [Frankia symbiont of Datisca glomerata] Length = 269 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+S ++ + +I +P+E V ++ G++ +++ +PGY Sbjct: 96 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVIKNGKRQLVQQKKYPGY 155 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ Sbjct: 156 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRTEEVLSILAPPAPREKKVETVRVQE 215 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 216 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 269 >gi|255067813|ref|ZP_05319668.1| transcription termination/antitermination factor NusG [Neisseria sicca ATCC 29256] gi|298370604|ref|ZP_06981919.1| transcription termination/antitermination factor NusG [Neisseria sp. oral taxon 014 str. F0314] gi|255047904|gb|EET43368.1| transcription termination/antitermination factor NusG [Neisseria sicca ATCC 29256] gi|298281214|gb|EFI22704.1| transcription termination/antitermination factor NusG [Neisseria sp. oral taxon 014 str. F0314] Length = 177 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G P+P++ E + I+ QV + V++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRSGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|148263129|ref|YP_001229835.1| NusG antitermination factor [Geobacter uraniireducens Rf4] gi|146396629|gb|ABQ25262.1| transcription antitermination protein nusG [Geobacter uraniireducens Rf4] Length = 175 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K S+ R+ GL+ EI IP E VV ++KG K S R+F Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLSERIKNLGLEDKFGEILIPCETVVELKKGEKRTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P Sbjct: 61 FPGYILVNMELDDETWHVVKETSKVTGFVG-GNNPFAIPDDEVAKITRRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VLFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174 >gi|238785545|ref|ZP_04629526.1| Transcription antitermination protein nusG [Yersinia bercovieri ATCC 43970] gi|238713530|gb|EEQ05561.1| Transcription antitermination protein nusG [Yersinia bercovieri ATCC 43970] Length = 181 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|187476522|ref|YP_784546.1| transcription antitermination protein NusG [Bordetella avium 197N] gi|115421108|emb|CAJ47592.1| transcription antitermination protein [Bordetella avium 197N] Length = 177 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I++Q+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREVEKILSQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|238918138|ref|YP_002931652.1| transcription antitermination protein NusG [Edwardsiella ictaluri 93-146] gi|238867706|gb|ACR67417.1| transcription termination/antitermination factor NusG, putative [Edwardsiella ictaluri 93-146] Length = 181 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQIGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|27364611|ref|NP_760139.1| transcription antitermination protein NusG [Vibrio vulnificus CMCP6] gi|37681348|ref|NP_935957.1| transcription antitermination protein NusG [Vibrio vulnificus YJ016] gi|320155005|ref|YP_004187384.1| transcription antitermination protein NusG [Vibrio vulnificus MO6-24/O] gi|32129818|sp|Q8DD25|NUSG_VIBVU RecName: Full=Transcription antitermination protein nusG gi|27360730|gb|AAO09666.1| transcription termination/antitermination factor NusG [Vibrio vulnificus CMCP6] gi|37200099|dbj|BAC95928.1| transcription antiterminator [Vibrio vulnificus YJ016] gi|319930317|gb|ADV85181.1| transcription antitermination protein NusG [Vibrio vulnificus MO6-24/O] Length = 182 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P++D E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|330444936|ref|ZP_08308590.1| transcription termination/antitermination factor NusG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493054|dbj|GAA03087.1| transcription termination/antitermination factor NusG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 181 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL+ VM D+ +H ++ P+V+GF+G + P+P++D E + I+N+++ A + PV Sbjct: 67 GYVLVNMVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG +++VD +KSRV V V IFGR TPVEL + QVEK Sbjct: 127 VFEPGEVVRVTDGPFADFNGTIESVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180 >gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM 10] gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar Microtus str. 91001] gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis IP 32953] gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis Antiqua] gi|108810380|ref|YP_646147.1| transcription antitermination protein NusG [Yersinia pestis Nepal516] gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis Pestoides F] gi|153949507|ref|YP_001402816.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis IP 31758] gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125] gi|162421043|ref|YP_001607191.1| transcription antitermination protein NusG [Yersinia pestis Angola] gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. F1991016] gi|165938150|ref|ZP_02226709.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. IP275] gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. E1979001] gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. B42003004] gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis YPIII] gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis PB1/+] gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92] gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A] gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis str. India 195] gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516] gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC 43380] gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35236] gi|238790611|ref|ZP_04634376.1| Transcription antitermination protein nusG [Yersinia frederiksenii ATCC 33641] gi|238794964|ref|ZP_04638561.1| Transcription antitermination protein nusG [Yersinia intermedia ATCC 29909] gi|270488911|ref|ZP_06205985.1| transcription termination/antitermination factor NusG [Yersinia pestis KIM D27] gi|294505420|ref|YP_003569482.1| transcription antitermination protein NusG [Yersinia pestis Z176003] gi|332159907|ref|YP_004296484.1| transcription antitermination protein NusG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|32129819|sp|Q8ZAP0|NUSG_YERPE RecName: Full=Transcription antitermination protein nusG gi|21957175|gb|AAM84068.1|AE013648_10 component in transcription antitermination [Yersinia pestis KIM 10] gi|45437735|gb|AAS63285.1| transcription antitermination protein [Yersinia pestis biovar Microtus str. 91001] gi|51587915|emb|CAH19518.1| transcription antitermination protein [Yersinia pseudotuberculosis IP 32953] gi|108774028|gb|ABG16547.1| transcription antitermination protein nusG [Yersinia pestis Nepal516] gi|108781528|gb|ABG15586.1| transcription antitermination protein nusG [Yersinia pestis Antiqua] gi|115349368|emb|CAL22339.1| transcription antitermination protein [Yersinia pestis CO92] gi|122087631|emb|CAL10413.1| transcription antitermination protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145212689|gb|ABP42096.1| transcription antitermination protein nusG [Yersinia pestis Pestoides F] gi|149289322|gb|EDM39401.1| transcription antitermination protein [Yersinia pestis CA88-4125] gi|152961002|gb|ABS48463.1| transcription termination/antitermination factor NusG [Yersinia pseudotuberculosis IP 31758] gi|162353858|gb|ABX87806.1| transcription termination/antitermination factor NusG [Yersinia pestis Angola] gi|165913811|gb|EDR32429.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. IP275] gi|165919670|gb|EDR37003.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. F1991016] gi|165989038|gb|EDR41339.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. E1979001] gi|166204417|gb|EDR48897.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. B42003004] gi|166957158|gb|EDR55179.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048191|gb|EDR59599.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054198|gb|EDR64023.1| transcription termination/antitermination factor NusG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749126|gb|ACA66644.1| NusG antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186696660|gb|ACC87289.1| NusG antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229682375|gb|EEO78465.1| transcription termination factor [Yersinia pestis Nepal516] gi|229686981|gb|EEO79057.1| transcription termination factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695800|gb|EEO85847.1| transcription termination factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704186|gb|EEO91197.1| transcription termination factor [Yersinia pestis Pestoides A] gi|238701515|gb|EEP94088.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35236] gi|238708982|gb|EEQ01232.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC 43380] gi|238721280|gb|EEQ12955.1| Transcription antitermination protein nusG [Yersinia frederiksenii ATCC 33641] gi|238725722|gb|EEQ17279.1| Transcription antitermination protein nusG [Yersinia intermedia ATCC 29909] gi|262367414|gb|ACY63971.1| transcription antitermination protein NusG [Yersinia pestis D182038] gi|270337415|gb|EFA48192.1| transcription termination/antitermination factor NusG [Yersinia pestis KIM D27] gi|294355879|gb|ADE66220.1| transcription antitermination protein NusG [Yersinia pestis Z176003] gi|318607543|emb|CBY29041.1| transcription antitermination protein NusG [Yersinia enterocolitica subsp. palearctica Y11] gi|320013652|gb|ADV97223.1| transcription termination factor [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325664137|gb|ADZ40781.1| transcription antitermination protein NusG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863585|emb|CBX73697.1| transcription antitermination protein nusG [Yersinia enterocolitica W22703] Length = 181 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|293394017|ref|ZP_06638321.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Serratia odorifera DSM 4582] gi|291423457|gb|EFE96682.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Serratia odorifera DSM 4582] Length = 181 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|319639537|ref|ZP_07994284.1| transcription antitermination protein nusG [Neisseria mucosa C102] gi|317399108|gb|EFV79782.1| transcription antitermination protein nusG [Neisseria mucosa C102] Length = 177 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 82/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEDYFGQILVPVEEVVDIKNGRKTISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G G P P++ + + I+ Q + V++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177 >gi|212709021|ref|ZP_03317149.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM 30120] gi|212688310|gb|EEB47838.1| hypothetical protein PROVALCAL_00053 [Providencia alcalifaciens DSM 30120] Length = 181 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|315499731|ref|YP_004088534.1| nusg antitermination factor [Asticcacaulis excentricus CB 48] gi|315417743|gb|ADU14383.1| NusG antitermination factor [Asticcacaulis excentricus CB 48] Length = 189 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 90/175 (51%), Positives = 129/175 (73%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFP Sbjct: 15 HKWYIVHAYSNFEKKVAESLREQAKAQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 74 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K +TD+ +H +K+TPKV GFLG+G P PV++ E++ I+ VE A ++P + + Sbjct: 75 GYVLVKMELTDEAFHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVEVAAEKPKTVLS 134 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F++GE++ V DGPFASF+G+V++VD++ +R+ V V IFGR TPV+L + QVEK V Sbjct: 135 FDIGEKIKVIDGPFASFDGVVESVDQDHARLKVSVSIFGRATPVDLEFGQVEKTV 189 >gi|52424260|ref|YP_087397.1| transcription antitermination protein NusG [Mannheimia succiniciproducens MBEL55E] gi|52306312|gb|AAU36812.1| NusG protein [Mannheimia succiniciproducens MBEL55E] Length = 184 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLNHMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H ++ P+V+GF+G + P P++ E + I+N+VE +P Sbjct: 68 GYVLVEMEMNDDTWHLVRSVPRVMGFIGGTPDRPLPISKREADLILNRVEENADKPRPKN 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL ++QVEK Sbjct: 128 TFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181 >gi|261364713|ref|ZP_05977596.1| transcription termination/antitermination factor NusG [Neisseria mucosa ATCC 25996] gi|288567009|gb|EFC88569.1| transcription termination/antitermination factor NusG [Neisseria mucosa ATCC 25996] Length = 177 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GRK SER+F Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEGYFGQILVPVEEVVDIKNGRKTISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G P+P++ E + I+ QV V++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGTANKPTPISQREADAILQQVRTGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNGIV V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|167629453|ref|YP_001679952.1| transcription termination/antitermination factor nusg [Heliobacterium modesticaldum Ice1] gi|167592193|gb|ABZ83941.1| transcription termination/antitermination factor nusg [Heliobacterium modesticaldum Ice1] Length = 176 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ ++ + I +P E V ++ G++ ++R+ Sbjct: 3 MEKLWYVIHTYSGYENKVKANLERRVESMNMEDKIFRILVPMEDEVEIKNGKRKVTKRKV 62 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYV+++ +MTD ++ +++TP V GF+G G P P+ SE+ HI+ + R Sbjct: 63 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGPGTKPIPLQPSEVAHILKSMGYDEARTRHD 122 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + E V V GPF F G ++++ EK ++ V V +FGR TPVEL ++QVEK+ Sbjct: 123 FALK--ENVRVISGPFQDFVGTIEDIQPEKGKLKVLVSMFGRETPVELDFSQVEKV 176 >gi|157147225|ref|YP_001454544.1| transcription antitermination protein NusG [Citrobacter koseri ATCC BAA-895] gi|261340891|ref|ZP_05968749.1| transcription termination/antitermination factor NusG [Enterobacter cancerogenus ATCC 35316] gi|283787345|ref|YP_003367210.1| transcription antitermination protein [Citrobacter rodentium ICC168] gi|296100610|ref|YP_003610756.1| transcription antitermination protein NusG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|157084430|gb|ABV14108.1| hypothetical protein CKO_03008 [Citrobacter koseri ATCC BAA-895] gi|282950799|emb|CBG90475.1| transcription antitermination protein [Citrobacter rodentium ICC168] gi|288316944|gb|EFC55882.1| transcription termination/antitermination factor NusG [Enterobacter cancerogenus ATCC 35316] gi|295055069|gb|ADF59807.1| transcription antitermination protein NusG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095132|emb|CBK84222.1| transcription antitermination protein nusG [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 181 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|206579787|ref|YP_002241081.1| transcription termination/antitermination factor NusG [Klebsiella pneumoniae 342] gi|260596081|ref|YP_003208652.1| transcription antitermination protein NusG [Cronobacter turicensis z3032] gi|288937726|ref|YP_003441785.1| NusG antitermination factor [Klebsiella variicola At-22] gi|290513234|ref|ZP_06552595.1| transcription termination/antitermination factor NusG [Klebsiella sp. 1_1_55] gi|206568845|gb|ACI10621.1| transcription termination/antitermination factor NusG [Klebsiella pneumoniae 342] gi|260215258|emb|CBA27161.1| Transcription antitermination protein nusG [Cronobacter turicensis z3032] gi|288892435|gb|ADC60753.1| NusG antitermination factor [Klebsiella variicola At-22] gi|289774331|gb|EFD82338.1| transcription termination/antitermination factor NusG [Klebsiella sp. 1_1_55] Length = 181 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|197122681|ref|YP_002134632.1| NusG antitermination factor [Anaeromyxobacter sp. K] gi|220917464|ref|YP_002492768.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|196172530|gb|ACG73503.1| NusG antitermination factor [Anaeromyxobacter sp. K] gi|219955318|gb|ACL65702.1| NusG antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 179 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLDERIRQHSLQDAFGEVLIPMEVVQEMVKGEKKTSKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117 FPGY+L+ M+ + +H +K TPKV GF+G + P V D E++ + Q+ +P Sbjct: 61 FPGYILVNMEMSLQTWHLVKGTPKVTGFVGNAKTPEQVPAVSDVEVQRLTTQISEGSLKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE G+ V V+DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK Sbjct: 121 KPKVQFEEGDSVRVTDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178 >gi|222056717|ref|YP_002539079.1| NusG antitermination factor [Geobacter sp. FRC-32] gi|221566006|gb|ACM21978.1| NusG antitermination factor [Geobacter sp. FRC-32] Length = 175 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K S+ R+ GL+ E+ IP E VV ++KG K S R+F Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLLERIKNLGLEEKFGEVLIPCETVVELKKGEKRTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D +H +K+T KV GF+G G NP + D E+ I ++E ++P Sbjct: 61 FPGYILVNMELDDDTWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITQRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F G+V++V EK ++ V V IFGR TPVEL + QVEK Sbjct: 120 VLFEVGETVRVIDGPFLNFAGVVEDVKPEKGKLRVMVSIFGRATPVELEFMQVEK 174 >gi|261254083|ref|ZP_05946656.1| transcription antitermination protein NusG [Vibrio orientalis CIP 102891] gi|323492149|ref|ZP_08097310.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG 20546] gi|260937474|gb|EEX93463.1| transcription antitermination protein NusG [Vibrio orientalis CIP 102891] gi|323313600|gb|EGA66703.1| transcription antitermination protein NusG [Vibrio brasiliensis LMG 20546] Length = 182 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V+DGPFA FNG V+ VD +KSRV V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEKL 181 >gi|323498408|ref|ZP_08103405.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM 21326] gi|323316550|gb|EGA69564.1| transcription antitermination protein NusG [Vibrio sinaloensis DSM 21326] Length = 182 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|269137529|ref|YP_003294229.1| transcription antiterminator [Edwardsiella tarda EIB202] gi|294634227|ref|ZP_06712772.1| transcription termination/antitermination factor NusG [Edwardsiella tarda ATCC 23685] gi|267983189|gb|ACY83018.1| transcription antiterminator [Edwardsiella tarda EIB202] gi|291092352|gb|EFE24913.1| transcription termination/antitermination factor NusG [Edwardsiella tarda ATCC 23685] gi|304557602|gb|ADM40266.1| Transcription antitermination protein NusG [Edwardsiella tarda FL6-60] Length = 181 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130232|gb|AAV79738.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096379|emb|CAR61984.1| transcription antitermination protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 181 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN ++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNCLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|307128974|ref|YP_003880990.1| transcription termination factor [Dickeya dadantii 3937] gi|306526503|gb|ADM96433.1| transcription termination factor [Dickeya dadantii 3937] Length = 181 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHSMEDHFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|238025919|ref|YP_002910150.1| transcription antitermination protein NusG [Burkholderia glumae BGR1] gi|237875113|gb|ACR27446.1| Transcription antitermination protein NusG [Burkholderia glumae BGR1] Length = 185 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|320540639|ref|ZP_08040289.1| transcription termination factor [Serratia symbiotica str. Tucson] gi|320029570|gb|EFW11599.1| transcription termination factor [Serratia symbiotica str. Tucson] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLYDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|90417547|ref|ZP_01225468.1| transcription antitermination protein NusG [marine gamma proteobacterium HTCC2207] gi|90330639|gb|EAS45929.1| transcription antitermination protein NusG [marine gamma proteobacterium HTCC2207] Length = 175 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EKK ++ R+ L EI +P+E VV +R G K SER FFP Sbjct: 1 MRWYVVHAYSGYEKKVSLALQDRIQLHNLQDKFGEILVPTEEVVEMRGGEKRTSERMFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ + D+ +H +K+TP+V+GF+G + P+P+TD E + I+ +V + + P Sbjct: 61 GYVLVQMELDDESWHLVKETPRVMGFIGGKADKPAPITDKEADLILQRVHDSEEAPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+ GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK Sbjct: 121 MFEPGELVRVTYGPFNDFNGTVEEVNYEKSRLRVAVSIFGRSTPVELEFTQVEK 174 >gi|297180346|gb|ADI16563.1| transcription antiterminator [uncultured gamma proteobacterium HF0010_01E20] Length = 177 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+V YS EK ++ R++ S EI +P+E VV +R G+K SER+F Sbjct: 1 MSKNWYVVHAYSGFEKNVARALQERVNLSNHQENFGEILVPTEEVVEMRGGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D+ +H +K TP+V+GF+G + P+P++ E I+++V A ++ Sbjct: 61 FPGYVLVEMELNDETWHLVKKTPRVMGFIGGKADQPAPLSTKEAAAILDRVAAGSEKATP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF FNG+V+ V+ EKSR+ V V IFGR TPVEL + QVEK Sbjct: 121 KTVFEPGEIVRVTDGPFNDFNGVVEEVNYEKSRLRVAVTIFGRSTPVELDFGQVEK 176 >gi|330430119|gb|AEC21453.1| transcription antitermination protein NusG [Pusillimonas sp. T7-7] Length = 177 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+GL+ +I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAGLETSFGQILVPSEEVVEVKGGKKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I++Q+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPAPISEREVEKILSQMEEGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFGQVEK 176 >gi|261344394|ref|ZP_05972038.1| transcription termination/antitermination factor NusG [Providencia rustigianii DSM 4541] gi|282567667|gb|EFB73202.1| transcription termination/antitermination factor NusG [Providencia rustigianii DSM 4541] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDYFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|329850796|ref|ZP_08265641.1| transcription termination/antitermination factor NusG [Asticcacaulis biprosthecum C19] gi|328841111|gb|EGF90682.1| transcription termination/antitermination factor NusG [Asticcacaulis biprosthecum C19] Length = 191 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 90/173 (52%), Positives = 127/173 (73%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK ES+ + GL+ +EI +P+E VV VR+GRK NSER+FFP Sbjct: 17 HKWYIVHAYSNFEKKVAESLRDQAKSQGLEDKFSEILVPTEEVVEVRRGRKFNSERKFFP 76 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K ++D+ YH +K+TPKV GFLG+G P PV++ E++ I+ V+AAV+RP + Sbjct: 77 GYVLVKMELSDEAYHLVKNTPKVTGFLGSGSKPMPVSEKEVQRIVGNVDAAVERPKPVLA 136 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F++GE+V ++ G FASF+G+V++ D E +R+ V V IFGR TPV+L Y+QVEK Sbjct: 137 FDIGEKVKITSGHFASFDGVVESADPEHARLRVSVSIFGRATPVDLEYSQVEK 189 >gi|237727884|ref|ZP_04558365.1| transcription antitermination protein NusG [Citrobacter sp. 30_2] gi|226910441|gb|EEH96359.1| transcription antitermination protein NusG [Citrobacter sp. 30_2] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|198282625|ref|YP_002218946.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666542|ref|YP_002424817.1| transcription termination/antitermination factor NusG [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247146|gb|ACH82739.1| NusG antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518755|gb|ACK79341.1| transcription termination/antitermination factor NusG [Acidithiobacillus ferrooxidans ATCC 23270] Length = 177 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 114/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V +S EKK I R +R GL EI +P E VV +R G+K +S+R F Sbjct: 1 MSMRWYVVHAFSGFEKKVQGEIRERANREGLADKFGEILVPVEEVVEMRNGQKTSSQRMF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K TP+V GF+G P P++D+E IM++++ V++P Sbjct: 61 YPGYVLVQMEMDDVTWHLVKSTPRVTGFVGGSVGRPHPLSDAETNAIMDRIKEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEK Sbjct: 121 KFSFDAGEQVRVVDGPFKDFNGVVEEVNFEKSKLRVSVTIFGRSTPVELDFGQVEK 176 >gi|94500508|ref|ZP_01307039.1| transcription antitermination protein NusG [Oceanobacter sp. RED65] gi|94427298|gb|EAT12277.1| transcription antitermination protein NusG [Oceanobacter sp. RED65] Length = 179 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK+ + S+ ++ +G+ E+ +P+E V+ +R G+K SER+F Sbjct: 1 MAMRWYVVHAYSGYEKRVMNSLKEQIEINGMQDCFGEVLVPTEEVIEMRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQ-RPV 118 +PGYVL++ M D +H +K+TP+V+GF+G + P+P+T E + I+ +V+ + +P Sbjct: 61 YPGYVLVEMDMNDATWHLVKETPRVLGFIGGTADKPAPITKREADAILQRVKEGEEGQPT 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE + V DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 121 HKTIYEPGEMIRVIDGPFADFNGVVETVDYEKSRLKVAVTIFGRSTPVELEFGQVEK 177 >gi|153005087|ref|YP_001379412.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|152028660|gb|ABS26428.1| NusG antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 179 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K +S+ R+ + L E+ IP E V + KG K S+R+F Sbjct: 1 MAKKWYVVHTYSGFENKVKKSLEERVRQHSLQEQFGEVLIPMEVVQEMVKGEKKTSKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---DSEIEHIMNQVEAAVQRP 117 FPGY+L+ MT +H +K TPKV GF+G + P+ V D E++ + Q+ +P Sbjct: 61 FPGYILVNMEMTLDTWHLVKGTPKVTGFVGNAKTPNEVPAVSDVEVQRLTTQISEGSLKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE G++V V DGPF++FNG V+ V +K ++ V V IFGR TPVEL + QVEK Sbjct: 121 KPKVQFEEGDQVRVIDGPFSNFNGTVEEVKPDKGKLRVLVSIFGRATPVELDFMQVEK 178 >gi|292492409|ref|YP_003527848.1| transcription termination/antitermination factor NusG [Nitrosococcus halophilus Nc4] gi|291581004|gb|ADE15461.1| transcription termination/antitermination factor NusG [Nitrosococcus halophilus Nc4] Length = 177 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSLEERIRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M+D+ +H ++D P+V+GF+G + P+P+TD+E E I+ +V ++P Sbjct: 61 FPGYVLVQMEMSDETWHLVRDVPRVLGFIGGTSDKPAPITDAEAEKILERVREGAEQPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK Sbjct: 121 KILFEPGEMVRVVEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176 >gi|238756065|ref|ZP_04617388.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC 29473] gi|238705732|gb|EEP98126.1| Transcription antitermination protein nusG [Yersinia ruckeri ATCC 29473] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLQDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|238765324|ref|ZP_04626250.1| Transcription antitermination protein nusG [Yersinia kristensenii ATCC 33638] gi|238696451|gb|EEP89242.1| Transcription antitermination protein nusG [Yersinia kristensenii ATCC 33638] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLNNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|186477601|ref|YP_001859071.1| transcription antitermination protein NusG [Burkholderia phymatum STM815] gi|184194060|gb|ACC72025.1| NusG antitermination factor [Burkholderia phymatum STM815] Length = 185 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >gi|172087775|ref|YP_205804.2| transcription termination factor NusG [Vibrio fischeri ES114] gi|197335330|ref|YP_002157209.1| transcription termination/antitermination factor NusG [Vibrio fischeri MJ11] gi|171902362|gb|AAW86916.2| transcription termination factor NusG [Vibrio fischeri ES114] gi|197316820|gb|ACH66267.1| transcription termination/antitermination factor NusG [Vibrio fischeri MJ11] Length = 181 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVSQSLREHIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEQASEAPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFSQVEK 180 >gi|53720834|ref|YP_109820.1| transcription antitermination protein NusG [Burkholderia pseudomallei K96243] gi|76809996|ref|YP_335155.1| transcription antitermination protein NusG [Burkholderia pseudomallei 1710b] gi|83721510|ref|YP_443585.1| transcription antitermination protein NusG [Burkholderia thailandensis E264] gi|126441577|ref|YP_001060763.1| transcription antitermination protein NusG [Burkholderia pseudomallei 668] gi|126454654|ref|YP_001068051.1| transcription antitermination protein NusG [Burkholderia pseudomallei 1106a] gi|167564429|ref|ZP_02357345.1| transcription antitermination protein NusG [Burkholderia oklahomensis EO147] gi|167571575|ref|ZP_02364449.1| transcription antitermination protein NusG [Burkholderia oklahomensis C6786] gi|167582635|ref|ZP_02375509.1| transcription antitermination protein NusG [Burkholderia thailandensis TXDOH] gi|167620749|ref|ZP_02389380.1| transcription antitermination protein NusG [Burkholderia thailandensis Bt4] gi|167721589|ref|ZP_02404825.1| transcription antitermination protein NusG [Burkholderia pseudomallei DM98] gi|167740563|ref|ZP_02413337.1| transcription antitermination protein NusG [Burkholderia pseudomallei 14] gi|167817768|ref|ZP_02449448.1| transcription antitermination protein NusG [Burkholderia pseudomallei 91] gi|167826165|ref|ZP_02457636.1| transcription antitermination protein NusG [Burkholderia pseudomallei 9] gi|167838224|ref|ZP_02465083.1| transcription antitermination protein NusG [Burkholderia thailandensis MSMB43] gi|167847677|ref|ZP_02473185.1| transcription antitermination protein NusG [Burkholderia pseudomallei B7210] gi|167896249|ref|ZP_02483651.1| transcription antitermination protein NusG [Burkholderia pseudomallei 7894] gi|167904631|ref|ZP_02491836.1| transcription antitermination protein NusG [Burkholderia pseudomallei NCTC 13177] gi|167912896|ref|ZP_02499987.1| transcription antitermination protein NusG [Burkholderia pseudomallei 112] gi|167920856|ref|ZP_02507947.1| transcription antitermination protein NusG [Burkholderia pseudomallei BCC215] gi|217424755|ref|ZP_03456252.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 576] gi|237814161|ref|YP_002898612.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei MSHR346] gi|242316083|ref|ZP_04815099.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1106b] gi|254198425|ref|ZP_04904846.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei S13] gi|254257944|ref|ZP_04948998.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1710a] gi|257137630|ref|ZP_05585892.1| transcription antitermination protein NusG [Burkholderia thailandensis E264] gi|52211248|emb|CAH37237.1| transcription antitermination protein NusG [Burkholderia pseudomallei K96243] gi|76579449|gb|ABA48924.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1710b] gi|83655335|gb|ABC39398.1| transcription termination/antitermination factor NusG [Burkholderia thailandensis E264] gi|126221070|gb|ABN84576.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 668] gi|126228296|gb|ABN91836.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1106a] gi|169655165|gb|EDS87858.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei S13] gi|217392211|gb|EEC32236.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 576] gi|237506347|gb|ACQ98665.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei MSHR346] gi|242139322|gb|EES25724.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1106b] gi|254216633|gb|EET06017.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 1710a] Length = 185 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|270265419|ref|ZP_06193678.1| transcription antitermination protein NusG [Serratia odorifera 4Rx13] gi|270040612|gb|EFA13717.1| transcription antitermination protein NusG [Serratia odorifera 4Rx13] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|260774684|ref|ZP_05883589.1| transcription antitermination protein NusG [Vibrio coralliilyticus ATCC BAA-450] gi|260609403|gb|EEX35552.1| transcription antitermination protein NusG [Vibrio coralliilyticus ATCC BAA-450] Length = 182 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius str. 'morsitans'] gi|84778627|dbj|BAE73404.1| transcription antitermination protein [Sodalis glossinidius str. 'morsitans'] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium profundum SS9] gi|46914946|emb|CAG21721.1| putative transcription antiterminator protein [Photobacterium profundum SS9] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H ++ P+V+GF+G + P+P++D E + I+N+++ A + PV Sbjct: 67 GYVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQQASESPVHKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V++VD +KSRV V V IFGR TPVEL + QVEK Sbjct: 127 VFEPGEVVRVTDGPFADFNGVVEHVDYDKSRVKVSVSIFGRATPVELEFGQVEK 180 >gi|28899701|ref|NP_799306.1| transcription antitermination protein NusG [Vibrio parahaemolyticus RIMD 2210633] gi|260878169|ref|ZP_05890524.1| transcription termination/antitermination factor NusG [Vibrio parahaemolyticus AN-5034] gi|262392942|ref|YP_003284796.1| transcription antitermination protein NusG [Vibrio sp. Ex25] gi|269965855|ref|ZP_06179949.1| transcription antitermination protein NusG [Vibrio alginolyticus 40B] gi|32129809|sp|Q87KP9|NUSG_VIBPA RecName: Full=Transcription antitermination protein nusG gi|28807953|dbj|BAC61190.1| transcription antitermination protein NusG [Vibrio parahaemolyticus RIMD 2210633] gi|262336536|gb|ACY50331.1| transcription antitermination protein NusG [Vibrio sp. Ex25] gi|269829519|gb|EEZ83759.1| transcription antitermination protein NusG [Vibrio alginolyticus 40B] gi|308090221|gb|EFO39916.1| transcription termination/antitermination factor NusG [Vibrio parahaemolyticus AN-5034] gi|328471078|gb|EGF41984.1| transcription antitermination protein NusG [Vibrio parahaemolyticus 10329] Length = 182 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|53723867|ref|YP_104179.1| transcription antitermination protein NusG [Burkholderia mallei ATCC 23344] gi|121599293|ref|YP_994470.1| transcription antitermination protein NusG [Burkholderia mallei SAVP1] gi|124385674|ref|YP_001027880.1| transcription antitermination protein NusG [Burkholderia mallei NCTC 10229] gi|126449300|ref|YP_001082976.1| transcription antitermination protein NusG [Burkholderia mallei NCTC 10247] gi|238563289|ref|ZP_00439115.2| transcription termination/antitermination factor NusG [Burkholderia mallei GB8 horse 4] gi|254175266|ref|ZP_04881927.1| transcription termination/antitermination factor NusG [Burkholderia mallei ATCC 10399] gi|254357132|ref|ZP_04973406.1| transcription termination/antitermination factor NusG [Burkholderia mallei 2002721280] gi|52427290|gb|AAU47883.1| transcription antitermination protein NusG [Burkholderia mallei ATCC 23344] gi|121228103|gb|ABM50621.1| transcription termination/antitermination factor NusG [Burkholderia mallei SAVP1] gi|124293694|gb|ABN02963.1| transcription termination/antitermination factor NusG [Burkholderia mallei NCTC 10229] gi|126242170|gb|ABO05263.1| transcription termination/antitermination factor NusG [Burkholderia mallei NCTC 10247] gi|148026196|gb|EDK84281.1| transcription termination/antitermination factor NusG [Burkholderia mallei 2002721280] gi|160696311|gb|EDP86281.1| transcription termination/antitermination factor NusG [Burkholderia mallei ATCC 10399] gi|238520997|gb|EEP84452.1| transcription termination/antitermination factor NusG [Burkholderia mallei GB8 horse 4] Length = 185 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|312170787|emb|CBX79048.1| Transcription antitermination protein nusG [Erwinia amylovora ATCC BAA-2158] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGMVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|291615763|ref|YP_003518505.1| NusG [Pantoea ananatis LMG 20103] gi|304399298|ref|ZP_07381163.1| NusG antitermination factor [Pantoea sp. aB] gi|291150793|gb|ADD75377.1| NusG [Pantoea ananatis LMG 20103] gi|304353154|gb|EFM17536.1| NusG antitermination factor [Pantoea sp. aB] gi|327396029|dbj|BAK13451.1| transcription antitermination protein NusG [Pantoea ananatis AJ13355] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180 >gi|300714842|ref|YP_003739645.1| Transcription antitermination protein [Erwinia billingiae Eb661] gi|299060678|emb|CAX57785.1| Transcription antitermination protein [Erwinia billingiae Eb661] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L ++ +P+E VV +R G++ SER+FFP Sbjct: 7 MRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGDVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMLMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|33594732|ref|NP_882375.1| transcription antitermination protein NusG [Bordetella parapertussis 12822] gi|33564808|emb|CAE39750.1| transcription antitermination protein NusG [Bordetella parapertussis] Length = 177 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I+NQ+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREVEKILNQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GP A FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|268592956|ref|ZP_06127177.1| transcription termination/antitermination factor NusG [Providencia rettgeri DSM 1131] gi|291311427|gb|EFE51880.1| transcription termination/antitermination factor NusG [Providencia rettgeri DSM 1131] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFEGRVAQSLREHIKLHAMEDSFGEVMVPTEEVVEIRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDDSWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VS+GPFA FNG+V+ +D EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVSEGPFADFNGVVEEIDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|111220530|ref|YP_711324.1| transcription antitermination protein nusG [Frankia alni ACN14a] gi|111148062|emb|CAJ59729.1| Transcription antitermination protein nusG [Frankia alni ACN14a] Length = 291 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ +++ +PGY Sbjct: 118 WYVVHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVQQKKYPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV--SSVF 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ ++ Sbjct: 178 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVLSILAPAAPKEKKVETVRVQE 237 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 238 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 291 >gi|209520977|ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp. H160] gi|209498579|gb|EDZ98698.1| NusG antitermination factor [Burkholderia sp. H160] Length = 185 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ + +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >gi|94971707|ref|YP_593755.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] gi|94553757|gb|ABF43681.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] Length = 199 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 118/175 (67%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYI+ YS E+K ES+ R+ GL+ + + IP+E V VR G+K SER F+P Sbjct: 24 MKWYIIHSYSGFERKVKESLESRIHAFGLEGKIGRVLIPTESVTEVRGGKKYTSERMFYP 83 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ M D V+H +K TP+V GF+GTG+ P+P+++ E++ I+ +V + ++P V Sbjct: 84 GYVLVEMDMDDNVWHVVKSTPRVTGFVGTGQQPTPLSEEEVQQIVYRVADSREKPKLKVK 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +E E V +S+GPFA+F G+V V+E+K + V V IFGR TPVEL + QVEK++ Sbjct: 144 YEKNETVRISEGPFATFQGVVDEVNEDKETLKVMVTIFGRSTPVELEFGQVEKVL 198 >gi|330815227|ref|YP_004358932.1| Transcription antitermination protein NusG [Burkholderia gladioli BSR3] gi|327367620|gb|AEA58976.1| Transcription antitermination protein NusG [Burkholderia gladioli BSR3] Length = 185 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV VR G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVRGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|157368521|ref|YP_001476510.1| transcription antitermination protein NusG [Serratia proteamaculans 568] gi|157320285|gb|ABV39382.1| NusG antitermination factor [Serratia proteamaculans 568] Length = 181 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREYIKLHDMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|325982737|ref|YP_004295139.1| NusG antitermination factor [Nitrosomonas sp. AL212] gi|325532256|gb|ADZ26977.1| NusG antitermination factor [Nitrosomonas sp. AL212] Length = 177 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+V YS EK ++ R+ R+G+ +I +P E V+ ++ G+K SER+F Sbjct: 1 MSMKWYVVHAYSGYEKSVQRALRDRIDRAGMQDKFGQILVPVEEVIEMKSGQKNISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M+D +H +K+ KV GF+G P+P++ E+++I++Q++ V++P Sbjct: 61 FPGYVLVEMEMSDDTWHLVKNIDKVTGFVGGSAMKPTPISQKEVDNILHQIQEGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE + V DGPF F+G V++V+ +KS++ V V IFGR TPVEL +NQVEK Sbjct: 121 KILFEIGEAIRVKDGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFNQVEK 176 >gi|312882839|ref|ZP_07742572.1| transcription antitermination protein NusG [Vibrio caribbenthicus ATCC BAA-2122] gi|309369531|gb|EFP97050.1| transcription antitermination protein NusG [Vibrio caribbenthicus ATCC BAA-2122] Length = 182 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEESFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|294668287|ref|ZP_06733391.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309741|gb|EFE50984.1| hypothetical protein NEIELOOT_00200 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 177 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK +++ R+ R G+ +I +P+E VV ++ GR+ SER+F Sbjct: 1 MSKKWYVVQAYSGFEKNVQKALKDRIEREGMGTSFGKILVPTEEVVDIKNGRRTVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M+D +H ++ TP+V GF+G P P++ E++ I+ Q++ +P Sbjct: 61 FPGYVLVEMEMSDDSWHLVRSTPRVSGFVGGEANRPLPISQREVDSILAQIQIGGDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVG++V V++GPFA FNGIV V+ E+S++ V V IFGR TPVEL + QVEK Sbjct: 121 RVEFEVGQQVRVTEGPFADFNGIVSEVNYERSKLRVSVQIFGRETPVELDFGQVEK 176 >gi|329296854|ref|ZP_08254190.1| transcription antitermination protein NusG [Plautia stali symbiont] Length = 181 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEARVAKSLQEHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|257095052|ref|YP_003168693.1| transcription antitermination protein NusG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047576|gb|ACV36764.1| NusG antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 177 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK ++ R+ R G++ I +P E VV ++ G+K SER+F Sbjct: 1 MSMRWYVVHAYSGFEKSVQRALLERIQRQGMEESFGRILVPVEEVVELKMGQKSISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D +H +K TPKV GF+G PSP+++ E+ IM Q++ V +P Sbjct: 61 FPGYVLVEMEMNDDSWHLVKSTPKVTGFVGGTANKPSPISEKEVAKIMQQMQEGVDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V DGPF F+G V+ V+ EK+R+ V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEPGEVVRVKDGPFTDFHGAVEQVNYEKNRLRVSVTIFGRPTPVELEFAQVEK 176 >gi|167587784|ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubonensis Bu] gi|254253528|ref|ZP_04946846.1| transcription antitermination protein NusG [Burkholderia dolosa AUO158] gi|124896137|gb|EAY70017.1| transcription antitermination protein NusG [Burkholderia dolosa AUO158] gi|325529724|gb|EGD06581.1| transcription antitermination protein NusG [Burkholderia sp. TJI49] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G P+P++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|78064911|ref|YP_367680.1| transcription antitermination protein NusG [Burkholderia sp. 383] gi|107024316|ref|YP_622643.1| transcription antitermination protein NusG [Burkholderia cenocepacia AU 1054] gi|115350309|ref|YP_772148.1| transcription antitermination protein NusG [Burkholderia ambifaria AMMD] gi|116688359|ref|YP_833982.1| transcription antitermination protein NusG [Burkholderia cenocepacia HI2424] gi|134294430|ref|YP_001118165.1| transcription antitermination protein NusG [Burkholderia vietnamiensis G4] gi|161523416|ref|YP_001578428.1| transcription antitermination protein NusG [Burkholderia multivorans ATCC 17616] gi|170701415|ref|ZP_02892373.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10] gi|170731669|ref|YP_001763616.1| transcription antitermination protein NusG [Burkholderia cenocepacia MC0-3] gi|171319353|ref|ZP_02908463.1| NusG antitermination factor [Burkholderia ambifaria MEX-5] gi|172059328|ref|YP_001806980.1| transcription antitermination protein NusG [Burkholderia ambifaria MC40-6] gi|189351811|ref|YP_001947439.1| transcription antitermination protein NusG [Burkholderia multivorans ATCC 17616] gi|206558628|ref|YP_002229388.1| transcription antitermination protein NusG [Burkholderia cenocepacia J2315] gi|221201552|ref|ZP_03574590.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD2M] gi|221207373|ref|ZP_03580383.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD2] gi|221213511|ref|ZP_03586486.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD1] gi|254246607|ref|ZP_04939928.1| transcription antitermination protein NusG [Burkholderia cenocepacia PC184] gi|77965656|gb|ABB07036.1| transcription antitermination protein nusG [Burkholderia sp. 383] gi|105894505|gb|ABF77670.1| transcription antitermination protein nusG [Burkholderia cenocepacia AU 1054] gi|115280297|gb|ABI85814.1| transcription antitermination protein nusG [Burkholderia ambifaria AMMD] gi|116646448|gb|ABK07089.1| transcription antitermination protein nusG [Burkholderia cenocepacia HI2424] gi|124871383|gb|EAY63099.1| transcription antitermination protein NusG [Burkholderia cenocepacia PC184] gi|134137587|gb|ABO53330.1| transcription antitermination protein nusG [Burkholderia vietnamiensis G4] gi|160340845|gb|ABX13931.1| NusG antitermination factor [Burkholderia multivorans ATCC 17616] gi|169814911|gb|ACA89494.1| NusG antitermination factor [Burkholderia cenocepacia MC0-3] gi|170133667|gb|EDT02037.1| NusG antitermination factor [Burkholderia ambifaria IOP40-10] gi|171095424|gb|EDT40396.1| NusG antitermination factor [Burkholderia ambifaria MEX-5] gi|171991845|gb|ACB62764.1| NusG antitermination factor [Burkholderia ambifaria MC40-6] gi|189335833|dbj|BAG44903.1| transcriptional antiterminator [Burkholderia multivorans ATCC 17616] gi|198034665|emb|CAR50532.1| transcription antitermination protein NusG [Burkholderia cenocepacia J2315] gi|221166963|gb|EED99434.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD1] gi|221172961|gb|EEE05398.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD2] gi|221178368|gb|EEE10777.1| transcription termination/antitermination factor NusG [Burkholderia multivorans CGD2M] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G P+P++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRSTPVELEFGQVEKV 185 >gi|312795756|ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] gi|312167531|emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV ++ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHKSVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >gi|308188903|ref|YP_003933034.1| Transcription antitermination protein nusG [Pantoea vagans C9-1] gi|308059413|gb|ADO11585.1| Transcription antitermination protein nusG [Pantoea vagans C9-1] Length = 181 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFGQVEK 180 >gi|315125336|ref|YP_004067339.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913] gi|315013849|gb|ADT67187.1| transcription antitermination factor [Pseudoalteromonas sp. SM9913] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 77/172 (44%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S EK+ +++ + GL+ E+ +P+E VV +R G+K SER+FFPG Sbjct: 11 RWYVVQAFSGYEKRVAQTLLEHIKIKGLEDSFGEVLVPTEEVVEMRAGQKRKSERKFFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ M D +H + T +V+GF+G + P+P++ E + I+N+++ + P + Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182 >gi|261866778|ref|YP_003254700.1| transcription termination/antitermination factor NusG [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391591|ref|ZP_06635925.1| transcription termination/antitermination factor NusG [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412110|gb|ACX81481.1| transcription termination/antitermination factor NusG [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952125|gb|EFE02244.1| transcription termination/antitermination factor NusG [Aggregatibacter actinomycetemcomitans D7S-1] Length = 183 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHNMEDQFGEVLVPTEEVVENVAGKRRKSERKYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H ++ P+V+GF+G + P+P++ E + I+N++E + +P Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISSREADIILNRLEQSNDKPKPRT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPF FNG V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 181 >gi|297172380|gb|ADI23355.1| transcription antiterminator [uncultured Oceanospirillales bacterium HF0770_27O18] gi|297181153|gb|ADI17350.1| transcription antiterminator [uncultured Oceanospirillales bacterium HF0070_21F08] Length = 180 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 4/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK S+ R+ + ++ L EI +P+E VV +R G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKHVKRSLEERIKLNSMEELFGEILVPTEEVVEMRAGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR 116 FPGYVL+ M D +H +K+TPKV+GF+G SP+T E + I+ +++ AV++ Sbjct: 61 FPGYVLVHMEMNDDSWHMVKETPKVMGFIGEDPKNPGRVSPITQKEADAILRRMDDAVEK 120 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P FE GE V V+DGPFA FNG+V+ V+ EKSR+HV V+IFGR TPVEL + QVEK Sbjct: 121 PKPKTLFEAGEVVRVTDGPFADFNGVVEEVNYEKSRLHVAVLIFGRSTPVELEFGQVEK 179 >gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Actinosynnema mirum DSM 43827] gi|255924927|gb|ACU40438.1| NusG antitermination factor [Actinosynnema mirum DSM 43827] Length = 266 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY Sbjct: 84 WYVVHSYAGYENKVKTNLETRIQTLDMEDYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGY 143 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-----------NQVEAA 113 +L++ + D + +++TP V GF+G PSP+T E+ + + Sbjct: 144 ILVRMELNDGSWSAVRNTPGVTGFVGATSKPSPLTVDEVLKFLLPQGKQEPAAGKKAATT 203 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+++QV Sbjct: 204 PVKSTVEVDFEVGESVTVMDGPFATLPATISEVNADGQKLKVLVSIFGRETPVELSFSQV 263 Query: 174 EKI 176 KI Sbjct: 264 SKI 266 >gi|78221834|ref|YP_383581.1| transcription antitermination protein nusG [Geobacter metallireducens GS-15] gi|78193089|gb|ABB30856.1| transcription antitermination protein nusG [Geobacter metallireducens GS-15] Length = 175 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F Sbjct: 1 MAKKWYGVHTYSGFENKVRLSLSERIKNLGLEESFGEILIPSETVVELKKGEKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ ++D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P Sbjct: 61 FPGYILVNMELSDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VQFEVGETVRVVDGPFLNFTGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174 >gi|291613224|ref|YP_003523381.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291583336|gb|ADE10994.1| NusG antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 177 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK ++ R++R G++ L +I +P E VV ++ G+K SER+F Sbjct: 1 MAKRWYVVHTYSQFEKSVQRALLERIAREGMEDLFGQILVPVEEVVELKSGQKNISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD+ +H +K+TPKV GFLG P+P++ E+++IM Q++A V++P Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMKPTPISQKEVDNIMQQMQAGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V +GPF F+G+V++V+ +KS++ V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEVGEAVRVKEGPFTDFHGMVEDVNYDKSKLRVAVTIFGRSTPVELNFGQVEK 176 >gi|146309859|ref|YP_001174933.1| transcription antitermination protein NusG [Enterobacter sp. 638] gi|145316735|gb|ABP58882.1| transcription antitermination protein nusG [Enterobacter sp. 638] Length = 181 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMDDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V++VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVSDGPFADFNGVVEDVDYEKSRLTVSVSIFGRATPVELDFAQVEK 180 >gi|82701887|ref|YP_411453.1| transcription antitermination protein NusG [Nitrosospira multiformis ATCC 25196] gi|82409952|gb|ABB74061.1| transcription antitermination protein nusG [Nitrosospira multiformis ATCC 25196] Length = 177 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 123/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS EK ++ R+SR+G+ +I +P E V+ ++ G+K SER+F Sbjct: 1 MEKKWYVVHAYSGFEKSVQRALKERISRAGMLDKFGQILVPVEEVIEMKAGQKNLSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD+ +H +K+TPKV GF+G NP+P+++ E+++I++Q++ V++P Sbjct: 61 FPGYVLVEMEMTDETWHLVKNTPKVTGFIGGTAMNPTPISEKEVQNILHQIQEGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK Sbjct: 121 KILFETGEAVRVKEGPFTDFHGNVEDVNYDKSKLRVSVSIFGRPTPVELDFSQVEK 176 >gi|114778898|ref|ZP_01453695.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1] gi|114550867|gb|EAU53433.1| Transcription antiterminator [Mariprofundus ferrooxydans PV-1] Length = 176 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 118/175 (67%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQVYSN E K + R+GL +I +P E VV +++G+KV S+R+F Sbjct: 1 MAMRWYVVQVYSNFEDKVEHMLRENAERAGLADKFGQILVPREEVVELKEGQKVTSQRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L++ M D +H +KDT +V GFLG NP P+ E++ ++ Q+E ++RP Sbjct: 61 FPGYILVEMDMNDDTWHVVKDTRQVSGFLGADNNPKPMPQREVDALIRQIEEGIERPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F++GE V V DGPFASFNG+V+ V E+K+++ V V IFGR TPVEL Y QVEK Sbjct: 121 VMFDIGEAVRVIDGPFASFNGVVEEVMEDKAKLKVSVSIFGRPTPVELDYIQVEK 175 >gi|315635152|ref|ZP_07890430.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Aggregatibacter segnis ATCC 33393] gi|315476114|gb|EFU66868.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Aggregatibacter segnis ATCC 33393] Length = 183 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHNMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H ++ P+V+GF+G + P+P+++ E + I+N++E +P Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK Sbjct: 128 TFQPGEEVRVTEGPFMDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181 >gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium atrosepticum SCRI1043] gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261819561|ref|YP_003257667.1| transcription antitermination protein NusG [Pectobacterium wasabiae WPP163] gi|49609704|emb|CAG73137.1| transcription antitermination protein [Pectobacterium atrosepticum SCRI1043] gi|251753184|gb|ACT11260.1| NusG antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261603574|gb|ACX86060.1| NusG antitermination factor [Pectobacterium wasabiae WPP163] Length = 181 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFAQVEK 180 >gi|317494918|ref|ZP_07953328.1| transcription termination/antitermination factor NusG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917106|gb|EFV38455.1| transcription termination/antitermination factor NusG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 181 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMEDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V VSDGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 MFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >gi|288917215|ref|ZP_06411584.1| NusG antitermination factor [Frankia sp. EUN1f] gi|288351406|gb|EFC85614.1| NusG antitermination factor [Frankia sp. EUN1f] Length = 266 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+S ++ + +I +P+E V V+ G++ ++ +PGY Sbjct: 93 WYVVHSYAGYENKVKANLETRISSLNMEDYIFQIEVPTEEVPVVKNGKRQLVLQKKYPGY 152 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--F 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ V ++ + Sbjct: 153 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNRPSPLRREEVVAILAPVAPKEKKVETVKAQE 212 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 213 FEVGESVTVMDGPFATLPATISEINLDAQRLKVLVSIFGRETPVELQFNQVAKI 266 >gi|256371203|ref|YP_003109027.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256007787|gb|ACU53354.1| NusG antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 243 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 4/175 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E + +++ R+ GL+ + E+ IP E V ++ GR+V +R+ FPGY Sbjct: 68 WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++A M D+V+ I++TP + F+G+G P P++ E+E + + RP Sbjct: 128 VLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRST 187 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE+GE V V +GP A F G V V+ ++ ++ V IFGR TPVEL + QV K Sbjct: 188 QEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242 >gi|225076428|ref|ZP_03719627.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens NRL30031/H210] gi|241760434|ref|ZP_04758528.1| transcription termination/antitermination factor NusG [Neisseria flavescens SK114] gi|261381381|ref|ZP_05985954.1| transcription termination/antitermination factor NusG [Neisseria subflava NJ9703] gi|224952228|gb|EEG33437.1| hypothetical protein NEIFLAOT_01474 [Neisseria flavescens NRL30031/H210] gi|241319103|gb|EER55596.1| transcription termination/antitermination factor NusG [Neisseria flavescens SK114] gi|284795628|gb|EFC50975.1| transcription termination/antitermination factor NusG [Neisseria subflava NJ9703] Length = 177 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 82/177 (46%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+VQ YS EK +++ R++R ++ +I +P E VV ++ GRK SER+F Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIARENMEEYFGQILVPVEEVVDIKNGRKTISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G G P P++ + + I+ Q + V++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVNGFVGGSGNRPIPISQKDADAILQQAKTGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNGIV V+ E++R+ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGIVDEVNYERNRLRVSVQIFGRETPVELEFGQVEKI 177 >gi|148657431|ref|YP_001277636.1| NusG antitermination factor [Roseiflexus sp. RS-1] gi|148569541|gb|ABQ91686.1| transcription antitermination protein nusG [Roseiflexus sp. RS-1] Length = 194 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FPG Sbjct: 22 RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ M D ++ +++TP V F+G G P+P+ +SE++ I+ Q+E + P V + Sbjct: 82 YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEESEVKAILRQMEQ--EAPKVKVSY 139 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +VG+ V ++DGPF F G+V +D E+ RV V V FGR PVEL + QV ++V Sbjct: 140 QVGQAVKITDGPFTDFEGVVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193 >gi|295677945|ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp. CCGE1002] gi|295437788|gb|ADG16958.1| NusG antitermination factor [Burkholderia sp. CCGE1002] Length = 185 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >gi|126090327|ref|YP_001041770.1| NusG antitermination factor [Shewanella baltica OS155] gi|152998737|ref|YP_001364418.1| NusG antitermination factor [Shewanella baltica OS185] gi|160873314|ref|YP_001552630.1| NusG antitermination factor [Shewanella baltica OS195] gi|217975213|ref|YP_002359964.1| NusG antitermination factor [Shewanella baltica OS223] gi|304412753|ref|ZP_07394355.1| NusG antitermination factor [Shewanella baltica OS183] gi|307307417|ref|ZP_07587152.1| NusG antitermination factor [Shewanella baltica BA175] gi|125999947|gb|ABN64015.1| transcription antitermination protein nusG [Shewanella baltica OS155] gi|151363355|gb|ABS06355.1| NusG antitermination factor [Shewanella baltica OS185] gi|160858836|gb|ABX47370.1| NusG antitermination factor [Shewanella baltica OS195] gi|217500348|gb|ACK48541.1| NusG antitermination factor [Shewanella baltica OS223] gi|304348833|gb|EFM13249.1| NusG antitermination factor [Shewanella baltica OS183] gi|306910205|gb|EFN40638.1| NusG antitermination factor [Shewanella baltica BA175] gi|315265541|gb|ADT92394.1| NusG antitermination factor [Shewanella baltica OS678] Length = 183 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEEYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ P Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRT 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK Sbjct: 129 IFEPGELVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182 >gi|127511080|ref|YP_001092277.1| NusG antitermination factor [Shewanella loihica PV-4] gi|126636375|gb|ABO22018.1| transcription antitermination protein nusG [Shewanella loihica PV-4] Length = 180 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++H E+ +P+E VV +R G++ SER+FFP Sbjct: 6 KRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSERKFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ +++ + P V Sbjct: 66 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTESPTHRV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK Sbjct: 126 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 179 >gi|39997959|ref|NP_953910.1| transcription antitermination protein NusG [Geobacter sulfurreducens PCA] gi|39984904|gb|AAR36260.1| transcription antitermination protein NusG [Geobacter sulfurreducens PCA] gi|298506900|gb|ADI85623.1| transcription antitermination protein NusG [Geobacter sulfurreducens KN400] Length = 175 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS E K S+ R+ GL+ EI IPSE VV ++KG K S R+F Sbjct: 1 MSKKWYGVHTYSGFENKVRLSLQERVKNLGLEEFFGEILIPSETVVELKKGEKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D+ +H +K+T KV GF+G G NP + D E+ I ++E ++P Sbjct: 61 FPGYILVNMELNDETWHVVKETSKVTGFVG-GNNPFAIPDEEVAKITRRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F G+V++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VEFEVGETVRVVDGPFLNFAGVVEDVKPDKGKLRVMVSIFGRATPVELEFMQVEK 174 >gi|319778783|ref|YP_004129696.1| Transcription antitermination protein NusG [Taylorella equigenitalis MCE9] gi|317108807|gb|ADU91553.1| Transcription antitermination protein NusG [Taylorella equigenitalis MCE9] Length = 180 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V V+S EKK ++ R+ ++G+ I +P+E +V R ++ S+R+ Sbjct: 1 MSLRWYVVHVFSGMEKKVYAALQERIEQAGMQEYFGRILVPTEEIVETRGSKRSVSQRKI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV 118 FPGY+L++ +H +K T +V GFLG G PSP+ E++ ++ +E +P Sbjct: 61 FPGYILVEMEFNPDTWHLVKSTNRVTGFLGGGSNSKPSPIPQKEVDSLLANLEEGGGKPR 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE + + DGPFA FNG+V V+ EK+RV V V+IFGR TPVEL ++QVEK Sbjct: 121 PKVLFEVGETLRIKDGPFADFNGVVDQVNYEKNRVTVIVMIFGRSTPVELDFSQVEK 177 >gi|152980025|ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp. Marseille] gi|151280102|gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille] Length = 199 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R +R+G++ +I +P+E V+ V+ G K SERRFFP Sbjct: 25 KRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFFP 84 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ IM Q++ V++P V Sbjct: 85 GYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPKV 144 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+ Sbjct: 145 LYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199 >gi|78043442|ref|YP_361133.1| transcription termination/antitermination factor NusG [Carboxydothermus hydrogenoformans Z-2901] gi|77995557|gb|ABB14456.1| transcription termination/antitermination factor NusG [Carboxydothermus hydrogenoformans Z-2901] Length = 173 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ + + + I +P E + ++ G+K S+R+ Sbjct: 1 MEKNWYVVHTYSGHENKVKANLEKRIESLNMGNHIFRILVPMEDELEIKDGKKKVSKRKI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ ++TD+ Y+ ++ TP V GF+G G P P+T E+ IM Q+ + P + Sbjct: 61 FPGYVLVEMILTDESYNVVRHTPGVTGFVG-GSKPIPLTAQEVRQIMKQMG--IDEPRTK 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + E+G+ V V+ GPF F G V+ + +K +V V V +FGR TP+EL ++QV KI Sbjct: 118 IDLEIGQPVRVNAGPFEGFVGNVEEIYPDKGKVKVLVSMFGRETPIELDFSQVTKI 173 >gi|307823429|ref|ZP_07653658.1| NusG antitermination factor [Methylobacter tundripaludum SV96] gi|307735414|gb|EFO06262.1| NusG antitermination factor [Methylobacter tundripaludum SV96] Length = 177 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YSN E K +++ R+ R GL+ +I +P+E VV +R G++ SER+F Sbjct: 1 MALRWYVVHAYSNFENKVKQALEERIKREGLEQYFGKILVPTEEVVEMRMGQQRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +KD P+V+GF+G + P+P+++ E I+N+VE V +P Sbjct: 61 FPGYVLVQMDLTDETWHLVKDVPRVLGFIGGTSDRPAPISEKEAMAILNRVEDGVNKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V DGPF FNG+V+ V+ EKS++ + V+IFGR T VEL + QVEK Sbjct: 121 KTMFEAGEVIRVIDGPFKDFNGVVEEVNYEKSKIKISVLIFGRSTSVELGFGQVEK 176 >gi|296315359|ref|ZP_06865300.1| transcription termination/antitermination factor NusG [Neisseria polysaccharea ATCC 43768] gi|296837688|gb|EFH21626.1| transcription termination/antitermination factor NusG [Neisseria polysaccharea ATCC 43768] Length = 178 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|253995706|ref|YP_003047770.1| NusG antitermination factor [Methylotenera mobilis JLW8] gi|253982385|gb|ACT47243.1| NusG antitermination factor [Methylotenera mobilis JLW8] Length = 178 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY VQ +S EK + + R+ RSGL +I +P E V+ ++ G+K SER+ Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERVVRSGLQDQFGQILVPIEEVIEMKAGQKTISERKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V F+G + P+P+ D E++ I+ +++ + P Sbjct: 61 YPGYVLVQMNMTDDTWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V ++DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL ++QVEK V Sbjct: 121 KLTFEKGESVRITDGPFKDFSGNVEEINYEKSKLRVSVVIFGRSTPVELEFSQVEKEV 178 >gi|126209181|ref|YP_001054406.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae L20] gi|165977153|ref|YP_001652746.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|126097973|gb|ABN74801.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877254|gb|ABY70302.1| transcription antitermination protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 176 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP Sbjct: 1 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E + I+N+V+ ++P Sbjct: 61 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 121 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 174 >gi|254693950|ref|ZP_05155778.1| transcription antitermination protein NusG [Brucella abortus bv. 3 str. Tulya] gi|261214243|ref|ZP_05928524.1| transcription antitermination protein NusG [Brucella abortus bv. 3 str. Tulya] gi|260915850|gb|EEX82711.1| transcription antitermination protein NusG [Brucella abortus bv. 3 str. Tulya] Length = 175 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 102/176 (57%), Positives = 135/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD V+ IK+TPKV GFLG P+PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPAPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+ Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175 >gi|322834826|ref|YP_004214853.1| NusG antitermination factor [Rahnella sp. Y9602] gi|321170027|gb|ADW75726.1| NusG antitermination factor [Rahnella sp. Y9602] Length = 181 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G + SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVVEIRGGLRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFGQVEK 180 >gi|310817023|ref|YP_003964987.1| transcription termination/antitermination factor NusG [Ketogulonicigenium vulgare Y25] gi|308755758|gb|ADO43687.1| transcription termination/antitermination factor NusG [Ketogulonicigenium vulgare Y25] Length = 177 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E+I +++ GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAETIRTKVAEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+DK +H + +V GFLG P P+ D+E+ I+N+V+ + P Sbjct: 61 MPGYVLVHMEMSDKGFHLVSSINRVTGFLGPQGRPMPMRDAEVNAILNRVQDVAETPRIQ 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE+V V+DGPF F+G V+ VD + R+ V V IFGR TPVEL + QV+K Sbjct: 121 VRFEIGEKVKVNDGPFEGFDGTVEEVDGDAQRLKVTVSIFGRATPVELEFTQVQK 175 >gi|152998283|ref|YP_001343118.1| NusG antitermination factor [Marinomonas sp. MWYL1] gi|150839207|gb|ABR73183.1| NusG antitermination factor [Marinomonas sp. MWYL1] Length = 177 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWY+VQ YS EK + S+ R+ G + +I +P+E VV +R G+K SER+F Sbjct: 1 MTKRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K T +V+GF+G + PSP+T E + I+ +V V +P Sbjct: 61 YPGYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FEVGE V V++GPFA FNG+V+ VD +KSR+ V V+IFGR TPV+L ++QVEK Sbjct: 121 KTLFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176 >gi|119502910|ref|ZP_01624995.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080] gi|119461256|gb|EAW42346.1| TonB-dependent receptor [marine gamma proteobacterium HTCC2080] Length = 177 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V +S EKK ++ R+ R+ + EI +P+E VV ++ G+K SER+F Sbjct: 1 MAMRWYVVHAFSQYEKKVAVALKERIERNSMQDYFGEIIVPTEEVVEMKGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +VEA V +P Sbjct: 61 FPGYVLVQMELNDDSWHLVKETPRVLGFIGGKADKPAPITEAEASAILQRVEAGVDQPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176 >gi|293602653|ref|ZP_06685095.1| transcription antitermination protein NusG [Achromobacter piechaudii ATCC 43553] gi|292818963|gb|EFF78002.1| transcription antitermination protein NusG [Achromobacter piechaudii ATCC 43553] Length = 177 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V VYS EK +++ R+ R+ L I +PSE VV V+ G+K +ERR Sbjct: 1 MSKRWYVVHVYSGMEKSVHKALVERIERAALQTSFGRILVPSEEVVEVKGGQKSITERRI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ +TD+ +H +K+T +V GFLG G P+P+++ E+E I++Q+E V++P Sbjct: 61 FPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEKEVEKILSQMEEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V +GPFA FNG V+ V+ EKS+V V V IFGR TPVEL ++QVEK Sbjct: 121 KILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEK 176 >gi|313667421|ref|YP_004047705.1| transcription antitermination protein [Neisseria lactamica ST-640] gi|313004883|emb|CBN86309.1| transcription antitermination protein [Neisseria lactamica 020-06] Length = 178 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 79/177 (44%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD ++ +K TP+V GF+G P P++ E E I+ QV+A ++P Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQAGAEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|34499653|ref|NP_903868.1| transcription antitermination protein NusG [Chromobacterium violaceum ATCC 12472] gi|34105503|gb|AAQ61858.1| transcription antitermination protein NusG [Chromobacterium violaceum ATCC 12472] Length = 177 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK +++ R+ RS + +I +P E VV V+ GRK +ER+F Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSDIADQFGQILVPVEEVVDVKNGRKSITERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD +H +K TPKV GF+G P+P++ E+E IM Q++ V++P Sbjct: 61 FPGYVLVEMEMTDDTWHLVKSTPKVTGFVGGTANRPAPISKKEVEAIMQQMQEGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V DGPF FNG V V+ E++++ V V IFGR TPVEL ++QVEK+ Sbjct: 121 KVLFEVGEKVRVIDGPFNDFNGSVDEVNYERNKLRVSVQIFGRDTPVELEFSQVEKL 177 >gi|193222431|emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas arsenicoxydans] Length = 192 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK + ++ R++R+G+ +I +P+E V+ V+ G+K SERRFFP Sbjct: 18 KRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G P+P+ E++ IM Q++ V++P V Sbjct: 78 GYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKV 137 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V + DGPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+ Sbjct: 138 LYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192 >gi|138893771|ref|YP_001124224.1| transcription antitermination protein NusG [Geobacillus thermodenitrificans NG80-2] gi|134265284|gb|ABO65479.1| Transcription antitermination factor [Geobacillus thermodenitrificans NG80-2] Length = 177 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + EI+ I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEIKLILKRMGMPLAEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177 >gi|237747354|ref|ZP_04577834.1| transcription antiterminator [Oxalobacter formigenes HOxBLS] gi|229378705|gb|EEO28796.1| transcription antiterminator [Oxalobacter formigenes HOxBLS] Length = 195 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V VYS EK S+ R+ R G+ +I +P+E VV V+ G+K +ERRFFP Sbjct: 21 MRWYVVHVYSGMEKSVRRSLLERIDRMGMADKFGQILVPTEEVVEVKSGQKSVTERRFFP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ MTD +H +KDT KV GF+G P+PV E++ ++ Q++ V +P + Sbjct: 81 GYVLIEMEMTDDTWHLVKDTGKVTGFVGGKSNKPTPVPAREMDKLLQQMQEGVDKPRPKI 140 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V + +GPFA FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 141 SYEVGELVRIKEGPFADFNGNVEEVNYEKSRLRVSVTIFGRSTPVELEFGQVEKV 195 >gi|307543813|ref|YP_003896292.1| transcription antitermination protein NusG [Halomonas elongata DSM 2581] gi|307215837|emb|CBV41107.1| transcription antitermination protein NusG [Halomonas elongata DSM 2581] Length = 177 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK + S+ R+ G++ EI +P+E VV VR G++ SER+F Sbjct: 1 MSKRWYVVHAYSGFEKHVMRSLTERVKLYGMEDRFGEILVPTEEVVEVRDGKRRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H + +TP+V+GF+G E P+P+T E + I+++V+ ++P Sbjct: 61 YPGYVLVEMEMADDTWHLVNETPRVMGFIGGTKEKPAPITQREADAILSRVKDGTEQPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V DGPFA FNG+V+ V+ +KSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 KTMFEPGQSVRVIDGPFADFNGVVEEVNYDKSRLQVSVLIFGRSTPVELEFAQVEK 176 >gi|257791876|ref|YP_003182482.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|317489879|ref|ZP_07948372.1| transcription termination/antitermination factor NusG [Eggerthella sp. 1_3_56FAA] gi|325829776|ref|ZP_08163234.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] gi|257475773|gb|ACV56093.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|316911034|gb|EFV32650.1| transcription termination/antitermination factor NusG [Eggerthella sp. 1_3_56FAA] gi|325487943|gb|EGC90380.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] Length = 176 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M +WY++ YS E K +++ R+ GL++ V I IP+E V +++G R+V SE++ Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFGIEIPTEMVTEIKEGGRRVESEKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D+ + +++TP V GF+G NP+P+T E IM + + S Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGADGNPAPLTRDEYNKIMKRTSREAPKKTS 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++QV KI Sbjct: 121 S-SLEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVMVSIFGRETPVELSFDQVAKI 176 >gi|308047968|ref|YP_003911534.1| transcription antitermination protein nusG [Ferrimonas balearica DSM 9799] gi|307630158|gb|ADN74460.1| transcription antitermination protein nusG [Ferrimonas balearica DSM 9799] Length = 181 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 MRWYVVQAFSGFEARVAQSLKEHIQMHGMEEFFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H +++ P+V+GF+G + P+P+T+ E I+N+++ A + P Sbjct: 67 GYVLVQMVMNDQSWHLVRNVPRVMGFIGGTSDRPAPITEKEANAILNRLQEATESPRHRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 127 IFEPGEVVRVTDGPFADFNGTVEEVDYEKSRLKVSVMIFGRSTPVELDFGQVEK 180 >gi|261378971|ref|ZP_05983544.1| transcription termination/antitermination factor NusG [Neisseria cinerea ATCC 14685] gi|269144586|gb|EEZ71004.1| transcription termination/antitermination factor NusG [Neisseria cinerea ATCC 14685] Length = 178 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 116/177 (65%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MAKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD ++ +K TP+V GF+G P P++ E E I+ QV+ ++P Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KIEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|145297373|ref|YP_001140214.1| transcription termination/antitermination factor NusG [Aeromonas salmonicida subsp. salmonicida A449] gi|142850145|gb|ABO88466.1| transcription termination/antitermination factor NusG [Aeromonas salmonicida subsp. salmonicida A449] Length = 183 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFP Sbjct: 9 MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M + +H +++ P+V+GF+G + P+P++D E + I+N+++ A +P Sbjct: 69 GYVLVQMLMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182 >gi|117619084|ref|YP_858461.1| transcription termination/antitermination factor NusG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|330831432|ref|YP_004394384.1| transcription termination/antitermination factor NusG [Aeromonas veronii B565] gi|117560491|gb|ABK37439.1| transcription termination/antitermination factor NusG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|328806568|gb|AEB51767.1| transcription termination/antitermination factor NusG [Aeromonas veronii B565] Length = 183 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ + E+ +P+E VV +R G+K SER+FFP Sbjct: 9 MRWYVVQAFSGYEGRVAKSLREHIKMHGMEDMFGEVLVPTEEVVEMRAGQKRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M + +H +++ P+V+GF+G + P+P++D E + I+N+++ A +P Sbjct: 69 GYVLVQMIMDETTWHLVRNVPRVMGFIGGTSDRPAPISDKEADAILNRLQDAHDKPRPKT 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EKSRV V V+IFGR TPVEL + QVEK Sbjct: 129 LFEPGEMVRVADGPFADFNGTVEEVDYEKSRVKVSVLIFGRSTPVELDFGQVEK 182 >gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX] gi|71916790|gb|AAZ56692.1| transcription antitermination protein nusG [Thermobifida fusca YX] Length = 250 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E + ++ R ++ + ++ +P++ V V+ G++ + PGY Sbjct: 72 WYVVHTYAGYENRVKANLENRTQSLNMEDYIFQVEVPTQEVTEVKSGKRQQVTEKVLPGY 131 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-------AVQRP 117 VL++ +TD+ + ++ TP V GF+G P P++ E+ ++ P Sbjct: 132 VLVRMELTDESWAAVRHTPGVTGFVGLSNRPVPLSLDEVAELLAPEPETEEEQAKKEAEP 191 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E+GE V V DGPFA+ V V+ + ++ V V IFGR TPVEL +NQV KI Sbjct: 192 RGEVEYEIGESVTVMDGPFATLPATVSEVNPDTQKLKVLVSIFGRETPVELGFNQVSKI 250 >gi|251793503|ref|YP_003008232.1| transcription termination/antitermination factor NusG [Aggregatibacter aphrophilus NJ8700] gi|247534899|gb|ACS98145.1| transcription termination/antitermination factor NusG [Aggregatibacter aphrophilus NJ8700] Length = 183 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP Sbjct: 8 KRWYVLQAFSGFEARVATTLREYIKLHQMEEQFGEVLVPTEEVVENVAGKRRKSERKYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H ++ P+V+GF+G + P+P+++ E + I+N++E +P Sbjct: 68 GYVLVQMEMNDDTWHLVRSVPRVMGFIGGTPDKPAPISNREADIILNRLEQNSDKPKPRT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPF FNG V+ +D EK R+ V V IFGR TPVEL + QVEK Sbjct: 128 TFQPGEEVRVTEGPFIDFNGTVEEIDYEKGRLKVSVSIFGRATPVELEFGQVEK 181 >gi|32034812|ref|ZP_00134924.1| COG0250: Transcription antiterminator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151046|ref|YP_001969571.1| transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249959|ref|ZP_07336161.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253131|ref|ZP_07339280.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246643|ref|ZP_07528714.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248770|ref|ZP_07530783.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253389|ref|ZP_07535260.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255628|ref|ZP_07537433.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257804|ref|ZP_07539561.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260079|ref|ZP_07541791.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262208|ref|ZP_07543858.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264409|ref|ZP_07545995.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916177|gb|ACE62429.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647813|gb|EFL78020.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651022|gb|EFL81176.1| transcription antitermination protein NusG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852515|gb|EFM84749.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854697|gb|EFM86887.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859068|gb|EFM91110.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861477|gb|EFM93466.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863710|gb|EFM95636.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865915|gb|EFM97791.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868082|gb|EFM99908.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870225|gb|EFN01983.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 187 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E + I+N+V+ ++P Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 132 EFQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185 >gi|144900868|emb|CAM77732.1| transcription antitermination protein [Magnetospirillum gryphiswaldense MSR-1] Length = 177 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 98/175 (56%), Positives = 126/175 (72%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY+V VYS EKK +SI + + G+ + +I +P+E VV VR+G KVN+ER+FF Sbjct: 3 TARWYVVHVYSGFEKKVSQSIREQAEQKGMAEMFEQILVPTEEVVEVRRGTKVNAERKFF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E IM QV+ V+RP SV Sbjct: 63 PGYVLVKMELTDDSWHLVKNTPKVTGFLGGKGRPVPITEREAERIMQQVQEGVERPKPSV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V DGPF SFNG+V+ VDEE++R+ V V IFGR TPVEL Y QVEK+ Sbjct: 123 VFEVGEQVRVCDGPFTSFNGMVEEVDEERARLKVAVSIFGRSTPVELEYAQVEKV 177 >gi|117918645|ref|YP_867837.1| transcription antitermination protein nusG [Shewanella sp. ANA-3] gi|117610977|gb|ABK46431.1| transcription antitermination protein nusG [Shewanella sp. ANA-3] Length = 183 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ P V Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182 >gi|258513627|ref|YP_003189849.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771] gi|257777332|gb|ACV61226.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 175 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K ++ R+ ++ + I +P E V ++ G+K S+++ Sbjct: 1 MDKQWYVVHTYSGYENKVKANLEKRIESMNMEDKIFRILVPMEDEVEIKNGKKKISKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ +MTD ++ +++TP V GF+G+G P P+ D+E I+ Q+ ++ P + Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSKPIPLNDAEAAQIIKQMG--LEEPRAR 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE + V GPF F G ++ + +K +V V + +FGR TPVEL + Q+ ++ Sbjct: 119 YDYNTGEIIRVISGPFEGFEGHIEELLLDKEKVRVMISMFGRETPVELDFTQIARL 174 >gi|78484628|ref|YP_390553.1| NusG antitermination factor [Thiomicrospira crunogena XCL-2] gi|78362914|gb|ABB40879.1| transcription antitermination protein nusG [Thiomicrospira crunogena XCL-2] Length = 177 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K + + + R+GL +I +PSE VV +R+G+K SER+F Sbjct: 1 MAQRWYVVHAYSGYENKVKKGLSEYIERAGLQDSFGQILVPSEEVVEIREGKKRTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M + +H +K P+V+GF+G + P+P++ E++ I+ +VE V +P Sbjct: 61 FPGYVLVQMEMNEDTWHLVKSVPQVMGFIGGTSDRPAPISQKEVDRILQKVEEGVDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +E GE V V DGPF F +V+ VD +K+++ V V+IFGR TPVEL + QVEK Sbjct: 121 KVIYEPGEMVRVIDGPFNDFEAVVEGVDYDKNKLQVSVLIFGRSTPVELEFTQVEK 176 >gi|223041760|ref|ZP_03611953.1| transcription antitermination protein NusG [Actinobacillus minor 202] gi|240948037|ref|ZP_04752454.1| transcription antitermination protein NusG [Actinobacillus minor NM305] gi|223017444|gb|EEF15862.1| transcription antitermination protein NusG [Actinobacillus minor 202] gi|240297653|gb|EER48130.1| transcription antitermination protein NusG [Actinobacillus minor NM305] Length = 186 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 106/174 (60%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E ++ G++ +ER+FFP Sbjct: 10 KRWYVLQAFSGFENRVAVTLREYIKLHHMEEQFGEVLVPTEEIIENVGGKRRKTERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D + ++ P+V+GF+G + P+P++ E + I+N+V+ +P Sbjct: 70 GYVLVEMEMNDYTWQLVRSVPRVMGFIGGTADKPAPISKKEADRILNRVQETADKPRHRN 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + GE V V++GPFA F G V+ VD EK RV V V IFGR TPVEL +NQVEK Sbjct: 130 EYFPGESVRVTEGPFADFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 183 >gi|49475393|ref|YP_033434.1| transcription antitermination protein NusG [Bartonella henselae str. Houston-1] gi|49238199|emb|CAF27409.1| Transcription antitermination protein [Bartonella henselae str. Houston-1] Length = 176 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 137/176 (77%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERV+ VR+GRKV++ER+F Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVIEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P +S Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPVPISDREAEQILKQVQERVESPKAS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L +NQVEK+ Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFNQVEKL 176 >gi|297569434|ref|YP_003690778.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2] gi|296925349|gb|ADH86159.1| NusG antitermination factor [Desulfurivibrio alkaliphilus AHT2] Length = 176 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 112/176 (63%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E++ ++ R+ +G + + EI +P+E+VV + KG + S R+F Sbjct: 1 MARRWYILHTYSGFEEQVKTALQERIKNAGQEEMFGEILVPTEQVVEMVKGARKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + ++ +HT++ TPKV GF+G NP P+ D + I+ +++ +P Sbjct: 61 FPGYILVNVDLNEETWHTVRGTPKVTGFIGNDLNPEPLADEDAMKIIGRIQDGALKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE G++V V DGPFA+F G+V V+ EK RV V V IFGR TPVEL + QV KI Sbjct: 121 VSFEEGDQVRVVDGPFANFQGVVDEVNPEKGRVRVRVSIFGRETPVELEFIQVSKI 176 >gi|197117311|ref|YP_002137738.1| transcription termination/antitermination factor NusG [Geobacter bemidjiensis Bem] gi|253701934|ref|YP_003023123.1| NusG antitermination factor [Geobacter sp. M21] gi|197086671|gb|ACH37942.1| transcription termination/antitermination factor NusG [Geobacter bemidjiensis Bem] gi|251776784|gb|ACT19365.1| NusG antitermination factor [Geobacter sp. M21] Length = 175 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDDEVAKITKRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174 >gi|24371817|ref|NP_715859.1| transcription antitermination protein NusG [Shewanella oneidensis MR-1] gi|113968532|ref|YP_732325.1| transcription antitermination protein nusG [Shewanella sp. MR-4] gi|114045695|ref|YP_736245.1| transcription antitermination protein nusG [Shewanella sp. MR-7] gi|24345622|gb|AAN53304.1|AE015471_9 transcription antitermination protein NusG [Shewanella oneidensis MR-1] gi|113883216|gb|ABI37268.1| transcription antitermination protein nusG [Shewanella sp. MR-4] gi|113887137|gb|ABI41188.1| transcription antitermination protein nusG [Shewanella sp. MR-7] Length = 183 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ P V Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182 >gi|295401934|ref|ZP_06811897.1| NusG antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|312109247|ref|YP_003987563.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1] gi|294976064|gb|EFG51679.1| NusG antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|311214348|gb|ADP72952.1| NusG antitermination factor [Geobacillus sp. Y4.1MC1] Length = 177 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ G+ + I +P E + G+K ++R+ Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETETKSGKKKAAKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRMGMQLAE- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI Sbjct: 120 -LDVDYELKETVRVKEGPFANFTGTIEEIDVDKRKVKVLVNMFGRETPVEFEFSQIEKI 177 >gi|196251119|ref|ZP_03149798.1| NusG antitermination factor [Geobacillus sp. G11MC16] gi|196209360|gb|EDY04140.1| NusG antitermination factor [Geobacillus sp. G11MC16] Length = 177 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDIKNGKRKTTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKLILKRMGMPLAEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EV E V + +GPFA+F G V+ +D +K +V + V +FGR T VEL ++Q+EKI Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKVEAIDPDKQKVKLLVDMFGRETRVELEFSQIEKI 177 >gi|16802292|ref|NP_463777.1| transcription antitermination protein NusG [Listeria monocytogenes EGD-e] gi|46906479|ref|YP_012868.1| transcription antitermination protein NusG [Listeria monocytogenes str. 4b F2365] gi|47094614|ref|ZP_00232254.1| transcription antitermination factor NusG [Listeria monocytogenes str. 4b H7858] gi|217965667|ref|YP_002351345.1| transcription termination/antitermination factor NusG [Listeria monocytogenes HCC23] gi|224498908|ref|ZP_03667257.1| transcription antitermination protein NusG [Listeria monocytogenes Finland 1988] gi|224502460|ref|ZP_03670767.1| transcription antitermination protein NusG [Listeria monocytogenes FSL R2-561] gi|226222874|ref|YP_002756981.1| transcription antitermination factor [Listeria monocytogenes Clip81459] gi|254825710|ref|ZP_05230711.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J1-194] gi|254828706|ref|ZP_05233393.1| transcription antitermination protein NusG [Listeria monocytogenes FSL N3-165] gi|254831929|ref|ZP_05236584.1| transcription antitermination protein NusG [Listeria monocytogenes 10403S] gi|254853487|ref|ZP_05242835.1| transcription antitermination protein NusG [Listeria monocytogenes FSL R2-503] gi|254900573|ref|ZP_05260497.1| transcription antitermination protein NusG [Listeria monocytogenes J0161] gi|254913476|ref|ZP_05263488.1| transcription antitermination factor NusG [Listeria monocytogenes J2818] gi|254932465|ref|ZP_05265824.1| transcription antitermination protein NusG [Listeria monocytogenes HPB2262] gi|254937943|ref|ZP_05269640.1| transcription antitermination protein NusG [Listeria monocytogenes F6900] gi|254991754|ref|ZP_05273944.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J2-064] gi|255026643|ref|ZP_05298629.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J2-003] gi|255030086|ref|ZP_05302037.1| transcription antitermination protein NusG [Listeria monocytogenes LO28] gi|255520310|ref|ZP_05387547.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J1-175] gi|284800540|ref|YP_003412405.1| transcription antitermination protein NusG [Listeria monocytogenes 08-5578] gi|284993726|ref|YP_003415494.1| transcription antitermination protein NusG [Listeria monocytogenes 08-5923] gi|290892613|ref|ZP_06555606.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J2-071] gi|300764629|ref|ZP_07074621.1| transcription antitermination factor NusG [Listeria monocytogenes FSL N1-017] gi|315274839|ref|ZP_07869502.1| transcription termination/antitermination factor NusG [Listeria marthii FSL S4-120] gi|16409611|emb|CAD00773.1| transcription antitermination factor [Listeria monocytogenes EGD-e] gi|46879743|gb|AAT03045.1| transcription antitermination factor NusG [Listeria monocytogenes serotype 4b str. F2365] gi|47017011|gb|EAL07904.1| transcription antitermination factor NusG [Listeria monocytogenes str. 4b H7858] gi|217334937|gb|ACK40731.1| transcription termination/antitermination factor NusG [Listeria monocytogenes HCC23] gi|225875336|emb|CAS04033.1| transcription antitermination factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601111|gb|EEW14436.1| transcription antitermination protein NusG [Listeria monocytogenes FSL N3-165] gi|258606859|gb|EEW19467.1| transcription antitermination protein NusG [Listeria monocytogenes FSL R2-503] gi|258610552|gb|EEW23160.1| transcription antitermination protein NusG [Listeria monocytogenes F6900] gi|284056102|gb|ADB67043.1| transcription antitermination protein NusG [Listeria monocytogenes 08-5578] gi|284059193|gb|ADB70132.1| transcription antitermination protein NusG [Listeria monocytogenes 08-5923] gi|290557922|gb|EFD91443.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J2-071] gi|293584021|gb|EFF96053.1| transcription antitermination protein NusG [Listeria monocytogenes HPB2262] gi|293591484|gb|EFF99818.1| transcription antitermination factor NusG [Listeria monocytogenes J2818] gi|293594954|gb|EFG02715.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J1-194] gi|300514736|gb|EFK41791.1| transcription antitermination factor NusG [Listeria monocytogenes FSL N1-017] gi|307569785|emb|CAR82964.1| transcription antitermination factor [Listeria monocytogenes L99] gi|313611163|gb|EFR85988.1| transcription termination/antitermination factor NusG [Listeria monocytogenes FSL F2-208] gi|313615704|gb|EFR88994.1| transcription termination/antitermination factor NusG [Listeria marthii FSL S4-120] gi|328467855|gb|EGF38895.1| transcription antitermination protein NusG [Listeria monocytogenes 1816] gi|328476087|gb|EGF46796.1| transcription antitermination protein NusG [Listeria monocytogenes 220] Length = 177 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+ Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177 >gi|15676054|ref|NP_273184.1| transcription antitermination protein NusG [Neisseria meningitidis MC58] gi|59802177|ref|YP_208889.1| transcription antitermination protein NusG [Neisseria gonorrhoeae FA 1090] gi|121634004|ref|YP_974249.1| transcription antitermination protein NusG [Neisseria meningitidis FAM18] gi|218767186|ref|YP_002341698.1| transcription antitermination protein NusG [Neisseria meningitidis Z2491] gi|239997908|ref|ZP_04717832.1| transcription antitermination protein NusG [Neisseria gonorrhoeae 35/02] gi|240015113|ref|ZP_04722026.1| transcription antitermination protein NusG [Neisseria gonorrhoeae DGI18] gi|240017562|ref|ZP_04724102.1| transcription antitermination protein NusG [Neisseria gonorrhoeae FA6140] gi|240081705|ref|ZP_04726248.1| transcription antitermination protein NusG [Neisseria gonorrhoeae FA19] gi|240113981|ref|ZP_04728471.1| transcription antitermination protein NusG [Neisseria gonorrhoeae MS11] gi|240116717|ref|ZP_04730779.1| transcription antitermination protein NusG [Neisseria gonorrhoeae PID18] gi|240118939|ref|ZP_04733001.1| transcription antitermination protein NusG [Neisseria gonorrhoeae PID1] gi|240122184|ref|ZP_04735146.1| transcription antitermination protein NusG [Neisseria gonorrhoeae PID24-1] gi|240124477|ref|ZP_04737433.1| transcription antitermination protein NusG [Neisseria gonorrhoeae PID332] gi|240124655|ref|ZP_04737541.1| transcription antitermination protein NusG [Neisseria gonorrhoeae SK-92-679] gi|240129151|ref|ZP_04741812.1| transcription antitermination protein NusG [Neisseria gonorrhoeae SK-93-1035] gi|254494738|ref|ZP_05107909.1| transcription antitermination protein [Neisseria gonorrhoeae 1291] gi|254805828|ref|YP_003084049.1| putative transcription antitermination protein [Neisseria meningitidis alpha14] gi|260439524|ref|ZP_05793340.1| transcription antitermination protein NusG [Neisseria gonorrhoeae DGI2] gi|268593758|ref|ZP_06127925.1| transcription antitermination protein nusG [Neisseria gonorrhoeae 35/02] gi|268597803|ref|ZP_06131970.1| transcription antitermination protein nusG [Neisseria gonorrhoeae FA19] gi|268600046|ref|ZP_06134213.1| transcription antitermination protein [Neisseria gonorrhoeae MS11] gi|268602388|ref|ZP_06136555.1| transcription antitermination protein [Neisseria gonorrhoeae PID18] gi|268604650|ref|ZP_06138817.1| transcription antitermination protein [Neisseria gonorrhoeae PID1] gi|268683108|ref|ZP_06149970.1| transcription antitermination protein [Neisseria gonorrhoeae PID332] gi|268683229|ref|ZP_06150091.1| transcription antitermination protein [Neisseria gonorrhoeae SK-92-679] gi|268687535|ref|ZP_06154397.1| transcription antitermination protein [Neisseria gonorrhoeae SK-93-1035] gi|291042759|ref|ZP_06568500.1| transcription antitermination protein nusG [Neisseria gonorrhoeae DGI2] gi|293398220|ref|ZP_06642425.1| transcription termination/antitermination factor NusG [Neisseria gonorrhoeae F62] gi|304388927|ref|ZP_07370974.1| transcription termination/antitermination factor NusG [Neisseria meningitidis ATCC 13091] gi|54037929|sp|P65592|NUSG_NEIMB RecName: Full=Transcription antitermination protein nusG gi|54041679|sp|P65591|NUSG_NEIMA RecName: Full=Transcription antitermination protein nusG gi|7225343|gb|AAF40585.1| transcription antitermination protein NusG [Neisseria meningitidis MC58] gi|59719072|gb|AAW90477.1| putative transcription antitermination protein [Neisseria gonorrhoeae FA 1090] gi|120865710|emb|CAM09437.1| transcription antitermination protein [Neisseria meningitidis FAM18] gi|121051194|emb|CAM07465.1| transcription antitermination protein [Neisseria meningitidis Z2491] gi|226513778|gb|EEH63123.1| transcription antitermination protein [Neisseria gonorrhoeae 1291] gi|254669370|emb|CBA08487.1| putative transcription antitermination protein [Neisseria meningitidis alpha14] gi|261391664|emb|CAX49112.1| transcription antitermination protein NusG [Neisseria meningitidis 8013] gi|268547147|gb|EEZ42565.1| transcription antitermination protein nusG [Neisseria gonorrhoeae 35/02] gi|268551591|gb|EEZ46610.1| transcription antitermination protein nusG [Neisseria gonorrhoeae FA19] gi|268584177|gb|EEZ48853.1| transcription antitermination protein [Neisseria gonorrhoeae MS11] gi|268586519|gb|EEZ51195.1| transcription antitermination protein [Neisseria gonorrhoeae PID18] gi|268588781|gb|EEZ53457.1| transcription antitermination protein [Neisseria gonorrhoeae PID1] gi|268623392|gb|EEZ55792.1| transcription antitermination protein [Neisseria gonorrhoeae PID332] gi|268623513|gb|EEZ55913.1| transcription antitermination protein [Neisseria gonorrhoeae SK-92-679] gi|268627819|gb|EEZ60219.1| transcription antitermination protein [Neisseria gonorrhoeae SK-93-1035] gi|291013193|gb|EFE05159.1| transcription antitermination protein nusG [Neisseria gonorrhoeae DGI2] gi|291611483|gb|EFF40553.1| transcription termination/antitermination factor NusG [Neisseria gonorrhoeae F62] gi|304337061|gb|EFM03248.1| transcription termination/antitermination factor NusG [Neisseria meningitidis ATCC 13091] gi|308388344|gb|ADO30664.1| transcription antitermination protein [Neisseria meningitidis alpha710] gi|319411391|emb|CBY91802.1| transcription antitermination protein NusG [Neisseria meningitidis WUE 2594] gi|325127120|gb|EGC50074.1| transcription termination/antitermination factor NusG [Neisseria meningitidis N1568] gi|325133040|gb|EGC55712.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M6190] gi|325135132|gb|EGC57758.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M13399] gi|325137185|gb|EGC59780.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M0579] gi|325139019|gb|EGC61565.1| transcription termination/antitermination factor NusG [Neisseria meningitidis ES14902] gi|325141141|gb|EGC63641.1| transcription termination/antitermination factor NusG [Neisseria meningitidis CU385] gi|325145324|gb|EGC67601.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M01-240013] gi|325197415|gb|ADY92871.1| transcription termination/antitermination factor NusG [Neisseria meningitidis G2136] gi|325199340|gb|ADY94795.1| transcription termination/antitermination factor NusG [Neisseria meningitidis H44/76] gi|325203039|gb|ADY98493.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M01-240149] gi|325205219|gb|ADZ00672.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M04-240196] gi|325207162|gb|ADZ02614.1| transcription termination/antitermination factor NusG [Neisseria meningitidis NZ-05/33] Length = 178 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177 >gi|260770575|ref|ZP_05879507.1| transcription antitermination protein NusG [Vibrio furnissii CIP 102972] gi|260614405|gb|EEX39592.1| transcription antitermination protein NusG [Vibrio furnissii CIP 102972] gi|315178369|gb|ADT85283.1| transcription antiterminator [Vibrio furnissii NCTC 11218] Length = 182 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MFEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|226309792|ref|YP_002769686.1| transcription antitermination protein [Brevibacillus brevis NBRC 100599] gi|226092740|dbj|BAH41182.1| transcription antitermination protein [Brevibacillus brevis NBRC 100599] Length = 178 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 5/177 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ RL G++ + + +P+E V + G+K ++ Sbjct: 1 MEKAWYVLHTYSGYENKVKTNLEKRLESMGMEDKIFRVLVPTEEEVETKDGKKRTVTKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ ++ P Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALRPEEADTILKQMG--IEIP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V F + + V V+DGPF++ G + + ++ +V V V IFGR TPVEL + QV+ Sbjct: 119 KIRVDFALRDMVRVTDGPFSNRTGEIIEIYPDRQKVRVLVDIFGRETPVELDFTQVQ 175 >gi|156972590|ref|YP_001443497.1| transcription antitermination protein NusG [Vibrio harveyi ATCC BAA-1116] gi|156524184|gb|ABU69270.1| hypothetical protein VIBHAR_00230 [Vibrio harveyi ATCC BAA-1116] Length = 182 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHSMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|68249293|ref|YP_248405.1| transcription antitermination protein NusG [Haemophilus influenzae 86-028NP] gi|145628433|ref|ZP_01784234.1| transcription antitermination protein NusG [Haemophilus influenzae 22.1-21] gi|145633842|ref|ZP_01789564.1| transcription antitermination protein NusG [Haemophilus influenzae 3655] gi|145635955|ref|ZP_01791640.1| transcription antitermination protein NusG [Haemophilus influenzae PittAA] gi|145637968|ref|ZP_01793607.1| transcription antitermination protein NusG [Haemophilus influenzae PittHH] gi|145639477|ref|ZP_01795082.1| transcription antitermination protein NusG [Haemophilus influenzae PittII] gi|145642380|ref|ZP_01797940.1| transcription antitermination protein NusG [Haemophilus influenzae R3021] gi|148826639|ref|YP_001291392.1| transcription antitermination protein NusG [Haemophilus influenzae PittEE] gi|148827885|ref|YP_001292638.1| transcription antitermination protein NusG [Haemophilus influenzae PittGG] gi|229845550|ref|ZP_04465678.1| transcription antitermination protein NusG [Haemophilus influenzae 6P18H1] gi|229847175|ref|ZP_04467279.1| transcription antitermination protein NusG [Haemophilus influenzae 7P49H1] gi|260581525|ref|ZP_05849333.1| transcription termination/antitermination factor NusG [Haemophilus influenzae RdAW] gi|260583372|ref|ZP_05851143.1| transcription termination/antitermination factor NusG [Haemophilus influenzae NT127] gi|319775442|ref|YP_004137930.1| transcription antitermination protein NusG [Haemophilus influenzae F3047] gi|319897848|ref|YP_004136045.1| transcription antitermination protein nusg [Haemophilus influenzae F3031] gi|329122528|ref|ZP_08251112.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Haemophilus aegyptius ATCC 11116] gi|68057492|gb|AAX87745.1| transcription antitermination protein NusG [Haemophilus influenzae 86-028NP] gi|144980208|gb|EDJ89867.1| transcription antitermination protein NusG [Haemophilus influenzae 22.1-21] gi|144985284|gb|EDJ92123.1| transcription antitermination protein NusG [Haemophilus influenzae 3655] gi|145266788|gb|EDK06807.1| transcription antitermination protein NusG [Haemophilus influenzae PittAA] gi|145268834|gb|EDK08798.1| transcription antitermination protein NusG [Haemophilus influenzae PittHH] gi|145271524|gb|EDK11436.1| transcription antitermination protein NusG [Haemophilus influenzae PittII] gi|145272923|gb|EDK12809.1| transcription antitermination protein NusG [Haemophilus influenzae 22.4-21] gi|148716799|gb|ABQ99009.1| transcription antitermination protein NusG [Haemophilus influenzae PittEE] gi|148719127|gb|ABR00255.1| transcription antitermination protein NusG [Haemophilus influenzae PittGG] gi|229809851|gb|EEP45573.1| transcription antitermination protein NusG [Haemophilus influenzae 7P49H1] gi|229811566|gb|EEP47267.1| transcription antitermination protein NusG [Haemophilus influenzae 6P18H1] gi|260091823|gb|EEW75778.1| transcription termination/antitermination factor NusG [Haemophilus influenzae RdAW] gi|260093577|gb|EEW77494.1| transcription termination/antitermination factor NusG [Haemophilus influenzae NT127] gi|301169435|emb|CBW29035.1| transcription termination factor [Haemophilus influenzae 10810] gi|309751684|gb|ADO81668.1| Transcription antitermination protein NusG [Haemophilus influenzae R2866] gi|309973786|gb|ADO96987.1| Transcription antitermination protein NusG [Haemophilus influenzae R2846] gi|317433354|emb|CBY81733.1| transcription antitermination protein NusG [Haemophilus influenzae F3031] gi|317450033|emb|CBY86247.1| transcription antitermination protein NusG [Haemophilus influenzae F3047] gi|327473157|gb|EGF18580.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Haemophilus aegyptius ATCC 11116] Length = 185 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP Sbjct: 10 KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P Sbjct: 70 GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 184 >gi|261401760|ref|ZP_05987885.1| transcription termination/antitermination factor NusG [Neisseria lactamica ATCC 23970] gi|269208098|gb|EEZ74553.1| transcription termination/antitermination factor NusG [Neisseria lactamica ATCC 23970] Length = 178 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK ++ R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MSKKWYVVQAYSGFEKNVQRTLEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD ++ +K TP+V GF+G P P++ E E I+ QV+ ++P Sbjct: 61 YPGYVLVEMEMTDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGSEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+++ V++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 121 KVEFEVGQQIRVNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 177 >gi|237809527|ref|YP_002893967.1| NusG antitermination factor [Tolumonas auensis DSM 9187] gi|237501788|gb|ACQ94381.1| NusG antitermination factor [Tolumonas auensis DSM 9187] Length = 180 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 121/175 (69%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ EI +P+E VV +R G+K SER+FFP Sbjct: 6 MRWYVVQAFSGFEGRVAKSLKEHIKMHGMEDQFGEILVPTEEVVEMRAGQKRKSERKFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D +H +++ P+V+GF+G + P+P+TD E + I+N+++ +V +P Sbjct: 66 GYVLVQMIMNDASWHLVRNVPRVMGFIGGTSDRPAPITDKEADAILNRLQESVDKPKHKT 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE + VSDGPFA FNG V+ VD +KSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 126 LFEPGEVIRVSDGPFADFNGTVEEVDYDKSRMKVSVLIFGRATPVELDFSQVEKV 180 >gi|120596977|ref|YP_961551.1| NusG antitermination factor [Shewanella sp. W3-18-1] gi|146294853|ref|YP_001185277.1| NusG antitermination factor [Shewanella putrefaciens CN-32] gi|120557070|gb|ABM22997.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1] gi|145566543|gb|ABP77478.1| transcription antitermination protein nusG [Shewanella putrefaciens CN-32] gi|319424568|gb|ADV52642.1| NusG antitermination factor [Shewanella putrefaciens 200] Length = 183 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E V+ +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ P V Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDKEADAILRRLQETTASPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL ++QVEK Sbjct: 129 IFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182 >gi|297564023|ref|YP_003682996.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848472|gb|ADH70490.1| NusG antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 280 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ EK+ ++ R ++ + ++ +P V V+ G++ + PGY Sbjct: 96 WYVVHTYAGYEKRVKANVESRTQSLNMEEYIFQVEVPEHEVTEVKSGKRQQVTEKVLPGY 155 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD+ + I++TP V GF+G P+P++ +E+ ++ + Sbjct: 156 VLVRMDLTDESWSAIRNTPGVTGFVGLSNKPAPLSLTEVAKLLAPEPEVEPEQAQQARTA 215 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V V +EVGE V V +GPFA+ V ++ + ++ V V IFGR TPVEL++N Sbjct: 216 GGVGEARMDVAYEVGESVTVMEGPFATLPATVSEINPDTQKLKVLVSIFGRETPVELSFN 275 Query: 172 QVEKI 176 QV KI Sbjct: 276 QVAKI 280 >gi|188584822|ref|YP_001916367.1| transcription antitermination protein nusG [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349509|gb|ACB83779.1| transcription antitermination protein nusG [Natranaerobius thermophilus JW/NM-WN-LF] Length = 174 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +W++V YS E K ++ R++ G+D + I +P+E ++++ GR+ E++ Sbjct: 1 MEKQWFVVHTYSGYENKVKTNLEKRVASMGMDDKIFRIVVPTETQINIKDGRRQEKEKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYV+++ VM + ++ +++TP V GF+G+G P P+ + E+ IM Q+ + P Sbjct: 61 FPGYVIVEMVMDEDSWYVVRNTPGVTGFVGSGAKPVPLNEDEVASIMKQMG--YEEPKKE 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E G+ V + +GPF +F+G ++ V +K +V V V +FGR TPVEL + QVEK+ Sbjct: 119 VDLEAGQEVKILEGPFENFSGQIEEVYPDKEKVKVTVSMFGRETPVELDFEQVEKV 174 >gi|17987027|ref|NP_539661.1| transcription antitermination protein NusG [Brucella melitensis bv. 1 str. 16M] gi|23502126|ref|NP_698253.1| transcription antitermination protein NusG [Brucella suis 1330] gi|62290159|ref|YP_221952.1| transcription antitermination protein NusG [Brucella abortus bv. 1 str. 9-941] gi|82700081|ref|YP_414655.1| transcription antitermination protein NusG [Brucella melitensis biovar Abortus 2308] gi|148560341|ref|YP_001259167.1| transcription antitermination protein NusG [Brucella ovis ATCC 25840] gi|161619204|ref|YP_001593091.1| transcription antitermination protein NusG [Brucella canis ATCC 23365] gi|163843513|ref|YP_001627917.1| transcription antitermination protein NusG [Brucella suis ATCC 23445] gi|189024395|ref|YP_001935163.1| Bacterial transcription antitermination protein NusG [Brucella abortus S19] gi|225627717|ref|ZP_03785754.1| transcription termination/antitermination factor NusG [Brucella ceti str. Cudo] gi|225852745|ref|YP_002732978.1| transcription antitermination protein NusG [Brucella melitensis ATCC 23457] gi|237815667|ref|ZP_04594664.1| transcription termination/antitermination factor NusG [Brucella abortus str. 2308 A] gi|254689465|ref|ZP_05152719.1| transcription antitermination protein NusG [Brucella abortus bv. 6 str. 870] gi|254697602|ref|ZP_05159430.1| transcription antitermination protein NusG [Brucella abortus bv. 2 str. 86/8/59] gi|254701988|ref|ZP_05163816.1| transcription antitermination protein NusG [Brucella suis bv. 5 str. 513] gi|254704530|ref|ZP_05166358.1| transcription antitermination protein NusG [Brucella suis bv. 3 str. 686] gi|254706574|ref|ZP_05168402.1| transcription antitermination protein NusG [Brucella pinnipedialis M163/99/10] gi|254710316|ref|ZP_05172127.1| transcription antitermination protein NusG [Brucella pinnipedialis B2/94] gi|254730494|ref|ZP_05189072.1| transcription antitermination protein NusG [Brucella abortus bv. 4 str. 292] gi|256031810|ref|ZP_05445424.1| transcription antitermination protein NusG [Brucella pinnipedialis M292/94/1] gi|256044895|ref|ZP_05447799.1| transcription antitermination protein NusG [Brucella melitensis bv. 1 str. Rev.1] gi|256113803|ref|ZP_05454603.1| transcription antitermination protein NusG [Brucella melitensis bv. 3 str. Ether] gi|256159983|ref|ZP_05457698.1| transcription antitermination protein NusG [Brucella ceti M490/95/1] gi|256255211|ref|ZP_05460747.1| transcription antitermination protein NusG [Brucella ceti B1/94] gi|256257712|ref|ZP_05463248.1| transcription antitermination protein NusG [Brucella abortus bv. 9 str. C68] gi|256263768|ref|ZP_05466300.1| bacterial transcription antitermination protein NusG [Brucella melitensis bv. 2 str. 63/9] gi|256369671|ref|YP_003107181.1| transcription antitermination protein NusG [Brucella microti CCM 4915] gi|260168944|ref|ZP_05755755.1| transcription antitermination protein NusG [Brucella sp. F5/99] gi|260546704|ref|ZP_05822443.1| bacterial transcription antitermination protein NusG [Brucella abortus NCTC 8038] gi|260565503|ref|ZP_05835987.1| bacterial transcription antitermination protein NusG [Brucella melitensis bv. 1 str. 16M] gi|260566226|ref|ZP_05836696.1| bacterial transcription antitermination protein NusG [Brucella suis bv. 4 str. 40] gi|260754989|ref|ZP_05867337.1| transcription antitermination protein NusG [Brucella abortus bv. 6 str. 870] gi|260758205|ref|ZP_05870553.1| transcription antitermination protein NusG [Brucella abortus bv. 4 str. 292] gi|260762032|ref|ZP_05874375.1| transcription antitermination protein NusG [Brucella abortus bv. 2 str. 86/8/59] gi|260883999|ref|ZP_05895613.1| transcription antitermination protein NusG [Brucella abortus bv. 9 str. C68] gi|261222407|ref|ZP_05936688.1| transcription antitermination protein NusG [Brucella ceti B1/94] gi|261314033|ref|ZP_05953230.1| transcription antitermination protein NusG [Brucella pinnipedialis M163/99/10] gi|261317880|ref|ZP_05957077.1| transcription antitermination protein NusG [Brucella pinnipedialis B2/94] gi|261752556|ref|ZP_05996265.1| transcription antitermination protein NusG [Brucella suis bv. 5 str. 513] gi|261755214|ref|ZP_05998923.1| transcription antitermination protein NusG [Brucella suis bv. 3 str. 686] gi|261758437|ref|ZP_06002146.1| bacterial transcription antitermination protein NusG [Brucella sp. F5/99] gi|265988909|ref|ZP_06101466.1| transcription antitermination protein NusG [Brucella pinnipedialis M292/94/1] gi|265991323|ref|ZP_06103880.1| transcription antitermination protein NusG [Brucella melitensis bv. 1 str. Rev.1] gi|265995160|ref|ZP_06107717.1| transcription antitermination protein NusG [Brucella melitensis bv. 3 str. Ether] gi|265998373|ref|ZP_06110930.1| transcription antitermination protein NusG [Brucella ceti M490/95/1] gi|294852584|ref|ZP_06793257.1| transcription termination/antitermination factor NusG [Brucella sp. NVSL 07-0026] gi|297248553|ref|ZP_06932271.1| transcription termination/antitermination factor NusG [Brucella abortus bv. 5 str. B3196] gi|306844153|ref|ZP_07476747.1| transcription termination/antitermination factor NusG [Brucella sp. BO1] gi|17982681|gb|AAL51925.1| transcription antitermination protein nusg [Brucella melitensis bv. 1 str. 16M] gi|23348088|gb|AAN30168.1| transcription antitermination protein NusG [Brucella suis 1330] gi|62196291|gb|AAX74591.1| NusG, transcription antitermination protein NusG [Brucella abortus bv. 1 str. 9-941] gi|82616182|emb|CAJ11225.1| Bacterial transcription antitermination protein NusG:KOW:NGN:KOW (Kyprides, Ouzounis, Woese) motif [Brucella melitensis biovar Abortus 2308] gi|148371598|gb|ABQ61577.1| transcription termination/antitermination factor NusG [Brucella ovis ATCC 25840] gi|161336015|gb|ABX62320.1| transcription termination/antitermination factor NusG [Brucella canis ATCC 23365] gi|163674236|gb|ABY38347.1| transcription termination/antitermination factor NusG [Brucella suis ATCC 23445] gi|189019967|gb|ACD72689.1| Bacterial transcription antitermination protein NusG [Brucella abortus S19] gi|225617722|gb|EEH14767.1| transcription termination/antitermination factor NusG [Brucella ceti str. Cudo] gi|225641110|gb|ACO01024.1| transcription termination/antitermination factor NusG [Brucella melitensis ATCC 23457] gi|237788965|gb|EEP63176.1| transcription termination/antitermination factor NusG [Brucella abortus str. 2308 A] gi|255999833|gb|ACU48232.1| transcription antitermination protein NusG [Brucella microti CCM 4915] gi|260095754|gb|EEW79631.1| bacterial transcription antitermination protein NusG [Brucella abortus NCTC 8038] gi|260151571|gb|EEW86665.1| bacterial transcription antitermination protein NusG [Brucella melitensis bv. 1 str. 16M] gi|260155744|gb|EEW90824.1| bacterial transcription antitermination protein NusG [Brucella suis bv. 4 str. 40] gi|260668523|gb|EEX55463.1| transcription antitermination protein NusG [Brucella abortus bv. 4 str. 292] gi|260672464|gb|EEX59285.1| transcription antitermination protein NusG [Brucella abortus bv. 2 str. 86/8/59] gi|260675097|gb|EEX61918.1| transcription antitermination protein NusG [Brucella abortus bv. 6 str. 870] gi|260873527|gb|EEX80596.1| transcription antitermination protein NusG [Brucella abortus bv. 9 str. C68] gi|260920991|gb|EEX87644.1| transcription antitermination protein NusG [Brucella ceti B1/94] gi|261297103|gb|EEY00600.1| transcription antitermination protein NusG [Brucella pinnipedialis B2/94] gi|261303059|gb|EEY06556.1| transcription antitermination protein NusG [Brucella pinnipedialis M163/99/10] gi|261738421|gb|EEY26417.1| bacterial transcription antitermination protein NusG [Brucella sp. F5/99] gi|261742309|gb|EEY30235.1| transcription antitermination protein NusG [Brucella suis bv. 5 str. 513] gi|261744967|gb|EEY32893.1| transcription antitermination protein NusG [Brucella suis bv. 3 str. 686] gi|262552841|gb|EEZ08831.1| transcription antitermination protein NusG [Brucella ceti M490/95/1] gi|262766273|gb|EEZ12062.1| transcription antitermination protein NusG [Brucella melitensis bv. 3 str. Ether] gi|263002107|gb|EEZ14682.1| transcription antitermination protein NusG [Brucella melitensis bv. 1 str. Rev.1] gi|263093879|gb|EEZ17830.1| bacterial transcription antitermination protein NusG [Brucella melitensis bv. 2 str. 63/9] gi|264661106|gb|EEZ31367.1| transcription antitermination protein NusG [Brucella pinnipedialis M292/94/1] gi|294821173|gb|EFG38172.1| transcription termination/antitermination factor NusG [Brucella sp. NVSL 07-0026] gi|297175722|gb|EFH35069.1| transcription termination/antitermination factor NusG [Brucella abortus bv. 5 str. B3196] gi|306275596|gb|EFM57328.1| transcription termination/antitermination factor NusG [Brucella sp. BO1] gi|326409270|gb|ADZ66335.1| Bacterial transcription antitermination protein NusG [Brucella melitensis M28] gi|326538979|gb|ADZ87194.1| transcription termination/antitermination factor NusG [Brucella melitensis M5-90] Length = 175 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+ Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175 >gi|56459451|ref|YP_154732.1| transcription antiterminator NusG [Idiomarina loihiensis L2TR] gi|56178461|gb|AAV81183.1| Transcription antiterminator NusG [Idiomarina loihiensis L2TR] Length = 179 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 3/178 (1%) Query: 1 MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M+ RWY+VQ +S E + ES+ + G++ EI +P E VV +R G + SER Sbjct: 1 MSDKKRWYVVQAFSGYEARVSESLKEHIKMHGMEDKFGEILVPKEEVVEMRGGVRRKSER 60 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRP 117 +FFPGYVL++ M + +H IK P+V+GF+G + P+P++ E + I+++++ + +P Sbjct: 61 KFFPGYVLVEMDMDEDAWHLIKSVPRVLGFIGGSSDRPTPISKKEADAILDRLQDSADKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EKSRV V V IFGR TPVEL + Q+EK Sbjct: 121 KPKTLFEPGEVVRVNDGPFADFNGTVEEVDYEKSRVTVSVSIFGRATPVELEFGQIEK 178 >gi|212634816|ref|YP_002311341.1| transcription antitermination protein NusG [Shewanella piezotolerans WP3] gi|212556300|gb|ACJ28754.1| Transcription antitermination protein NusG [Shewanella piezotolerans WP3] Length = 183 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVCKSLNEHIKMHSMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK Sbjct: 129 MFEAGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182 >gi|209696271|ref|YP_002264201.1| transcription antitermination protein NusG [Aliivibrio salmonicida LFI1238] gi|208010224|emb|CAQ80555.1| transcription antitermination protein NusG [Aliivibrio salmonicida LFI1238] Length = 181 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 119/174 (68%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVSQSLREYIKMHNMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ ++ ++ P+V+GF+G + P+P+TD E + I+N+++ A + P Sbjct: 67 GYVLVQMIMNDESWYLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLQQASEAPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG V+NVD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEAGEVVRVTEGPFADFNGTVENVDYEKSRIKVSVSIFGRATPVELEFSQVEK 180 >gi|312200033|ref|YP_004020094.1| NusG antitermination factor [Frankia sp. EuI1c] gi|311231369|gb|ADP84224.1| NusG antitermination factor [Frankia sp. EuI1c] Length = 261 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 2/174 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+S ++ + +I +P E V V+ G++ ++ +PGY Sbjct: 88 WYVIHSYAGYENKVKTNLETRISSLNMEDYIFQIEVPLEEVPVVKNGKRQMVTQKKYPGY 147 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVSSVF 122 + ++ +TD+ + +++TP V GF+G PSP+ E+ I+ + V Sbjct: 148 IYVRMDLTDQSWSAVRNTPGVTGFVGLTNKPSPLRREEVFSILVPPAKKEKKVETVKVQE 207 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+VGE V V DGPFA+ + ++ + R+ V V IFGR TPVEL +NQV KI Sbjct: 208 FDVGESVTVMDGPFATLPATISEINVDAQRLKVLVSIFGRETPVELQFNQVAKI 261 >gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284066137|gb|ADB77075.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160] Length = 272 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 13/185 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ ++ + +I +P+E V ++ G++ R+ PGY Sbjct: 88 WYVIHSYAGYENKVKTNLESRIQSLDMEDYIFQIEVPTEEVTEIKNGKRTQVNRKKLPGY 147 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 +L++ + D+ + +++TP V GF+G PSP++ E+ ++ + Sbjct: 148 LLVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLSIDEVVSLLAPAATPQAARTTETTST 207 Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR TPVEL++N Sbjct: 208 TTAAAPTTVVDFEVGESVTVMDGPFATLPATINEINAEQQKLQVLVSIFGRETPVELSFN 267 Query: 172 QVEKI 176 QV+KI Sbjct: 268 QVQKI 272 >gi|325203246|gb|ADY98699.1| transcription termination/antitermination factor NusG [Neisseria meningitidis M01-240355] Length = 178 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK + R++R + +I +P E+VV +R GRK SER+ Sbjct: 1 MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD +H +K TP+V GF+G P+P++ E E I+ QV+ +++P Sbjct: 61 YPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQKEAEIILQQVQTGIEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG++V V++GPFA FNG+V+ V+ E++++ V V IFGR TPVEL ++QVEKI Sbjct: 121 KVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177 >gi|317126842|ref|YP_004093124.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315471790|gb|ADU28393.1| NusG antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 177 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ RL + + + +P E V+ G+ ++ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRLESMDMSDKIFRVLVPVEEETEVKNGKSKQVTKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYV+++ +MTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V+ P Sbjct: 61 FPGYVIVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVEGILRQMG--VEEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V +GPFA+F G V+++ +K ++ V V +FGR TPVEL + QVEK+ Sbjct: 119 KADIDFELKESVKVKEGPFANFIGTVEDIHADKQKLKVHVNMFGRETPVELDFTQVEKL 177 >gi|255019485|ref|ZP_05291581.1| Transcription antitermination protein NusG [Acidithiobacillus caldus ATCC 51756] gi|254971080|gb|EET28546.1| Transcription antitermination protein NusG [Acidithiobacillus caldus ATCC 51756] Length = 175 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 115/175 (65%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V +S+ EKK I R R GL+ EI +P E VV +R G+K +S+R F+P Sbjct: 1 MRWYVVHAFSSFEKKVQAEIRERAKREGLEDQFGEILVPVEEVVEMRNGQKTSSQRMFYP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K TP+V GF+G P P++++E I+++++ V++P Sbjct: 61 GYVLVQMEMNDQTWHLVKHTPRVTGFVGGSVGKPHPLSEAEANAILDRIKEGVEKPRPKF 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ GE+V V DGPF FNG+V+ V+ EKS++ V V IFGR TPVEL + QVEKI Sbjct: 121 SFDAGEQVRVIDGPFKDFNGVVEEVNYEKSKLRVSVTIFGRSTPVELDFGQVEKI 175 >gi|254719303|ref|ZP_05181114.1| transcription antitermination protein NusG [Brucella sp. 83/13] gi|265984304|ref|ZP_06097039.1| transcription antitermination protein NusG [Brucella sp. 83/13] gi|306838948|ref|ZP_07471773.1| transcription termination/antitermination factor NusG [Brucella sp. NF 2653] gi|306840285|ref|ZP_07473058.1| transcription termination/antitermination factor NusG [Brucella sp. BO2] gi|264662896|gb|EEZ33157.1| transcription antitermination protein NusG [Brucella sp. 83/13] gi|306289740|gb|EFM60926.1| transcription termination/antitermination factor NusG [Brucella sp. BO2] gi|306405981|gb|EFM62235.1| transcription termination/antitermination factor NusG [Brucella sp. NF 2653] Length = 175 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNG+V+ VDEE++R+ VEV IFGR TPV+L Y QV+K+ Sbjct: 120 VSFEIGENVRVSDGPFASFNGVVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175 >gi|56477582|ref|YP_159171.1| transcription antitermination protein NusG [Aromatoleum aromaticum EbN1] gi|56313625|emb|CAI08270.1| transcription antitermination protein [Aromatoleum aromaticum EbN1] Length = 177 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWY+V YS EK ++ R++RSG+ +I +P E VV ++ G+K SER+F Sbjct: 1 MTKRWYVVHAYSGFEKSVQRALVDRINRSGMQDFFGQILVPVEEVVEMKSGQKSISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D+ +H +K TPKV GF+G PSP+++ E+E IM Q++ V++P Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPSPISEKEVEKIMQQMQEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +E+GE V V +GPF F+G V++V+ +KS++ V V IFGR TPVEL ++QVEK Sbjct: 121 KVLWELGEVVRVKEGPFTDFHGAVEDVNYDKSKLRVSVTIFGRATPVELDFSQVEK 176 >gi|308171992|ref|YP_003918697.1| transcription antitermination factor [Bacillus amyloliquefaciens DSM 7] gi|307604856|emb|CBI41227.1| transcription antitermination factor [Bacillus amyloliquefaciens DSM 7] gi|328910063|gb|AEB61659.1| transcription antitermination factor [Bacillus amyloliquefaciens LL3] Length = 177 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRMGMDERK- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 120 -TDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|119773342|ref|YP_926082.1| transcription antitermination protein NusG [Shewanella amazonensis SB2B] gi|119765842|gb|ABL98412.1| transcription antitermination protein nusG [Shewanella amazonensis SB2B] Length = 183 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ E+ +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVAKSLVEHIKMHGMEQYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P+TD E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPITDREADAILRRLQETTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPFA FNG V+ VD +KSRV V V+IFGR TPVEL +NQVEK Sbjct: 129 MYEPGEVVRVVDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFNQVEK 182 >gi|269962515|ref|ZP_06176863.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3] gi|269832710|gb|EEZ86821.1| transcription antitermination protein NusG [Vibrio harveyi 1DA3] Length = 182 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHAMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPRT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MYEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|194291040|ref|YP_002006947.1| transcription antitermination protein nusg [Cupriavidus taiwanensis LMG 19424] gi|193224875|emb|CAQ70886.1| transcription termination factor [Cupriavidus taiwanensis LMG 19424] Length = 193 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193 >gi|322513223|ref|ZP_08066349.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinobacillus ureae ATCC 25976] gi|322120999|gb|EFX92840.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinobacillus ureae ATCC 25976] Length = 187 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFP Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E E I+N+V+ ++P Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREAERILNRVQETAEKPRHRN 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 132 EYQPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185 >gi|300702760|ref|YP_003744361.1| transcription termination factor [Ralstonia solanacearum CFBP2957] gi|299070422|emb|CBJ41717.1| transcription termination factor [Ralstonia solanacearum CFBP2957] Length = 194 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFPG Sbjct: 21 RWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFPG 80 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ MTD+ +H +K+T KV GF+G G P+P++ E++ IM Q++ V++P Sbjct: 81 YVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKTL 140 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 141 FEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|260774619|ref|ZP_05883531.1| transcription antitermination protein NusG [Vibrio metschnikovii CIP 69.14] gi|260610413|gb|EEX35620.1| transcription antitermination protein NusG [Vibrio metschnikovii CIP 69.14] Length = 182 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHAMEEHFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMVMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V++GPFA FNG V+ D +KSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MFEVGEVVRVTEGPFADFNGTVEETDYDKSRLKVSVSIFGRATPVELEFGQVEKL 181 >gi|218710885|ref|YP_002418506.1| transcription antitermination protein NusG [Vibrio splendidus LGP32] gi|218323904|emb|CAV20265.1| transcription antitermination protein NusG [Vibrio splendidus LGP32] Length = 182 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ ++ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGYEGRVSQSLREHIKMHDMEEFFGDVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSIPRVMGFIGGTSDRPAPITDKEADAILNRLEKASESPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V+DGPFA FNG V+ VD EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 127 MFEAGEVVRVNDGPFADFNGTVEEVDYEKSRIKVSVSIFGRATPVELEFGQVEKL 181 >gi|330432328|gb|AEC17387.1| transcription antitermination protein NusG [Gallibacterium anatis UMN179] Length = 183 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + + + ++ L E+ +P+E VV G++ SER+FFP Sbjct: 8 KRWYVLQAFSGFESRVATVLREYIKLHNMEELFGEVLVPTEEVVENVGGKRRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G ++P+P+++ E E I+N++E + +P Sbjct: 68 GYVLVQMVMNDDTWHLVRSVPRVMGFIGGTPDHPAPISNREAEMILNRLEQSSDKPRPKT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ GE V V +GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++QVEK+ Sbjct: 128 MFQPGEEVRVKEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKL 182 >gi|299821040|ref|ZP_07052928.1| transcription termination/antitermination factor NusG [Listeria grayi DSM 20601] gi|299816705|gb|EFI83941.1| transcription termination/antitermination factor NusG [Listeria grayi DSM 20601] Length = 177 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMTDQIFRVIVPEEEETEVKNGKTKTLKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ + + Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTALLPEEAERILKSMG--MNDR 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI Sbjct: 119 TVEADFEVGETVMVKEGPFAEFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177 >gi|332037819|gb|EGI74269.1| transcription antitermination protein NusG [Pseudoalteromonas haloplanktis ANT/505] Length = 187 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG Sbjct: 13 RWYVVQAFSGYEKRVAQTLIEHIKIEGLESSFGEILVPTEEVVEMRAGQKRKSERKFFPG 72 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ M D +H + T +V+GF+G + P+P++ E E I+N+++ + P + Sbjct: 73 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISPKEAERILNRLQENAEAPKPATL 132 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE Sbjct: 133 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 184 >gi|261854938|ref|YP_003262221.1| NusG antitermination factor [Halothiobacillus neapolitanus c2] gi|261835407|gb|ACX95174.1| NusG antitermination factor [Halothiobacillus neapolitanus c2] Length = 177 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E +++ R+ R GL L EI +PSE VV +R G K SER+F Sbjct: 1 MAMRWYVVQAFSQFENSVKKALEERIEREGLQSLFGEILVPSEEVVEMRDGVKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD+ +H + P+V+GF+G +G P+P++ E E IM +V+ + +P Sbjct: 61 YPGYVLVQIDMTDEAWHLVNSVPRVLGFVGDSGGKPTPISSKEAEAIMTRVKDSTDKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+VGE V V DGPF F G+V+ V+ EKSR+HV V IFGR TPVEL ++QV K Sbjct: 121 KTLFDVGEMVRVCDGPFNDFTGVVEEVNYEKSRLHVAVSIFGRSTPVELGFDQVAK 176 >gi|320108601|ref|YP_004184191.1| NusG antitermination factor [Terriglobus saanensis SP1PR4] gi|319927122|gb|ADV84197.1| NusG antitermination factor [Terriglobus saanensis SP1PR4] Length = 209 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 118/174 (67%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+ YS E+K ES+ R+ GL H + + IP+E V VR G+K ER F PG Sbjct: 35 KWYIIHAYSGFERKVKESLESRIQAYGLQHKIGRVMIPTEPVTEVRNGKKYVIERVFLPG 94 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ + + ++HTIK+TP+V GFLGTG++P +++ E+ I+ + + + +P V F Sbjct: 95 YVLVEMDLDNDLWHTIKNTPRVTGFLGTGDSPVALSEQEVSSIIFRTDVSKDKPKLKVKF 154 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 E GE V ++DGPFA+FNG V +V+E+K + V V IFGR TPVE+ +++V+KIV Sbjct: 155 EKGEMVKITDGPFANFNGAVDDVNEDKQTLKVMVSIFGRSTPVEIEFSKVDKIV 208 >gi|33152872|ref|NP_874225.1| transcription antitermination protein NusG [Haemophilus ducreyi 35000HP] gi|33149097|gb|AAP96614.1| transcription antitermination protein [Haemophilus ducreyi 35000HP] Length = 187 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FFP Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVENVGGKRRRTERKFFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+ ++ E + I+N+V+ +P Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAAISKREADRILNRVQETADKPRHRN 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 132 EYHPGENVRVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185 >gi|118579107|ref|YP_900357.1| NusG antitermination factor [Pelobacter propionicus DSM 2379] gi|118501817|gb|ABK98299.1| transcription antitermination protein nusG [Pelobacter propionicus DSM 2379] Length = 175 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS E K ++ R+ G++ EI IPSE VV ++KG K S R+F Sbjct: 1 MSKKWYGVHTYSGFENKVRLNLHERIKNEGMEEHFEEILIPSETVVELKKGEKRTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+K + D+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P Sbjct: 61 FPGYILVKMELNDETWHIVKETAKVTGFVG-GNTPFPIADEEVNKITRRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F+GIV++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VLFEVGETVRVIDGPFLNFSGIVEDVKPDKGKLRVTVTIFGRATPVELEFMQVEK 174 >gi|52783957|ref|YP_089786.1| transcription antitermination protein NusG [Bacillus licheniformis ATCC 14580] gi|163119187|ref|YP_077386.2| transcription antitermination protein NusG [Bacillus licheniformis ATCC 14580] gi|52346459|gb|AAU39093.1| NusG [Bacillus licheniformis ATCC 14580] gi|145902690|gb|AAU21748.2| transcription antitermination factor [Bacillus licheniformis ATCC 14580] Length = 177 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++ Sbjct: 61 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRMG--LEER 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+ Sbjct: 119 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 177 >gi|113869449|ref|YP_727938.1| transcription antitermination protein NusG [Ralstonia eutropha H16] gi|113528225|emb|CAJ94570.1| transcription antitermination protein [Ralstonia eutropha H16] Length = 193 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193 >gi|153009272|ref|YP_001370487.1| transcription antitermination protein NusG [Ochrobactrum anthropi ATCC 49188] gi|239832136|ref|ZP_04680465.1| transcription termination/antitermination factor NusG [Ochrobactrum intermedium LMG 3301] gi|151561160|gb|ABS14658.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188] gi|239824403|gb|EEQ95971.1| transcription termination/antitermination factor NusG [Ochrobactrum intermedium LMG 3301] Length = 175 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSELIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYVLVRATLTDAVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+ Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175 >gi|322418352|ref|YP_004197575.1| NusG antitermination factor [Geobacter sp. M18] gi|320124739|gb|ADW12299.1| NusG antitermination factor [Geobacter sp. M18] Length = 175 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY V YS E K S+ R+ ++ EI IP E VV ++KG K S R+F Sbjct: 1 MAHKWYGVHTYSGFENKVRLSLAERIKNLEMEEFFGEILIPCETVVELKKGEKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D +H +K+T KV GF+G G NP P+ D E+ I ++E ++P Sbjct: 61 FPGYILVNMELNDDTWHVVKETAKVTGFVG-GNNPFPIPDEEVNKITKRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPF +F+G+V++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VLFEVGETVRVIDGPFLNFSGVVEDVKPDKGKLKVMVSIFGRATPVELEFMQVEK 174 >gi|73542878|ref|YP_297398.1| transcription antitermination protein NusG [Ralstonia eutropha JMP134] gi|72120291|gb|AAZ62554.1| transcription antitermination protein nusG [Ralstonia eutropha JMP134] Length = 193 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 193 >gi|119468180|ref|ZP_01611306.1| component in transcription antitermination; couples translation and transcription [Alteromonadales bacterium TW-7] gi|119448173|gb|EAW29437.1| component in transcription antitermination; couples translation and transcription [Alteromonadales bacterium TW-7] Length = 185 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S EK+ +++ + GL+ EI +P+E VV +R G+K SER+FFPG Sbjct: 11 RWYVVQAFSGYEKRVAQTLTEHIKIEGLEESFGEILVPTEEVVEMRAGQKRKSERKFFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ M D +H + T +V+GF+G + P+P++ E + I+N+++ + P + Sbjct: 71 YVLVQMDMNDASWHLVNSTERVMGFIGGTSDRPAPISSKEADRILNRLQENAEAPKPATL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182 >gi|229815830|ref|ZP_04446154.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM 13280] gi|229808525|gb|EEP44303.1| hypothetical protein COLINT_02878 [Collinsella intestinalis DSM 13280] Length = 179 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ RWY+V YS E + + R+ G+ + +I IP+E V +++G ++ + + Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTEHVTELKEGGKRDEKDVK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGSSAPKR 120 Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +V EVG + V++GP A F+G V V E+ +V V ++IFGR TPVEL + Q+E Sbjct: 121 AVVDIEVGTSIRVTNGPLADFDGKVSEVMPEQGKVKVTLLIFGRETPVELGFEQIE 176 >gi|16272657|ref|NP_438875.1| transcription antitermination protein NusG [Haemophilus influenzae Rd KW20] gi|1171875|sp|P43916|NUSG_HAEIN RecName: Full=Transcription antitermination protein nusG gi|1573719|gb|AAC22374.1| transcription antitermination protein (nusG) [Haemophilus influenzae Rd KW20] Length = 185 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP Sbjct: 10 KRWYVLQAFSGFESRVALTLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P Sbjct: 70 GYVLVEMEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRN 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE V V++GPFA FNG V+ VD EK R+ V V +FGR TPVEL + QVEKI Sbjct: 130 EYHPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKI 184 >gi|258543809|ref|ZP_05704043.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258520938|gb|EEV89797.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 178 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY++Q YS E + ++ R+ R GL +I IPSE VV ++ G+K NS+R+F Sbjct: 1 MSKQWYVLQTYSQFEGQVKRALMERIEREGLQDSFGQILIPSEEVVEIKDGKKRNSQRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVS 119 FP YVL++ M D +H ++ P+V GF+G E+E I+ ++E +++P Sbjct: 61 FPNYVLVEMEMNDTTWHVVRSIPRVSGFVGGTAESPAPIPAHEVEAILRRIEEGIEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FEVGE V + DGPFA F G V+ V EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 KTLFEVGEEVRIIDGPFAEFMGTVEEVMYEKSRLKVSVLIFGRPTPVELEFHQVEK 176 >gi|269796269|ref|YP_003315724.1| transcription antitermination protein nusG [Sanguibacter keddieii DSM 10542] gi|269098454|gb|ACZ22890.1| transcription antitermination protein nusG [Sanguibacter keddieii DSM 10542] Length = 273 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY Sbjct: 93 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKIVRRVRIPGY 152 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +TD+ + ++ TP V GF+G P P+T +E+ ++ + A Sbjct: 153 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTQNEVFGMLAPLIAPKAEAGAKGSGS 212 Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL+++QV K Sbjct: 213 APAIEVDFTVGESVTVTDGPFDTLPATISEINAEGQKLKVLVSIFGRETPVELSFSQVAK 272 Query: 176 I 176 I Sbjct: 273 I 273 >gi|170718763|ref|YP_001783416.1| transcription antitermination protein NusG [Haemophilus somnus 2336] gi|168826892|gb|ACA32263.1| NusG antitermination factor [Haemophilus somnus 2336] Length = 184 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP Sbjct: 8 KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D + ++ P+V+GF+G + P+P++ E E I+N+V+ +P Sbjct: 68 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181 >gi|113460339|ref|YP_718400.1| transcription antitermination protein NusG [Haemophilus somnus 129PT] gi|112822382|gb|ABI24471.1| transcription antitermination protein nusG [Haemophilus somnus 129PT] Length = 184 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV G++ SER++FP Sbjct: 8 KRWYVLQAFSGFEGRVAATLREYIKLHQMEEQFGEVLVPTEEVVENVGGKRRKSERKYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D + ++ P+V+GF+G + P+P++ E E I+N+V+ +P Sbjct: 68 GYVLVQMEMNDYTWQLVRSVPRVMGFIGGTPDKPAPISQKEAERILNRVQETADKPRHRK 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE + V++GPFA FNG V+ VD +K R+ V V+IFGR TPVEL ++QVEK Sbjct: 128 EFQPGEEIRVTEGPFADFNGTVEEVDYDKGRLKVSVLIFGRATPVELEFSQVEK 181 >gi|159042815|ref|YP_001531609.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12] gi|157910575|gb|ABV92008.1| NusG antitermination factor [Dinoroseobacter shibae DFL 12] Length = 177 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKHAVAEAGLEDDIEEVLVPTEEVIEVRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ MTD+ YH I +V GFLG P + D E+ I+N+VE + P S Sbjct: 61 MPGYVLVRMEMTDQGYHLINSINRVTGFLGPQGRPMAMRDDEVNQILNRVEEGQEAPRSL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F++GE+V V+DGPF F+G V+ VD++ +R+ V V IFGR TPVEL + QV K Sbjct: 121 ITFDIGEQVNVTDGPFEGFSGSVEEVDDDNNRLKVTVSIFGRATPVELEFTQVTK 175 >gi|256827385|ref|YP_003151344.1| transcription antitermination protein nusG [Cryptobacterium curtum DSM 15641] gi|256583528|gb|ACU94662.1| transcription antitermination protein nusG [Cryptobacterium curtum DSM 15641] Length = 178 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 2/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M +WY++ YS E K +++ R+ GL++ V +I IP E V ++ G R+V S+++ Sbjct: 1 MAKKWYVLHTYSGYENKVKKNLESRIETMGLENNVFDIQIPMETVTEIKDGGRRVESDKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPV 118 PGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM + A ++ V Sbjct: 61 VLPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQANPAPLTREEYNKIMKRTDHADTRKAV 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V GP A F+G+V V E ++V V V IFGR TPVEL+++QV ++ Sbjct: 121 VTSDLAEGQTVKVVSGPLADFDGVVSEVSPEANKVKVLVSIFGRETPVELSFDQVTRL 178 >gi|154684619|ref|YP_001419780.1| transcription antitermination protein NusG [Bacillus amyloliquefaciens FZB42] gi|154350470|gb|ABS72549.1| NusG [Bacillus amyloliquefaciens FZB42] Length = 177 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERK- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 120 -TDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|302390620|ref|YP_003826441.1| transcription antitermination protein nusG [Thermosediminibacter oceani DSM 16646] gi|302201248|gb|ADL08818.1| transcription antitermination protein nusG [Thermosediminibacter oceani DSM 16646] Length = 174 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++ YS E K ++ R+ G+ + + +P E V ++ G+K ++R+ Sbjct: 1 MSKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRVLVPVEEEVEIKNGKKKVTQRKI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ ++TD +H +++TP V GF+GTG P P+ +SEI+ I+ Q+ ++ P Sbjct: 61 FPGYVLVEMIVTDDSWHVVRNTPGVTGFVGTGNKPIPLQESEIKAILKQMG--IEEPKPK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +V + V V GPF +F G V ++ EK +V V + +FGR TP+EL +NQVEKI Sbjct: 119 LDIDVDQNVKVVSGPFENFVGKVLEINHEKQKVKVLISMFGRETPIELDFNQVEKI 174 >gi|295106904|emb|CBL04447.1| transcription antitermination protein nusG [Gordonibacter pamelaeae 7-10-1-b] Length = 180 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ +WY++ YS E K +++ R+ GL++ V I IP+E V +++G R+V SE++ Sbjct: 1 MSKKWYVLHTYSGYENKVKKNLETRIETMGLENNVFAIEIPTEMVTEIKEGGRRVESEKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D+ + +++TP V GF+G+ NP+P+T E IM + Sbjct: 61 VFPGYVLVRMELDDRSWAAVRNTPGVTGFVGSQGNPAPLTRDEYNKIMGMRSDKNRPGTP 120 Query: 120 SV---FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V GP A F+G+V V + +V V V IFGR TPVEL+++Q+ KI Sbjct: 121 KKTSSSIEVGQSVKVVSGPLAEFDGVVSEVSPDAGKVKVLVSIFGRETPVELSFDQIAKI 180 >gi|118594012|ref|ZP_01551359.1| transcription antitermination protein NusG [Methylophilales bacterium HTCC2181] gi|118439790|gb|EAV46417.1| transcription antitermination protein NusG [Methylophilales bacterium HTCC2181] Length = 178 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY VQ YS EK +S+ R+ ++ L EI +P E VV ++ G K SERR Sbjct: 1 MSKRWYAVQAYSGYEKIVQKSLLERIDQAKLSDQFGEILVPVEEVVEMKGGNKTLSERRL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H ++ TPKV F+G + P+P+ D E++ I+ +++ + P Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSAQKPTPIKDKEVDIILQRMDDSKVNPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGE V V DGPF F+G V+ ++ EKS++ V VVIFGR TPVEL + Q+EK V Sbjct: 121 KMTFEVGESVRVLDGPFKDFSGSVEEINYEKSKLRVSVVIFGRATPVELEFGQIEKEV 178 >gi|302382912|ref|YP_003818735.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302193540|gb|ADL01112.1| NusG antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 193 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK + I + + L+ +EI +P+E VV +R+GRKVNSER+FFP Sbjct: 16 HKWYIVHAYSNFEKKVAQHIRDQAKQRDLEECFSEILVPTEDVVEIRRGRKVNSERKFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GYVL+K +TD YH +KDTPKV GFLG G P PV++ E++ I+ VE V+RP + Sbjct: 76 GYVLVKMELTDDAYHLVKDTPKVTGFLGAAGGTKPLPVSEREVQAIIGAVEEGVERPKPT 135 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F++GE V V DGPFASF+G V++VDE+ +R+ V V IFGR TPV+L Y+QVEK Sbjct: 136 IRFDIGETVKVIDGPFASFDGQVESVDEDAARLRVAVSIFGRPTPVDLEYSQVEK 190 >gi|110833234|ref|YP_692093.1| transcription antitermination protein NusG [Alcanivorax borkumensis SK2] gi|110646345|emb|CAL15821.1| transcription antitermination protein NusG [Alcanivorax borkumensis SK2] Length = 180 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 4/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK ++ R+ ++ L I +P+E VV ++ G+K SER+F Sbjct: 1 MAKRWYVVHAYSGFEKYVKRALEERVKLRSMEELFGGILVPTEEVVEIKGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR 116 FPGYVL++ M D +H IK+TPKV+GF+G SP+T E + I+ +++ AV++ Sbjct: 61 FPGYVLVQMEMCDDSWHLIKETPKVMGFIGEDSKNPGRVSPITQKEADAILRRMDDAVEK 120 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P FE GE V V+DGPFA FNG+++ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 PKPKTLFEAGEVVRVNDGPFADFNGVIEEVNYEKSRLQVAVMIFGRSTPVELEFGQVEK 179 >gi|91791527|ref|YP_561178.1| transcription termination/antitermination factor NusG [Shewanella denitrificans OS217] gi|91713529|gb|ABE53455.1| transcription antitermination protein nusG [Shewanella denitrificans OS217] Length = 183 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +++ + ++ EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVIQAFSGYEGRVSKTLLEHIKMHNMEDYFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ V+ P + Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++QVEK Sbjct: 129 IYEPGEVVRVCDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFHQVEK 182 >gi|114764160|ref|ZP_01443398.1| transcription termination/antitermination factor NusG [Pelagibaca bermudensis HTCC2601] gi|114543312|gb|EAU46328.1| transcription termination/antitermination factor NusG [Roseovarius sp. HTCC2601] Length = 177 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ + + P + Sbjct: 61 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVESILGRVQESDEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G++++VD++ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMIESVDDDNQRLRVAVSIFGRETPVELEFTQVSK 175 >gi|114561324|ref|YP_748837.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400] gi|114332617|gb|ABI69999.1| transcription antitermination protein nusG [Shewanella frigidimarina NCIMB 400] Length = 183 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++++ + ++ EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVIQAFSGYEGRVLKTLLEHIKMHNMEEYFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++D E + I+ +++ V+ P + Sbjct: 69 GYVLVQMEMNDDSWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQDTVESPTHRI 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPFA FNG ++ VD EK+R+ V V+IFGR TPVEL +NQVEK Sbjct: 129 MYEPGEVVRVCDGPFADFNGTIEEVDYEKNRIKVSVMIFGRSTPVELDFNQVEK 182 >gi|77359188|ref|YP_338763.1| transcription antitermination factor [Pseudoalteromonas haloplanktis TAC125] gi|76874099|emb|CAI85320.1| component in transcription antitermination; couples translation and transcription [Pseudoalteromonas haloplanktis TAC125] Length = 185 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 80/172 (46%), Positives = 116/172 (67%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S EK+ ++I + GL+ E+ +P+E V+ +R G+K SER+FFPG Sbjct: 11 RWYVVQAFSGYEKRVAQTILEHIKIKGLEESFGEVLVPTEEVIEMRAGQKRKSERKFFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVLI+ M DK +H + T +V+GF+G + P+P++ E E I+N+++ + P + Sbjct: 71 YVLIQMDMNDKSWHLVNSTERVMGFIGGTSDRPAPISAKEAERILNRLQENAEAPKPATL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE GE V V+DGPFA F+G+V+ VD EKSRV V V+IFGR TPVEL + QVE Sbjct: 131 FEPGEVVRVTDGPFADFSGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182 >gi|156744234|ref|YP_001434363.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941] gi|156235562|gb|ABU60345.1| NusG antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 194 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +++ R+ + + + +P+E + ++ G++ +++ FPG Sbjct: 22 RWYVIHTYSGYENKVKQNLLHRIETMEMRDQIFNVIVPTEEEIEIKNGQRRTVQKKVFPG 81 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ M D ++ +++TP V F+G G P+P+ + E++ I+ Q+E + P V + Sbjct: 82 YVLVQMKMNDNSWYVVRNTPGVTSFVGHGNKPTPLEEEEVKAILKQMEQ--EAPKVKVSY 139 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +VG+ V ++DGPF F GIV +D E+ RV V V FGR PVEL + QV ++V Sbjct: 140 QVGQAVKITDGPFTDFEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 193 >gi|257063593|ref|YP_003143265.1| transcription antitermination protein nusG [Slackia heliotrinireducens DSM 20476] gi|256791246|gb|ACV21916.1| transcription antitermination protein nusG [Slackia heliotrinireducens DSM 20476] Length = 178 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M +WY++ YS E K +++ R+ GL+ + +I IP+E V +++G R+V SE++ Sbjct: 1 MAKKWYVLHTYSGYENKVKQTLESRVEMMGLEDSIVDIQIPTEMVTEIKEGGRRVESEKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M ++ + +++TP V GF+G P P+T E IM + P Sbjct: 61 VFPGYVLVRMEMNNQNWSVVRNTPGVTGFVGGQGEPEPLTREEYNKIMKRTSVKAGAPKK 120 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S EVG+ V V+ GP A F+G V V E +V V V IFGR TPVEL+++QV +I Sbjct: 121 TSTSLEVGQSVKVTSGPLADFDGTVSEVSPEAGKVKVLVSIFGRETPVELSFDQVARI 178 >gi|89100743|ref|ZP_01173598.1| transcription antitermination protein NusG [Bacillus sp. NRRL B-14911] gi|89084560|gb|EAR63706.1| transcription antitermination protein NusG [Bacillus sp. NRRL B-14911] Length = 177 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ + + + +P E ++ G+K +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMAMQDKIFRVIVPEEEETDIKNGKKKVVKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ I+ ++ V Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVNVILKRMG--VDEK 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V++GPFA+F G ++ +D++K+++ V V +FGR TPVEL + Q+EK+ Sbjct: 119 RVDIDFEIGETVKVNEGPFANFTGSIEEIDKDKAKIKVLVNMFGRETPVELDFTQIEKL 177 >gi|94312270|ref|YP_585480.1| transcription antitermination protein NusG [Cupriavidus metallidurans CH34] gi|93356122|gb|ABF10211.1| transcription termination factor [Cupriavidus metallidurans CH34] Length = 193 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+ + I +PSE VV ++ G K +ERRFFP Sbjct: 19 KRWYVVHAYSGMEKSVQRALQERIERAEMQDKFGRILVPSEEVVEIKGGHKSVTERRFFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P Sbjct: 79 GYVLVEMEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKT 138 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 139 LFEVGEMVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 193 >gi|126734758|ref|ZP_01750504.1| transcription antitermination protein NusG [Roseobacter sp. CCS2] gi|126715313|gb|EBA12178.1| transcription antitermination protein NusG [Roseobacter sp. CCS2] Length = 176 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E+I + GL + E+ +P+E V+ +R+ +KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRQKADEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P + Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRATPVELEFTQVSK 175 >gi|261417593|ref|YP_003251275.1| transcription antitermination protein NusG [Geobacillus sp. Y412MC61] gi|297528468|ref|YP_003669743.1| NusG antitermination factor [Geobacillus sp. C56-T3] gi|319765251|ref|YP_004130752.1| NusG antitermination factor [Geobacillus sp. Y412MC52] gi|261374050|gb|ACX76793.1| NusG antitermination factor [Geobacillus sp. Y412MC61] gi|297251720|gb|ADI25166.1| NusG antitermination factor [Geobacillus sp. C56-T3] gi|317110117|gb|ADU92609.1| NusG antitermination factor [Geobacillus sp. Y412MC52] Length = 177 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEETETDVKNGKRKTTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177 >gi|328551802|gb|AEB22294.1| transcription antitermination protein NusG [Bacillus amyloliquefaciens TA208] Length = 177 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAEAILKRMGMDERK- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPF +F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 120 -TDIDFELNETVKVIDGPFTNFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|30249991|ref|NP_842061.1| transcription antitermination protein NusG [Nitrosomonas europaea ATCC 19718] gi|30139098|emb|CAD85962.1| nusG; Bacterial transcription antitermination [Nitrosomonas europaea ATCC 19718] Length = 177 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS EK ++ R+++ L+ EI IP E V+ ++ G+K SER+F Sbjct: 1 MSKKWYAVHTYSGFEKSVKRALKDRIAQHKLEDKFGEILIPVEEVIEIKGGQKSISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP Y+LI+ MTD+ +H +K TPKV GF+G P P++ EIE I NQV V++P Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSTQPVPISHKEIESIFNQVREGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE GE V + +GPF F+G V+ V+ +KS++ V V IFGR TPVEL ++QV+K+ Sbjct: 121 KVIFEAGEAVRIKEGPFTDFHGNVEEVNYDKSKLQVSVSIFGRPTPVELDFHQVDKV 177 >gi|325577261|ref|ZP_08147745.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Haemophilus parainfluenzae ATCC 33392] gi|301154974|emb|CBW14437.1| transcription termination factor [Haemophilus parainfluenzae T3T1] gi|325160843|gb|EGC72964.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Haemophilus parainfluenzae ATCC 33392] Length = 185 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 111/174 (63%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + + ++ E+ +P+E VV G++ SER+FFP Sbjct: 10 KRWYVLQAFSGFESRVAITLREYIKQQQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E + I+N++E + ++P Sbjct: 70 GYVLVEMAMNDDTWHLVKSVPRVMGFIGGTPDKPAPISKREADLILNRLEQSAEKPRHRK 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ GE V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 130 EYQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 183 >gi|319649130|ref|ZP_08003338.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2] gi|317388830|gb|EFV69649.1| transcription antitermination protein nusG [Bacillus sp. BT1B_CT2] Length = 179 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 3 MEKKWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 62 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++ Sbjct: 63 FPGYVLVELVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAEKILKRMG--LEER 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA F G ++ +D +K++V V V +FGR TPVEL + QV+K+ Sbjct: 121 KTEIDFELKETVKVIDGPFADFTGTIEEIDHDKNKVKVFVNMFGRETPVELEFTQVDKL 179 >gi|224827266|ref|ZP_03700360.1| NusG antitermination factor [Lutiella nitroferrum 2002] gi|224600555|gb|EEG06744.1| NusG antitermination factor [Lutiella nitroferrum 2002] Length = 177 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 87/177 (49%), Positives = 119/177 (67%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS EK +++ R+ RS + L ++ +P E VV V+ GRK SER+F Sbjct: 1 MAKRWYVVHAYSGFEKSVQKALRERIERSEVADLFGQVLVPVEEVVDVKNGRKSISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD+ +H +K TPKV GF+G P+P++ E+E IM Q++ V++P Sbjct: 61 FPGYVLVEMEMTDETWHLVKSTPKVTGFVGGTANRPAPISKKEVESIMQQMQEGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGERV V DGPF FNG V V+ E++++ V V IFGR TPVEL +NQVEK+ Sbjct: 121 KVLFEVGERVRVIDGPFNDFNGSVDEVNYERNKIRVSVQIFGRETPVELDFNQVEKL 177 >gi|210632466|ref|ZP_03297394.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279] gi|210159561|gb|EEA90532.1| hypothetical protein COLSTE_01296 [Collinsella stercoris DSM 13279] Length = 179 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 2/175 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ RWY+V YS E + + R+ G+ + +I IP+ERV +++G ++ + + Sbjct: 1 MSKRWYVVHTYSGYENRVKSDLEHRIETMGMQDRIFDIQIPTERVTELKEGGKRDEKDVK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D + +++TP V GFLG P+P++ E +M + + P Sbjct: 61 IFPGYVLVRMEMDDDAWTCVRNTPGVTGFLGGSGKPAPLSRDEYNKMMRKTDKGGAAPKR 120 Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +V EVG V V GP + F+G V V E ++V V ++IFGR TPVEL+++Q+ Sbjct: 121 AVVDIEVGTSVRVISGPLSDFDGKVSEVMPEAAKVKVTLMIFGRETPVELSFDQI 175 >gi|254714313|ref|ZP_05176124.1| transcription antitermination protein NusG [Brucella ceti M644/93/1] gi|254717750|ref|ZP_05179561.1| transcription antitermination protein NusG [Brucella ceti M13/05/1] gi|261219594|ref|ZP_05933875.1| transcription antitermination protein NusG [Brucella ceti M13/05/1] gi|261322089|ref|ZP_05961286.1| transcription antitermination protein NusG [Brucella ceti M644/93/1] gi|260924683|gb|EEX91251.1| transcription antitermination protein NusG [Brucella ceti M13/05/1] gi|261294779|gb|EEX98275.1| transcription antitermination protein NusG [Brucella ceti M644/93/1] Length = 175 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYLLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TPV+L Y QV+K+ Sbjct: 120 VSFEIGENVSVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPVDLEYGQVDKL 175 >gi|49474312|ref|YP_032354.1| transcription antitermination protein NusG [Bartonella quintana str. Toulouse] gi|49239816|emb|CAF26207.1| Transcription antitermination protein [Bartonella quintana str. Toulouse] Length = 176 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 136/176 (77%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F Sbjct: 1 MAARWYIVQAYSNFEKKIAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS Sbjct: 61 FPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPIPISDREAEQILKQVQEGVESPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+ Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176 >gi|256061327|ref|ZP_05451475.1| transcription antitermination protein NusG [Brucella neotomae 5K33] gi|261325332|ref|ZP_05964529.1| transcription antitermination protein NusG [Brucella neotomae 5K33] gi|261301312|gb|EEY04809.1| transcription antitermination protein NusG [Brucella neotomae 5K33] Length = 175 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 101/176 (57%), Positives = 134/176 (76%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL L+ +I +P+E++V VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIEAKAKQKGLSDLIEQIVVPTEKIVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD V+ IK+TPKV GFLG P PV+ E++ I+NQV+ V+RP +S Sbjct: 61 FPGYVLVRAKLTDSVFSLIKNTPKVTGFLG-DSKPVPVSQKEVDQILNQVQDGVERPKTS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V VSDGPFASFNGIV+ VDEE++R+ VEV IFGR TP++L Y QV+K+ Sbjct: 120 VSFEIGENVRVSDGPFASFNGIVQEVDEERARLKVEVSIFGRATPIDLEYGQVDKL 175 >gi|254420959|ref|ZP_05034683.1| transcription termination/antitermination factor NusG [Brevundimonas sp. BAL3] gi|196187136|gb|EDX82112.1| transcription termination/antitermination factor NusG [Brevundimonas sp. BAL3] Length = 191 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 131/176 (74%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIV YSN EKK E + + + GL+ +EI +P+E VV +R+GRKVNSER+FFP Sbjct: 14 HKWYIVNAYSNFEKKVAEQVRDQAKQQGLEDAFSEILVPTEDVVEIRRGRKVNSERKFFP 73 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GYVL+K MTD+ YH +K+TPKV GFLG G P PV++ E+++I+ QVE V+RP + Sbjct: 74 GYVLVKMEMTDQAYHLVKNTPKVTGFLGAAGGTKPLPVSEREVQNIIGQVEEGVERPKPT 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++GE+V V DGPFASF+G V++VDEE++R+ V V IFGR TPVEL Y QVEK+ Sbjct: 134 IRFDIGEKVKVIDGPFASFDGSVESVDEEQARLRVAVSIFGRATPVELEYAQVEKV 189 >gi|119478595|ref|ZP_01618517.1| transcription antitermination protein NusG [marine gamma proteobacterium HTCC2143] gi|119448430|gb|EAW29680.1| transcription antitermination protein NusG [marine gamma proteobacterium HTCC2143] Length = 176 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EKK + R+ + ++ +P+E VV +R G+K SER+F Sbjct: 1 MSKRWYVVHAYSGYEKKVANMLKERIELHKMQEKFGDVLVPTEEVVEMRGGQKRRSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D +H +K+TP+V+GF+G + P+P+T++E I+ +V + + P Sbjct: 61 FPGYVLVEMELGDDTWHLVKETPRVLGFIGGKADKPAPITEAEANTILQRV-ESGEAPKP 119 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V+ V+ EKS++HV V+IFGR TPVEL + QVEK Sbjct: 120 KTLFEPGEMVRVVDGPFNDFNGVVEEVNYEKSKLHVAVLIFGRSTPVELDFGQVEK 175 >gi|146329117|ref|YP_001210163.1| transcription termination-antitermination factor NusG [Dichelobacter nodosus VCS1703A] gi|146232587|gb|ABQ13565.1| transcription termination-antitermination factor NusG [Dichelobacter nodosus VCS1703A] Length = 178 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 110/176 (62%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++Q YS E+ ++ R+ R GL EI IP+E VV ++ +K S+ +F Sbjct: 1 MAKQWYVLQSYSQFEQYVKRALQERIEREGLQDSFGEILIPTEEVVEIKDNKKRISQHKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP-VTDSEIEHIMNQVEAAVQRPVS 119 +PGYV ++ M D +H + PKV GF+G + ++ E++ I+N+++ V++P Sbjct: 61 YPGYVFVEMEMNDTTWHVVNSIPKVSGFVGGTKESPAAISQEEVDKILNRMQEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE+GE + + DGPFA F G V+ V+ EKSR+ V V+IFGR TPVEL +NQVEK Sbjct: 121 KTLFEIGEELRIIDGPFADFTGTVEEVNYEKSRLKVSVLIFGRPTPVELEFNQVEK 176 >gi|307251013|ref|ZP_07532938.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856953|gb|EFM89084.1| Transcription antitermination protein nusG [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 187 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + ++ + ++ E+ +P+E VV GR+ +ER+FFP Sbjct: 12 MRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVPTEEVVESVGGRRRRTERKFFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E + I+N+V+ ++P Sbjct: 72 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISKREADRILNRVQETAEKPRHRK 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V++GPFA F G V+ VD EK R+ V V IFGR TPVEL + QVEK Sbjct: 132 EFQPGENVHVTEGPFADFTGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEK 185 >gi|262273344|ref|ZP_06051159.1| transcription antitermination protein NusG [Grimontia hollisae CIP 101886] gi|262222717|gb|EEY74027.1| transcription antitermination protein NusG [Grimontia hollisae CIP 101886] Length = 181 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAKSLKEHIKMHEMEDYFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H ++ P+V+GF+G + P+P++D E + I+N++E A + PV Sbjct: 67 GYVLVQMLMNDESWHLVRSVPRVMGFIGGTPDRPAPISDKEADAILNRLEKASESPVHKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V++GPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 VYEAGEVVRVTEGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180 >gi|237654008|ref|YP_002890322.1| transcription antitermination protein NusG [Thauera sp. MZ1T] gi|237625255|gb|ACR01945.1| NusG antitermination factor [Thauera sp. MZ1T] Length = 177 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 79/176 (44%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK ++ R++RSG+ +I +P E V+ +R G+K +ER+F Sbjct: 1 MSKRWYVVHAYSGFEKSVQRALIDRVNRSGMQDSFGQILVPVEEVIEMRGGQKTVTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D+ +H +K TPKV GF+G P+P+++ E+E IM Q++ V +P Sbjct: 61 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPAPISEKEVEKIMQQMQEGVDKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE V V +GPF F+G V++ + EK+++ V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEIGEVVRVKEGPFTDFHGSVEDANYEKNKLRVSVTIFGRATPVELDFAQVEK 176 >gi|167626051|ref|YP_001676345.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4] gi|167356073|gb|ABZ78686.1| NusG antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 183 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +++ + ++ E+ +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVIQAFSGYEGRVCKTLLEHIRMHEMEAYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182 >gi|297582435|ref|YP_003698215.1| NusG antitermination factor [Bacillus selenitireducens MLS10] gi|297140892|gb|ADH97649.1| NusG antitermination factor [Bacillus selenitireducens MLS10] Length = 177 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ + + I +P E V+ G+ ++ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMEMTDKIFRILVPVEEENEVKNGKSKVVTKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E + I+ Q+ V+ P Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSTGAGSKPTALLPDEADAILRQMG--VEAP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + V F++ E V V +GPFA+F G ++++ EK ++ V V +FGR TPVEL ++QVEKI Sbjct: 119 KAEVDFDLKESVKVKEGPFANFIGSIEDISAEKRKLKVHVNMFGRETPVELDFHQVEKI 177 >gi|297618398|ref|YP_003703557.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM 12680] gi|297146235|gb|ADI02992.1| NusG antitermination factor [Syntrophothermus lipocalidus DSM 12680] Length = 195 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+V YS E K ++ R++ +++ + ++ IP E V + G+K +++R F Sbjct: 23 ERRWYVVHTYSGYENKVKANLEKRVASMNMENQIFQVLIPEEDEVEYKGGQKKVTKKRIF 82 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ +MTD + T++ TP V GF+G+G P P+ E++ I+ + +P + Sbjct: 83 PGYVLVEMIMTDDSWVTVRHTPGVTGFVGSGTKPIPLQPHEVQKILKHMGMLETKP--KI 140 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V V GPF +F G+VK + ++ ++ V + +FGR TPVEL Y QVEK+ Sbjct: 141 DVEVGEYVRVKSGPFENFEGMVKEILADRGKLRVNISMFGRETPVELDYEQVEKL 195 >gi|163868084|ref|YP_001609288.1| transcription antitermination protein NusG [Bartonella tribocorum CIP 105476] gi|161017735|emb|CAK01293.1| transcription antitermination protein [Bartonella tribocorum CIP 105476] Length = 176 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 138/176 (78%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E++ I+ QV+ V+ P SS Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVDQILKQVQEGVESPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V+DGPF SFNG+V+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+ Sbjct: 121 VLFEVGEQVRVADGPFVSFNGVVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176 >gi|300114748|ref|YP_003761323.1| NusG antitermination factor [Nitrosococcus watsonii C-113] gi|300114760|ref|YP_003761335.1| NusG antitermination factor [Nitrosococcus watsonii C-113] gi|299540685|gb|ADJ29002.1| NusG antitermination factor [Nitrosococcus watsonii C-113] gi|299540697|gb|ADJ29014.1| NusG antitermination factor [Nitrosococcus watsonii C-113] Length = 177 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E++ S+ R+ R GL +I +P+E VV +R+G+K SER+F Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSMEERVRRYGLQEKFGDILVPTEEVVEMREGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D+ +H +KD P+V+GF+G + P+P+T++E E I+ ++ ++P Sbjct: 61 FPGYVLVQMEMDDETWHLVKDVPRVLGFIGGTSDKPAPITEAEAEKILERIREGAEQPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V++GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK Sbjct: 121 KVLFEPGEMVRVTEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176 >gi|71905949|ref|YP_283536.1| transcription antitermination protein NusG [Dechloromonas aromatica RCB] gi|71845570|gb|AAZ45066.1| transcription antitermination protein nusG [Dechloromonas aromatica RCB] Length = 177 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+V YS EK + +I R++R G++ I +P E VV ++ G+K SER+F Sbjct: 1 MSKRWYVVHAYSGFEKSVMRAIQERITRLGMEEKFGRILVPVEEVVEMKGGQKAISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL + M D +H +K+TPKV GF+G P+P+++ E+E IM Q++ V++P Sbjct: 61 FPGYVLCEMEMDDDSWHLVKNTPKVTGFVGGTATKPTPISEKEVEKIMQQMQEGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V +GPF F+G V++V+ EK+R+ V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEVGEVVRVKEGPFTDFHGSVEDVNYEKNRLRVSVTIFGRATPVELEFAQVEK 176 >gi|332108098|gb|EGJ09322.1| transcription antitermination protein NusG [Rubrivivax benzoatilyticus JA2] Length = 193 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFP Sbjct: 19 KRWYVVHAYSGMEKAVERNLRERIDRAGMQDKFGRILVPTEEVVELKNGKKAVTERRFFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K T KV GF+G P+P++++E+ I+NQ++ V +P V Sbjct: 79 GYVLVEMEMADDTWHLVKHTSKVTGFVGGARNRPAPISEAEVMKIVNQMQEGVDKPRPKV 138 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VGE V V +GPF FNG V+ V+ EKS+V V V IFGR T VEL ++QVEK+ Sbjct: 139 EWTVGEMVRVKEGPFTDFNGAVEEVNYEKSKVKVSVTIFGRATGVELDFSQVEKV 193 >gi|17547758|ref|NP_521160.1| transcription antitermination protein NusG [Ralstonia solanacearum GMI1000] gi|83749362|ref|ZP_00946358.1| NusG [Ralstonia solanacearum UW551] gi|207721923|ref|YP_002252361.1| transcription antitermination protein [Ralstonia solanacearum MolK2] gi|207744563|ref|YP_002260955.1| transcription antitermination protein [Ralstonia solanacearum IPO1609] gi|17430063|emb|CAD16748.1| probable transcription antitermination protein [Ralstonia solanacearum GMI1000] gi|83723987|gb|EAP71169.1| NusG [Ralstonia solanacearum UW551] gi|206587093|emb|CAQ17677.1| transcription antitermination protein [Ralstonia solanacearum MolK2] gi|206595969|emb|CAQ62896.1| transcription antitermination protein [Ralstonia solanacearum IPO1609] Length = 194 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFP Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G G P+P++ E++ IM Q++ V++P Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|56698338|ref|YP_168711.1| transcription termination/antitermination factor NusG [Ruegeria pomeroyi DSS-3] gi|56680075|gb|AAV96741.1| transcription termination/antitermination factor NusG [Ruegeria pomeroyi DSS-3] Length = 177 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRASVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDQGYHLINTINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GERV V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEIGERVKVNDGPFEGFDGMVEGVDDDSQKLRVSVSIFGRETPVELDFTQVAK 175 >gi|119899718|ref|YP_934931.1| transcription antitermination protein NusG [Azoarcus sp. BH72] gi|119672131|emb|CAL96045.1| putative transcription antitermination protein [Azoarcus sp. BH72] Length = 179 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWY+V YS EK ++ R++R+G+ +I +P E VV ++ G+K SER+F Sbjct: 3 MTKRWYVVHAYSGFEKSVQRALVDRINRAGMQDAFGQILVPVEEVVEMKGGQKSISERKF 62 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D+ +H +K TPKV GF+G P+P+++ E+E IM Q++ V +P Sbjct: 63 FPGYVLVEMEMNDESWHLVKSTPKVTGFVGGTANKPTPISEKEVEKIMQQMQEGVDKPRP 122 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V +GPF F+G V++V+ EKS++ V V IFGR TPVEL + QVEK Sbjct: 123 KVLFETGEVVRVKEGPFTDFHGSVEDVNYEKSKLRVSVTIFGRATPVELDFAQVEK 178 >gi|295694823|ref|YP_003588061.1| NusG antitermination factor [Bacillus tusciae DSM 2912] gi|295410425|gb|ADG04917.1| NusG antitermination factor [Bacillus tusciae DSM 2912] Length = 180 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+V YS E K ++ R+ ++ + + +P+E + + G+K ++ F Sbjct: 5 EKRWYVVHTYSGFENKVKTNLEKRVLSMNMEDKIFRVLVPTEEEIETKNGKKRAVMKKVF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P P+ +E+ I+ Q+ + P Sbjct: 65 PGYVLVEMIMTDDSWYVVRNTPGVTGFVGSTGAGSKPIPLHPAEVRAILKQMG--MDEPK 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V + V V +GPFA F G ++ V EK +V V V +FGR TP+EL ++QVEKI Sbjct: 123 ERVDLHVRDAVRVVEGPFADFVGSIEEVYPEKQKVRVLVSMFGRDTPLELEFSQVEKI 180 >gi|110681150|ref|YP_684157.1| transcription antitermination protein NusG [Roseobacter denitrificans OCh 114] gi|109457266|gb|ABG33471.1| transcription antitermination protein NusG [Roseobacter denitrificans OCh 114] Length = 191 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 74 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 75 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K Sbjct: 135 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 189 >gi|157960002|ref|YP_001500036.1| NusG antitermination factor [Shewanella pealeana ATCC 700345] gi|157845002|gb|ABV85501.1| NusG antitermination factor [Shewanella pealeana ATCC 700345] Length = 183 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +++ + +++ E+ +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVIQAFSGYEGRVCKTLLEHIRMHEMENYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLQETTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL ++Q+EK Sbjct: 129 MFEPGEVVRVNDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 182 >gi|304415281|ref|ZP_07395976.1| transcription antitermination protein [Candidatus Regiella insecticola LSR1] gi|304282871|gb|EFL91339.1| transcription antitermination protein [Candidatus Regiella insecticola LSR1] Length = 181 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQV+S E + +S+ + ++ EI +P+E ++ +R G++ SER+FFP Sbjct: 7 KRWYVVQVFSRFEGRVAQSLREYIKLKEVEDQFGEIMVPTEELLEMRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M + +H ++ P+V+GF+G + P+P++D E+ IM +++ +P Sbjct: 67 GYVLVQMSMNETSWHLVRSVPRVMGFIGGTSDRPAPISDKEVNAIMARLQQIGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+R+ V V IFGR TPVEL ++Q+ K Sbjct: 127 LFEPGESVRVNDGPFADFNGTVEKVDYEKNRLTVSVSIFGRATPVELDFSQIGK 180 >gi|159039849|ref|YP_001539102.1| NusG antitermination factor [Salinispora arenicola CNS-205] gi|157918684|gb|ABW00112.1| NusG antitermination factor [Salinispora arenicola CNS-205] Length = 242 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQIQAKVFPGY 123 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117 +L++ +T + Y +++TP V GF+G + E+ + AV++ Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 242 >gi|260425721|ref|ZP_05779701.1| transcription termination/antitermination factor NusG [Citreicella sp. SE45] gi|260423661|gb|EEX16911.1| transcription termination/antitermination factor NusG [Citreicella sp. SE45] Length = 191 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 15 MAKRWYSVSVLSNFEKKIAEQIRQSVEEQGLQEQIDEVLVPTEEVIEVRRGKKVTTERRF 74 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +V+ P + Sbjct: 75 MPGYVLVHMEMSDQGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVQETEDAPRTL 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GERV V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K Sbjct: 135 IHFEIGERVKVNDGPFEGFDGMVEGVDDDNQRLRVSVSIFGRETPVELEFTQVSK 189 >gi|219871896|ref|YP_002476271.1| transcription antitermination protein NusG [Haemophilus parasuis SH0165] gi|219692100|gb|ACL33323.1| transcription antitermination protein NusG [Haemophilus parasuis SH0165] Length = 177 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFP Sbjct: 1 MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ E E I+N+V+ +P Sbjct: 61 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQREAERILNRVQETADKPRHRT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK Sbjct: 121 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 174 >gi|16077169|ref|NP_387982.1| transcription antitermination protein NusG [Bacillus subtilis subsp. subtilis str. 168] gi|221307913|ref|ZP_03589760.1| transcription antitermination protein NusG [Bacillus subtilis subsp. subtilis str. 168] gi|221312234|ref|ZP_03594039.1| transcription antitermination protein NusG [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317168|ref|ZP_03598462.1| transcription antitermination protein NusG [Bacillus subtilis subsp. subtilis str. JH642] gi|221321431|ref|ZP_03602725.1| transcription antitermination protein NusG [Bacillus subtilis subsp. subtilis str. SMY] gi|296333098|ref|ZP_06875552.1| transcription antitermination protein NusG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672800|ref|YP_003864471.1| transcription antitermination protein NusG [Bacillus subtilis subsp. spizizenii str. W23] gi|321313772|ref|YP_004206059.1| transcription antitermination protein NusG [Bacillus subtilis BSn5] gi|548391|sp|Q06795|NUSG_BACSU RecName: Full=Transcription antitermination protein nusG gi|285628|dbj|BAA02560.1| transcription antitermination factor NusG [Bacillus subtilis] gi|2632368|emb|CAB11877.1| transcription antitermination factor [Bacillus subtilis subsp. subtilis str. 168] gi|291482473|dbj|BAI83548.1| transcription antitermination protein NusG [Bacillus subtilis subsp. natto BEST195] gi|296149714|gb|EFG90609.1| transcription antitermination protein NusG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411043|gb|ADM36161.1| transcription antitermination protein NusG [Bacillus subtilis subsp. spizizenii str. W23] gi|320020046|gb|ADV95032.1| transcription antitermination protein NusG [Bacillus subtilis BSn5] Length = 177 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERK- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 120 -TDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|116748979|ref|YP_845666.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|116698043|gb|ABK17231.1| transcription antitermination protein nusG [Syntrophobacter fumaroxidans MPOB] Length = 180 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 109/175 (62%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WYIV YS E K ++ R+ G L +I +P+E+V+ + KG++ S R+F+ Sbjct: 6 AKSWYIVHTYSGFEHKVKSALEERIKAEGKGSLFGQILVPTEKVIELVKGQRKASSRKFY 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+L++ + D +H ++ TPKV GF+G+ E P P++D E E I+ Q+E Q+P Sbjct: 66 PGYILVQMELNDDTWHLVRHTPKVTGFIGSQERPIPLSDEEAETIILQMEEGAQKPRPKF 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V DGPFASFNGIV V +K +V V V IFGR TPVEL + QV +I Sbjct: 126 RFEKGDEVRVVDGPFASFNGIVDEVMPDKGKVRVLVSIFGRSTPVELDFVQVNRI 180 >gi|120613169|ref|YP_972847.1| transcription antitermination protein nusG [Acidovorax citrulli AAC00-1] gi|120591633|gb|ABM35073.1| transcription antitermination protein nusG [Acidovorax citrulli AAC00-1] Length = 197 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I+NQ++ +P + Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196 >gi|300690140|ref|YP_003751135.1| transcription termination factor [Ralstonia solanacearum PSI07] gi|299077200|emb|CBJ49826.1| transcription termination factor [Ralstonia solanacearum PSI07] Length = 194 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK S+ R+ R+GL H+ I +PSE VV ++ G K +ERRFFP Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRAGLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G G P+P++ E++ IM Q++ V++P Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQKEVDKIMTQIQEGVEKPRPKT 139 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|89902361|ref|YP_524832.1| NusG antitermination factor [Rhodoferax ferrireducens T118] gi|89347098|gb|ABD71301.1| transcription antitermination protein nusG [Rhodoferax ferrireducens T118] Length = 202 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK +I R++RSG+ H I +P E VV ++ G+K +ER+FFPG Sbjct: 29 RWYVVHAYSGMEKAVERNITERINRSGMQHKFGRILVPMEEVVEIKNGQKKTTERKFFPG 88 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ VM D +H +K T KV GF+G P+P++++E+ I+NQ++ ++P V Sbjct: 89 YVLVEMVMDDDTWHLVKHTNKVTGFVGGLKTRPAPISEAEVLKIVNQMQEGTEKPRHKVE 148 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FEVGE V V DGPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK Sbjct: 149 FEVGEFVRVKDGPFTDFNGSVEDVNYEKSKVRVAVTIFGRATPVELDFSQIEK 201 >gi|253998002|ref|YP_003050065.1| NusG antitermination factor [Methylovorus sp. SIP3-4] gi|313200070|ref|YP_004038728.1| nusg antitermination factor [Methylovorus sp. MP688] gi|253984681|gb|ACT49538.1| NusG antitermination factor [Methylovorus sp. SIP3-4] gi|312439386|gb|ADQ83492.1| NusG antitermination factor [Methylovorus sp. MP688] Length = 178 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY VQ +S EK + R++RS L + +I +P E V+ ++ G+K SER+ Sbjct: 1 MSMRWYAVQAFSGFEKSVQRGLEERIARSDLQDMFGQILVPVEEVIEMKNGQKAISERKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H +K TP+V F+G P+P+ D E+E I+ +++ + P Sbjct: 61 YPGYVLVQMQMNDDTWHLVKSTPRVTAFIGGTALKPTPIKDKEVEIILQRMDESKSNPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V V DGPF F+G V++++ EKS++ V VVIFGR TPVEL ++QVEK V Sbjct: 121 KLTFEKGESVRVIDGPFKDFSGNVEDINYEKSKLRVSVVIFGRATPVELDFDQVEKEV 178 >gi|56418627|ref|YP_145945.1| transcription antitermination protein NusG [Geobacillus kaustophilus HTA426] gi|56378469|dbj|BAD74377.1| transcription antitermination factor [Geobacillus kaustophilus HTA426] Length = 177 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMKDKIFRVVVPEETETDVKNGKRKTTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E++ I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLMEEEVKMILKRMGMPLAEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +EV E V + +GPFA+F G ++ +D +K +V + V +FGR T VEL ++Q+EKI Sbjct: 121 --DVDYEVNETVRIKEGPFANFTGKIEAIDPDKHKVKLLVDMFGRETRVELEFSQIEKI 177 >gi|84499877|ref|ZP_00998143.1| transcription termination/antitermination factor NusG [Oceanicola batsensis HTCC2597] gi|84391811|gb|EAQ04079.1| transcription termination/antitermination factor NusG [Oceanicola batsensis HTCC2597] Length = 177 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAENGLEDEIEEVLVPTEEVIEIRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ M+D YH I +V GFLG P P+ D+E+ I+ +V ++P + Sbjct: 61 MPGYVLVRMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVASILGRVAEGEEQPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F G+++ VD++ R+ V V IFGR TPVEL Y QV K Sbjct: 121 IHFEVGEKVKVNDGPFEDFTGMIEEVDDDNQRLKVSVSIFGRETPVELEYTQVTK 175 >gi|302869988|ref|YP_003838625.1| transcription termination/antitermination factor NusG [Micromonospora aurantiaca ATCC 27029] gi|315501449|ref|YP_004080336.1| nusg antitermination factor [Micromonospora sp. L5] gi|302572847|gb|ADL49049.1| transcription termination/antitermination factor NusG [Micromonospora aurantiaca ATCC 27029] gi|315408068|gb|ADU06185.1| NusG antitermination factor [Micromonospora sp. L5] Length = 240 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDFIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117 +L++ +T + Y +++TP V GF+G + E+ + Q+ Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240 >gi|89071242|ref|ZP_01158421.1| transcription termination/antitermination factor NusG [Oceanicola granulosus HTCC2516] gi|89043228|gb|EAR49458.1| transcription termination/antitermination factor NusG [Oceanicola granulosus HTCC2516] Length = 177 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAENGLEDQIDEVLVPTEEVIEVRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 175 >gi|145596449|ref|YP_001160746.1| transcription termination/antitermination factor NusG [Salinispora tropica CNB-440] gi|145305786|gb|ABP56368.1| transcription antitermination protein nusG [Salinispora tropica CNB-440] Length = 242 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY Sbjct: 64 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTRDEVEVKNGKRSQVQAKVFPGY 123 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117 +L++ +T + Y +++TP V GF+G + E+ + AV++ Sbjct: 124 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVEAVEKKAKPE 183 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI Sbjct: 184 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 242 >gi|157690884|ref|YP_001485346.1| transcription antitermination protein NusG [Bacillus pumilus SAFR-032] gi|194017580|ref|ZP_03056191.1| transcription termination/antitermination factor NusG [Bacillus pumilus ATCC 7061] gi|157679642|gb|ABV60786.1| transcription antiterminator NusG [Bacillus pumilus SAFR-032] gi|194010852|gb|EDW20423.1| transcription termination/antitermination factor NusG [Bacillus pumilus ATCC 7061] Length = 177 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRMG--LEER 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 119 KTEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|288554711|ref|YP_003426646.1| transcription antitermination protein NusG [Bacillus pseudofirmus OF4] gi|288545871|gb|ADC49754.1| transcription antitermination protein NusG [Bacillus pseudofirmus OF4] Length = 177 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ + + + +P E V+ G+ ++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPVEEETEVKNGKTKQVTKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYV+++ VMTD ++ +++TP V GF+G+ G P+ + E E I+ Q+ V P Sbjct: 61 FPGYVIVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTALLPEEAEAILKQMG--VSEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL ++QVEKI Sbjct: 119 KADLDFELKESVKVKEGPFANFIGSIEEIYLDKQKIKVHVNMFGRETPVELEFDQVEKI 177 >gi|226939174|ref|YP_002794245.1| transcription antitermination protein NusG [Laribacter hongkongensis HLHK9] gi|226714098|gb|ACO73236.1| NusG [Laribacter hongkongensis HLHK9] Length = 175 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 120/175 (68%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS EK +++ R+ R+ + HL +I +P E VV ++ G++ +ER+FFP Sbjct: 1 MKWYVVHAYSGFEKSVQKALRERIERAEMQHLFGKILVPVEEVVDIKNGKRTLAERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K TPKV GF+G P+P+ SE++ IM Q++ V++P V Sbjct: 61 GYVLVEMEMNDDTWHLVKSTPKVSGFIGGTANRPAPIKPSEVDAIMQQIQEGVEKPKPKV 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG++V VSDGPFA FNG+V V+ E+SR+ V V IFGR TPVEL +NQVEK+ Sbjct: 121 LFEVGQKVRVSDGPFADFNGVVDEVNYERSRLRVSVQIFGRDTPVELEFNQVEKL 175 >gi|157377461|ref|YP_001476061.1| NusG antitermination factor [Shewanella sediminis HAW-EB3] gi|157319835|gb|ABV38933.1| NusG antitermination factor [Shewanella sediminis HAW-EB3] Length = 183 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMHNMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ ++E V+ P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEADAILQRLEETVESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182 >gi|240850287|ref|YP_002971680.1| transcription antitermination protein NusG [Bartonella grahamii as4aup] gi|240267410|gb|ACS50998.1| transcription antitermination protein NusG [Bartonella grahamii as4aup] Length = 176 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 138/176 (78%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GRKV++ER+F Sbjct: 1 MAARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS Sbjct: 61 FPGYVLVRAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREVEQILKQVQERVESPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+ Sbjct: 121 VLFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 176 >gi|254361447|ref|ZP_04977587.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213] gi|261491948|ref|ZP_05988525.1| transcription antiterminator NusG [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496249|ref|ZP_05992654.1| transcription antiterminator NusG [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092957|gb|EDN73983.1| transcription antiterminator NusG [Mannheimia haemolytica PHL213] gi|261308080|gb|EEY09378.1| transcription antiterminator NusG [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312415|gb|EEY13541.1| transcription antiterminator NusG [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 187 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY++Q +S E + ++ + ++ E+ +P+E VV G++ +ER+FF Sbjct: 11 SKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQFGEVLVPTEEVVENVGGKRRKTERKFF 70 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ M D +H +K P+V+GF+G + P+P+T E + I+N+V+ ++P Sbjct: 71 PGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTADRPAPITKREADRILNRVQETAEKPRHR 130 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE + V++GPFA F+G V+ VD EK R+ V V IFGR TPVEL ++QVEK Sbjct: 131 KEFQPGESILVTEGPFADFSGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 185 >gi|319654854|ref|ZP_08008929.1| transcription antitermination protein NusG [Bacillus sp. 2_A_57_CT2] gi|317393417|gb|EFV74180.1| transcription antitermination protein NusG [Bacillus sp. 2_A_57_CT2] Length = 177 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETELKNGKKKVVKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E+ +I+ + V+ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEVTNILKHMG--VEEA 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA+F G ++++D++K+++ V V +FGR TPVEL ++Q+EK+ Sbjct: 119 RFDINFEIGETVQVKEGPFANFTGTIEDIDKDKAKIKVLVNMFGRDTPVELDFSQIEKL 177 >gi|294012699|ref|YP_003546159.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S] gi|292676029|dbj|BAI97547.1| transcriptional antiterminator NusG [Sphingobium japonicum UT26S] Length = 178 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 110/176 (62%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL K M D +YH +K+TPKV GFLG+ P ++++E +AA P Sbjct: 60 MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEAEAARYFGAQKAAEAAPKHK 119 Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE Sbjct: 120 INVDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175 >gi|94266155|ref|ZP_01289867.1| transcription antitermination protein NusG:KOW [delta proteobacterium MLMS-1] gi|93453270|gb|EAT03719.1| transcription antitermination protein NusG:KOW [delta proteobacterium MLMS-1] Length = 176 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E++ ++ R+ + + + EI +P+E+VV + KG K S R+F Sbjct: 1 MARRWYILHTYSGFEEQVKTALLERIKNAAQEEMFGEILVPTEQVVEMVKGAKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ + D+ +HT++DTPKV GF+G NP P+ D+E + I+ +++ +P Sbjct: 61 FPGYILVNVELNDQTWHTVRDTPKVTGFVGNDLNPEPLDDAEAKKIIGRIQDGALKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE G++V V DGPFASF G+V V +K RV V V IFGR TPVEL Y QV K Sbjct: 121 VSFEEGDQVRVVDGPFASFQGVVDEVYPDKGRVRVRVSIFGRETPVELEYIQVSK 175 >gi|303256436|ref|ZP_07342450.1| transcription termination/antitermination factor NusG [Burkholderiales bacterium 1_1_47] gi|331000376|ref|ZP_08324056.1| transcription termination/antitermination factor NusG [Parasutterella excrementihominis YIT 11859] gi|302859927|gb|EFL83004.1| transcription termination/antitermination factor NusG [Burkholderiales bacterium 1_1_47] gi|329572082|gb|EGG53751.1| transcription termination/antitermination factor NusG [Parasutterella excrementihominis YIT 11859] Length = 178 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ +WY+V YS EK A ++ R++R GL EI +P+E + V+ G+K S RR Sbjct: 1 MSDMKWYVVHTYSGMEKSAESALRERIAREGLQDCFEEILVPTEDISEVKNGKKRVSTRR 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPV 118 + GY+ +K +M D+ +H +K+T ++ GFLG PSP+ +IE I +++EA + P Sbjct: 61 MYSGYIFVKMIMNDETWHLVKNTARITGFLGGSANKPSPLPAKDIEAIKSKMEAGSEAPR 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVG V + +GPF FNGI++ V+ +K+R+ V V IFGR TPVELA+N+VEK Sbjct: 121 PRVEFEVGGSVRIKNGPFTDFNGIIEEVNYDKNRLRVMVSIFGRDTPVELAFNEVEK 177 >gi|330470187|ref|YP_004407930.1| nusg antitermination factor [Verrucosispora maris AB-18-032] gi|328813158|gb|AEB47330.1| nusg antitermination factor [Verrucosispora maris AB-18-032] Length = 240 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQVQAKVFPGY 121 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117 +L++ +T + Y +++TP V GF+G + E+ + Q+ Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPAVETEQKKAKPE 181 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI Sbjct: 182 IKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVAKI 240 >gi|13470537|ref|NP_102105.1| transcription antitermination protein NusG [Mesorhizobium loti MAFF303099] gi|14021278|dbj|BAB47891.1| transcription antitermination protein [Mesorhizobium loti MAFF303099] Length = 175 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 98/175 (56%), Positives = 129/175 (73%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174 >gi|332172374|gb|AEE21628.1| NusG antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 190 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFP Sbjct: 16 KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDYFGEILVPTEEVIEMRSGQQRKSERKFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M + +H +K P+V+GF+G + P+P+T+ E I+N++E V +P Sbjct: 76 GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITNKEANAILNRLEEGVDKPKPKT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189 >gi|71892331|ref|YP_278065.1| transcription antitermination protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796437|gb|AAZ41188.1| transcription antitermination protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 181 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + S+ + +D + EI +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGFENRVAHSLREHIKLHNMDTMFGEIMVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D +H +K P+V+GF+G + P+P+ D E+ IM++++ +P Sbjct: 67 GYVLVQMIMNDSSWHLVKSVPRVMGFVGGTCDKPAPIGDKEVNDIMHRLQQIGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVELDFSQVEK 180 >gi|171060542|ref|YP_001792891.1| NusG antitermination factor [Leptothrix cholodnii SP-6] gi|170777987|gb|ACB36126.1| NusG antitermination factor [Leptothrix cholodnii SP-6] Length = 188 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK ++ R+ RSG+ I +P+E VV ++ G+K +ERRFFP Sbjct: 14 MRWYVVHAYSGMEKAVERNLRERIDRSGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFP 73 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M D+ +H +K+T KV GF+G P+P+++ E+ I+ Q++ +++P V Sbjct: 74 GYVLVEMLMDDESWHLVKNTSKVTGFVGGAKNRPTPISEDEVMKIVTQMQEGIEKPRPKV 133 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V V +GPF FNG V+ V+ +K++V V V IFGR TPVEL ++QVEK+ Sbjct: 134 EWEVGEVVRVKEGPFTDFNGSVEEVNYDKNKVRVSVTIFGRATPVELDFHQVEKV 188 >gi|311070748|ref|YP_003975671.1| transcription antitermination protein NusG [Bacillus atrophaeus 1942] gi|310871265|gb|ADP34740.1| transcription antitermination protein NusG [Bacillus atrophaeus 1942] Length = 177 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+ + E E I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPGEAETILKRMGMDERK- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + FE+ E V V DGPFA+F G ++ +D +KS+V V V +FGR TPVEL + Q++K+ Sbjct: 120 -TEIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177 >gi|83854994|ref|ZP_00948524.1| transcription termination/antitermination factor NusG [Sulfitobacter sp. NAS-14.1] gi|83842837|gb|EAP82004.1| transcription termination/antitermination factor NusG [Sulfitobacter sp. NAS-14.1] Length = 177 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 81/177 (45%), Positives = 114/177 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V Sbjct: 121 IHFEVGEKVKVTDGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177 >gi|319783303|ref|YP_004142779.1| transcription termination/antitermination factor NusG [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169191|gb|ADV12729.1| transcription termination/antitermination factor NusG [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 175 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIHQIVVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174 >gi|260432412|ref|ZP_05786383.1| transcription termination/antitermination factor NusG [Silicibacter lacuscaerulensis ITI-1157] gi|260416240|gb|EEX09499.1| transcription termination/antitermination factor NusG [Silicibacter lacuscaerulensis ITI-1157] Length = 177 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V+SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVFSNFEKKIAEQIRAAVAEQGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+DK YH I +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDKGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VDEE ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDEENQKLKVSVSIFGRETPVELDFTQVTK 175 >gi|23097561|ref|NP_691027.1| transcription antitermination protein NusG [Oceanobacillus iheyensis HTE831] gi|22775784|dbj|BAC12062.1| transcriptional antiterminator [Oceanobacillus iheyensis HTE831] Length = 178 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G++ + + +P + ++ G+K +++ Sbjct: 1 MEKNWYVVHTYSGYENKVKMNLEKRVESMGMEDKIFRVIVPEDEEAEIKNGKKKMVKKKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL + VMTD ++ +++TP V GF+G+ P+P+ EI+ ++ ++ V P Sbjct: 61 FPGYVLTEMVMTDDSWYVVRNTPGVTGFVGSSGHGAKPTPLMPGEIDVVLKRMG--VSEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+ E V V+DGPF F G ++++D +K ++ V V +FGR TPVEL ++QVEK+ Sbjct: 119 TVQVDFEIKENVRVTDGPFTDFTGSIEHIDTDKQKIKVHVNMFGRETPVELDFSQVEKL 177 >gi|302523949|ref|ZP_07276291.1| transcription termination/antitermination factor NusG [Streptomyces sp. AA4] gi|302432844|gb|EFL04660.1| transcription termination/antitermination factor NusG [Streptomyces sp. AA4] Length = 265 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PGY Sbjct: 77 WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 136 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP+T E+ + Sbjct: 137 ILVRMDLNDQSWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPQVEKEAPAKAAKGGE 196 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 P V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVE Sbjct: 197 SAAAATSGAPTVEVDFEVGESVTVMDGPFATLPATISEVNVDGQKLKVLVSIFGRETPVE 256 Query: 168 LAYNQVEKI 176 L+++QV KI Sbjct: 257 LSFSQVSKI 265 >gi|238061137|ref|ZP_04605846.1| transcription termination/antitermination factor nusG [Micromonospora sp. ATCC 39149] gi|237882948|gb|EEP71776.1| transcription termination/antitermination factor nusG [Micromonospora sp. ATCC 39149] Length = 240 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R++ ++ + ++ +P+ V V+ G++ + + FPGY Sbjct: 62 WYVVHSYAGYENKVKTNLETRITSLDMEDYIYQVEVPTREEVEVKNGKRSQIQAKVFPGY 121 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQR----P 117 +L++ +T + Y +++TP V GF+G + E+ + Q+ Sbjct: 122 ILVRMELTAESYSCVRNTPGVTGFVGATDRADRPAPLSLDEVLKWLAPTVETEQKKAKPE 181 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + FEVG+ V V+DG FAS + ++ ++ ++ V V IFGR TPVEL +NQV KI Sbjct: 182 VKVLDFEVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRETPVELNFNQVTKI 240 >gi|269469123|gb|EEZ80671.1| hypothetical protein Sup05_0528 [uncultured SUP05 cluster bacterium] Length = 177 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY++ S E K +I ++R GL+ +V ++ IP+E+VV ++ G+K +ER+F Sbjct: 1 MSKRWYVLHARSGYEAKVKIAIEEAVAREGLEDIVGDVMIPTEQVVELKDGQKKTAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+L+ +T+ + +K+T VIGF+G PSP+T E++ IM +V+ +P Sbjct: 61 FPGYMLVSMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKIMARVQEGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V ++ GE + V+DGPF F G V++VD EK+ + VEV+IFGR TPVEL ++QV K Sbjct: 121 KVAYQPGEEILVTDGPFNEFTGTVESVDYEKNLLKVEVLIFGRTTPVELEFSQVAK 176 >gi|94676921|ref|YP_588932.1| transcription termination/antitermination factor NusG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220071|gb|ABF14230.1| transcription termination/antitermination factor NusG [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 181 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +S+ + + L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVIQAFSGLEGRVAQSLREHIKLYATEKLFGEVIVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL+ VM D +H +++ P+V+GF+G + PSP++D E+ IMN+++ +P Sbjct: 67 GYVLVHMVMNDSSWHLVRNVPRVMGFIGGTSDRPSPISDKEVLAIMNRLQKTGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD +KSR+ V V IFGR TPVEL ++QVEK Sbjct: 127 LFEPGELVRVNDGPFADFNGVVEEVDYDKSRLKVSVSIFGRTTPVELDFSQVEK 180 >gi|225874474|ref|YP_002755933.1| transcription termination/antitermination factor NusG [Acidobacterium capsulatum ATCC 51196] gi|225791805|gb|ACO31895.1| transcription termination/antitermination factor NusG [Acidobacterium capsulatum ATCC 51196] Length = 205 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 116/173 (67%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+ YS E+K ESI GR+ GL + + + IP+E V + G+K ER F PG Sbjct: 31 KWYIIHAYSGFERKVKESIEGRVQAFGLQNKIGRVMIPTEPVTEIVNGKKRTIERVFLPG 90 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ + + ++H IKDTP+V GFLGTG+ P ++++E+ I+ + + + ++P + F Sbjct: 91 YVLVEMDLDNDLWHIIKDTPRVTGFLGTGDKPVALSEAEVSSILFRTDVSKEKPRLKIKF 150 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E E V +++GPFA+FNG+V +++E++ + V V IFGR TPVEL + +VEKI Sbjct: 151 EKNESVRITEGPFANFNGVVDDINEDRETLKVMVTIFGRSTPVELEFAKVEKI 203 >gi|326319231|ref|YP_004236903.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376067|gb|ADX48336.1| NusG antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 197 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG Sbjct: 24 RWYIVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I+NQ++ +P + Sbjct: 84 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEDEVQKIVNQIQEGTDKPRHKIE 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPFA FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK Sbjct: 144 FMVGELVRVKEGPFADFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196 >gi|260469687|ref|ZP_05813849.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259028546|gb|EEW29860.1| NusG antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 175 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 99/175 (56%), Positives = 130/175 (74%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWYIV YSN EKK E I + + GL + +I +P+E+VV VR+GRKV++ER+F Sbjct: 1 MTARWYIVHAYSNFEKKVAEDIENKAKQKGLSADIEQIVVPTEKVVEVRRGRKVDAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TD V+ +K+TPKV GFLG P P+T++E + I+NQV+ V+RP S Sbjct: 61 FPGYVLLKANLTDAVFSLVKNTPKVTGFLG-DSKPVPITEAEAQRILNQVQEGVERPKPS 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE + VSDGPFASFNG V+ VDEE++R+ VEV IFGR PV+L + QVEK Sbjct: 120 VTFEIGEAIRVSDGPFASFNGFVQEVDEERARLKVEVSIFGRAVPVDLEFGQVEK 174 >gi|238897918|ref|YP_002923597.1| component in transcription antitermination [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465675|gb|ACQ67449.1| component in transcription antitermination [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 179 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + ++ ++ +P+E VV VR G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFESRVKQSLHEHIKLHSMEDYFGDVMVPTEEVVEVRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ +M D +H ++ P+V+GF+G G P+P+TD E + I+N+++ +P Sbjct: 67 GYVLVQMIMNDASWHLVRSVPRVMGFIG-GIVPTPITDKEADAIINRLQQTTDKPRPKTL 125 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V++GPFA FNG V+ VD EKSR+ V V IFGR TPVEL ++Q+EK Sbjct: 126 FEPGELVRVNEGPFAEFNGTVEEVDYEKSRLKVSVSIFGRATPVELDFSQIEK 178 >gi|159896654|ref|YP_001542901.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|159889693|gb|ABX02773.1| NusG antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 188 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY++ YS E K ++++ R+ + + + + +P+E + ++ G++ +++ FPG Sbjct: 16 HWYVIHTYSGYENKVMQNLRHRIESMDMRNQIFRVVVPTEEEIEIKNGQRRTVQKKVFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ MTD ++ +++TP V F+G G PSP+ D E+ I+ Q+E + P V + Sbjct: 76 YVLVQMAMTDDSWYVVRNTPGVTSFVGMGTKPSPLADEEVRFILKQMEE--EAPKVKVNY 133 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 E+G+ V ++DGPF F G+V +DEE+ RV V V FGR PVEL + QV +++ Sbjct: 134 EIGQTVKITDGPFTDFEGVVDEIDEERGRVRVLVSFFGREAPVELDFLQVIRVI 187 >gi|21672333|ref|NP_660400.1| transcription antitermination protein NusG [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008872|sp|Q8KA65|NUSG_BUCAP RecName: Full=Transcription antitermination protein nusG gi|21622935|gb|AAM67611.1| transcription antitermination protein NusG [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 181 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++Q +S E + +SI + + ++ E+ +PSE V+ +R G++ SE +FFP Sbjct: 7 KKWYVLQAFSGFESRVAQSIKEHVKLNKMNDFFGEVMVPSEEVIEIRGGQRRKSEYKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI +MTD +H I++ P+V+GF+G + PSP++D E++ I+N++ +P Sbjct: 67 GYVLIHMIMTDSTWHLIRNVPRVLGFIGGKSDKPSPISDKEVDIIINRLRQIGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVEK 180 >gi|301059238|ref|ZP_07200175.1| transcription termination/antitermination factor NusG [delta proteobacterium NaphS2] gi|300446673|gb|EFK10501.1| transcription termination/antitermination factor NusG [delta proteobacterium NaphS2] Length = 176 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 109/176 (61%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYIV YS E + +S+ R+ G I +P+E++V ++KG+K + R+F Sbjct: 1 MELKWYIVHTYSGFEDRVKKSLEERIESFGQQDYFGRILVPTEQIVELKKGQKKTTSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY+L++ + + +HT+++T KV GF+G NP+PV+D E E ++ Q+E V RP + Sbjct: 61 YPGYILVEMHINQETWHTVRNTAKVTGFVGGEVNPTPVSDEEAERVIRQMEEGVSRPKAR 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V DGPF +F G V V +K ++ V + IFGR TPVEL + QV I Sbjct: 121 YNFEEGDEVRVIDGPFTNFQGTVSEVKPDKEKLRVLITIFGRPTPVELDFIQVTTI 176 >gi|212637940|ref|YP_002314460.1| transcription antitermination protein NusG [Anoxybacillus flavithermus WK1] gi|212559420|gb|ACJ32475.1| Transcription antiterminator NusG [Anoxybacillus flavithermus WK1] Length = 177 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ G+ + + +P E + G+K +++ Sbjct: 1 MEKNWYVIHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEETDTKGGKKKVVKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ + E+ I+ ++ V Sbjct: 61 FPGYVLVEMIMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLEEEVSAILKRMG--VDLI 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V + +GPFA+F G ++ ++ +K +V V V +FGR TPVEL ++Q+EKI Sbjct: 119 ELDFDFELNEAVRIKEGPFANFVGTIQEIEMDKQKVTVLVDMFGRETPVELDFSQIEKI 177 >gi|239825679|ref|YP_002948303.1| transcription antitermination protein NusG [Geobacillus sp. WCH70] gi|239805972|gb|ACS23037.1| NusG antitermination factor [Geobacillus sp. WCH70] Length = 177 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ G+ + I +P E + G+K ++++ Sbjct: 1 MEKNWYVIHTYSGYENKVKANLEKRVESMGMQDKIFRIVVPEETETDTKNGKKKATKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ + E+E I+ ++ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGAGSKPTPLLEEEVEMILKRMGMPLTE- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVE ++Q+EKI Sbjct: 120 -IDVDYELNETVRVKEGPFANFTGKIEEIDLDKRKVKVLVNMFGRETPVEFEFSQIEKI 177 >gi|189424398|ref|YP_001951575.1| NusG antitermination factor [Geobacter lovleyi SZ] gi|189420657|gb|ACD95055.1| NusG antitermination factor [Geobacter lovleyi SZ] Length = 175 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS E K ++ R+ ++ L EI IPSE VV ++KG K S R+F Sbjct: 1 MSQKWYGVHTYSGYENKVRLNLTERVKNEKMEDLFGEILIPSETVVELKKGEKKTSSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+LIK +TD+ +H +K+T KV GF+G G P P+ D E+ I ++E ++P Sbjct: 61 FPGYILIKMELTDETWHIVKETAKVTGFVG-GNTPFPIPDEEVNKIARRMEEGAEKPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F+VGE V V DGPF +F G++++V +K ++ V V IFGR TPVEL + QVEK Sbjct: 120 VEFDVGETVRVVDGPFLNFTGVIEDVKPDKGKLRVAVTIFGRSTPVELEFMQVEK 174 >gi|254282245|ref|ZP_04957213.1| transcription termination/antitermination factor NusG [gamma proteobacterium NOR51-B] gi|219678448|gb|EED34797.1| transcription termination/antitermination factor NusG [gamma proteobacterium NOR51-B] Length = 177 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V +S EKK ++ R+ R G+ EI +P+E VV ++ G+K SER+F Sbjct: 1 MALRWYVVHAFSQYEKKVCLALKERIERYGMQDRFGEIIVPTEEVVEMKGGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + ++ +H +K+TP+V+GF+G + P+P+T+ E + I+ +VEA V P Sbjct: 61 FPGYVLVQMELDEETWHLVKETPRVLGFIGGTADQPAPITEKEAQAILQRVEAGVDAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG+V++V+ EKSR++V V+IFGR TPVEL + QVEK Sbjct: 121 KTVFEPGEMVRVIDGPFNDFNGVVEDVNYEKSRLNVAVLIFGRSTPVELEFGQVEK 176 >gi|302877789|ref|YP_003846353.1| NusG antitermination factor [Gallionella capsiferriformans ES-2] gi|302580578|gb|ADL54589.1| NusG antitermination factor [Gallionella capsiferriformans ES-2] Length = 177 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS EK ++ R++R G+ +I +P E VV ++ G+KV SER+F Sbjct: 1 MAMSWYVVHTYSQFEKSVSRALVERIAREGMQEKFGQILVPVEEVVELKGGQKVTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ MTD+ +H +K+TPKV GFLG P+P+++ E+++IM Q++A V++P Sbjct: 61 FPGYVLVEMEMTDESWHLVKNTPKVTGFLGGSAMRPTPISEKEVQNIMQQMQAGVEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V +GPF F G+V+ V+ +K+++ V V IFGR TPVEL + QVEK Sbjct: 121 KVLFEVGESVRVKEGPFTDFTGMVEEVNYDKNKIRVAVTIFGRATPVELDFGQVEK 176 >gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii RHA1] gi|110818507|gb|ABG93791.1| transcription antitermination protein [Rhodococcus jostii RHA1] Length = 264 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 75 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 134 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP+T +E+ + + + Sbjct: 135 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 194 Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 +P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 195 GETGGESFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 254 Query: 167 ELAYNQVEKI 176 EL++ QV KI Sbjct: 255 ELSFTQVAKI 264 >gi|307297143|ref|ZP_07576957.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1] gi|306877447|gb|EFN08677.1| NusG antitermination factor [Sphingobium chlorophenolicum L-1] Length = 178 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 109/176 (61%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVKESILSEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL K M D +YH +K+TPKV GFLG+ P +++++ + A P Sbjct: 60 MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGSSGKPQAISEADAARYFGAQKEAEAAPKHK 119 Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + +E+G+ V V DGPFASFNG V+ +D EK+RV V V IFGR TPVEL + QVE Sbjct: 120 ISVDYEIGDSVKVLDGPFASFNGTVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175 >gi|317125904|ref|YP_004100016.1| transcription antitermination protein nusG [Intrasporangium calvum DSM 43043] gi|315589992|gb|ADU49289.1| transcription antitermination protein nusG [Intrasporangium calvum DSM 43043] Length = 292 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++V Y+ E + ++ R+ ++ + EI +P E V ++ G+K R PGY Sbjct: 109 WFVVHSYAGYENRVKANLETRIQTLNMEDYIFEIEVPMEEVTEIKNGQKKLVRRVRMPGY 168 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +TD+ + ++ TP V GF+G P P++ E+ ++ Sbjct: 169 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSIDEVFTMLAPNLEVPTEGGSGAGRS 228 Query: 114 -VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++P + V FEVGE V V +GPF + + ++ + ++ V V IFGR TPVEL++ Q Sbjct: 229 AAKKPAAVVDFEVGESVTVMEGPFETLPATISEINSDTQKLKVLVSIFGRETPVELSFGQ 288 Query: 173 VEKI 176 V KI Sbjct: 289 VAKI 292 >gi|299065395|emb|CBJ36564.1| transcription termination factor [Ralstonia solanacearum CMR15] Length = 194 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK S+ R+ R+ L H+ I +PSE VV ++ G K +ERRFFP Sbjct: 20 KRWYVVHAYSGMEKSVQRSLQERIDRASLQHMFGRILVPSEEVVEMKGGHKAVTERRFFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MTD+ +H +K+T KV GF+G G P+P++ E++ IM Q++ V++P Sbjct: 80 GYVLVEMEMTDETWHLVKNTSKVTGFVGGTGNRPTPISQREVDKIMTQIQEGVEKPRPKT 139 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 140 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFGQVEKV 194 >gi|163745521|ref|ZP_02152881.1| transcription antitermination protein NusG [Oceanibulbus indolifex HEL-45] gi|161382339|gb|EDQ06748.1| transcription antitermination protein NusG [Oceanibulbus indolifex HEL-45] Length = 177 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 113/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRASVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDAGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+++ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVADGPFEDFDGMIEEVDEDNQRLKVSVSIFGRETPVELEFTQVNK 175 >gi|37913002|gb|AAR05331.1| predicted transcription antiterminator NusG [uncultured marine alpha proteobacterium HOT2C01] Length = 177 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F Sbjct: 1 MSHKWYIVHAYSGFEKKVAAAIFEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL K MTD+ YH +K PKV GFLG T PS V++SEI I+ +E V P Sbjct: 61 FPGYVLTKMEMTDETYHMVKSLPKVSGFLGHTQGKPSAVSESEINKILQDIEEGVTSPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176 >gi|254486647|ref|ZP_05099852.1| transcription termination/antitermination factor NusG [Roseobacter sp. GAI101] gi|214043516|gb|EEB84154.1| transcription termination/antitermination factor NusG [Roseobacter sp. GAI101] Length = 177 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 82/177 (46%), Positives = 114/177 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGERV V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V Sbjct: 121 IHFEVGERVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177 >gi|77462246|ref|YP_351750.1| transcription antitermination protein nusG [Rhodobacter sphaeroides 2.4.1] gi|126461108|ref|YP_001042222.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|126461122|ref|YP_001042236.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221638100|ref|YP_002524362.1| transcription antitermination protein nusG [Rhodobacter sphaeroides KD131] gi|77386664|gb|ABA77849.1| transcription antitermination protein nusG [Rhodobacter sphaeroides 2.4.1] gi|126102772|gb|ABN75450.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|126102786|gb|ABN75464.1| transcription antitermination protein nusG [Rhodobacter sphaeroides ATCC 17029] gi|221158881|gb|ACL99860.1| Transcription antitermination protein nusG [Rhodobacter sphaeroides KD131] Length = 177 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175 >gi|170729021|ref|YP_001763047.1| NusG antitermination factor [Shewanella woodyi ATCC 51908] gi|169814368|gb|ACA88952.1| NusG antitermination factor [Shewanella woodyi ATCC 51908] Length = 183 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +++ + ++ EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVTKTLHEYIQMHSMEQYFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDKEANAILQRLQETTETPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG V+ VD EK+RV V V+IFGR TPVEL + Q+EK Sbjct: 129 IFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFGQIEK 182 >gi|254453476|ref|ZP_05066913.1| transcription termination/antitermination factor NusG [Octadecabacter antarcticus 238] gi|198267882|gb|EDY92152.1| transcription termination/antitermination factor NusG [Octadecabacter antarcticus 238] Length = 188 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 114/177 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK ESI + GL+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 12 MAKRWYSVSVLSNFEKKIAESIRASVEEHGLEEQIGEVLVPTEEVIEIRRGKKVTAERRF 71 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P + Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE+GE+V VS+GPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K V Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEENQRLKVTVSIFGRATPVELEFTQVSKQV 188 >gi|121602807|ref|YP_988876.1| transcription antitermination protein NusG [Bartonella bacilliformis KC583] gi|120614984|gb|ABM45585.1| transcription termination/antitermination factor NusG [Bartonella bacilliformis KC583] Length = 176 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 106/176 (60%), Positives = 134/176 (76%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV VR+GRKV+SER+F Sbjct: 1 MVARWYIVQAYSNFEKKVAEAISKEAKQKGLDHLFKKIFVPIERVVEVRRGRKVDSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+ A +TD VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS Sbjct: 61 FPGYVLVCAELTDDVYHLIKNTPKVTGFLGSDARPVPISDREAEQILQQVQEGVESPKSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE+V V+DGPF SFNG+V+ V+E++SR+ VEV+IFGR TPV+L + QVEK+ Sbjct: 121 VTFEVGEQVRVADGPFISFNGVVQEVEEDRSRLKVEVLIFGRPTPVDLEFGQVEKL 176 >gi|332040082|gb|EGI76467.1| NusG antitermination factor [Hylemonella gracilis ATCC 19624] Length = 195 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK +I R++R+GL I +P E VV V+ G+K +ER+FFPG Sbjct: 21 RWYVVHAYSGMEKAVERNILERINRAGLQGKFGRILVPMEEVVEVKNGQKRTTERKFFPG 80 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YVL++ VM D+ +H +K T KV GF+G G+ P+P+++ E+ I+NQ++ +P V Sbjct: 81 YVLVEMVMDDESWHLVKHTSKVTGFVGGGKNNRPTPISEEEVMKIVNQMQEGSDKPRHKV 140 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK Sbjct: 141 EFTVGELVRVKEGPFTDFNGAVEEVNYEKSKVRVAVTIFGRSTPVELEFGQVEK 194 >gi|226305205|ref|YP_002765163.1| transcription antitermination protein NusG [Rhodococcus erythropolis PR4] gi|229490716|ref|ZP_04384554.1| transcription antitermination protein NusG [Rhodococcus erythropolis SK121] gi|226184320|dbj|BAH32424.1| transcription antitermination protein NusG [Rhodococcus erythropolis PR4] gi|229322536|gb|EEN88319.1| transcription antitermination protein NusG [Rhodococcus erythropolis SK121] Length = 278 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 88 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 147 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111 +L++ + D+ + +++TP V GF+G PSP+T +E+ + + Sbjct: 148 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLLPQQEQKKQQAAAAAVA 207 Query: 112 ------AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + +P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP Sbjct: 208 AGEAPSESFGKPLIEVDFEVGESVTVMDGPFATLPASISEVNGEQQKLKVLVSIFGRETP 267 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 268 VELNFNQVAKI 278 >gi|167855963|ref|ZP_02478710.1| transcription antitermination protein NusG [Haemophilus parasuis 29755] gi|167852900|gb|EDS24167.1| transcription antitermination protein NusG [Haemophilus parasuis 29755] Length = 192 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW+++Q +S E + ++ + + E+ +P+E VV GR+ +ER+FFP Sbjct: 16 MRWFVLQAFSGFEARVAMTLREYIKLHNMQDQFGEVLVPTEEVVENVGGRRRKTERKFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K P+V+GF+G + P+P++ SE E I+N+V+ +P Sbjct: 76 GYVLVQMEMNDDTWHLVKSVPRVMGFIGGTADKPAPISQSEAERILNRVQETADKPRHRT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE V V +GPF+ F G V+ VD EK RV V V IFGR TPVEL +NQVEK Sbjct: 136 EFHPGEEVRVKEGPFSDFTGTVEEVDYEKGRVKVSVSIFGRATPVELEFNQVEK 189 >gi|163732875|ref|ZP_02140320.1| transcription antitermination protein NusG [Roseobacter litoralis Och 149] gi|161394235|gb|EDQ18559.1| transcription antitermination protein NusG [Roseobacter litoralis Och 149] Length = 177 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+DK YH + +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDKGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNK 175 >gi|171462866|ref|YP_001796979.1| NusG antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192404|gb|ACB43365.1| NusG antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 87/174 (50%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ YS EK + R++RSG+ I +PSE VV ++ G K SERRFFP Sbjct: 16 MRWYVIHAYSGMEKSVKRDLEERIARSGMPEKFGRILVPSEEVVEIKSGTKSVSERRFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ MTD+ +H +K+TPKV GF+G PSP++ +E+ IM+Q++A V +P Sbjct: 76 GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVTKIMDQMQAGVDKPKPKT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FEVGE V V +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK Sbjct: 136 LFEVGEMVRVKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEK 189 >gi|83941516|ref|ZP_00953978.1| transcription termination/antitermination factor NusG [Sulfitobacter sp. EE-36] gi|83847336|gb|EAP85211.1| transcription termination/antitermination factor NusG [Sulfitobacter sp. EE-36] Length = 177 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 81/177 (45%), Positives = 114/177 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTTVAEQELEDQIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLINSINRVTGFLGPQGRPMPMRDAEVTAILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGE+V V+DGPF F+G+++ VD+E R+ V V IFGR TPVEL + QV K V Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMIEEVDDENQRLKVSVSIFGRETPVELEFTQVNKQV 177 >gi|300782525|ref|YP_003762816.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32] gi|299792039|gb|ADJ42414.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32] Length = 288 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R ++ + +I +P+E V ++ G++ +R+ PGY Sbjct: 100 WYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEEVTEIKNGQRKQVQRKVLPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D + +++TP V GF+G PSP+T E+ + + Sbjct: 160 ILVRMDLNDASWSAVRNTPGVTGFVGATSRPSPLTVDEVLKFLAPKVESEAPAKSGKGES 219 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 P V FE+GE V V DGPFA+ + V+ + ++ V V IFGR TPVE Sbjct: 220 TATAAPLGGPAVEVDFEIGESVTVMDGPFATLPATISEVNIDGQKLKVLVSIFGRETPVE 279 Query: 168 LAYNQVEKI 176 L++NQV KI Sbjct: 280 LSFNQVSKI 288 >gi|109896921|ref|YP_660176.1| NusG antitermination factor [Pseudoalteromonas atlantica T6c] gi|109699202|gb|ABG39122.1| transcription antitermination protein nusG [Pseudoalteromonas atlantica T6c] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+VQ +S E + +++ + ++ EI +P+E V+ +R G++ SER+FFP Sbjct: 16 KKWYVVQAFSQYEGRVKKTLLEYIKMHEMEDSFGEILVPTEEVIEMRSGQQRKSERKFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M + +H +K P+V+GF+G + P+P+T E I+N++E V +P Sbjct: 76 GYVLVQMDMNEDSWHLVKSVPRVLGFIGGTSDRPAPITTKEANAILNRLEEGVDKPKPKT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 136 LFEPGEVVRVTDGPFADFNGVVEEVDYEKSRLKVSVLIFGRSTPVELEFGQVEK 189 >gi|264676489|ref|YP_003276395.1| NusG antitermination factor [Comamonas testosteroni CNB-2] gi|299531364|ref|ZP_07044774.1| transcription termination/antitermination factor NusG [Comamonas testosteroni S44] gi|262207001|gb|ACY31099.1| NusG antitermination factor [Comamonas testosteroni CNB-2] gi|298720771|gb|EFI61718.1| transcription termination/antitermination factor NusG [Comamonas testosteroni S44] Length = 195 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194 >gi|117927503|ref|YP_872054.1| transcription antitermination protein nusG [Acidothermus cellulolyticus 11B] gi|117647966|gb|ABK52068.1| transcription antitermination protein nusG [Acidothermus cellulolyticus 11B] Length = 228 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 6/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E +A ++ R+ ++ + ++ +P E VV ++ G++ +R FPG Sbjct: 50 QWYVVHTYAGYENRAKANLENRIQSLNMEDYIYQVEVPQEEVVEIKNGKRQIVKRNIFPG 109 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRP----- 117 YVL++ +TD+ + ++ TP V GF+G P+P+T E+ + + + Sbjct: 110 YVLVRMELTDESWAAVRYTPAVTGFVGPSASKPAPLTLDEVLRFLAPAVKSRKEAAAAAT 169 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVGE V V DGPFA+ + ++ ++ ++ V V IFGR TPVEL++NQV KI Sbjct: 170 PKIVDFEVGESVTVMDGPFATLPATISEINPDQQKLKVLVSIFGRETPVELSFNQVAKI 228 >gi|88861455|ref|ZP_01136082.1| component in transcription antitermination; couples translation and transcription [Pseudoalteromonas tunicata D2] gi|88816537|gb|EAR26365.1| component in transcription antitermination; couples translation and transcription [Pseudoalteromonas tunicata D2] Length = 185 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 79/172 (45%), Positives = 113/172 (65%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q +S EK+ ++I + L+H EI +P+E VV +R G+K SER+FFPG Sbjct: 11 RWYVIQAFSGFEKRVQQTILEHIRIQNLEHFFGEILVPTEEVVEMRAGQKRKSERKFFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ M D +H + P+V+GF+G E P+P++ E + I+N+++ P + Sbjct: 71 YVLVQMDMNDASWHLVNSIPRVMGFIGGTKERPAPISSKEADRILNRLQENADSPKPATL 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE GE V V+DGPFA F G+V+ VD EKSRV V V+IFGR TPVEL + QVE Sbjct: 131 FEPGEVVRVTDGPFADFTGVVEEVDYEKSRVKVSVLIFGRSTPVELEFGQVE 182 >gi|254438013|ref|ZP_05051507.1| transcription termination/antitermination factor NusG [Octadecabacter antarcticus 307] gi|198253459|gb|EDY77773.1| transcription termination/antitermination factor NusG [Octadecabacter antarcticus 307] Length = 188 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 113/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E+I + GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 12 MAKRWYSVSVLSNFEKKIAETIRASVEEHGLEEQIGEVLVPTEEVIEVRRGKKVTAERRF 71 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D YH I +V GFLG P P+ D+E++ I+ +VE P + Sbjct: 72 MPGYVLVHMEMSDDGYHLINSINRVTGFLGPQGRPMPMRDAEVQQILGRVEEGQDAPRTL 131 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V VS+GPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 132 INFEIGEKVKVSEGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEFTQVSK 186 >gi|298246509|ref|ZP_06970315.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963] gi|297553990|gb|EFH87855.1| NusG antitermination factor [Ktedonobacter racemifer DSM 44963] Length = 196 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 105/172 (61%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ + YS E K + R++ + + + +P E V +++G++ +R+ FPGY Sbjct: 25 WFAIHTYSGYENKVRSHLEARIASMDMRGKIFRVIVPMEEEVEIKQGQRRTVQRKVFPGY 84 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL++ +M+D+ ++ +++TP V F+G+G P P+ + EI+ I+ QV ++P + V F Sbjct: 85 VLVEMIMSDEAWYVVRNTPGVTSFVGSGNKPVPLQEHEIKTILKQVTKETEKPKAKVSFS 144 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V DGPFA F G V +++ ++++V V V FGR TPV L + QVEKI Sbjct: 145 KGQSVRVVDGPFADFIGTVSDLNMDRNKVTVLVSFFGRETPVILDFLQVEKI 196 >gi|146278581|ref|YP_001168740.1| NusG antitermination factor [Rhodobacter sphaeroides ATCC 17025] gi|145556822|gb|ABP71435.1| transcription antitermination protein nusG [Rhodobacter sphaeroides ATCC 17025] Length = 178 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEEVIEVRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+++ YH I +V GFLG P P+ DSE+ I+N+VE +P S Sbjct: 61 MPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSEVNTILNRVEEGEAQPRSL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + +++GE V V+DGPF F+G+V++VDEE SR+ V V IFGR TPVEL + QV K Sbjct: 121 IRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIFGRATPVELEFTQVAK 175 >gi|221069403|ref|ZP_03545508.1| NusG antitermination factor [Comamonas testosteroni KF-1] gi|220714426|gb|EED69794.1| NusG antitermination factor [Comamonas testosteroni KF-1] Length = 195 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++RS + I +PSE VV +R G + +ERR FPG Sbjct: 22 RWYIVHAYSGMEKAVERNIAERIARSDMQSKFGRILVPSEEVVEMRNGTRRTTERRLFPG 81 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V Sbjct: 82 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVDQMQEGTEKPRHKVE 141 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPFA FNG V+ V+ EK+R+ V V IFGR TPVEL ++QVEK Sbjct: 142 FMVGEMVRVKEGPFADFNGSVEEVNYEKNRLRVSVTIFGRATPVELEFSQVEK 194 >gi|330814211|ref|YP_004358450.1| transcription antitermination protein NusG [Candidatus Pelagibacter sp. IMCC9063] gi|327487306|gb|AEA81711.1| transcription antitermination protein NusG [Candidatus Pelagibacter sp. IMCC9063] Length = 175 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 86/174 (49%), Positives = 121/174 (69%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIVQ YS EKK E I L ++ L ++ +P++ V ++KG+K ++++FP Sbjct: 2 MKWYIVQSYSGFEKKVSEQIQEELDKADLSDHFDQVLVPTQDVTEIKKGKKTIVKKKYFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL K +MTD++YH IKD KV GFLG PSP+ + E++ I+ +E ++ P SSV Sbjct: 62 GYVLAKMIMTDQIYHLIKDLKKVSGFLGPQGKPSPIHEDEVQKILGNMEESISNPTSSVI 121 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F +GE+V VSDGPFASFNG+V+ +DE+KSR+ V V IFGR TPV+L Y QVEK+ Sbjct: 122 FTIGEQVKVSDGPFASFNGLVEEIDEDKSRLKVSVSIFGRPTPVDLDYAQVEKL 175 >gi|302336397|ref|YP_003801604.1| transcription antitermination protein nusG [Olsenella uli DSM 7084] gi|301320237|gb|ADK68724.1| transcription antitermination protein nusG [Olsenella uli DSM 7084] Length = 182 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 5/181 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M RWY+V YS E K + R+ GL+ + +I IP+E V ++ G ++ E + Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLEDQIVDIQIPTEEVTEIKDGGKRETKESK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV- 118 FPGYVL++ + D + +++TP V GF+G P+P+ SE IM + + Sbjct: 61 VFPGYVLVRMDVDDNSWAVVRNTPGVTGFVGIDGKPTPLRRSEFNKIMRRTNPRGAQEPK 120 Query: 119 ---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ V V GP A F+G+V V E +V V + IFGR TPVEL +Q+ Sbjct: 121 RTTMTTDLEVGQAVKVVSGPLADFDGLVSEVMPEAGKVKVMLTIFGRETPVELTLDQIAT 180 Query: 176 I 176 I Sbjct: 181 I 181 >gi|121606533|ref|YP_983862.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120595502|gb|ABM38941.1| transcription antitermination protein nusG [Polaromonas naphthalenivorans CJ2] Length = 198 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS EK A +I R++R+G+ +P+E VV ++ G+K +ERRFFP Sbjct: 24 MQWYVVHAYSGMEKAAERNIVERINRAGMQSKFGRFLVPTEEVVEIKNGQKKTTERRFFP 83 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H +K T KV GF+G P+P+++ E++ I++Q++ +P V Sbjct: 84 GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQVGTDKPRHKV 143 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG V+ V+ EK++V V V IFGR TPVEL ++Q+EK Sbjct: 144 EFEAGEYVRVKDGPFTDFNGTVEEVNYEKNKVRVSVTIFGRATPVELEFSQIEK 197 >gi|163739418|ref|ZP_02146828.1| NusG antitermination factor [Phaeobacter gallaeciensis BS107] gi|161387171|gb|EDQ11530.1| transcription antitermination protein [Phaeobacter gallaeciensis BS107] Length = 177 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175 >gi|134103300|ref|YP_001108961.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004481|ref|ZP_06562454.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915923|emb|CAM06036.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] Length = 283 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PGY Sbjct: 98 WYVVHSYAGYENKVKTNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKLVQRKVLPGY 157 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119 +L++ + D + +++TP V GF+G +PSP++ ++ + +P + Sbjct: 158 ILVRMELNDASWSAVRNTPGVTGFIGATSHPSPLSIDDVLKFLAPRAEKEAKPEAGKKAA 217 Query: 120 ---------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 V FEVGE + V DGPFA+ + V+ + ++ V V IFGR TPVEL++ Sbjct: 218 APAAAKPSVEVDFEVGESITVMDGPFATLPATISEVNADAQKLKVLVSIFGRETPVELSF 277 Query: 171 NQVEKI 176 NQV KI Sbjct: 278 NQVSKI 283 >gi|319404387|emb|CBI77990.1| transcription antitermination protein [Bartonella rochalimae ATCC BAA-1498] Length = 182 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 104/175 (59%), Positives = 136/175 (77%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+FF Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QV+ V+ P SS+ Sbjct: 68 PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVKEGVESPKSSM 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+ Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182 >gi|119713237|gb|ABL97303.1| putative transcription antiterminator NusG [uncultured marine bacterium HF10_12C08] Length = 177 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT +WYIV YS EKK +I + ++ +EI +P+E VV V+KG+K N+ER+F Sbjct: 1 MTHKWYIVHAYSGFEKKVAAAILEKAKTKNIESAFSEIIVPTEEVVEVKKGKKRNAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL K MTD+ YH +K PKV GFLG T PS V +S+I I+ +E V P Sbjct: 61 FPGYVLTKMEMTDETYHMVKALPKVSGFLGHTQGKPSAVPESDINKILQDIEEGVTSPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S+ FEVGE+V VSDGPFASFNG+++ +DEE++RV V V IFGR TPVEL Y QVEK Sbjct: 121 SITFEVGEQVRVSDGPFASFNGLIEEIDEERARVKVSVSIFGRSTPVELEYTQVEK 176 >gi|148555476|ref|YP_001263058.1| transcription antitermination protein nusG [Sphingomonas wittichii RW1] gi|148500666|gb|ABQ68920.1| transcription antitermination protein nusG [Sphingomonas wittichii RW1] Length = 179 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 87/179 (48%), Positives = 122/179 (68%), Gaps = 4/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K E+I +R GL+ LV + +P+E+V VR+G+K+ S+R+F Sbjct: 1 MA-RWYIIHAYSGFENKVREAILADAARLGLEQLVEAVEVPTEKVTEVRRGKKITSDRKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRP 117 FPGYVL K M D VYH +K+TPKV GFLG+ P P++++E I+N + AA + Sbjct: 60 FPGYVLAKLSMNDDVYHLVKNTPKVTGFLGSSGKPQPISEAEAARILNTKEEAAAAAPKT 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +E+G++V V DGPFASFNG+V+ +D ++SRV V V IFGR TPVEL + QVE++ Sbjct: 120 KLKVDYEIGDQVKVLDGPFASFNGVVEELDFDRSRVKVSVSIFGRATPVELEFEQVERV 178 >gi|271962615|ref|YP_003336811.1| transcription antiterminator-like protein [Streptosporangium roseum DSM 43021] gi|270505790|gb|ACZ84068.1| Transcription antiterminator-like protein [Streptosporangium roseum DSM 43021] Length = 266 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + +I R ++ + ++ +P+ V V+ G++ + R PGY Sbjct: 89 WYVIHSYAGYENRVKSNIETRTQSLNMEDYIFQVEVPTHHVTEVKSGKRQLVKERVLPGY 148 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119 VL++ +TD+ + +++TP V GF+G PSP++ E+ ++ + + + Sbjct: 149 VLVRMDLTDESWSAVRNTPGVTGFVGLSNKPSPLSLDEVAKLLAPEPSEEVKKSTAKASA 208 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V FE+GE V V DGPFA+ V + E ++ V V IFGR TPVEL++NQV KI Sbjct: 209 ATVDFEIGESVTVMDGPFATLPATVSEISAESQKLKVLVSIFGRETPVELSFNQVSKI 266 >gi|83949812|ref|ZP_00958545.1| transcription termination/antitermination factor NusG [Roseovarius nubinhibens ISM] gi|83837711|gb|EAP77007.1| transcription termination/antitermination factor NusG [Roseovarius nubinhibens ISM] Length = 177 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTEQALEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEETPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD++ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEVGEKVKVNDGPFEGFDGMVEEVDDDNQRLKVTVSIFGRETPVELEFTQVAK 175 >gi|15612681|ref|NP_240984.1| transcription antitermination protein NusG [Bacillus halodurans C-125] gi|14423809|sp|Q9KGE7|NUSG_BACHD RecName: Full=Transcription antitermination protein nusG gi|10172730|dbj|BAB03837.1| transcriptional antitermination factor [Bacillus halodurans C-125] Length = 178 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ + + + +P E V+ G+ R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E++ I+ Q+ + Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQM-GMQEER 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++ E V V +GPFA+F G ++ + +K ++ V V +FGR TPVEL + Q+EKI Sbjct: 120 QVEIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178 >gi|254467081|ref|ZP_05080492.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium Y4I] gi|206687989|gb|EDZ48471.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium Y4I] Length = 177 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVETPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDE+ ++ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQKLKVTVSIFGRETPVELDFAQVTK 175 >gi|226361072|ref|YP_002778850.1| transcription antitermination protein NusG [Rhodococcus opacus B4] gi|226239557|dbj|BAH49905.1| transcription antitermination protein NusG [Rhodococcus opacus B4] Length = 288 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 99 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 158 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP+T +E+ + + + Sbjct: 159 ILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQAAAATVSA 218 Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 +P+ V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 219 GETGGETFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 278 Query: 167 ELAYNQVEKI 176 EL++ QV KI Sbjct: 279 ELSFTQVAKI 288 >gi|126732293|ref|ZP_01748093.1| transcription termination/antitermination factor NusG [Sagittula stellata E-37] gi|126707162|gb|EBA06228.1| transcription termination/antitermination factor NusG [Sagittula stellata E-37] Length = 182 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + GL + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 6 MAKRWYSVSVLSNFEKKIAEQIRTSVEEQGLQDQIDEVMVPTEEVIEVRRGKKVTTERRF 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I + +V GFLG P P+ D+E+E I+ +V+ + + P + Sbjct: 66 MPGYVLVHMEMSDRGYHLISNINRVTGFLGPQGRPMPMRDAEVEAILGRVQESDEAPRTL 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 126 IHFEIGERVKVNDGPFEGFDGMVEGVDEDNQRLSVSVSIFGRETPVELDFTQVSK 180 >gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296026608|gb|ADG77378.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 276 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 22/195 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 82 WYVIHTYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQQKRVNRKVLPGY 141 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP+T +E+ + Sbjct: 142 ILVRMDLNDESWGAVRNTPGVTGFVGLTSKPSPLTMNEVVKFLLPESARTKPAKDKGAAA 201 Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 A Q P V FEVGE V V DGPFA+ + ++ E+ ++ V V IFGR Sbjct: 202 DGAAAASGGAVSQGPAVEVDFEVGESVTVMDGPFATLPASISEINAEQRKLKVLVSIFGR 261 Query: 163 VTPVELAYNQVEKIV 177 TPVELA+NQVEKI+ Sbjct: 262 ETPVELAFNQVEKII 276 >gi|317509041|ref|ZP_07966672.1| transcription termination/antitermination factor NusG [Segniliparus rugosus ATCC BAA-974] gi|316252696|gb|EFV12135.1| transcription termination/antitermination factor NusG [Segniliparus rugosus ATCC BAA-974] Length = 263 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 16/189 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG Sbjct: 75 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 134 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 Y+L++ + D+ + T+++TP V GF+GT D ++ ++ + E Sbjct: 135 YILVRMDLNDESWSTVRNTPGVTGFVGTSRPTPLTLDDVVKFLLPRQEPKKTAPAAKAKQ 194 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 PV+ V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPVE Sbjct: 195 GDGFAAAIAPVALVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPVE 254 Query: 168 LAYNQVEKI 176 L++NQV KI Sbjct: 255 LSFNQVTKI 263 >gi|85858133|ref|YP_460335.1| transcription antitermination protein [Syntrophus aciditrophicus SB] gi|85721224|gb|ABC76167.1| transcription antitermination protein [Syntrophus aciditrophicus SB] Length = 176 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 109/173 (63%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS E K +S+ R+ +G+ ++I IP E VV + G K S+R+F Sbjct: 1 MAFKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+K + D +H +KDTPKV GF+G+ E PSP+ D ++E + +++ +P Sbjct: 61 FPGYILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPK 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 FEVG+ V + DGPF +F+G++ V EK ++ V V IFGR TPVEL + QV Sbjct: 121 FKFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >gi|311086362|gb|ADP66443.1| transcription antitermination protein NusG [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 181 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFP Sbjct: 7 KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRSGQRRKSEYKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P Sbjct: 67 GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >gi|149203664|ref|ZP_01880633.1| transcription termination/antitermination factor NusG [Roseovarius sp. TM1035] gi|149142781|gb|EDM30823.1| transcription termination/antitermination factor NusG [Roseovarius sp. TM1035] Length = 177 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVTENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175 >gi|163740207|ref|ZP_02147601.1| transcription termination/antitermination factor NusG [Phaeobacter gallaeciensis 2.10] gi|161386065|gb|EDQ10440.1| transcription termination/antitermination factor NusG [Phaeobacter gallaeciensis 2.10] Length = 177 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD++ ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDDNQKLKVTVSIFGRETPVELDFTQVTK 175 >gi|110634174|ref|YP_674382.1| transcription antitermination protein NusG [Mesorhizobium sp. BNC1] gi|9957208|gb|AAG09265.1| NusG [EDTA-degrading bacterium BNC1] gi|110285158|gb|ABG63217.1| transcription antitermination protein nusG [Chelativorans sp. BNC1] Length = 174 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 101/175 (57%), Positives = 131/175 (74%), Gaps = 2/175 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYIV YSN EKK ESI + + GL +L+ + +P+E+VV VR+GRKV++ER+F Sbjct: 1 MA-RWYIVHAYSNFEKKVAESIEEQARQKGLSNLIENVVVPTEKVVEVRRGRKVDAERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KA +TD V+ IK+TPKV GFLG P P+T++E + I+ QV+ V+RP S Sbjct: 60 FPGYVLVKADLTDAVFSLIKNTPKVTGFLG-DSKPVPITEAEAQRILTQVQEGVERPKPS 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+GE+V VSDGPFASFNG V+ VDEE+SR+ VEV IFGR PV+L + QVEK Sbjct: 119 VTFEIGEQVRVSDGPFASFNGFVQEVDEERSRLKVEVSIFGRAVPVDLEFGQVEK 173 >gi|254512261|ref|ZP_05124328.1| transcription termination/antitermination factor NusG [Rhodobacteraceae bacterium KLH11] gi|221535972|gb|EEE38960.1| transcription termination/antitermination factor NusG [Rhodobacteraceae bacterium KLH11] Length = 177 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDDIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P Sbjct: 61 MPGYVLVHMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEEAPKLM 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDFTQVTK 175 >gi|319408378|emb|CBI82033.1| transcription antitermination protein [Bartonella schoenbuchensis R1] Length = 182 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 107/175 (61%), Positives = 138/175 (78%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV VR+GR+V+SER+FF Sbjct: 8 AARWYIVQAYSNFEKKVAEAIEKEAKQKGLDHLFEKIFVPTERVVEVRRGRRVDSERKFF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D EIEHI+ QV+ V+ P SS+ Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREIEHILKQVQEGVESPKSSI 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+ Sbjct: 128 LFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVIIFGRPTPVDLEFSQVEKL 182 >gi|15616668|ref|NP_239880.1| transcription antitermination protein NusG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681425|ref|YP_002467810.1| transcription antitermination protein NusG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681981|ref|YP_002468365.1| transcription antitermination protein NusG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471100|ref|ZP_05635099.1| transcription antitermination protein NusG [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133951|sp|P57151|NUSG_BUCAI RecName: Full=Transcription antitermination protein nusG gi|25299609|pir||F84934 transcription antitermination protein nusG [imported] - Buchnera sp. (strain APS) gi|10038731|dbj|BAB12766.1| transcription antitermination protein nusG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621714|gb|ACL29870.1| transcription antitermination protein NusG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624268|gb|ACL30423.1| transcription antitermination protein NusG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085787|gb|ADP65869.1| transcription antitermination protein NusG [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086940|gb|ADP67020.1| transcription antitermination protein NusG [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 181 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +SI + + ++ L E+ +PS+ VV +R G++ SE +FFP Sbjct: 7 KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ MTD +H I++ PKV+GF+G + PSP++D E+E I+N++ +P Sbjct: 67 GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + QVEK Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >gi|108804986|ref|YP_644923.1| transcription antitermination protein nusG [Rubrobacter xylanophilus DSM 9941] gi|108766229|gb|ABG05111.1| transcription antitermination protein nusG [Rubrobacter xylanophilus DSM 9941] Length = 176 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS E K ++ R+ GL EI IP+E+V+ ++ G+KV + R FP Sbjct: 2 KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSSV 121 GY+L+ M D + I+ TP V +G+G+ P+P++ +E+E +++ ++ ++V Sbjct: 62 GYILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKATV 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F++GE V V GP + F G + +++ ++S+V V V IFGR TPVEL++NQV K+ Sbjct: 122 DFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176 >gi|114331777|ref|YP_747999.1| transcription antitermination protein NusG [Nitrosomonas eutropha C91] gi|114308791|gb|ABI60034.1| transcription antitermination protein nusG [Nitrosomonas eutropha C91] Length = 177 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 81/177 (45%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V YS EK +++ R+ + EI IP E VV V+ G+K SER+F Sbjct: 1 MSKKWYAVHTYSGFEKSVKKALRDRIVLHKFEDKFGEILIPVEEVVEVKGGQKNISERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP Y+LI+ MTD+ +H +K TPKV GF+G P P++ EIE I NQV V++P Sbjct: 61 FPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSMQPIPISRKEIESIFNQVREGVEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE GE V V +GPF F+G V+ V+ +K+++ V V IFGR TPVEL ++QV+KI Sbjct: 121 KVIFEAGEAVRVKEGPFTDFHGNVEEVNYDKNKLRVSVSIFGRPTPVELDFHQVDKI 177 >gi|90407970|ref|ZP_01216143.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3] gi|90310908|gb|EAS39020.1| transcription antitermination protein NusG [Psychromonas sp. CNPT3] Length = 182 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +++ + + ++ EI +P+E VV +R G+K SER+FFP Sbjct: 8 MRWYVVQAFSGYEGRVQKTLIEHIKLNEMEEYFGEILVPTEEVVEMRAGQKRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+T +V+GF+G E P+P++ E+E+I+N+++ +V P Sbjct: 68 GYVLVQMAMNDASWHLVKNTDRVMGFIGGTKERPAPISPKEVENILNRLQESVDSPRPRT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V DGPF+ F+G V+ VD +KSR+ V V IFGR TPV+L ++QVEK Sbjct: 128 LFEAGQIVRVVDGPFSDFSGTVEEVDYDKSRLKVSVSIFGRATPVDLEFSQVEK 181 >gi|319407388|emb|CBI81039.1| transcription antitermination protein [Bartonella sp. 1-1C] Length = 182 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 105/175 (60%), Positives = 136/175 (77%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQ YSN EKK E+I + GLDHL +I +P+ERVV +R+GRKV+SER+FF Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPTERVVEIRRGRKVDSERKFF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS+ Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVESPKSSM 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L + QVEK+ Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFGQVEKL 182 >gi|269955419|ref|YP_003325208.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269304100|gb|ACZ29650.1| NusG antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 265 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + +I +P E V ++ +K R PGY Sbjct: 80 WYVIHSYAGYENRVKANLENRIQSLNMEDYIFQIEVPMEEVTEIKNAQKKTVRRVRIPGY 139 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE------------- 111 VL++ +TD+ + ++ TP V GF+G P P+T E+ ++ Sbjct: 140 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPTMLEAPAAAGKPSTA 199 Query: 112 -AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 A + V FEVGE V V+DGPF + + ++ E ++ V V IFGR TPVEL++ Sbjct: 200 AAKAKAAAVVVDFEVGESVTVTDGPFDTLPATISEINVEAQKLKVLVSIFGRETPVELSF 259 Query: 171 NQVEKI 176 NQV KI Sbjct: 260 NQVAKI 265 >gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Thermomonospora curvata DSM 43183] gi|268313509|gb|ACY99883.1| NusG antitermination factor [Thermomonospora curvata DSM 43183] Length = 238 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 7/179 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E + +I R ++ + ++ +P V +++G++ + PGY Sbjct: 60 WYVVHSYAGYENRVKANIETRTQSLNMEDYIFQVEVPQHEVTEIKQGKRQKVNEKMLPGY 119 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------RP 117 +L++ +TD+ + +++TP V GF+G PSP++ E+ ++ + + Sbjct: 120 ILVRMELTDESWAAVRNTPGVTGFVGLLNKPSPLSLDEVAKLLAPPPEEEKGKAKEQTKV 179 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+V FEVGE V V DGPF + V ++ E+ ++ V V IFGR TPVEL++NQV KI Sbjct: 180 TSTVEFEVGESVTVMDGPFQTLPATVSEINVEQQKLKVLVSIFGRETPVELSFNQVSKI 238 >gi|254823017|ref|ZP_05228018.1| transcription antitermination protein NusG [Mycobacterium intracellulare ATCC 13950] Length = 267 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 78 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 137 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS +T ++ + Sbjct: 138 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 197 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 198 TAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 257 Query: 167 ELAYNQVEKI 176 EL ++QV K+ Sbjct: 258 ELTFSQVSKL 267 >gi|149913528|ref|ZP_01902061.1| transcription antitermination protein NusG [Roseobacter sp. AzwK-3b] gi|149812648|gb|EDM72477.1| transcription antitermination protein NusG [Roseobacter sp. AzwK-3b] Length = 177 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EK+ E I ++ GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRQSVAEQGLEEEIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLVNSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + +E+GERV V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHYEIGERVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRETPVELEFTQVTK 175 >gi|300022529|ref|YP_003755140.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299524350|gb|ADJ22819.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 191 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 95/173 (54%), Positives = 124/173 (71%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV Y+N E+K ++I R GLD L EI +P+E VV V++GRK+ +ER+F PG Sbjct: 17 RWYIVHAYTNFERKVADAIRERAKAGGLDDLFEEIVVPTEEVVEVKRGRKIPTERKFLPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K MTD+ + IK+TPKV GFLG P P+ + E I+NQV+ V+RP ++ F Sbjct: 77 YVLVKMKMTDQAFVMIKNTPKVTGFLGADNKPMPIPEDEALRILNQVKEGVERPRPTITF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+GE V V+DGPFASF G+V++VDEE+SRV V V IFGR TPVEL + QVEKI Sbjct: 137 EIGENVKVADGPFASFTGVVEDVDEERSRVKVAVSIFGRPTPVELEFGQVEKI 189 >gi|51244964|ref|YP_064848.1| transcription antitermination protein NusG [Desulfotalea psychrophila LSv54] gi|50876001|emb|CAG35841.1| probable transcription antitermination protein NusG [Desulfotalea psychrophila LSv54] Length = 177 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 73/174 (41%), Positives = 112/174 (64%), Gaps = 1/174 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYI+Q +S E+K ++ R+ + GL+ +I +P+E+VV + KG + S ++F Sbjct: 1 MAKQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKF 60 Query: 61 FPGYVLIKAVMTDKVYH-TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+LI +TD+ +H ++ P+V+GF+G NP P++D E I+ +++ +RP Sbjct: 61 FPGYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V F+VGE V V DGPF++F G+V V +K RV V V IFGR TPVEL + QV Sbjct: 121 KVIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >gi|319405861|emb|CBI79493.1| transcription antitermination protein [Bartonella sp. AR 15-3] Length = 182 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 104/175 (59%), Positives = 137/175 (78%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQVYSN EKK E+I + GLDHL ++ +P+ERVV +R+GRKV+SER+FF Sbjct: 8 AARWYIVQVYSNFEKKVAEAIDKEAKQKGLDHLFKKVFVPTERVVEIRRGRKVDSERKFF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+L+ A +TD+VYH IK+TPKV GFLG+ P P++D E E I+ QVE V+ P SS+ Sbjct: 68 PGYILVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDREAEQILKQVEEGVESPKSSM 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V+DGPF SFNGIV+ V++E+SR+ VEV+IFGR TPV+L ++QVEK+ Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEKERSRLKVEVLIFGRPTPVDLEFDQVEKL 182 >gi|297537519|ref|YP_003673288.1| NusG antitermination factor [Methylotenera sp. 301] gi|297256866|gb|ADI28711.1| NusG antitermination factor [Methylotenera sp. 301] Length = 178 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 118/178 (66%), Gaps = 1/178 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY VQ +S EK + + R+ R+GL +I +P E V+ ++ G+K SER+ Sbjct: 1 MSMKWYAVQAFSGFEKSVQKGLEERIVRTGLQEQFGQILVPIEEVIEMKAGQKTISERKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ MTD+ +H +K TP+V F+G + P+P+ D E++ I+ +++ + P Sbjct: 61 YPGYVLVQMAMTDESWHLVKSTPRVTAFIGGSAQKPTPIKDKEVDIILQRIDDSKSNPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V + DGPF F+G V++V+ EKS++HV VVIFGR TPVEL ++Q+EK V Sbjct: 121 KLTFEKGESVRIVDGPFKDFSGNVEDVNYEKSKLHVSVVIFGRSTPVELEFSQIEKEV 178 >gi|319899061|ref|YP_004159154.1| transcription antitermination protein [Bartonella clarridgeiae 73] gi|319403025|emb|CBI76580.1| transcription antitermination protein [Bartonella clarridgeiae 73] Length = 182 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 105/175 (60%), Positives = 136/175 (77%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQ YSN EKK E+I + GLDHL +I +P ERVV +R+GRKV+SER+FF Sbjct: 8 AARWYIVQAYSNFEKKVAEAIDKEAKQKGLDHLFKKIFVPIERVVEIRRGRKVDSERKFF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ A +TD+VYH IK+TPKV GFLG+ P P++D E+E I+ QV+ V+ P SS+ Sbjct: 68 PGYVLVCAELTDEVYHLIKNTPKVTGFLGSDARPVPISDCEVEQILKQVKEGVEAPKSSM 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE+V V+DGPF SFNGIV+ V+EE+SR+ VEV+IFGR TPV+L ++QVEK+ Sbjct: 128 SFEVGEQVRVADGPFVSFNGIVQEVEEERSRLKVEVLIFGRPTPVDLEFDQVEKL 182 >gi|153869595|ref|ZP_01999148.1| Transcription termination factor [Beggiatoa sp. PS] gi|152073936|gb|EDN70849.1| Transcription termination factor [Beggiatoa sp. PS] Length = 187 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 11/186 (5%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YSN EK S+ R+ SGL +I +P+E VV +R G S+R+ Sbjct: 1 MALRWYVVHTYSNFEKAVKVSLEERIRHSGLHDKFGQILVPTEEVVEMRDGVTRKSDRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109 +PGYVL++ M D+ +H +K+ PKV+GF+G G +P+P++++E E I+ + Sbjct: 61 YPGYVLVQMEMNDETWHIVKNVPKVMGFIGGGTAERKGKANQFFSPTPLSEAEAEAILQR 120 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 V+ ++P FEVGE V V +GPF FNG+V+ V+ EK+R+ V V IFGR TPVEL Sbjct: 121 VQEGSEKPRPKTLFEVGEVVRVKEGPFTDFNGVVEEVNYEKNRLRVAVRIFGRSTPVELE 180 Query: 170 YNQVEK 175 + QVEK Sbjct: 181 FGQVEK 186 >gi|124268640|ref|YP_001022644.1| transcription antitermination protein NusG [Methylibium petroleiphilum PM1] gi|124261415|gb|ABM96409.1| transcription antitermination protein nusG [Methylibium petroleiphilum PM1] Length = 192 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK ++ R+ R+G+ I +P+E VV ++ G+K +ERRFFPG Sbjct: 19 RWYVVHAYSGMEKAVERNLRERIDRAGMQAKFGRILVPTEEVVEMKNGKKAVTERRFFPG 78 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ +M D+ +H +K T KV GF+G P+P++++E+ I++Q++ +++P V Sbjct: 79 YVLVEMLMDDESWHLVKHTSKVTGFVGGAKNRPAPISEAEVMKIVHQMQEGIEKPRPKVE 138 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V V +GPF FNG ++ V+ +KS+V V V IFGR TPVEL +++VEK+ Sbjct: 139 WEVGELVRVKEGPFTDFNGAIEEVNYDKSKVRVSVTIFGRSTPVELDFHEVEKV 192 >gi|126737141|ref|ZP_01752876.1| transcription termination/antitermination factor NusG [Roseobacter sp. SK209-2-6] gi|126721726|gb|EBA18429.1| transcription termination/antitermination factor NusG [Roseobacter sp. SK209-2-6] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175 >gi|118602793|ref|YP_904008.1| transcription antitermination protein nusG [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567732|gb|ABL02537.1| transcription antitermination protein nusG [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY++ S E K +I + R GL+ LV E+ +P+E+VV ++ G+K +ER+F Sbjct: 1 MSKKWYVLHARSGFEAKVKIAIEESVIREGLEDLVGEVFVPTEQVVELKDGQKKTAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+L+ +T+ + +K+T VIGF+G+ PSP+T E++ I+ +V+ +P Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGSSSGKPSPITQREVDKILARVQEGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK Sbjct: 121 KVAYQPGEEILVVDGPFNEFNGLVQAVDYEKNFLKVEVLIFGRSTSVELEFSQVEK 176 >gi|94497192|ref|ZP_01303764.1| NusG antitermination factor [Sphingomonas sp. SKA58] gi|94423297|gb|EAT08326.1| NusG antitermination factor [Sphingomonas sp. SKA58] Length = 178 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 109/176 (61%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ESI R GL LV ++ +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFESKVKESILAEAERMGLSQLVEQVEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL K M D +YH +K+TPKV GFLG+ P +++ E + A P Sbjct: 60 MPGYVLAKLSMNDDIYHLVKNTPKVTGFLGSSGKPQAISEGEAARYFGAQKEAEAAPKHK 119 Query: 121 --VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V +E+G+ V V DGPFASFNG+V+ +D EK+RV V V IFGR TPVEL + QVE Sbjct: 120 VNVDYEIGDSVKVLDGPFASFNGVVEELDFEKNRVKVSVSIFGRATPVELDFEQVE 175 >gi|85706805|ref|ZP_01037896.1| transcription termination/antitermination factor NusG [Roseovarius sp. 217] gi|85668598|gb|EAQ23468.1| transcription termination/antitermination factor NusG [Roseovarius sp. 217] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRQSVVENGLEDEIDEVLVPTEEVIEIRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVNAILNRVQEGEESPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVSVSIFGRETPVELEFTQVTK 175 >gi|322434556|ref|YP_004216768.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321162283|gb|ADW67988.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 116/173 (67%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+ YS E+K ES+ R+ L + + I IP+E V +R G+K ER F PG Sbjct: 51 KWYIIHAYSGFERKVRESLESRIHAYNLQNRIGRIMIPTEPVTELRNGKKYTIERVFLPG 110 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ + + ++H IK+TP+V GFLGTG++P +++ E+ I+ + + + +P + F Sbjct: 111 YVLVEMELDNDLWHVIKNTPRVTGFLGTGDSPVALSEQEVSSILFRTDVSKDKPSMKIKF 170 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V +++GPFA+F+G+V +++E+K + V V IFGR TPVE+ +++V+K+ Sbjct: 171 AKGEQVRINEGPFANFSGVVDDLNEDKQTLKVMVSIFGRSTPVEIEFSKVDKM 223 >gi|169630973|ref|YP_001704622.1| transcription antitermination protein NusG [Mycobacterium abscessus ATCC 19977] gi|169242940|emb|CAM63968.1| Transcription antitermination protein NusG [Mycobacterium abscessus] Length = 264 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 22/194 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + +I +P+E V ++ G++ R+ PGY Sbjct: 71 WYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQRKQVNRKVLPGY 130 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 131 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQAPAKKPAKGAASAD 190 Query: 108 -----NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + ++RPV V FEVGE V V+DGPFA+ + V+ E+ R+ V V IFGR Sbjct: 191 AATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQRLKVLVSIFGR 250 Query: 163 VTPVELAYNQVEKI 176 TPVEL + QVEK+ Sbjct: 251 ETPVELNFTQVEKL 264 >gi|315122750|ref|YP_004063239.1| transcription antitermination protein NusG [Candidatus Liberibacter solanacearum CLso-ZC1] gi|289546834|gb|ADD10127.1| transcription antitermination protein NusG [Candidatus Liberibacter solanacearum] gi|313496152|gb|ADR52751.1| transcription antitermination protein NusG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 142/177 (80%), Positives = 167/177 (94%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT WYIVQVYSNCEKK VES+ GRL+R+GLD+LVTEIT+PSE+VVSVR+GRKVNSERRF Sbjct: 1 MTSHWYIVQVYSNCEKKTVESMLGRLNRAGLDNLVTEITVPSEKVVSVRRGRKVNSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL+KAVMTD+VYHTI++TPKV+GFLG+G+NPSPV+DSEIEHIM Q+EA+V +PVS+ Sbjct: 61 FPGYVLLKAVMTDEVYHTIRNTPKVMGFLGSGKNPSPVSDSEIEHIMGQIEASVHKPVST 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE+GER+CVSDGPFASFNGIVK+VDEEKSR+ VEV IFGR TPVELAY+QVEKIV Sbjct: 121 IIFEIGERICVSDGPFASFNGIVKDVDEEKSRLKVEVSIFGRATPVELAYSQVEKIV 177 >gi|320161301|ref|YP_004174525.1| transcription antitermination protein NusG [Anaerolinea thermophila UNI-1] gi|319995154|dbj|BAJ63925.1| transcription antitermination protein NusG [Anaerolinea thermophila UNI-1] Length = 226 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 66/171 (38%), Positives = 105/171 (61%), Gaps = 3/171 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K ++ R+ G+ + ++ IP++ + V+ G++ ER FPGY Sbjct: 58 WYVVHCYSGYENKVRHNLEQRIETMGMKDKIFDVVIPTQEEIEVKDGKRRTVERHVFPGY 117 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ +MT++ ++ +++TP V GF+G + P+P+ E+ I+ ++E + P V F+ Sbjct: 118 VLVNMIMTEESWYVVRNTPGVTGFVG-MDQPTPLRPEEVAQILKRME--AEAPRVKVTFK 174 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VGERV + DGPF F G V +D E+++V V V FGR TPVEL + QVEK Sbjct: 175 VGERVRIVDGPFNDFRGTVSEIDMERNKVRVMVNFFGRETPVELDFLQVEK 225 >gi|296137526|ref|YP_003644768.1| NusG antitermination factor [Thiomonas intermedia K12] gi|295797648|gb|ADG32438.1| NusG antitermination factor [Thiomonas intermedia K12] Length = 187 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFP Sbjct: 13 KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 72 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K T KV GF+G P P++++++ IM+Q++ +P V Sbjct: 73 GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 132 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++ Sbjct: 133 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 187 >gi|297183429|gb|ADI19562.1| transcription antiterminator [uncultured gamma proteobacterium HF0770_27E13] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++QVYSN EKK + + R + GL +I +P+E +V ++ G+K SER++ Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLEDRSKQLGLSEQFADIVVPTEEIVEMKGGQKKTSERKY 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+ + D+ +H + P V+GF+G E P+P++D E+ I+N+ E A P Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFIGGTSEKPAPISDREVMIILNKAEDAANAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ GE V V +GPF FNG+V+ V+ EKS++ V V I GR TPVEL +NQVEK Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKSKLFVAVQILGRATPVELNFNQVEK 176 >gi|91790280|ref|YP_551232.1| transcription antitermination protein nusG [Polaromonas sp. JS666] gi|91699505|gb|ABE46334.1| transcription antitermination protein nusG [Polaromonas sp. JS666] Length = 199 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS EK +I R++R+G+ +P+E VV ++ G+K +ERRFFP Sbjct: 25 MQWYVVHAYSGMEKAVERNILERINRAGMQAKFGRFLVPTEEVVEIKNGQKKTTERRFFP 84 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D+ +H +K T KV GF+G P+P+++ +++ I++Q++ ++P V Sbjct: 85 GYVLVEMVMDDETWHLVKHTNKVTGFVGGAKNRPAPISEEDVQKIVSQMQVGTEKPRHKV 144 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF FNG V+ V+ +K++V V V IFGR TPVEL ++Q+EK Sbjct: 145 EFETGEYVRVKDGPFTDFNGTVEEVNYDKNKVRVSVTIFGRATPVELEFSQIEK 198 >gi|262197203|ref|YP_003268412.1| NusG antitermination factor [Haliangium ochraceum DSM 14365] gi|262080550|gb|ACY16519.1| NusG antitermination factor [Haliangium ochraceum DSM 14365] Length = 189 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 74/172 (43%), Positives = 106/172 (61%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V ++ E++ E++ R G + EI +P+ V+ V KG++ S ++FFPG Sbjct: 18 KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ ++ TD VYH I++TPKV GF+G G P PV +SEI I N + +P V F Sbjct: 78 YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V+DGPFASF V+ V +K ++ V V IFGR TPVEL + QVEK Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188 >gi|329118708|ref|ZP_08247408.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465143|gb|EGF11428.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++Q YS EK +++ R+ R ++ EI +P E VV ++ GR+ SER+F Sbjct: 1 MAKQWYVIQAYSGFEKNVQKTLKERIIRENMEQYFGEILVPVEEVVDIKNGRRTVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M+D +H +K TP+V GF+G P P++ E+E IM QV+ ++P Sbjct: 61 FPGYVLVEMEMSDDSWHLVKSTPRVSGFVGGVANRPLPISQKEVETIMAQVQVDGEKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+G+RV V++GPFA FNGIV+ V+ E++++ V V IFGR TPVEL + QVEK Sbjct: 121 RVSFEIGQRVRVNEGPFADFNGIVEEVNYERNKLRVSVQIFGRETPVELEFGQVEK 176 >gi|84685454|ref|ZP_01013352.1| transcription termination/antitermination factor NusG [Maritimibacter alkaliphilus HTCC2654] gi|84666611|gb|EAQ13083.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium HTCC2654] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTSVAEAGLEDEIDEVLVPTEEVIEVRRGKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+E I+ +VE V+ P + Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVEAILGRVEEGVEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K Sbjct: 121 ITFEIGEKVAVTDGPFEGFDGMVEGVDEDNQRLKVSVSIFGRATPVELEYTQVSK 175 >gi|15607779|ref|NP_215153.1| transcription antitermination protein NusG [Mycobacterium tuberculosis H37Rv] gi|15840042|ref|NP_335079.1| transcription antitermination protein NusG [Mycobacterium tuberculosis CDC1551] gi|31791823|ref|NP_854316.1| transcription antitermination protein NusG [Mycobacterium bovis AF2122/97] gi|121636560|ref|YP_976783.1| transcription antitermination protein NusG [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660413|ref|YP_001281936.1| transcription antitermination protein NusG [Mycobacterium tuberculosis H37Ra] gi|148821843|ref|YP_001286597.1| transcription antitermination protein NusG [Mycobacterium tuberculosis F11] gi|167969069|ref|ZP_02551346.1| transcription antitermination protein NusG [Mycobacterium tuberculosis H37Ra] gi|215402414|ref|ZP_03414595.1| transcription antitermination protein NusG [Mycobacterium tuberculosis 02_1987] gi|215410186|ref|ZP_03418994.1| transcription antitermination protein NusG [Mycobacterium tuberculosis 94_M4241A] gi|215429474|ref|ZP_03427393.1| transcription antitermination protein NusG [Mycobacterium tuberculosis EAS054] gi|215444758|ref|ZP_03431510.1| transcription antitermination protein NusG [Mycobacterium tuberculosis T85] gi|218752287|ref|ZP_03531083.1| transcription antitermination protein NusG [Mycobacterium tuberculosis GM 1503] gi|219556483|ref|ZP_03535559.1| transcription antitermination protein NusG [Mycobacterium tuberculosis T17] gi|224989032|ref|YP_002643719.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797579|ref|YP_003030580.1| transcription antitermination protein nusG [Mycobacterium tuberculosis KZN 1435] gi|254230970|ref|ZP_04924297.1| transcription antitermination protein nusG [Mycobacterium tuberculosis C] gi|254363593|ref|ZP_04979639.1| transcription antitermination protein nusG [Mycobacterium tuberculosis str. Haarlem] gi|254549599|ref|ZP_05140046.1| transcription antitermination protein NusG [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185520|ref|ZP_05762994.1| transcription antitermination protein NusG [Mycobacterium tuberculosis CPHL_A] gi|260199646|ref|ZP_05767137.1| transcription antitermination protein NusG [Mycobacterium tuberculosis T46] gi|260203809|ref|ZP_05771300.1| transcription antitermination protein NusG [Mycobacterium tuberculosis K85] gi|289442033|ref|ZP_06431777.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T46] gi|289446196|ref|ZP_06435940.1| transcription antitermination protein nusG [Mycobacterium tuberculosis CPHL_A] gi|289552893|ref|ZP_06442103.1| transcription antitermination protein nusG [Mycobacterium tuberculosis KZN 605] gi|289568578|ref|ZP_06448805.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T17] gi|289573243|ref|ZP_06453470.1| transcription antitermination protein nusG [Mycobacterium tuberculosis K85] gi|289744357|ref|ZP_06503735.1| transcription antitermination protein nusG [Mycobacterium tuberculosis 02_1987] gi|289752683|ref|ZP_06512061.1| transcription antitermination protein NusG [Mycobacterium tuberculosis EAS054] gi|289756723|ref|ZP_06516101.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T85] gi|289760764|ref|ZP_06520142.1| transcription antitermination protein nusG [Mycobacterium tuberculosis GM 1503] gi|294996157|ref|ZP_06801848.1| transcription antitermination protein NusG [Mycobacterium tuberculosis 210] gi|297633137|ref|ZP_06950917.1| transcription antitermination protein NusG [Mycobacterium tuberculosis KZN 4207] gi|297730117|ref|ZP_06959235.1| transcription antitermination protein NusG [Mycobacterium tuberculosis KZN R506] gi|298524131|ref|ZP_07011540.1| transcription antitermination protein nusG [Mycobacterium tuberculosis 94_M4241A] gi|306774749|ref|ZP_07413086.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu001] gi|306781520|ref|ZP_07419857.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu002] gi|306783287|ref|ZP_07421609.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu003] gi|306787656|ref|ZP_07425978.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu004] gi|306794423|ref|ZP_07432725.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu005] gi|306796392|ref|ZP_07434694.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu006] gi|306966660|ref|ZP_07479321.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu009] gi|306970853|ref|ZP_07483514.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu010] gi|307078578|ref|ZP_07487748.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu011] gi|307083142|ref|ZP_07492255.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu012] gi|313657444|ref|ZP_07814324.1| transcription antitermination protein NusG [Mycobacterium tuberculosis KZN V2475] gi|54037928|sp|P65590|NUSG_MYCBO RecName: Full=Transcription antitermination protein nusG gi|54041678|sp|P65589|NUSG_MYCTU RecName: Full=Transcription antitermination protein nusG gi|1877377|emb|CAB07098.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium tuberculosis H37Rv] gi|13880188|gb|AAK44893.1| transcription antitermination protein NusG [Mycobacterium tuberculosis CDC1551] gi|31617410|emb|CAD93520.1| PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycobacterium bovis AF2122/97] gi|121492207|emb|CAL70674.1| Probable transcription antitermination protein nusG [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600029|gb|EAY59039.1| transcription antitermination protein nusG [Mycobacterium tuberculosis C] gi|134149107|gb|EBA41152.1| transcription antitermination protein nusG [Mycobacterium tuberculosis str. Haarlem] gi|148504565|gb|ABQ72374.1| transcription antitermination protein NusG [Mycobacterium tuberculosis H37Ra] gi|148720370|gb|ABR04995.1| transcription antitermination protein nusG [Mycobacterium tuberculosis F11] gi|224772145|dbj|BAH24951.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319082|gb|ACT23685.1| transcription antitermination protein nusG [Mycobacterium tuberculosis KZN 1435] gi|289414952|gb|EFD12192.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T46] gi|289419154|gb|EFD16355.1| transcription antitermination protein nusG [Mycobacterium tuberculosis CPHL_A] gi|289437525|gb|EFD20018.1| transcription antitermination protein nusG [Mycobacterium tuberculosis KZN 605] gi|289537674|gb|EFD42252.1| transcription antitermination protein nusG [Mycobacterium tuberculosis K85] gi|289542332|gb|EFD45980.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T17] gi|289684885|gb|EFD52373.1| transcription antitermination protein nusG [Mycobacterium tuberculosis 02_1987] gi|289693270|gb|EFD60699.1| transcription antitermination protein NusG [Mycobacterium tuberculosis EAS054] gi|289708270|gb|EFD72286.1| transcription antitermination protein nusG [Mycobacterium tuberculosis GM 1503] gi|289712287|gb|EFD76299.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T85] gi|298493925|gb|EFI29219.1| transcription antitermination protein nusG [Mycobacterium tuberculosis 94_M4241A] gi|308216642|gb|EFO76041.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu001] gi|308325691|gb|EFP14542.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu002] gi|308331948|gb|EFP20799.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu003] gi|308335733|gb|EFP24584.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu004] gi|308337311|gb|EFP26162.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu005] gi|308343169|gb|EFP32020.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu006] gi|308355683|gb|EFP44534.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu009] gi|308359638|gb|EFP48489.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu010] gi|308363494|gb|EFP52345.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu011] gi|308367148|gb|EFP55999.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu012] gi|323720996|gb|EGB30061.1| transcription antitermination protein nusG [Mycobacterium tuberculosis CDC1551A] gi|326905138|gb|EGE52071.1| transcription antitermination protein nusG [Mycobacterium tuberculosis W-148] gi|328457360|gb|AEB02783.1| transcription antitermination protein nusG [Mycobacterium tuberculosis KZN 4207] Length = 238 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS + ++ + Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228 Query: 167 ELAYNQVEKI 176 EL + QV KI Sbjct: 229 ELTFGQVSKI 238 >gi|168830297|gb|ACA34394.1| NusG [uncultured bacterium pTW2] Length = 200 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 118/183 (64%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R+G++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 17 KRWYVVHAYSGFEKSVAQALRDRIVRTGMEDRFGDVMVPTEEVIEMRAGQKRRSERKFFP 76 Query: 63 GYVLIKA---------VMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + + +H IK+TPKV+GF+G + P P+ D E I+++V+ Sbjct: 77 GYVLVQIVTHDEGGIPRIDSESWHLIKETPKVMGFIGGTADKPLPIRDDEAAAILDRVQE 136 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V DGPF FNG+V+ V+ +KSR+ V V+IFGR TPVEL + Q Sbjct: 137 GVEKPRPKVLFEAGQMVRVVDGPFNDFNGVVEEVNYDKSRLRVAVLIFGRSTPVELEFGQ 196 Query: 173 VEK 175 VEK Sbjct: 197 VEK 199 >gi|294341871|emb|CAZ90300.1| Transcription antitermination protein nusG [Thiomonas sp. 3As] Length = 189 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS EK ++ R+ R+G+ I +P+E VV ++ G K +ERRFFP Sbjct: 15 KQWYVVHAYSGMEKAVQRNLAERIERAGMQTKFGRILVPTEEVVEIKNGHKSITERRFFP 74 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K T KV GF+G P P++++++ IM+Q++ +P V Sbjct: 75 GYVLVEMEMDDATWHLVKHTSKVTGFVGGAKNRPVPISEADVNKIMSQMQEGADKPRPKV 134 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V + +GPF FNG V+ V+ EKSR+ V V IFGR TPVEL + Q+E++ Sbjct: 135 QFEVGEMVRIKEGPFTDFNGNVEEVNYEKSRLRVSVTIFGRATPVELEFQQIERL 189 >gi|317485864|ref|ZP_07944726.1| transcription termination/antitermination factor NusG [Bilophila wadsworthia 3_1_6] gi|316922879|gb|EFV44103.1| transcription termination/antitermination factor NusG [Bilophila wadsworthia 3_1_6] Length = 229 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWYIV YS E++ +I + + + L+ E+ +P+E+V+ + + G K + R+F+P Sbjct: 56 RWYIVHTYSGFEQRVEATIKEMMRNAQDNGLIHEVVVPTEKVIELGKGGAKRTTTRKFYP 115 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY++++ MTD +H ++ PKV GF+G P+P+ D E I++ +E ++P Sbjct: 116 GYIMLRMTMTDFSWHLVQSIPKVTGFVGGKNRPAPMKDEEAARILSLMETRQEQPRPKFS 175 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 176 FERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 228 >gi|299541913|ref|ZP_07052236.1| transcription antitermination protein NusG [Lysinibacillus fusiformis ZC1] gi|298725651|gb|EFI66292.1| transcription antitermination protein NusG [Lysinibacillus fusiformis ZC1] Length = 177 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E + ++ R+ G+ + + +P ++ G+K R+ Sbjct: 1 MEKNWYVVHTYSGYENRVKANLEKRVETMGMQDKIFRVIVPEHEETEMKDGKKRTMMRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD ++ +++TP V GF+ G G P+P+ E + ++ Q+ + Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQMGMTDKVV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V VGE V V +GPFA F G V+ +D EK ++ V V +FGR T +EL + QV+K+ Sbjct: 121 --EVDITVGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVTVDMFGRETIMELDFEQVQKL 177 >gi|160871908|ref|ZP_02062040.1| transcription termination/antitermination factor NusG [Rickettsiella grylli] gi|159120707|gb|EDP46045.1| transcription termination/antitermination factor NusG [Rickettsiella grylli] Length = 215 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 73/175 (41%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+VQV S E+K ++++ R+ ++ L +I +P+E V+ +R+GRK + R+F+ Sbjct: 40 SKQWYVVQVRSGYERKVLDALNERIKQNDLTEKFGQIIVPTEEVIEIRQGRKRKTARKFY 99 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ M + ++ ++ TP VI F+G + P P+ + E+ I+ +++ V +P Sbjct: 100 PGYVLVEMDMGEDSWYLVQKTPGVIKFIGGTSDKPVPLGEREVSKILQRMQEGVDKPRPK 159 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FEVGE V V DGPFA FNG V+ V+ EK+R+ V V+IFGR TPVEL + QV+K Sbjct: 160 VLFEVGEVVRVVDGPFADFNGEVEEVNYEKNRLRVSVIIFGRSTPVELEFGQVKK 214 >gi|206602630|gb|EDZ39111.1| Transcription antitermination protein (NusG) [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 103/174 (59%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FP Sbjct: 11 KKWYVIHTYAGFENRVKTSIEERVILKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ T++ I TPKV GFLG G P P+++ E+ + +++E+ P S Sbjct: 71 GYVLVEMEPTEEAIQFILSTPKVTGFLGNGTTPIPMSNREVSELFDRIESGTAMPSPSQH 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++ Sbjct: 131 FSEAETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184 >gi|304321357|ref|YP_003855000.1| transcription antitermination protein NusG [Parvularcula bermudensis HTCC2503] gi|303300259|gb|ADM09858.1| transcription antitermination protein NusG [Parvularcula bermudensis HTCC2503] Length = 178 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 88/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYIV YSN EKK E+I GL HL E+ +P+E VV +R+GRK+N+ERR+ Sbjct: 1 MDAKWYIVNAYSNFEKKVAEAIKQSAEEKGLSHLFEEVLVPTEEVVEIRRGRKINTERRY 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119 FPGYVL+K VM D+ +H + T KV GFLG+G+ P PV+ E++ I+ ++ Q P Sbjct: 61 FPGYVLVKMVMNDQSFHVVNSTSKVTGFLGSGKKPIPVSQKEVDRILGTMDEQEQVPAKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ +++GE V V DGPFASF+G+V+++DEE +R+ V V IFGR TPVEL Y+QV+K Sbjct: 121 AILYDIGETVKVVDGPFASFSGVVEDIDEENARLKVSVSIFGRATPVELEYSQVDK 176 >gi|239813602|ref|YP_002942512.1| NusG antitermination factor [Variovorax paradoxus S110] gi|239800179|gb|ACS17246.1| NusG antitermination factor [Variovorax paradoxus S110] Length = 203 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 116/173 (67%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG Sbjct: 30 RWYVVHAYSGMEKAVERNIIERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ +M D+ +H +K T KV GF+G P+P++ E+E I++Q++ ++P V Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEGIVSQMQQGTEKPRHKVE 149 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EKS+V V V+IFGR TPVEL ++QVEK Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEEVNYEKSKVSVSVMIFGRATPVELEFSQVEK 202 >gi|257054435|ref|YP_003132267.1| transcription antitermination protein nusG [Saccharomonospora viridis DSM 43017] gi|256584307|gb|ACU95440.1| transcription antitermination protein nusG [Saccharomonospora viridis DSM 43017] Length = 267 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 15/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E + +I R ++ + ++ +P+E V ++ G++ +R+ PGY Sbjct: 81 WYVVHSYAGYENRVKSNIETRRQTLDVEDYIFQVEVPTEEVTEIKNGQRKIVQRKVLPGY 140 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------Q 109 +L++ M D + +++TP V GF+G PSP++ E+ + Sbjct: 141 ILVRMEMNDASWSAVRNTPGVTGFVGATSRPSPLSLDEVVKFLAPKVEKAAPAKAKGEPA 200 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 E V V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+ Sbjct: 201 AEEQVAAGPVEVDFEVGESVTVMDGPFATLPATISEVNVDAQKLKVLVSIFGRETPVELS 260 Query: 170 YNQVEKI 176 +NQV KI Sbjct: 261 FNQVSKI 267 >gi|119947054|ref|YP_944734.1| NusG antitermination factor [Psychromonas ingrahamii 37] gi|119865658|gb|ABM05135.1| transcription antitermination protein nusG [Psychromonas ingrahamii 37] Length = 183 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +++ + + ++ +I +P+E VV +R G+K SER+FFP Sbjct: 8 KRWYVVQAFSGYEGRVQKTLLEYIKLNEMEDYFGQILVPTEEVVEMRAGQKRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K +V+GF+G E P+P++ E+++I+N+++ + P Sbjct: 68 GYVLVEMAMNDDSWHLVKSIDRVMGFIGGSKERPAPISQKEVDNILNRLQESHDSPRPRT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V++GPF F G V+ VD EKSR+ V V IFGR TPV+L ++QVEK Sbjct: 128 LFEAGQIVRVTEGPFVDFTGTVEKVDYEKSRLKVSVSIFGRATPVDLDFSQVEK 181 >gi|77165799|ref|YP_344324.1| transcription antitermination protein NusG [Nitrosococcus oceani ATCC 19707] gi|254433234|ref|ZP_05046742.1| transcription termination/antitermination factor NusG [Nitrosococcus oceani AFC27] gi|76884113|gb|ABA58794.1| transcription antitermination protein nusG [Nitrosococcus oceani ATCC 19707] gi|207089567|gb|EDZ66838.1| transcription termination/antitermination factor NusG [Nitrosococcus oceani AFC27] Length = 177 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 119/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ +S E++ SI R+ R GL +I +P+E VV +R+G+K SER+F Sbjct: 1 MAKRWYVVQAFSGFEQQVKRSIEERVRRYGLQESFGDILVPTEEVVEMREGQKRKSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ M D+ +H +KD P+V+GF+G + P+ +T++E E I+ ++ ++P Sbjct: 61 FPGYVLVQMEMGDETWHLVKDVPRVLGFIGGTSDKPAAITEAEAEEILERIREGAEQPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE V V +GPF FNG+V+ V+ EK+++ V V+IFGR TPVEL + QVEK Sbjct: 121 KVLFEPGEMVRVIEGPFTDFNGVVEEVNYEKNKLRVAVLIFGRSTPVELDFGQVEK 176 >gi|254477580|ref|ZP_05090966.1| transcription termination/antitermination factor NusG [Ruegeria sp. R11] gi|214031823|gb|EEB72658.1| transcription termination/antitermination factor NusG [Ruegeria sp. R11] Length = 177 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ GL+ + E+ +P+E V+ +R+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEHGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ + P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVQEGEEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTK 175 >gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium 104] gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium subsp. avium ATCC 25291] gi|41399043|gb|AAS06661.1| NusG [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167394|gb|ABK68291.1| transcription termination/antitermination factor NusG [Mycobacterium avium 104] Length = 256 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 67 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 126 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS ++ ++ + Sbjct: 127 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGATKKVAKGAASTA 186 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 187 AAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 246 Query: 167 ELAYNQVEKI 176 EL ++QV K+ Sbjct: 247 ELTFSQVSKL 256 >gi|84515191|ref|ZP_01002554.1| transcription termination/antitermination factor NusG [Loktanella vestfoldensis SKA53] gi|84511350|gb|EAQ07804.1| transcription termination/antitermination factor NusG [Loktanella vestfoldensis SKA53] Length = 176 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E+I + GL + E+ +P+E V+ VR+ +KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEAIRAKAEEKGLSDQIDEVLVPTEEVIEVRRNKKVTTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +V+ P + Sbjct: 61 MPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDSPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEIGEKVKVNDGPFEDFDGMVEYVDEEHQRLKVTVSIFGRATPVELEFTQVSK 175 >gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter asiaticus str. psy62] gi|38195603|gb|AAR13466.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|254039825|gb|ACT56621.1| transcription antitermination protein NusG [Candidatus Liberibacter asiaticus str. psy62] gi|255957547|dbj|BAH96610.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957843|dbj|BAH96817.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957853|dbj|BAH96826.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957863|dbj|BAH96835.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957873|dbj|BAH96844.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957883|dbj|BAH96853.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957893|dbj|BAH96862.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957903|dbj|BAH96871.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957913|dbj|BAH96880.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957923|dbj|BAH96889.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957933|dbj|BAH96898.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957943|dbj|BAH96907.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957953|dbj|BAH96916.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957963|dbj|BAH96925.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957973|dbj|BAH96934.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957983|dbj|BAH96943.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255957993|dbj|BAH96952.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958003|dbj|BAH96961.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958013|dbj|BAH96970.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958023|dbj|BAH96979.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958033|dbj|BAH96988.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958043|dbj|BAH96997.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958053|dbj|BAH97006.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958063|dbj|BAH97015.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958073|dbj|BAH97024.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958083|dbj|BAH97033.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958093|dbj|BAH97042.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958103|dbj|BAH97051.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958113|dbj|BAH97060.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|255958123|dbj|BAH97069.1| transcription antitermination component [Candidatus Liberibacter asiaticus] gi|283362133|dbj|BAI65920.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362143|dbj|BAI65929.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362153|dbj|BAI65938.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362163|dbj|BAI65947.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362173|dbj|BAI65956.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362183|dbj|BAI65965.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362193|dbj|BAI65974.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362203|dbj|BAI65983.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362213|dbj|BAI65992.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362223|dbj|BAI66001.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|283362233|dbj|BAI66010.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] Length = 177 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF Sbjct: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS Sbjct: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV Sbjct: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 >gi|313635074|gb|EFS01424.1| transcription termination/antitermination factor NusG [Listeria seeligeri FSL N1-067] Length = 177 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEIKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177 >gi|299137913|ref|ZP_07031093.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8] gi|298599843|gb|EFI56001.1| NusG antitermination factor [Acidobacterium sp. MP5ACTX8] Length = 217 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 66/172 (38%), Positives = 114/172 (66%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+ YS E+K ES+ R++ L+ V I IP+E +R G+K +R F PG Sbjct: 43 KWYIIHAYSGFERKVKESLQSRVAAYHLEDRVGRIEIPTEPTTELRNGKKYTIDRVFLPG 102 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV ++ + + ++H +K+TP+V GFL TG+ P+ ++++E+ ++N+ +A ++P + F Sbjct: 103 YVFVEMALDNDLWHVVKNTPRVTGFLQTGDQPNALSEAEVNAMLNRSDATKEKPKLKMKF 162 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GE+V +++GPFA+FNG V +++E+K + V V IFGR TP E++++ VEK Sbjct: 163 SKGEQVRITEGPFANFNGAVDDINEDKQTLKVMVSIFGRPTPTEVSFSNVEK 214 >gi|145588230|ref|YP_001154827.1| NusG antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046636|gb|ABP33263.1| transcription antitermination protein nusG [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 190 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ YS EK + + R++RSG+ I +PSE VV ++ G K +ERRFFP Sbjct: 16 MRWYVIHAYSGMEKSVKKGLEERIARSGMPEKFGRILVPSEEVVEIKSGAKSVTERRFFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ MTD+ +H +K+TPKV GF+G PSP++ +E+ IM+Q++A V +P Sbjct: 76 GYVLIEMEMTDESWHLVKNTPKVTGFVGGVRNRPSPISTAEVAKIMDQMQAGVDKPKPKT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V +GPF FNG ++ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 136 LFEVGEIVRVKEGPFVDFNGNIEEVNYEKSRLRVSVTIFGRGTPVELEFGQVEKM 190 >gi|319791330|ref|YP_004152970.1| nusg antitermination factor [Variovorax paradoxus EPS] gi|315593793|gb|ADU34859.1| NusG antitermination factor [Variovorax paradoxus EPS] Length = 203 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 117/173 (67%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK +I R++R+G+ I +P+E VV ++ G+K +ERRFFPG Sbjct: 30 RWYVVHAYSGMEKAVERNITERINRAGMQDKFGRILVPTEEVVEIKNGQKRTTERRFFPG 89 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ +M D+ +H +K T KV GF+G P+P++ E+E I++Q++ ++P V Sbjct: 90 YVLVEMIMDDESWHLVKHTNKVTGFVGGAKNRPAPISQKEVEDIVSQMQQGTEKPRHKVE 149 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V++V+ EKS+V V V+IFGR TPVEL ++QVEK Sbjct: 150 FTVGEFVRVKEGPFTDFNGTVEDVNYEKSKVSVSVMIFGRSTPVELEFSQVEK 202 >gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Segniliparus rotundus DSM 44985] gi|296182254|gb|ADG99160.1| NusG antitermination factor [Segniliparus rotundus DSM 44985] Length = 258 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 16/189 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ R+ + + +I +P+E V V+ G++ R+ PG Sbjct: 70 KWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVKNGQRKLVNRKILPG 129 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----- 118 Y+L++ + D+ + T+++TP V GF+GT + ++ ++ + E Sbjct: 130 YILVRMDLNDESWSTVRNTPGVTGFVGTSRPTPLALNDVVKFLLPRQEPKKAAAAAKTKQ 189 Query: 119 -----------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + V ++VGE V V+DGPFA+ + ++ E+ ++ V V IFGR TPVE Sbjct: 190 GDGFAAAIASVTEVDYQVGESVTVNDGPFANLAASISEINAEQQKLKVLVSIFGRETPVE 249 Query: 168 LAYNQVEKI 176 L++NQV KI Sbjct: 250 LSFNQVTKI 258 >gi|289424853|ref|ZP_06426635.1| transcription termination/antitermination factor NusG [Propionibacterium acnes SK187] gi|289427697|ref|ZP_06429409.1| transcription termination/antitermination factor NusG [Propionibacterium acnes J165] gi|295131414|ref|YP_003582077.1| transcription termination/antitermination factor NusG [Propionibacterium acnes SK137] gi|289154816|gb|EFD03499.1| transcription termination/antitermination factor NusG [Propionibacterium acnes SK187] gi|289159188|gb|EFD07380.1| transcription termination/antitermination factor NusG [Propionibacterium acnes J165] gi|291377288|gb|ADE01143.1| transcription termination/antitermination factor NusG [Propionibacterium acnes SK137] gi|313763077|gb|EFS34441.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL013PA1] gi|313773029|gb|EFS38995.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL074PA1] gi|313794084|gb|EFS42106.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL110PA1] gi|313802424|gb|EFS43649.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL110PA2] gi|313807843|gb|EFS46327.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL087PA2] gi|313812044|gb|EFS49758.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL083PA1] gi|313816875|gb|EFS54589.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL059PA1] gi|313819205|gb|EFS56919.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL046PA2] gi|313819756|gb|EFS57470.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL036PA1] gi|313823873|gb|EFS61587.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL036PA2] gi|313827234|gb|EFS64948.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL063PA1] gi|313828436|gb|EFS66150.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL063PA2] gi|313831107|gb|EFS68821.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL007PA1] gi|313833490|gb|EFS71204.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL056PA1] gi|313838124|gb|EFS75838.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL086PA1] gi|314914564|gb|EFS78395.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL005PA4] gi|314919192|gb|EFS83023.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL050PA1] gi|314920626|gb|EFS84457.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL050PA3] gi|314925735|gb|EFS89566.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL036PA3] gi|314931464|gb|EFS95295.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL067PA1] gi|314957024|gb|EFT01130.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL027PA1] gi|314957838|gb|EFT01941.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL002PA1] gi|314960679|gb|EFT04780.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL002PA2] gi|314963365|gb|EFT07465.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL082PA1] gi|314969740|gb|EFT13838.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL037PA1] gi|314974289|gb|EFT18385.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL053PA1] gi|314976940|gb|EFT21035.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL045PA1] gi|314979899|gb|EFT23993.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL072PA2] gi|314985803|gb|EFT29895.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL005PA1] gi|314988414|gb|EFT32505.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL005PA2] gi|314988838|gb|EFT32929.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL005PA3] gi|315077100|gb|EFT49175.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL053PA2] gi|315079791|gb|EFT51767.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL078PA1] gi|315084901|gb|EFT56877.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL027PA2] gi|315087231|gb|EFT59207.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL002PA3] gi|315088964|gb|EFT60940.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL072PA1] gi|315096811|gb|EFT68787.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL038PA1] gi|315100103|gb|EFT72079.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL059PA2] gi|315100572|gb|EFT72548.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL046PA1] gi|315109344|gb|EFT81320.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL030PA2] gi|327325647|gb|EGE67445.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL096PA2] gi|327328241|gb|EGE70008.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL096PA3] gi|327445317|gb|EGE91971.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL043PA1] gi|327446958|gb|EGE93612.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL043PA2] gi|327449046|gb|EGE95700.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL013PA2] gi|327451392|gb|EGE98046.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL092PA1] gi|327452608|gb|EGE99262.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL087PA3] gi|327457651|gb|EGF04306.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL083PA2] gi|328751908|gb|EGF65524.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL087PA1] gi|328756946|gb|EGF70562.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL020PA1] gi|328759041|gb|EGF72657.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL025PA2] gi|328762258|gb|EGF75750.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL099PA1] Length = 303 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|308375217|ref|ZP_07443128.2| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu007] gi|308376463|ref|ZP_07438920.2| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu008] gi|308347108|gb|EFP35959.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu007] gi|308351051|gb|EFP39902.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu008] Length = 241 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 52 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 111 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS + ++ + Sbjct: 112 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 171 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 172 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 231 Query: 167 ELAYNQVEKI 176 EL + QV KI Sbjct: 232 ELTFGQVSKI 241 >gi|302036653|ref|YP_003796975.1| transcription termination/antitermination protein NusG [Candidatus Nitrospira defluvii] gi|300604717|emb|CBK41049.1| Transcription termination/antitermination protein NusG [Candidatus Nitrospira defluvii] Length = 179 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 3/179 (1%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ WY++ Y+ E + S+ R S+ GL + ++ +P+E V+ ++ G++ S R+ Sbjct: 1 MSNKNWYVIHTYAGFEGRVKTSLLERASQMGLTERLGQVLVPTEDVIEIKDGKRRTSRRK 60 Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FFPGYVLI+ + D+ IK+TPKV GF+G G P+P++ E++ ++ QV+A P Sbjct: 61 FFPGYVLIELEAPLADETLQMIKETPKVTGFVGGGAQPTPLSSEEVDSLLKQVDAGAAGP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F G+ V + DGPF FNG V +VD + SRV V V IFGR TPVEL + QVE+I Sbjct: 121 REQVRFIKGDNVRIVDGPFLGFNGAVDDVDADHSRVKVFVSIFGRSTPVELGFLQVERI 179 >gi|282855233|ref|ZP_06264565.1| transcription termination/antitermination factor NusG [Propionibacterium acnes J139] gi|282581821|gb|EFB87206.1| transcription termination/antitermination factor NusG [Propionibacterium acnes J139] gi|314983092|gb|EFT27184.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL110PA3] gi|315090636|gb|EFT62612.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL110PA4] Length = 303 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVIKMLTPSVLARVSRENADKAP 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|327333165|gb|EGE74892.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL097PA1] Length = 303 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTP 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|50843343|ref|YP_056570.1| transcription antitermination protein NusG [Propionibacterium acnes KPA171202] gi|50840945|gb|AAT83612.1| transcription antitermination protein NusG [Propionibacterium acnes KPA171202] gi|315106013|gb|EFT77989.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL030PA1] Length = 303 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKTS 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pseudonocardia sp. P1] Length = 308 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R ++ + ++ +P+E V ++ G++ +R+ PGY Sbjct: 118 WYVVHSYAGYENKVKSNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKKVQRKVLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119 +L++ + D+ + +++TP V GF+G PSP+T +E+ + A ++ Sbjct: 178 ILVRMELNDQSWGAVRNTPGVTGFVGATSKPSPLTVNEVVKFLLPKTEAPKKEAEAGKPA 237 Query: 120 --------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TP Sbjct: 238 AAGAAATTGGSSTVEVDFEVGESVTVMDGPFATLPASISEVNIDAQKLKVLVSIFGRETP 297 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 298 VELGFNQVSKI 308 >gi|222152115|ref|YP_002561275.1| transcription antitermination factor [Macrococcus caseolyticus JCSC5402] gi|222121244|dbj|BAH18579.1| transcription antitermination factor [Macrococcus caseolyticus JCSC5402] Length = 181 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY V YS E K +++ RL + + + IP E +++ G+K S ++ FP Sbjct: 7 KHWYAVHTYSGYENKVKDNLEKRLESMNMQDQIFRVVIPEEEETTIKDGKKKTSLKKTFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E + I+ + + Sbjct: 67 GYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEAKFILKSMGMNEK--TI 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE+V V+ GPF + G VK +D EK ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 DVEIELGEQVRVTSGPFTNQVGEVKEIDAEKYKLTVLVDMFGRETPVEVEFDQIEKL 181 >gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Nakamurella multipartita DSM 44233] gi|258554480|gb|ACV77422.1| NusG antitermination factor [Nakamurella multipartita DSM 44233] Length = 306 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ ++ + +I +P+E V ++ G++ +R+ +PGY Sbjct: 124 WYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPGY 183 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQR------- 116 +L++ +TD+ + +++TP V GF+G T + PS +T E+ I+ Sbjct: 184 ILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTPG 243 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + V F +GE V V DGPFA+ + V+ + ++ V V IFGR TPVEL+++QV Sbjct: 244 SAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQV 303 Query: 174 EKI 176 KI Sbjct: 304 AKI 306 >gi|256831815|ref|YP_003160542.1| NusG antitermination factor [Jonesia denitrificans DSM 20603] gi|256685346|gb|ACV08239.1| NusG antitermination factor [Jonesia denitrificans DSM 20603] Length = 273 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 9/182 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ E + ++G R+ ++ + +I +P E V ++ +K R PG Sbjct: 92 QWYVIHSYAGYENRVKSNLGTRIQSLNMEDYIFQIEVPMEEVAEIKNAQKKIVRRVRIPG 151 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119 YVL++ +TD+ + T++ TP V GF+G P P+T E+ ++ + P Sbjct: 152 YVLVRMDLTDESWGTVRHTPGVTGFVGNTHQPVPLTRDEVFSMLAPTLQQGESPKKKSKA 211 Query: 120 -----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +V F VGE V V+DGPF + + ++ E ++ V V IFGR TPVEL +NQV Sbjct: 212 KPAAVTVDFTVGESVTVTDGPFETLPATISEINIEAQKLKVLVSIFGRETPVELGFNQVA 271 Query: 175 KI 176 KI Sbjct: 272 KI 273 >gi|314924045|gb|EFS87876.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL001PA1] gi|314965017|gb|EFT09116.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL082PA2] gi|315093850|gb|EFT65826.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL060PA1] gi|315104068|gb|EFT76044.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL050PA2] gi|327326459|gb|EGE68248.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL103PA1] Length = 303 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVLARVSRENADKAP 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|313812129|gb|EFS49843.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL025PA1] Length = 303 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 118 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 178 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARISRENADKTS 237 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ R+ V I GR TPV+L + Sbjct: 238 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLEF 297 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 298 NQIEKI 303 >gi|319760678|ref|YP_004124616.1| Transcription antitermination protein nusG [Candidatus Blochmannia vafer str. BVAF] gi|318039392|gb|ADV33942.1| Transcription antitermination protein nusG [Candidatus Blochmannia vafer str. BVAF] Length = 180 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + V S+ + + + +I +P+E VV +R G++ SER+FFP Sbjct: 6 KRWYVVQAFSGFENRVVHSLNEYIKLKNMGSMFGDIMVPTEEVVEMRAGQRRKSERKFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ PKV+GF+G + P+P+ D EI++I+ +++ +P Sbjct: 66 GYVLVQMVMNDASWHLVRSIPKVMGFVGGTCDKPAPIGDKEIDNIIYRLQQIGDKPRPKT 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L ++QVEK Sbjct: 126 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRATPVDLDFSQVEK 179 >gi|241765523|ref|ZP_04763485.1| NusG antitermination factor [Acidovorax delafieldii 2AN] gi|241364680|gb|EER59705.1| NusG antitermination factor [Acidovorax delafieldii 2AN] Length = 197 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++RSG+ I +P+E VV ++ G++ +ERR FPG Sbjct: 24 RWYIVHAYSGMEKAVERNILERIARSGMQTKFGRILVPTEEVVEMKNGQRKTTERRLFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P V Sbjct: 84 YVFVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEEEVQKIVSQMQEGTDKPRHKVE 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EKSRV V V+IFGR TPVEL + QVEK Sbjct: 144 FMVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 196 >gi|313835994|gb|EFS73708.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL037PA2] gi|314929670|gb|EFS93501.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL044PA1] gi|314970507|gb|EFT14605.1| transcription termination/antitermination factor NusG [Propionibacterium acnes HL037PA3] gi|328906260|gb|EGG26035.1| transcription antitermination protein NusG [Propionibacterium sp. P08] Length = 300 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ ++ + E +P+E VV +R G + R + PGY Sbjct: 115 WYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPGY 174 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------------NQVE 111 VL++ +TD + ++ TP V GF+G P P+T E+ ++ ++ Sbjct: 175 VLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVIAKASRENADKAP 234 Query: 112 AAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P V +EVGE V ++DGPFA + ++ RV V I GR TPV+L + Sbjct: 235 SPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRVKALVEILGRSTPVDLEF 294 Query: 171 NQVEKI 176 NQ+EKI Sbjct: 295 NQIEKI 300 >gi|260222522|emb|CBA32169.1| Transcription antitermination protein nusG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 188 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 79/173 (45%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS EK +I R+ R+G+ I +P E VV V+ G+K +ER+FFPG Sbjct: 15 RWYVVHAYSGMEKAVERNILERIQRAGMQSKFGRILVPMEEVVEVKNGQKKTTERKFFPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ VM D +H +K T KV GF+G P+P++++E+ I+NQ++ +P + Sbjct: 75 YVLVEMVMDDDTWHLVKHTNKVTGFVGGAKNRPAPISEAEVMKIVNQMQEGTDKPRHKIE 134 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V++V+ EKS+V V V IFGR TPVEL ++Q+EK Sbjct: 135 FVVGEFVRVKEGPFTDFNGSVEDVNYEKSKVRVSVTIFGRSTPVELEFSQIEK 187 >gi|206890987|ref|YP_002249161.1| transcription termination/antitermination factor NusG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742925|gb|ACI21982.1| transcription termination/antitermination factor NusG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 174 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V S E+K SI R+ GL+ ++ I IP+E+++ V+ +K E++F Sbjct: 1 MAKQWYVVHTMSGFEEKVKASIEERVKTKGLEDKISRILIPTEKIIEVKGKKKKEQEKKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY+L++ + D +H I T +V GF+G G+ P+P+ E+E I+ Q+ + P Sbjct: 61 YPGYILVEMELNDDTWHLISTTQRVTGFVG-GKKPAPIPQEEVEMILQQL-EKGRAPQIK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V ++DGPF +F G + VD E RV V V IFGR TPVELA++QVEK+ Sbjct: 119 AHFEKGETVRITDGPFTNFTGYIDEVDSEHERVKVMVSIFGRQTPVELAFSQVEKV 174 >gi|194364522|ref|YP_002027132.1| transcription antitermination protein NusG [Stenotrophomonas maltophilia R551-3] gi|194347326|gb|ACF50449.1| NusG antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 186 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 122/185 (65%), Gaps = 10/185 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R G++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+TP+V+GF+G + P P+ DSE E I+N+V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181 Query: 173 VEKIV 177 VEK V Sbjct: 182 VEKAV 186 >gi|84494813|ref|ZP_00993932.1| transcription antitermination protein NusG [Janibacter sp. HTCC2649] gi|84384306|gb|EAQ00186.1| transcription antitermination protein NusG [Janibacter sp. HTCC2649] Length = 316 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + EI +P E V ++ G++ R PGY Sbjct: 128 WYVIHSYAGYENRVKTNLETRIQSLNMEDFIFEIEVPMEEVTEIKGGQRKLVRRVRMPGY 187 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--------------- 109 V+++ +TD+ + ++ TP V GF+G P P++ E+ ++ Sbjct: 188 VIVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPLSLDEVYTMIKPAELELAAAAAAGGGS 247 Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 A V FEVGE V V DGPF + + ++ E ++ V V IFGR TPVE Sbjct: 248 TGSGAGSASQAPLVEFEVGESVTVMDGPFETLPATISEINAEGQKLKVLVSIFGRETPVE 307 Query: 168 LAYNQVEKI 176 L+++QV K+ Sbjct: 308 LSFSQVSKL 316 >gi|73748761|ref|YP_308000.1| transcription antitermination protein NusG [Dehalococcoides sp. CBDB1] gi|147669527|ref|YP_001214345.1| transcription antitermination protein nusG [Dehalococcoides sp. BAV1] gi|289432786|ref|YP_003462659.1| NusG antitermination factor [Dehalococcoides sp. GT] gi|73660477|emb|CAI83084.1| transcription antitermination protein NusG [Dehalococcoides sp. CBDB1] gi|146270475|gb|ABQ17467.1| transcription antitermination protein nusG [Dehalococcoides sp. BAV1] gi|288946506|gb|ADC74203.1| NusG antitermination factor [Dehalococcoides sp. GT] Length = 177 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ P Sbjct: 6 KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+E + P V Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+ Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177 >gi|320352905|ref|YP_004194244.1| transcription antitermination protein nusG [Desulfobulbus propionicus DSM 2032] gi|320121407|gb|ADW16953.1| transcription antitermination protein nusG [Desulfobulbus propionicus DSM 2032] Length = 187 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 11/186 (5%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYIV ++ E K ++ R+ +G + L EI +P+E+VV + KG + SER+F Sbjct: 1 MAKSWYIVHTHTGFENKVKSTLEERIKLAGQEDLFGEILVPTEQVVEMVKGARKTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-----------ENPSPVTDSEIEHIMNQ 109 FPGY+L+ M ++ +HT+++TP+V GF+G + +TD E + I+ + Sbjct: 61 FPGYILVNMEMNERSWHTVQETPRVTGFVGINMSQAGADKDIYKKIPSLTDKEADKILGR 120 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + +P V F G+ V V DGPFA+F G+++ V +K RV V V IFGR TPVEL Sbjct: 121 IADGANKPKPKVVFAEGDAVRVIDGPFANFQGVIEEVFPDKGRVRVMVSIFGRSTPVELE 180 Query: 170 YNQVEK 175 Y QV K Sbjct: 181 YIQVSK 186 >gi|240169413|ref|ZP_04748072.1| transcription antitermination protein NusG [Mycobacterium kansasii ATCC 12478] Length = 238 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 49 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS ++ ++ + Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGAAKKAAKGAASTA 168 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 169 AVAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228 Query: 167 ELAYNQVEKI 176 EL ++QV KI Sbjct: 229 ELTFSQVSKI 238 >gi|16799355|ref|NP_469623.1| transcription antitermination protein NusG [Listeria innocua Clip11262] gi|16412707|emb|CAC95511.1| transcription antitermination factor [Listeria innocua Clip11262] gi|313620919|gb|EFR92094.1| transcription termination/antitermination factor NusG [Listeria innocua FSL S4-378] gi|313625359|gb|EFR95151.1| transcription termination/antitermination factor NusG [Listeria innocua FSL J1-023] Length = 177 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+ Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177 >gi|315301178|ref|ZP_07872442.1| transcription termination/antitermination factor NusG [Listeria ivanovii FSL F6-596] gi|313630448|gb|EFR98317.1| transcription termination/antitermination factor NusG [Listeria ivanovii FSL F6-596] Length = 177 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI Sbjct: 120 -AEANFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 177 >gi|121609218|ref|YP_997025.1| NusG antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121553858|gb|ABM58007.1| transcription antitermination protein nusG [Verminephrobacter eiseniae EF01-2] Length = 212 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV Y EK +I R+ R+G+ I +P+E+VV ++ G++ +ERR FPG Sbjct: 39 RWYIVHAYLGMEKAVERNIQERIHRAGMQDKFGRILVPTEQVVEMKNGQRKTTERRLFPG 98 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+L++ VM D +H +K T KV GF+G P ++D+E++ I++ + +P + Sbjct: 99 YMLVEMVMDDDTWHLVKHTNKVKGFVGGSKNRPPSISDAEVQSIVSHMIEGADKPRHKME 158 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VGE+V V +GPF FNG+V+ V+ EKSRV V V+IFGR TPVEL + QVEK Sbjct: 159 LMVGEQVRVKEGPFTDFNGMVEEVNYEKSRVRVSVMIFGRSTPVELEFGQVEK 211 >gi|27904552|ref|NP_777678.1| transcription antitermination protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340244|sp|Q89B15|NUSG_BUCBP RecName: Full=Transcription antitermination protein nusG gi|27903949|gb|AAO26783.1| transcription antitermination protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 181 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++Q +S E + +SI + ++ L E+ +PSE V+ ++ G++ SE +FFP Sbjct: 7 KRWYVLQAFSGFEGRIAQSIREHVKLKKMEKLFGEVMVPSEEVIEIKAGQRKKSEYKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ +M + +H ++ P+V+GF+G + P P+TD E+ I+N+++ +P Sbjct: 67 GYVLIQMIMNESSWHLVRSIPRVLGFIGGTPDRPLPITDQEVNTIINKLKQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF+ FNGIV+ VD EK+R+ V V IFGR TPVEL ++QV+K Sbjct: 127 LFEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSIFGRSTPVELDFSQVKK 180 >gi|262201104|ref|YP_003272312.1| transcription termination/antitermination factor NusG [Gordonia bronchialis DSM 43247] gi|262084451|gb|ACY20419.1| transcription termination/antitermination factor NusG [Gordonia bronchialis DSM 43247] Length = 299 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY Sbjct: 109 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 168 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 +L++ + D + +++TP V GF+G PSP++ +E+ + Sbjct: 169 ILVRMDLNDDSWGAVRNTPGVTGFVGMNSKPSPLSLNEVLQFLMPRTEAKKPAAAKGAGA 228 Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + AA V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR TP Sbjct: 229 EGVEAAAAAATATIEVDFEVGESVTVMDGPFATLPASISEVNAEQRKVKVLVSIFGRETP 288 Query: 166 VELAYNQVEKI 176 VELA+NQVEKI Sbjct: 289 VELAFNQVEKI 299 >gi|125975201|ref|YP_001039111.1| transcription antitermination protein nusG [Clostridium thermocellum ATCC 27405] gi|256003137|ref|ZP_05428129.1| NusG antitermination factor [Clostridium thermocellum DSM 2360] gi|281419560|ref|ZP_06250571.1| NusG antitermination factor [Clostridium thermocellum JW20] gi|125715426|gb|ABN53918.1| transcription antitermination protein nusG [Clostridium thermocellum ATCC 27405] gi|255992828|gb|EEU02918.1| NusG antitermination factor [Clostridium thermocellum DSM 2360] gi|281406782|gb|EFB37049.1| NusG antitermination factor [Clostridium thermocellum JW20] gi|316939365|gb|ADU73399.1| NusG antitermination factor [Clostridium thermocellum DSM 1313] Length = 177 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K ++ + L + +I +P E + ++ G+K S ++ F Sbjct: 9 EAKWYVVHTYSGYENKVKANLEKIVENRNLQDYILDIVVPMEEQIEIKDGKKKASLKKVF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +M D+ ++ +++T V GF+G G P+TD EI + V+ + Sbjct: 69 PGYVLVKMIMNDESWYVVRNTRGVTGFVGPGSKAVPLTDEEIRAM------GVEEFAPVL 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVG+ V V GP +F GIV+ ++ EK +V V V +FGR TPVEL +Q++KI Sbjct: 123 DYEVGDNVRVVSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELHQIQKI 177 >gi|190572932|ref|YP_001970777.1| transcription antitermination protein NusG [Stenotrophomonas maltophilia K279a] gi|254525223|ref|ZP_05137278.1| transcription termination/antitermination factor NusG [Stenotrophomonas sp. SKA14] gi|190010854|emb|CAQ44463.1| putative transcription antitermination protein [Stenotrophomonas maltophilia K279a] gi|219722814|gb|EED41339.1| transcription termination/antitermination factor NusG [Stenotrophomonas sp. SKA14] Length = 186 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 122/185 (65%), Gaps = 10/185 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R G++ ++ +P+E VV +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDGMEERFGDVLVPTEEVVEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+TP+V+GF+G + P P+ DSE E I+N+V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETPRVMGFIGGTADRPLPIADSEAEAILNRVQE 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVSVLIFGRATPVELEFGQ 181 Query: 173 VEKIV 177 VEK V Sbjct: 182 VEKAV 186 >gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953899|gb|AEA27596.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 327 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ ++ + ++ +P+E V ++ G++ +R+ PGY Sbjct: 143 WYVVHSYAGYENKVKSNLETRVQTLDVEDFIYQVEVPTEEVTEIKNGQRKQVQRKVLPGY 202 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 +L++ + D+ + +++TP V GF+G PSP++ ++ + ++ + Sbjct: 203 ILVRMELNDQSWGAVRNTPGVTGFVGATSRPSPLSIDDVLKFLLPKTEPAKKDAAKPGAA 262 Query: 121 ---------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V FEVGE V V DGPFA+ + V+ + ++ V V IFGR TPVEL + Sbjct: 263 ATPGKAAVEVDFEVGESVTVMDGPFATLPATINEVNVDAQKLKVLVSIFGRETPVELGFG 322 Query: 172 QVEKI 176 QV KI Sbjct: 323 QVSKI 327 >gi|315446044|ref|YP_004078923.1| transcription antitermination protein nusG [Mycobacterium sp. Spyr1] gi|315264347|gb|ADU01089.1| transcription antitermination protein nusG [Mycobacterium sp. Spyr1] Length = 272 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262 Query: 167 ELAYNQVEKI 176 EL +NQV KI Sbjct: 263 ELTFNQVAKI 272 >gi|168823324|ref|ZP_02835324.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340452|gb|EDZ27216.1| transcription termination/antitermination factor NusG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 >gi|56961918|ref|YP_173640.1| transcription antitermination protein NusG [Bacillus clausii KSM-K16] gi|56908152|dbj|BAD62679.1| transcriptional antitermination factor [Bacillus clausii KSM-K16] Length = 178 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W++V YS E K ++ R+ + + + +P E ++ G+ R+ Sbjct: 1 MEKNWFVVHTYSGYENKVKANLEKRVESMEMTDHIFRVLVPVEEETEIKNGKTKQVSRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+G+ G P+P+ E+E I+ Q+ V Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLMPDEVERILKQMG--VVEA 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+ E V V GPFA F G ++ + EK ++ V V +FGR TPVEL + QVEKI Sbjct: 119 QEEVDFELKESVKVKSGPFADFVGTIEEIQVEKRKLKVHVNMFGRETPVELEFGQVEKI 177 >gi|294789162|ref|ZP_06754401.1| transcription termination/antitermination factor NusG [Simonsiella muelleri ATCC 29453] gi|294482903|gb|EFG30591.1| transcription termination/antitermination factor NusG [Simonsiella muelleri ATCC 29453] Length = 182 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 5/182 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY++Q YS EK +++ R++R +D +I +P E VV ++ GR++ SER+F Sbjct: 1 MAKRWYVLQAYSGFEKNVQKTLKERIAREEMDEYFGQILVPVEEVVDIKNGRRMVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQ---- 115 FPGYVLI+ MTD +H +K TP+V GF+G P P+T E++ +M QV + + Sbjct: 61 FPGYVLIEMEMTDSSWHLVKSTPRVNGFIGGTAHRPLPITQREVDAMMAQVGGSFEVGMK 120 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +P V FEVG++V V++GPFA F G+V++VD EK+++ V V IFGR TPVEL + QVEK Sbjct: 121 KPKPRVEFEVGQQVRVNEGPFADFTGLVEHVDYEKNKLRVTVQIFGRETPVELEFGQVEK 180 Query: 176 IV 177 +V Sbjct: 181 VV 182 >gi|260887710|ref|ZP_05898973.1| transcription termination/antitermination factor NusG [Selenomonas sputigena ATCC 35185] gi|330838618|ref|YP_004413198.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185] gi|260862590|gb|EEX77090.1| transcription termination/antitermination factor NusG [Selenomonas sputigena ATCC 35185] gi|329746382|gb|AEB99738.1| NusG antitermination factor [Selenomonas sputigena ATCC 35185] Length = 178 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 108/175 (61%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ R+ G++ + + +P E ++ G+K +++ F Sbjct: 4 EKKWYVIHTYSGYENKVKANLESRVHTMGMEDNIFNVIVPMEEEAEIKDGKKKLVKKKVF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY L++ ++ D+ ++ +++TP V GF+G+G P P++++E++HI+ + A ++PV + Sbjct: 64 PGYALVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSEAEVKHILKSMGAEEEKPVVHI 123 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V ++ G F +F V V EK +V V V +FGR TP E++YN+VEKI Sbjct: 124 DLEVGQAVRINSGTFENFAATVAEVLPEKGKVKVLVEMFGRETPAEVSYNEVEKI 178 >gi|103486929|ref|YP_616490.1| NusG antitermination factor [Sphingopyxis alaskensis RB2256] gi|98977006|gb|ABF53157.1| transcription antitermination protein nusG [Sphingopyxis alaskensis RB2256] Length = 178 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 85/178 (47%), Positives = 118/178 (66%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K +S+ R GL V + +P E V V++G+KV +ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVRDSVLAEAERMGLTDFVEAVEVPVETVTEVKRGKKVQAERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL K MTD VYH +K+TPKV GFLG+ P ++++E I+N E A RP + Sbjct: 60 FPGYVLAKLTMTDDVYHLVKNTPKVTGFLGSSGKPQAISEAEAARILNSKEEAAARPKTE 119 Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +E+G++V V +GPFASFNG+V+ +D +K+RV V V IFGR TPVEL + QVE++ Sbjct: 120 IRVDYEIGDQVKVLEGPFASFNGVVEELDFDKARVKVSVSIFGRATPVELDFEQVERM 177 >gi|238020173|ref|ZP_04600599.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147] gi|237868567|gb|EEP69571.1| hypothetical protein GCWU000324_00048 [Kingella oralis ATCC 51147] Length = 179 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 3/179 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK +++ R++R G+++ +I +P E VV ++ GRK SER+F Sbjct: 1 MSKQWYVVQAYSGFEKNVQKALKERIAREGVENYFGQILVPVEEVVDIKNGRKTVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAA--VQRP 117 FPGYVL++ MTD +H +K TP+V GF+G P P++ E+ IM Q ++P Sbjct: 61 FPGYVLVEMEMTDASWHLVKSTPRVNGFIGGTANRPLPISQREVNSIMEQFGGMQGEKKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG++V ++DGPFA F G V VD E+S++ V V +FGR TPVEL + QVEKI Sbjct: 121 KPKTEFEVGQQVRINDGPFADFTGDVNTVDYERSKLRVSVQVFGRETPVELDFGQVEKI 179 >gi|116871629|ref|YP_848410.1| transcription antitermination protein NusG [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740507|emb|CAK19627.1| transcription antitermination factor NusG [Listeria welshimeri serovar 6b str. SLCC5334] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E E I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEAERILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EK+ Sbjct: 120 -AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL 177 >gi|270308263|ref|YP_003330321.1| transcription antiterminator [Dehalococcoides sp. VS] gi|270154155|gb|ACZ61993.1| transcription antiterminator [Dehalococcoides sp. VS] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V YS E++ + + R+ + + + +P+E V V+ G++ ++ P Sbjct: 6 KNWYVVHTYSGHEERVRKGLDERIKSMDAEDDIERVVLPTEEEVEVKNGQRRTIRKKILP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+E + P V Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+ Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177 >gi|319787937|ref|YP_004147412.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317466449|gb|ADV28181.1| NusG antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ G++ ++ +P+E VV +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVMHGMEDRFGDVLVPTEEVVEMRSGQKRRSERKFFP 61 Query: 63 GYVLIKAVMTDKV---------YHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ TD +H +K+T KV+GF+G + P P+ D E I+++V+ Sbjct: 62 GYVLVQIETTDDNGIPRIDSESWHLVKETSKVMGFIGGTADRPLPIRDEEAAAILDRVQE 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVIDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|304405633|ref|ZP_07387292.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9] gi|304345672|gb|EFM11507.1| NusG antitermination factor [Paenibacillus curdlanolyticus YK9] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+ Sbjct: 1 MEKRWYVVHTYSGYENKVKANLERRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ V TD ++ +++TP V GF G+G P+P+ E++ I+ + ++ P Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHMG--IEEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+ E V V GPFA F G ++ + +K+++ V V +FGR TP+EL Y QVEKI Sbjct: 119 KPKIEFELKETVNVKVGPFAGFVGTIEEILLDKAKLKVHVNMFGRETPLELDYTQVEKI 177 >gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM 10152] gi|54018598|dbj|BAD59968.1| putative transcription antitermination regulator [Nocardia farcinica IFM 10152] Length = 273 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ L+ + ++ +P+E V ++ G++ N R+ PGY Sbjct: 84 WYVIHSYAGYENKVKANLETRVQNLDLEDYIFQVEVPTEEVTEIKNGQRKNVNRKVLPGY 143 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP++ ++ + + Sbjct: 144 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSIDDVVKFLVPASQQKKAPAAAAAAS 203 Query: 116 ---------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 +P V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 204 TETSTDVAPKPAIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 263 Query: 167 ELAYNQVEKI 176 ELA+ QV KI Sbjct: 264 ELAFTQVAKI 273 >gi|99080068|ref|YP_612222.1| transcription antitermination protein nusG [Ruegeria sp. TM1040] gi|259415894|ref|ZP_05739814.1| transcription termination/antitermination factor NusG [Silicibacter sp. TrichCH4B] gi|99036348|gb|ABF62960.1| transcription antitermination protein nusG [Ruegeria sp. TM1040] gi|259347333|gb|EEW59110.1| transcription termination/antitermination factor NusG [Silicibacter sp. TrichCH4B] Length = 177 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 117/177 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + GL+ + E+ +P+E V+ +R+G+KV++ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTAVVEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P + Sbjct: 61 MPGYVLVHMEMSDQGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGE+V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL + QV K V Sbjct: 121 ISFEVGEKVKVNDGPFEDFDGMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTKQV 177 >gi|124514455|gb|EAY55968.1| transcription antitermination protein (NusG) [Leptospirillum rubarum] Length = 184 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 101/174 (58%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ Y+ E + SI R+ L +V ++ +P + V +++G+K S R+ FP Sbjct: 11 KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ T++ I TPKV GFLG G P P++ E+ + +++E+ P S Sbjct: 71 GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQH 130 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F E V ++DGPF F+G++ VD + ++ V V IFGR TPVEL + QVE++ Sbjct: 131 FSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184 >gi|325675347|ref|ZP_08155031.1| transcription antitermination protein NusG [Rhodococcus equi ATCC 33707] gi|325553318|gb|EGD22996.1| transcription antitermination protein NusG [Rhodococcus equi ATCC 33707] Length = 265 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP+T +E+ + + + Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256 Query: 168 LAYNQVEKI 176 L++NQV+KI Sbjct: 257 LSFNQVQKI 265 >gi|221632693|ref|YP_002521914.1| transcription termination/antitermination factor NusG [Thermomicrobium roseum DSM 5159] gi|221156617|gb|ACM05744.1| transcription termination/antitermination factor NusG [Thermomicrobium roseum DSM 5159] Length = 198 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 2/171 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ R+ + V E+ IP + + +R G++ +R+ FPGY Sbjct: 28 WYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPGY 87 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL++ ++ D+ +H +++TP V GF+G G P P+ +E E I+ A ++P + Sbjct: 88 VLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIR--GAKAEQPKVRMTLL 145 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V + DGPF F G+V VD EK +V V V FGR TPV L + QVE+ Sbjct: 146 PGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >gi|169830421|ref|YP_001716403.1| NusG antitermination factor [Candidatus Desulforudis audaxviator MP104C] gi|169637265|gb|ACA58771.1| NusG antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 178 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +W++V YS E K ++ R+ ++ + I +P E + V+ G++ S+R+ Sbjct: 1 MSKQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYV+++ ++ D Y +++TP V GF+G+ G P P+TD+E I++Q+E P Sbjct: 61 FPGYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEG--DEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE+V V GPF +F G V +V+ EK+++ V + +FGR TP+EL Y Q+EK+ Sbjct: 119 RIRIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >gi|118616514|ref|YP_904846.1| transcription antitermination protein NusG [Mycobacterium ulcerans Agy99] gi|118568624|gb|ABL03375.1| transcription antitermination protein, NusG [Mycobacterium ulcerans Agy99] Length = 237 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS +T ++ + Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168 Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 ++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228 Query: 168 LAYNQVEKI 176 L +NQV KI Sbjct: 229 LTFNQVSKI 237 >gi|323490600|ref|ZP_08095805.1| transcription antitermination protein NusG [Planococcus donghaensis MPA1U2] gi|323395692|gb|EGA88533.1| transcription antitermination protein NusG [Planococcus donghaensis MPA1U2] Length = 177 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G++ L+ + IP E+ + G+K R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVETMGMEDLIFRVIIPEEQETDFKDGKKRTVMRKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD+ ++ +++TP V GF+ G G P+P+ D E+E I+ Q+ ++ Sbjct: 61 FPGYVLVELIMTDESWYVVRNTPGVTGFIGSSGGGAKPTPLLDEEVEFILKQMGMTERKV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F V + V V +GPFA+F G V+ +D+ K +V V + IFGR T +EL + QV+K+ Sbjct: 121 --DIDFAVADTVEVMEGPFANFQGKVEEIDDTKGKVKVSIDIFGRETKMELDFEQVQKV 177 >gi|74316411|ref|YP_314151.1| transcription antitermination protein nusG [Thiobacillus denitrificans ATCC 25259] gi|74055906|gb|AAZ96346.1| NusG antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 187 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 13/186 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV------------TEITIPSERVVSVRK 50 RWY+V YS EK ++ R+ R+G+ I +P E VV +R Sbjct: 1 MRWYVVHAYSGFEKSVARALEERIERAGMRDRFGVIVDEKTGKPRPAIMVPVEEVVEMRA 60 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQ 109 G+K +ER+FFPGYVL++ M D +H +K TPKV GF+G P+P+++ E++ I++Q Sbjct: 61 GQKKTAERKFFPGYVLVQMEMDDDTWHLVKSTPKVTGFVGGTATKPAPISEKEVQAILDQ 120 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + V++P V FEVGE+V V DGPF FNG V+ V+ +KS++ V V+IFGR TPVEL Sbjct: 121 MREGVEKPKPKVLFEVGEQVRVIDGPFTDFNGNVEEVNYDKSKLRVSVMIFGRATPVELG 180 Query: 170 YNQVEK 175 + QVEK Sbjct: 181 FGQVEK 186 >gi|296282315|ref|ZP_06860313.1| NusG antitermination factor [Citromicrobium bathyomarinum JL354] Length = 178 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 84/178 (47%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVRDAIISEAERLGLSEGVEEVEVPTETVTELKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119 PGYVL K MTD +YH +K+TPKV GFLG G P +++ E VE A P Sbjct: 60 MPGYVLAKLNMTDDIYHLVKNTPKVTGFLGAGNKPQAISEKEAARYFGGVEEAKAAPKQQ 119 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ +E+G++V V DGPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE + Sbjct: 120 VSIDYEIGDQVKVLDGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVELV 177 >gi|253577165|ref|ZP_04854485.1| transcription termination/antitermination factor NusG [Paenibacillus sp. oral taxon 786 str. D14] gi|251843409|gb|EES71437.1| transcription termination/antitermination factor NusG [Paenibacillus sp. oral taxon 786 str. D14] Length = 177 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K ++ R+ G++ + + +P E V + G+K R+ Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEVVNKDGKKKTVMRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ + TD ++ +++TP V GF G+G P+P+ E++ I+ + ++ P Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILAHMG--MEEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+ E V + GPFA+F G ++ + +KS+V V V +FGR TP+EL Y+QVEKI Sbjct: 119 KPVIEFELKENVRIKVGPFANFVGSIEEILTDKSKVKVHVNMFGRETPLELDYSQVEKI 177 >gi|21241725|ref|NP_641307.1| transcription antitermination protein NusG [Xanthomonas axonopodis pv. citri str. 306] gi|21107094|gb|AAM35843.1| transcription antitermination factor [Xanthomonas axonopodis pv. citri str. 306] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRSGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|294668063|ref|ZP_06733182.1| transcription antitermination protein NusG [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601870|gb|EFF45698.1| transcription antitermination protein NusG [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|322381140|ref|ZP_08055143.1| transcription antitermination-like protein NusG [Paenibacillus larvae subsp. larvae B-3650] gi|321154716|gb|EFX46987.1| transcription antitermination-like protein NusG [Paenibacillus larvae subsp. larvae B-3650] Length = 180 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K ++ R+ + + + +P E + + G+K R+ Sbjct: 4 MEKRWYVVHTYSGYENKVKANLEKRVESMDMTDKIFRVLVPMEEELVNKDGKKKTVMRKV 63 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ + TD ++ +++TP V GF G+G P+P+ E++ I+ + ++ P Sbjct: 64 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVDQILKHMG--IEEP 121 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F + E V V GPFA+F G V+ + EKS++ V V +FGR TP+EL ++QVEK+ Sbjct: 122 KPKIDFNLKETVRVKVGPFANFVGTVEEIIPEKSKLKVHVNMFGRETPLELDFDQVEKL 180 >gi|294675843|ref|YP_003576458.1| transcription antitermination protein NusG [Rhodobacter capsulatus SB 1003] gi|294474663|gb|ADE84051.1| transcription antitermination protein NusG [Rhodobacter capsulatus SB 1003] Length = 179 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + GL + E+ +P+E V+ +R+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAEQIKQAVIDKGLGDEIEEVLVPTEEVIEIRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPV 118 PGYVL++ MTD+ YH I +V GFLG P+P+ DSE+ I+N+ + P Sbjct: 61 MPGYVLVRMDMTDRGYHAITSINRVTGFLGPQGKPTPMRDSEVNTILNRQGPTGEVVAPR 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + FE+GE V V+DGPF F+G+V+ VD+ R+ V V IFGR TPVEL + QV K Sbjct: 121 NLIRFEIGENVSVTDGPFEGFSGMVEEVDDAAGRLKVTVSIFGRPTPVELEFTQVSK 177 >gi|145225693|ref|YP_001136371.1| transcription antitermination protein NusG [Mycobacterium gilvum PYR-GCK] gi|145218179|gb|ABP47583.1| transcription antitermination protein nusG [Mycobacterium gilvum PYR-GCK] Length = 272 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 83 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 142 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 143 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAAST 202 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 A +RPV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 203 AAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPV 262 Query: 167 ELAYNQVEKI 176 EL +NQV KI Sbjct: 263 ELTFNQVAKI 272 >gi|78046542|ref|YP_362717.1| transcription antitermination protein NusG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034972|emb|CAJ22617.1| transcription antitermination factor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEGGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|160895954|ref|YP_001561536.1| NusG antitermination factor [Delftia acidovorans SPH-1] gi|160361538|gb|ABX33151.1| NusG antitermination factor [Delftia acidovorans SPH-1] Length = 194 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++RS + I +P+E VV ++ G++ +ERR FPG Sbjct: 21 RWYIVHAYSGMEKAVERNIIERIARSDMQSKFGRILVPTEEVVEMKNGQRRTTERRLFPG 80 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E+ I++Q++ ++P V Sbjct: 81 YVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVSQMQEGTEKPRHKVE 140 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE V V +GPF FNG V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 141 FMPGELVRVKEGPFTDFNGSVEEVNYEKSRLRVSVMIFGRSTPVELEFAQVEK 193 >gi|183980992|ref|YP_001849283.1| transcription antitermination protein, NusG [Mycobacterium marinum M] gi|183174318|gb|ACC39428.1| transcription antitermination protein, NusG [Mycobacterium marinum M] Length = 237 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS +T ++ + Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAKAASTAA 168 Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 ++RPV V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE Sbjct: 169 VAEAGGLERPVLEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVE 228 Query: 168 LAYNQVEKI 176 L +NQV KI Sbjct: 229 LTFNQVSKI 237 >gi|312141016|ref|YP_004008352.1| transcription antitermination protein nusg [Rhodococcus equi 103S] gi|311890355|emb|CBH49673.1| transcription antitermination protein NusG [Rhodococcus equi 103S] Length = 265 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 77 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 136 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 +L++ + D+ + +++TP V GF+G PSP+T +E+ + + + Sbjct: 137 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVKFLMPQQGQKKPATAAAAAG 196 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 +PV V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPVE Sbjct: 197 DVSVAAAAKPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVE 256 Query: 168 LAYNQVEKI 176 L++NQV+KI Sbjct: 257 LSFNQVQKI 265 >gi|91774623|ref|YP_544379.1| transcription antitermination protein nusG [Methylobacillus flagellatus KT] gi|91708610|gb|ABE48538.1| transcription antitermination protein nusG [Methylobacillus flagellatus KT] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 2/179 (1%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ RWY VQ +S EK +++ R++RS + L +I +P E VV ++ G K +ER+ Sbjct: 1 MSGMRWYAVQAFSGFEKSVKKALEERIARSDIGDLFGDILVPVEEVVEMKNGVKSITERK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118 +PGYVL++ M+D+ +H +K TP+V F+G + P+P+ D E+E I+ +++ + P Sbjct: 61 LYPGYVLVQMQMSDESWHLVKSTPRVTAFIGGTAQKPTPIKDKEVEIILQRMDESKSNPT 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + F+ GE V V DGPF F+G V++V+ EKS++ V VVIFGR TPVEL ++QVEK V Sbjct: 121 QKLTFDKGESVRVIDGPFKDFSGSVEDVNYEKSKLRVSVVIFGRATPVELDFSQVEKEV 179 >gi|21230352|ref|NP_636269.1| transcription antitermination protein NusG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769654|ref|YP_244416.1| transcription antitermination protein NusG [Xanthomonas campestris pv. campestris str. 8004] gi|188992866|ref|YP_001904876.1| transcription antitermination protein NusG [Xanthomonas campestris pv. campestris str. B100] gi|18496618|gb|AAL74155.1|AF426391_2 NusG protein [Xanthomonas campestris pv. campestris] gi|21111906|gb|AAM40193.1| transcription antitermination factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574986|gb|AAY50396.1| transcription antitermination factor [Xanthomonas campestris pv. campestris str. 8004] gi|167734626|emb|CAP52836.1| transcription antitermination factor [Xanthomonas campestris pv. campestris] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 120/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+TPKV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHDEAGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|218290029|ref|ZP_03494196.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|258512684|ref|YP_003186118.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239863|gb|EED07051.1| NusG antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|257479410|gb|ACV59729.1| NusG antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 181 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ R+ G++ + + +P+E V ++ G+K +R+ + Sbjct: 5 EKQWYVIHTYSGYENKVKSNLESRVQTMGMEDRIFRVVVPTEEAVEIKNGKKRVVQRKTY 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P P+ E+E I++ + +PV Sbjct: 65 PGYVLVEMIMTDDSWYVVRNTPGVTGFVGSPGAGSKPVPLMPHEVEQILSSMGVNEAKPV 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F+VG+ V ++ GPFA G V+ V E ++ V V +FGR TP+E + QVE + Sbjct: 125 A--QFKVGDVVRLTSGPFADMVGTVEEVHPEHQKLKVLVSMFGRETPLEADFTQVEHL 180 >gi|289663461|ref|ZP_06485042.1| transcription antitermination protein NusG [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667608|ref|ZP_06488683.1| transcription antitermination protein NusG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHDEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|121534746|ref|ZP_01666567.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306766|gb|EAX47687.1| NusG antitermination factor [Thermosinus carboxydivorans Nor1] Length = 176 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ ++ G+++ + + +P E V ++ G+K ++R+ F Sbjct: 4 EKKWYVIHTYSGYENKVKANLEKKVRSMGMENEIFRVLVPMEDEVEIKDGKKKVAKRKVF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ ++ D+ ++ +++TP V GF+G+G P P++D+E+ HI+ + +P V Sbjct: 64 PGYVLVEMIVNDRSWYVVRNTPGVTGFVGSGTKPIPLSDAEVRHILKAMGIEEIKP--KV 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G+ V ++ G F ++ V V ++ ++ V + +FGR TPVEL + QVEKI Sbjct: 122 DISIGQLVRITSGAFENWTASVLEVYPDRGKLKVLINLFGRETPVELDFVQVEKI 176 >gi|260577197|ref|ZP_05845173.1| NusG antitermination factor [Rhodobacter sp. SW2] gi|259020577|gb|EEW23897.1| NusG antitermination factor [Rhodobacter sp. SW2] Length = 178 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 86/175 (49%), Positives = 116/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ +GL + E+ +P+E V+ VR+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIKTAVAEAGLQDEIEEVLVPTEEVIEVRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ MT+K YH I +V GFLG P + DSE+ I+N+VE ++ P + Sbjct: 61 MPGYVLVRMEMTNKGYHLISSINRVTGFLGPQGKPQAMRDSEVNAILNRVEEGLEAPRNL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE+V VSDGPF F G+V++VDE SR+ V V IFGR TP+EL + QV K Sbjct: 121 IRFEIGEQVQVSDGPFEGFTGMVEDVDEGHSRLKVTVSIFGRATPLELEFTQVTK 175 >gi|84625056|ref|YP_452428.1| transcription antitermination protein NusG [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575476|ref|YP_001912405.1| transcription antitermination protein NusG [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368996|dbj|BAE70154.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519928|gb|ACD57873.1| transcription termination/antitermination factor NusG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T +V+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|254462232|ref|ZP_05075648.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium HTCC2083] gi|206678821|gb|EDZ43308.1| transcription termination/antitermination factor NusG [Rhodobacteraceae bacterium HTCC2083] Length = 177 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 113/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I +GL+ + E+ +P+E V+ VR+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSTIENGLEDDIEEVLVPTEEVIEVRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ M+D+ YH I +V GFLG P P+ D+E+E I+ +V P + Sbjct: 61 MPGYVLVRMEMSDQGYHLINSINRVTGFLGPQGRPMPMRDAEVEAILGRVAEGEDAPRNI 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VD+E R+ V V IFGR TPVEL Y QV K Sbjct: 121 IHFEVGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRETPVELEYTQVNK 175 >gi|239993447|ref|ZP_04713971.1| transcription termination/antitermination factor NusG [Alteromonas macleodii ATCC 27126] Length = 183 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ YS E + +++ + ++ ++ +P+E VV +R G+K SER+F+P Sbjct: 9 KRWYVVQAYSQYESRVKKTLLEYIKMHNMEDYFGQVLVPTEEVVEMRAGQKRKSERKFYP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ MT++ +H +K P+V+GF+G + P P+T E + I+N++E V +P Sbjct: 69 GYVLVEMAMTEESWHLVKSVPRVLGFIGGTSDRPMPITQKEADAILNRLEENVDKPRPKT 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V DGPFA FNG+V+ VD EKSRV V V+IFGR TPV+L + QVEK Sbjct: 129 LFEPGEVIRVIDGPFADFNGVVEEVDYEKSRVKVSVLIFGRSTPVDLEFGQVEK 182 >gi|57234268|ref|YP_181717.1| transcription antitermination protein NusG [Dehalococcoides ethenogenes 195] gi|57224716|gb|AAW39773.1| transcription antitermination protein NusG [Dehalococcoides ethenogenes 195] Length = 177 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 2/174 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V YS E++ + + R+ + + + +P+E V V+ G + ++ P Sbjct: 6 KNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVEVKNGLRRTIRKKILP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ M DK + +++TP V GF+G+ P+ + E+ I++Q+E + P V Sbjct: 66 GYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTNLPPEEVSRILDQME--AESPRVKVG 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V V DGPF F G+V ++ EK +V V + +FGR TPVEL + QVEK+ Sbjct: 124 FRKGQSVRVIDGPFVDFIGMVDEINTEKGKVKVLLSLFGRETPVELDFLQVEKL 177 >gi|312144260|ref|YP_003995706.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904911|gb|ADQ15352.1| NusG antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 176 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS EKK ++ R++ +G++ + I +P+E + +KG+ ++R FPG Sbjct: 6 KWYVVHTYSGHEKKVKANLEKRIASTGMEDNIFRILVPTEEKIEKKKGKDEVVKKRIFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L++ + DK ++ +K+TP VIGF+ G P PV EI++I+ + ++ SV F Sbjct: 66 YILLQMDLNDKSWYVVKNTPGVIGFVSGGNKPLPVEKDEIDNILRSMGEKAKKV--SVEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 EVG+++ V+ GPF F GIVK + E+ +V V V +FGR TPVEL ++Q++ Sbjct: 124 EVGDQIVVTSGPFEDFEGIVKEIHPEQGKVKVLVSMFGRETPVELEFSQIK 174 >gi|33520005|ref|NP_878837.1| transcription antitermination protein NusG [Candidatus Blochmannia floridanus] gi|33504351|emb|CAD83244.1| transcription antitermination protein NusG [Candidatus Blochmannia floridanus] Length = 181 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + ++ + + + +I +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFENQVARALKEHIKIKDMSSMFGDIMVPTEEVVEMRSGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ VM +H +K+ PKV+GF+G + P+P+ D E++ I+ +++ +P Sbjct: 67 GYVLVQMVMNSSSWHLVKNVPKVLGFVGGTCDKPAPIGDKEVDAIICKLKQIGDKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + VSDGPF+ FN +V+ VD EK+R+ V V IFGR TPV+L + QVEK Sbjct: 127 LFEPGELIRVSDGPFSDFNAVVEEVDYEKNRLKVSVSIFGRSTPVDLDFAQVEK 180 >gi|312869692|ref|ZP_07729839.1| transcription termination/antitermination factor NusG [Lactobacillus oris PB013-T2-3] gi|311094741|gb|EFQ53038.1| transcription termination/antitermination factor NusG [Lactobacillus oris PB013-T2-3] Length = 181 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E + ++ R G+ + + + E V V+ G+ F Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMQDYIFRVVVAEETVREVKDGQAKEVTENTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ ++TP V GFL G G P+P+ E+E IM ++ V Sbjct: 65 PGYVLVEMIMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPDEVERIMKRMG--ADITV 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S + + G+ V V GPFA G V VD EK ++ V V +FGR T EL ++QV+ + Sbjct: 123 SDIDVKEGDTVKVIAGPFADLTGKVTEVDHEKQKLKVNVEMFGRETSAELGFDQVDTV 180 >gi|332188803|ref|ZP_08390513.1| transcription termination/antitermination factor NusG [Sphingomonas sp. S17] gi|332011156|gb|EGI53251.1| transcription termination/antitermination factor NusG [Sphingomonas sp. S17] Length = 178 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 87/177 (49%), Positives = 116/177 (65%), Gaps = 3/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K +SI +R GLDHLV +I +P+E V R+G+K+ ER+F Sbjct: 1 MA-RWYIIHAYSGFEGKVRDSIMAEATRLGLDHLVAQIEVPTETVTEARRGKKIAVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL K M D+VYH +K+TPKV GFLG P +++SE ++N E A P Sbjct: 60 MPGYVLAKLDMNDQVYHLVKNTPKVTGFLGAMGKPQAISESEATRMLNSKEEAAAAPKHK 119 Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +E+G+ V V +GPFASFNG+V+ +D +KS+V V V IFGR TPVEL + QVE+ Sbjct: 120 VKVDYEIGDAVKVLEGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFEQVER 176 >gi|296168428|ref|ZP_06850308.1| transcription antitermination protein NusG [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896722|gb|EFG76357.1| transcription antitermination protein NusG [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 250 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 61 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 120 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS +T ++ + Sbjct: 121 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 180 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++RP V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 181 AAAEAGGLERPAVEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 240 Query: 167 ELAYNQVEKI 176 EL ++QV KI Sbjct: 241 ELTFSQVSKI 250 >gi|261409534|ref|YP_003245775.1| NusG antitermination factor [Paenibacillus sp. Y412MC10] gi|315649717|ref|ZP_07902801.1| NusG antitermination factor [Paenibacillus vortex V453] gi|329925607|ref|ZP_08280448.1| transcription termination/antitermination factor NusG [Paenibacillus sp. HGF5] gi|261285997|gb|ACX67968.1| NusG antitermination factor [Paenibacillus sp. Y412MC10] gi|315274905|gb|EFU38281.1| NusG antitermination factor [Paenibacillus vortex V453] gi|328939736|gb|EGG36078.1| transcription termination/antitermination factor NusG [Paenibacillus sp. HGF5] Length = 177 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+ Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEEIVNKDGKKKTVMRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ + TD ++ +++TP V GF G+G P+P+ E+E I+ + ++ P Sbjct: 61 YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHMG--MEEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++ E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI Sbjct: 119 KPKIEFDIKESVRIKVGPFANFVGSVEEILAEKSKLKVHVNMFGRETPLELDYTQVEKI 177 >gi|56551620|ref|YP_162459.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241761255|ref|ZP_04759343.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543194|gb|AAV89348.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241374162|gb|EER63659.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 179 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 120/178 (67%), Gaps = 4/178 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+ Sbjct: 1 MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---QRP 117 FPGYVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N+ A ++ Sbjct: 60 FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNRKAEAEVAGKKA 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+ Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177 >gi|73663528|ref|YP_302309.1| transcription antitermination factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496043|dbj|BAE19364.1| transcription antitermination factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTLTKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQMG--MKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V ++GE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+ Sbjct: 125 IDVQIDLGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182 >gi|296268525|ref|YP_003651157.1| NusG antitermination factor [Thermobispora bispora DSM 43833] gi|296091312|gb|ADG87264.1| NusG antitermination factor [Thermobispora bispora DSM 43833] Length = 246 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E + ++I R+ ++ + ++ +P+ V ++ G+K + R PGY Sbjct: 67 WYVVHSYAGYENRVKQNIESRIISLNMEDYIYQVEVPTHTVTEIKGGKKTPVKERVLPGY 126 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--------NQVEAAVQR 116 VL++ V+TD+ + +++TP V GF+G PSP+ ++ ++ +A+ + Sbjct: 127 VLVRMVLTDESWAAVRNTPGVTGFVGLSNKPSPLGLDDVARLLAPEPEEEEAAAKASAKS 186 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V FEVGE V V DGPFA+ V V E ++ V V IFGR TPVEL+++QV K+ Sbjct: 187 AAPAVEFEVGESVTVMDGPFATLPATVSEVSPESQKLKVLVSIFGRETPVELSFDQVAKL 246 >gi|89053051|ref|YP_508502.1| transcription antitermination protein nusG [Jannaschia sp. CCS1] gi|88862600|gb|ABD53477.1| transcription antitermination protein nusG [Jannaschia sp. CCS1] Length = 177 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 112/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EK+ E I ++ GL+ ++ E+ +P E V+ +R+G+KV RRF Sbjct: 1 MAKRWYSVSVLSNFEKRIAEQIRTAVAEKGLEDVIEEVLVPEEDVIEIRRGKKVTVPRRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++ MTD YH I +V GFLG P P+ D E+ I+N+VE P S+ Sbjct: 61 MPGYVLVRMEMTDVGYHVISSIQRVTGFLGPQGRPMPMRDEEVNSILNRVEEGEASPRST 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F+VGE+V V+DGPF F+G+V+ VDE+ R+ V V IFGR TPVEL Y QV K Sbjct: 121 ITFDVGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATPVELEYTQVSK 175 >gi|166710815|ref|ZP_02242022.1| transcription antitermination protein NusG [Xanthomonas oryzae pv. oryzicola BLS256] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|254294452|ref|YP_003060475.1| NusG antitermination factor [Hirschia baltica ATCC 49814] gi|254042983|gb|ACT59778.1| NusG antitermination factor [Hirschia baltica ATCC 49814] Length = 180 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 96/180 (53%), Positives = 124/180 (68%), Gaps = 4/180 (2%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M RWYIV YSN EKK SI + + L+HL EI +P+E VVSV +G+K +ERR Sbjct: 1 MAKARWYIVHAYSNFEKKVAASIREQAAMQELEHLFEEIEVPTEEVVSVVRGKKKTTERR 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP 117 +FPGYVL+K +TD YH +K+TPKV GFLG G+ P PV SE++ IM Q A +RP Sbjct: 61 YFPGYVLVKMQLTDAAYHLVKETPKVTGFLGADGGKKPLPVPQSEVDRIMGQASEAAERP 120 Query: 118 V-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V +EVGE+V V+DGPFASF G V++VD E +R+ V V IFGR TPV+L + QVEK+ Sbjct: 121 EIPNVIYEVGEKVKVTDGPFASFEGAVEDVDLEAARLKVTVSIFGRETPVDLEFGQVEKL 180 >gi|297172924|gb|ADI23885.1| transcription antiterminator [uncultured gamma proteobacterium HF4000_48J03] Length = 177 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++QVYSN EKK + + R GL +I +P+E +V ++ G+K SER+F Sbjct: 1 MEYQWYVLQVYSNYEKKVLTMLQDRSKVLGLSEQFADIVVPTEEIVEMKGGQKKTSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+ + D+ +H + P V+GF+G E P+P++D E+ I+N+ E A P Sbjct: 61 FPGYVLVNMNLNDETWHFVNSIPNVMGFVGGTSEKPAPISDREVMIILNKAEDAANAPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ GE V V +GPF FNG+V+ V+ EK+++ V V I GR TPVEL +NQVEK Sbjct: 121 KTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKNKLFVAVQILGRATPVELNFNQVEK 176 >gi|32491266|ref|NP_871520.1| hypothetical protein WGLp517 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166473|dbj|BAC24663.1| nusG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 181 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E K +S+ ++H E+ IP+E ++ +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFESKVAQSLKEHTKLYKMEHFFGEVMIPTEEILEIRHGKRKKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI VM D ++ +K+ PKV+GF+G + P+P++D EIE+I+ +++ +P Sbjct: 67 GYVLIHMVMNDSSWYLVKNIPKVMGFVGGTSDKPAPISDKEIEYIVKRLQKIGNKPRPKT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V DGPF+ FNG+V+ VD EK+R+ V V+IFGR TPVEL ++Q+EK Sbjct: 127 LFEPGELVRVKDGPFSDFNGVVEEVDYEKNRLKVSVLIFGRATPVELDFSQLEK 180 >gi|15923525|ref|NP_371059.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926213|ref|NP_373746.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus N315] gi|21282220|ref|NP_645308.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MW2] gi|49482766|ref|YP_039990.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485401|ref|YP_042622.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651412|ref|YP_185468.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus COL] gi|82750244|ref|YP_415985.1| transcription antitermination protein [Staphylococcus aureus RF122] gi|87160422|ref|YP_493224.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194298|ref|YP_499090.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266996|ref|YP_001245939.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus JH9] gi|150393043|ref|YP_001315718.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus JH1] gi|151220710|ref|YP_001331532.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978864|ref|YP_001441123.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus Mu3] gi|161508776|ref|YP_001574435.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141027|ref|ZP_03565520.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315646|ref|ZP_04838859.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731141|ref|ZP_04865306.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732544|ref|ZP_04866709.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus TCH130] gi|255005330|ref|ZP_05143931.2| transcription antitermination protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424650|ref|ZP_05601077.1| transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus 55/2053] gi|257427318|ref|ZP_05603717.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 65-1322] gi|257429954|ref|ZP_05606338.1| transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus 68-397] gi|257432656|ref|ZP_05609016.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus E1410] gi|257435560|ref|ZP_05611608.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus M876] gi|257795365|ref|ZP_05644344.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9781] gi|258408948|ref|ZP_05681229.1| transcription termination-antitermination factor NusG [Staphylococcus aureus A9763] gi|258420414|ref|ZP_05683357.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9719] gi|258422617|ref|ZP_05685523.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9635] gi|258439335|ref|ZP_05690267.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9299] gi|258444075|ref|ZP_05692412.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8115] gi|258446343|ref|ZP_05694501.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A6300] gi|258448436|ref|ZP_05696551.1| transcription antitermination protein nusG [Staphylococcus aureus A6224] gi|258452731|ref|ZP_05700729.1| transcription antitermination protein nusG [Staphylococcus aureus A5948] gi|258453792|ref|ZP_05701766.1| transcription antitermination protein nusG [Staphylococcus aureus A5937] gi|262049578|ref|ZP_06022447.1| transcription antitermination protein [Staphylococcus aureus D30] gi|262052423|ref|ZP_06024623.1| transcription antitermination protein [Staphylococcus aureus 930918-3] gi|269202159|ref|YP_003281428.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus ED98] gi|282894971|ref|ZP_06303194.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8117] gi|282903124|ref|ZP_06311015.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C160] gi|282904914|ref|ZP_06312772.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus Btn1260] gi|282907864|ref|ZP_06315699.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910177|ref|ZP_06317981.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus WBG10049] gi|282913369|ref|ZP_06321158.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus M899] gi|282915859|ref|ZP_06323624.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus D139] gi|282918324|ref|ZP_06326061.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C427] gi|282923286|ref|ZP_06330966.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C101] gi|282924450|ref|ZP_06332122.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9765] gi|282928873|ref|ZP_06336464.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A10102] gi|283769692|ref|ZP_06342584.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus H19] gi|283957334|ref|ZP_06374787.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus A017934/97] gi|284023546|ref|ZP_06377944.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus 132] gi|293500415|ref|ZP_06666266.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 58-424] gi|293509360|ref|ZP_06668071.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus M809] gi|293523947|ref|ZP_06670634.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus M1015] gi|294850312|ref|ZP_06791046.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9754] gi|295406913|ref|ZP_06816716.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8819] gi|295427074|ref|ZP_06819710.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275782|ref|ZP_06858289.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MR1] gi|297208750|ref|ZP_06925178.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246263|ref|ZP_06930112.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8796] gi|297590573|ref|ZP_06949212.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus MN8] gi|300912840|ref|ZP_07130282.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus TCH70] gi|304381865|ref|ZP_07364512.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60390427|sp|Q6GBV1|NUSG_STAAS RecName: Full=Transcription antitermination protein nusG gi|60390441|sp|Q6GJD2|NUSG_STAAR RecName: Full=Transcription antitermination protein nusG gi|60392842|sp|P0A095|NUSG_STAAM RecName: Full=Transcription antitermination protein nusG gi|60392843|sp|P0A096|NUSG_STAAN RecName: Full=Transcription antitermination protein nusG gi|60392844|sp|P0A097|NUSG_STAAW RecName: Full=Transcription antitermination protein nusG gi|81695157|sp|Q5HID9|NUSG_STAAC RecName: Full=Transcription antitermination protein nusG gi|110815889|sp|Q2G0P2|NUSG_STAA8 RecName: Full=Transcription antitermination protein nusG gi|110815890|sp|P0C1S3|NUSG_STAAE RecName: Full=Transcription antitermination protein nusG gi|13183703|gb|AAK15310.1|AF327733_7 NusG [Staphylococcus aureus subsp. aureus str. Newman] gi|2078377|gb|AAB54018.1| NusG [Staphylococcus aureus] gi|13700426|dbj|BAB41724.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus N315] gi|14246303|dbj|BAB56697.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203656|dbj|BAB94356.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MW2] gi|49240895|emb|CAG39562.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243844|emb|CAG42269.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285598|gb|AAW37692.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus COL] gi|82655775|emb|CAI80175.1| transcription antitermination protein [Staphylococcus aureus RF122] gi|87126396|gb|ABD20910.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201856|gb|ABD29666.1| transcription antitermination protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740065|gb|ABQ48363.1| transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus JH9] gi|149945495|gb|ABR51431.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus JH1] gi|150373510|dbj|BAF66770.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720999|dbj|BAF77416.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367585|gb|ABX28556.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725106|gb|EES93835.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729473|gb|EES98202.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus TCH130] gi|257272220|gb|EEV04343.1| transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus 55/2053] gi|257275511|gb|EEV06984.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 65-1322] gi|257279151|gb|EEV09752.1| transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus 68-397] gi|257282071|gb|EEV12206.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus E1410] gi|257284751|gb|EEV14870.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus M876] gi|257789337|gb|EEV27677.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9781] gi|257840299|gb|EEV64762.1| transcription termination-antitermination factor NusG [Staphylococcus aureus A9763] gi|257843604|gb|EEV68010.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9719] gi|257847189|gb|EEV71197.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9635] gi|257847672|gb|EEV71671.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9299] gi|257850745|gb|EEV74690.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8115] gi|257854937|gb|EEV77882.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A6300] gi|257858305|gb|EEV81192.1| transcription antitermination protein nusG [Staphylococcus aureus A6224] gi|257859604|gb|EEV82454.1| transcription antitermination protein nusG [Staphylococcus aureus A5948] gi|257864048|gb|EEV86802.1| transcription antitermination protein nusG [Staphylococcus aureus A5937] gi|259159669|gb|EEW44713.1| transcription antitermination protein [Staphylococcus aureus 930918-3] gi|259162318|gb|EEW46891.1| transcription antitermination protein [Staphylococcus aureus D30] gi|262074449|gb|ACY10422.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus ED98] gi|269940109|emb|CBI48485.1| transcription antitermination protein [Staphylococcus aureus subsp. aureus TW20] gi|282314154|gb|EFB44544.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C101] gi|282317458|gb|EFB47830.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C427] gi|282320155|gb|EFB50500.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus D139] gi|282322401|gb|EFB52723.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus M899] gi|282325569|gb|EFB55877.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus WBG10049] gi|282328248|gb|EFB58526.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331739|gb|EFB61250.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus Btn1260] gi|282589481|gb|EFB94570.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A10102] gi|282592861|gb|EFB97865.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9765] gi|282596079|gb|EFC01040.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus C160] gi|282762653|gb|EFC02790.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8117] gi|283459839|gb|EFC06929.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus H19] gi|283469828|emb|CAQ49039.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ST398] gi|283790785|gb|EFC29600.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus A017934/97] gi|285816236|gb|ADC36723.1| Transcription antitermination protein NusG [Staphylococcus aureus 04-02981] gi|290920910|gb|EFD97971.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus M1015] gi|291095420|gb|EFE25681.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 58-424] gi|291467457|gb|EFF09972.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus M809] gi|294822824|gb|EFG39259.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A9754] gi|294968144|gb|EFG44170.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8819] gi|295128862|gb|EFG58492.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886695|gb|EFH25600.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176861|gb|EFH36119.1| transcription termination/antitermination factor NusG [Staphylococcus aureus A8796] gi|297576872|gb|EFH95587.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus MN8] gi|298693867|gb|ADI97089.1| transcription antitermination protein NusG [Staphylococcus aureus subsp. aureus ED133] gi|300885944|gb|EFK81147.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus TCH70] gi|302332249|gb|ADL22442.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus JKD6159] gi|302750427|gb|ADL64604.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339651|gb|EFM05598.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312439044|gb|ADQ78115.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus TCH60] gi|312829032|emb|CBX33874.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128829|gb|EFT84828.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus CGS03] gi|315193900|gb|EFU24294.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus CGS00] gi|315196652|gb|EFU26999.1| transcriptional antiterminator NusG [Staphylococcus aureus subsp. aureus CGS01] gi|320141599|gb|EFW33438.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus MRSA131] gi|320141772|gb|EFW33600.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus MRSA177] gi|323439806|gb|EGA97523.1| transcription antitermination protein [Staphylococcus aureus O11] gi|323443092|gb|EGB00712.1| transcription antitermination protein [Staphylococcus aureus O46] gi|329313256|gb|AEB87669.1| Transcription antitermination protein nusG [Staphylococcus aureus subsp. aureus T0131] gi|329727905|gb|EGG64354.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 21172] gi|329731015|gb|EGG67388.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 21189] gi|329731956|gb|EGG68312.1| transcription termination/antitermination factor NusG [Staphylococcus aureus subsp. aureus 21193] Length = 182 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ + ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTTVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|85710261|ref|ZP_01041326.1| transcription antiterminator [Erythrobacter sp. NAP1] gi|85688971|gb|EAQ28975.1| transcription antiterminator [Erythrobacter sp. NAP1] Length = 178 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYI+ YS E K E+I R GL V EI +P+E V V++G+KV ER+F Sbjct: 1 MS-RWYIIHAYSGFENKVKEAIIAEADRLGLSEGVEEIEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118 PGYVL K M D +YH +K+TPKV GFLG P P+++ E VE A P Sbjct: 60 MPGYVLAKLRMNDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKTQ 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SV +E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE + Sbjct: 120 VSVDYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELDFEQVELV 177 >gi|58583220|ref|YP_202236.1| transcription antitermination protein NusG [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427814|gb|AAW76851.1| transcription antitermination factor [Xanthomonas oryzae pv. oryzae KACC10331] Length = 203 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 119/183 (65%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R++R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 20 KRWYVVHAYSGFEKSVAQALRDRIARTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 79 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T +V+GF+G + P P+ D E + I+ +V+ Sbjct: 80 GYVLVQIETHEEAGIPRIDNESWHLVKETSRVMGFIGGTADRPLPIRDEEADAILQRVQD 139 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 140 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 199 Query: 173 VEK 175 VEK Sbjct: 200 VEK 202 >gi|325916475|ref|ZP_08178744.1| transcription antitermination protein nusG [Xanthomonas vesicatoria ATCC 35937] gi|325537264|gb|EGD08991.1| transcription antitermination protein nusG [Xanthomonas vesicatoria ATCC 35937] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 76/183 (41%), Positives = 118/183 (64%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRTEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|457386|gb|AAA27500.1| transcription factor [Thermus thermophilus] Length = 244 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++ Sbjct: 61 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 120 Query: 60 FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112 FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + Sbjct: 121 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 180 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q Sbjct: 181 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 240 Query: 173 VEK 175 V K Sbjct: 241 VVK 243 >gi|262277083|ref|ZP_06054876.1| transcription termination/antitermination factor NusG [alpha proteobacterium HIMB114] gi|262224186|gb|EEY74645.1| transcription termination/antitermination factor NusG [alpha proteobacterium HIMB114] Length = 174 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 120/174 (68%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIVQ +++ EKK E I L ++ L EI +P++ V ++KG++ ++++FP Sbjct: 1 MKWYIVQAHASAEKKLSEQIKEELEKADLGSKFGEILVPTQDVTEIKKGKRSVVKKKYFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+L+K MT+ VYH IK KV GFLG PSP+++ E+ I+ +E +V P SS+ Sbjct: 61 GYILVKLDMTNDVYHLIKSLKKVSGFLGPQGKPSPISEEEVNKIVGNMEESVANPSSSIT 120 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+VGE+V V DGPFASFNG ++ +DE+KSR+ V V IFGR TPV+L Y+QVEK+ Sbjct: 121 FQVGEQVKVCDGPFASFNGSIEEIDEDKSRLKVSVSIFGRPTPVDLDYSQVEKV 174 >gi|255262997|ref|ZP_05342339.1| transcription termination/antitermination factor NusG [Thalassiobium sp. R2A62] gi|255105332|gb|EET48006.1| transcription termination/antitermination factor NusG [Thalassiobium sp. R2A62] Length = 177 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 113/175 (64%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + + L + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVEEAELQDQIDEVLVPTEEVIEIRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH + +V GFLG P P+ D+E+ I+N+V+ + P + Sbjct: 61 MPGYVLVHMEMSDEGYHLVNSINRVTGFLGPQGRPMPMRDAEVNQILNRVQEGEESPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE+V V+DGPF F+G+V+ VDEE R+ V V IFGR TPVEL + QV K Sbjct: 121 IHFEVGEKVKVADGPFEDFDGMVEEVDEENLRLKVTVSIFGRATPVELEFTQVVK 175 >gi|285017308|ref|YP_003375019.1| transcription antitermination protein nusg [Xanthomonas albilineans GPE PC73] gi|283472526|emb|CBA15031.1| probable transcription antitermination protein nusg [Xanthomonas albilineans] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R + ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRDEMQERFGDVLVPTEEVIEMRSGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+TPKV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHDEGGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDQEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V+DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|256825902|ref|YP_003149862.1| transcription antitermination protein nusG [Kytococcus sedentarius DSM 20547] gi|256689295|gb|ACV07097.1| transcription antitermination protein nusG [Kytococcus sedentarius DSM 20547] Length = 296 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E V ++ +K ER PGY Sbjct: 106 WYVLHTYAGYEKRVKANLEQRAVSMNMEDYIFQAEVPMETVTEIKNNQKKTVERVRMPGY 165 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 L++ +T+ + T+++TP V GF+G +P P++ E+ ++ + + Sbjct: 166 CLVRMDLTNASWGTVRNTPGVTGFVGNATDPVPLSLGEVFDMLAPDFESQAQAAAGSQEG 225 Query: 117 -----------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + V FEVGE V V +GPF + + ++ E +V V V IFGR TP Sbjct: 226 ATTVEPKSGTPQMPLVDFEVGEAVTVMEGPFETLPATISEINVEARKVQVLVSIFGRETP 285 Query: 166 VELAYNQVEKI 176 VELA+NQV KI Sbjct: 286 VELAFNQVAKI 296 >gi|86137179|ref|ZP_01055757.1| transcription termination/antitermination factor NusG [Roseobacter sp. MED193] gi|85826503|gb|EAQ46700.1| transcription termination/antitermination factor NusG [Roseobacter sp. MED193] Length = 177 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 115/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I ++ L+ + E+ +P+E V+ +R+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKIAEQIRTSVAEQRLEDEIDEVLVPTEEVIEIRRGKKVPTERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ M+D+ YH I +V GFLG P P+ D+E++ I+ +VE V+ P + Sbjct: 61 MPGYVLVHMEMSDRGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+G++V V+DGPF F+G+V+ VD+E ++ V V IFGR TPVEL Y QV K Sbjct: 121 ISFEIGDKVKVNDGPFEDFDGMVEGVDDEAQKLKVSVSIFGRETPVELDYTQVTK 175 >gi|15828020|ref|NP_302283.1| transcription antitermination protein NusG [Mycobacterium leprae TN] gi|221230497|ref|YP_002503913.1| transcription antitermination protein NusG [Mycobacterium leprae Br4923] gi|18202753|sp|Q9CBK0|NUSG_MYCLE RecName: Full=Transcription antitermination protein nusG gi|13093573|emb|CAC30860.1| transcription antitermination protein nusG [Mycobacterium leprae] gi|219933604|emb|CAR72002.1| transcription antitermination protein nusG [Mycobacterium leprae Br4923] Length = 228 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS + ++ + Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVSTA 158 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++R + V +EVGE V V DGPFA+ + V+ E+ ++ V V IFGR TPV Sbjct: 159 AAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 218 Query: 167 ELAYNQVEKI 176 EL ++QV KI Sbjct: 219 ELTFSQVSKI 228 >gi|220930952|ref|YP_002507860.1| NusG antitermination factor [Halothermothrix orenii H 168] gi|219992262|gb|ACL68865.1| NusG antitermination factor [Halothermothrix orenii H 168] Length = 176 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K ++ R+ + ++ + I +P+E + +KG++ E+R F Sbjct: 4 EKKWYVVHTYSGHENKVKANLEKRIKATDMEDKIFRILVPTEEKIESKKGKQKKVEKRIF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ +MTD ++ +++TP V GF+ +G P P+ E +HI+ + ++ + Sbjct: 64 PGYVLVEMIMTDDSWYVVRNTPGVTGFVSSGTKPLPLQPEEAKHILRGMG--IEDDKIEL 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG++V + DGPF F G +K V ++S+V V V +FGR TP+EL ++Q+EKI Sbjct: 122 DFGVGDKVKIVDGPFEEFIGEIKEVHPQQSKVKVLVSMFGRETPLELEFSQIEKI 176 >gi|45644660|gb|AAS73048.1| predicted transcription antiterminator NusG [uncultured marine gamma proteobacterium EBAC20E09] Length = 175 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++Q YS E+K ++ R+ + L EI IP+E++V ++ G K +ER+FFP Sbjct: 1 MDWYVIQAYSGYEQKVKAALEERIMLNNLSEKFGEILIPTEQIVELKAGTKKTTERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+LI+ + D + ++ TP+V GF+G + P P+++ +++ I+N++E P Sbjct: 61 GYILIQMNLEDDSWQLVQSTPRVSGFVGGTRDKPLPISEDDVKSIINRIEVGEDAPAPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE + V DGPF FNG+V+ VD E++ V V I GR TPVEL + Q+EK Sbjct: 121 IYEPGEVIRVCDGPFNDFNGVVEEVDYERNIAKVSVQILGRATPVELDFIQIEK 174 >gi|294627829|ref|ZP_06706408.1| transcription antitermination protein NusG [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597743|gb|EFF41901.1| transcription antitermination protein NusG [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 185 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+ R+ ++ ++ +P+E V+ +R G+K SER+FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRIVRAEMEDRFGDVLVPTEEVIEMRAGQKRRSERKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVL++ + ++ +H +K+T KV+GF+G + P P+ D E + I+ +V+ Sbjct: 62 GYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V++P V FE G+ V V++GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + Q Sbjct: 122 GVEKPRPKVLFEPGQMVRVTEGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181 Query: 173 VEK 175 VEK Sbjct: 182 VEK 184 >gi|114771284|ref|ZP_01448704.1| Probable transcription antitermination protein NusG [alpha proteobacterium HTCC2255] gi|114548209|gb|EAU51096.1| Probable transcription antitermination protein NusG [alpha proteobacterium HTCC2255] Length = 177 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 117/175 (66%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + + G+ + ++ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAELINEAVEQEGMQDEIEQVLVPTEEVIEVRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGY+L++ M++K YH I + +V GFLG PSP+ D E+ I+NQVE V+ P + Sbjct: 61 MPGYLLVRMDMSEKGYHLINNINRVTGFLGQPGKPSPMRDKEVAFILNQVEEGVENPRNL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F++GE+V V++GPF F G+V+ VD+E SR+ V V IFGR TPVEL + QV K Sbjct: 121 ITFDIGEQVNVTEGPFEGFAGMVEEVDQENSRLKVTVSIFGRATPVELEFTQVMK 175 >gi|78358031|ref|YP_389480.1| transcription antitermination protein nusG [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220436|gb|ABB39785.1| transcription antitermination protein nusG [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 184 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 110/172 (63%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+PG Sbjct: 12 RWYIVHTYSGFEQRVEQTIRQMIRTGEAQDLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+++K +MTD +H +++ +V GF+G P+P+ DSE E I+ +E+ ++P F Sbjct: 72 YIMVKMIMTDFSWHLVQNINRVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 131 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 132 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVNK 183 >gi|260752788|ref|YP_003225681.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552151|gb|ACV75097.1| NusG antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 179 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 119/178 (66%), Gaps = 4/178 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWYI+ YS E K E++ R GL LV I +P+E+ V VR+G+KV ER+ Sbjct: 1 MS-RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKC 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---QRP 117 FPGYVL K M + VYH +K+TPKV GFLG P P++D+E EHI+N A ++ Sbjct: 60 FPGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKA 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE+G++V V +GPFASFNG+V+++D +++RV V V IFGR TPVEL + QVE+ Sbjct: 120 QIKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177 >gi|320095594|ref|ZP_08027257.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319977502|gb|EFW09182.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 309 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 11/187 (5%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K R Sbjct: 121 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDSIFSVEVPDEYVMEYRGTAKKRVRRV 180 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRP 117 PGY ++ ++ Y +K+TP V GF+G NP P++ E+ ++ N +E A ++ Sbjct: 181 RIPGYAIVCMDFNEESYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEKK 240 Query: 118 VSS--------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 FEVGE V V DGPF + + + + E ++ V V IF R TP+EL Sbjct: 241 KDKPAPVQEIRTAFEVGETVTVIDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 300 Query: 170 YNQVEKI 176 ++QVEK+ Sbjct: 301 FDQVEKL 307 >gi|224475684|ref|YP_002633290.1| transcription antitermination protein [Staphylococcus carnosus subsp. carnosus TM300] gi|548394|sp|P36264|NUSG_STACT RecName: Full=Transcription antitermination protein nusG gi|426473|emb|CAA53738.1| nusG [Staphylococcus carnosus] gi|222420291|emb|CAL27105.1| transcription antitermination protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 182 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLTKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMG--MKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V EVGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVEVEVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|85375046|ref|YP_459108.1| transcription antiterminator [Erythrobacter litoralis HTCC2594] gi|84788129|gb|ABC64311.1| transcription antiterminator [Erythrobacter litoralis HTCC2594] Length = 178 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ++I R GL V E+ +P+E V +++G+KV +ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVRDAIIAEADRLGLSDGVEEVEVPTETVTEIKRGKKVQTERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL K MTD +YH +K+TPKV GFLG P P+++ E VE A P Sbjct: 60 MPGYVLAKLQMTDDIYHLVKNTPKVTGFLGNNNKPQPISEKEAARYFGGVEEAKAAPKKD 119 Query: 121 V--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +E+G++V V DGPFASFNG+V+ +D +K++V V V IFGR TPVEL + QVE + Sbjct: 120 IQVDYEIGDQVKVLDGPFASFNGVVEELDFDKAKVKVSVSIFGRATPVELEFEQVELV 177 >gi|150010981|gb|ABR57147.1| transcription antitermination protein [Staphylococcus xylosus] Length = 182 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEKIFRVVIPEEEETQVKDGKAKTLSKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYIVRNTPGVTGFVGSAGAGSKPNPLLPEEARFILKQMG--MKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE+V + GPFA+ G ++ ++ +K ++ V V +FGR TPVE+ ++QVEK+ Sbjct: 125 IDVQVELGEQVRIKSGPFANQVGEIQEIETDKFKLTVLVDMFGRETPVEVEFDQVEKL 182 >gi|46581327|ref|YP_012135.1| transcription antitermination protein NusG [Desulfovibrio vulgaris str. Hildenborough] gi|120601494|ref|YP_965894.1| NusG antitermination factor [Desulfovibrio vulgaris DP4] gi|46450749|gb|AAS97395.1| transcription antitermination protein NusG [Desulfovibrio vulgaris str. Hildenborough] gi|120561723|gb|ABM27467.1| transcription antitermination protein nusG [Desulfovibrio vulgaris DP4] gi|311234987|gb|ADP87841.1| NusG antitermination factor [Desulfovibrio vulgaris RCH1] Length = 183 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 107/172 (62%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+PG Sbjct: 11 RWYIVHTYSGFENRVEQTIREMIRTGQSQDEIVEVVVPTEKVIELVKGEKRTSTRKFYPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P F Sbjct: 71 YVMVKMFMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILAMMESRQEQPRPKFNF 130 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 131 DRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 182 >gi|254467958|ref|ZP_05081364.1| transcription termination/antitermination factor NusG [beta proteobacterium KB13] gi|207086768|gb|EDZ64051.1| transcription termination/antitermination factor NusG [beta proteobacterium KB13] Length = 178 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 MT RWY VQ YS EK + + R+ S + ++ +P E VV ++ G+K SERR Sbjct: 1 MTKRWYAVQAYSGYEKIVQKGLLERIEISNIKDQFGDVLVPVEEVVELKAGQKTISERRL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYVL++ M D +H ++ TPKV F+G P+P+ D E+E I+ +++ + P Sbjct: 61 YPGYVLVQMDMNDDSWHLVRSTPKVTAFIGGSALKPTPIKDKEVELILRRMDDSKVNPTQ 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FEVGE + V DGPF F+G V+ ++ EK+++ VEVVIFGR TPVEL + Q++K V Sbjct: 121 KLTFEVGESIRVIDGPFKDFSGSVQEINYEKNKLRVEVVIFGRATPVELDFGQIQKEV 178 >gi|304315927|ref|YP_003851072.1| NusG antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777429|gb|ADL67988.1| NusG antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 175 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E K ++ + L +L+ +I +P+E+VV ++ G+K + +R+ F Sbjct: 6 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQIVVPTEKVVEIKDGKKKSVDRKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV Sbjct: 66 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEAQTSV 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI Sbjct: 120 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 174 >gi|223042705|ref|ZP_03612753.1| transcription termination/antitermination factor NusG [Staphylococcus capitis SK14] gi|314932760|ref|ZP_07840129.1| transcription termination/antitermination factor NusG [Staphylococcus caprae C87] gi|222443559|gb|EEE49656.1| transcription termination/antitermination factor NusG [Staphylococcus capitis SK14] gi|313654441|gb|EFS18194.1| transcription termination/antitermination factor NusG [Staphylococcus caprae C87] Length = 182 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDQSWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|294496969|ref|YP_003560669.1| transcription termination/antitermination factor NusG [Bacillus megaterium QM B1551] gi|294346906|gb|ADE67235.1| transcription termination/antitermination factor NusG [Bacillus megaterium QM B1551] Length = 177 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKITKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ + Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMG--MDEK 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177 >gi|126724847|ref|ZP_01740690.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium HTCC2150] gi|126706011|gb|EBA05101.1| transcription termination/antitermination factor NusG [Rhodobacterales bacterium HTCC2150] Length = 177 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 114/175 (65%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E I + +GL+ + E+ +P+E V+ VR+G+KV +ERRF Sbjct: 1 MAKRWYSVSVLSNYEKKIAEQIRTDVITAGLEDEIEEVLVPTEEVIEVRRGKKVTAERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVLI+ M+D+ +H I +V GFLG P P+ D+E+ I+N+VE P + Sbjct: 61 MPGYVLIRMEMSDRGFHLINSINRVTGFLGQQGRPMPMRDAEVNQILNRVEEGEAAPRNL 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +FFE+GE+V V+ GPF F G+V+ VD+E R+ V V IFGR TPVEL Y +V K Sbjct: 121 IFFEIGEKVKVNGGPFEGFEGMVEEVDDENQRLKVTVSIFGRETPVELEYTEVTK 175 >gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS] gi|119866991|ref|YP_936943.1| transcription antitermination protein NusG [Mycobacterium sp. KMS] gi|108768315|gb|ABG07037.1| transcription antitermination protein nusG [Mycobacterium sp. MCS] gi|119693080|gb|ABL90153.1| transcription antitermination protein nusG [Mycobacterium sp. KMS] Length = 270 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 80 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 139 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 140 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 199 Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP Sbjct: 200 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 259 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 260 VELTFNQVSKI 270 >gi|222112416|ref|YP_002554680.1| nusg antitermination factor [Acidovorax ebreus TPSY] gi|221731860|gb|ACM34680.1| NusG antitermination factor [Acidovorax ebreus TPSY] Length = 196 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P + Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195 >gi|295702336|ref|YP_003595411.1| transcription termination/antitermination factor NusG [Bacillus megaterium DSM 319] gi|294799995|gb|ADF37061.1| transcription termination/antitermination factor NusG [Bacillus megaterium DSM 319] Length = 177 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ ++ ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVETMGMQDKIFRVVVPEEEEREIKNNKEKVTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD ++ +++TP V GF+ G+G P+ + E+E I+ Q+ + Sbjct: 61 FPGYVLVEIIMTDDSWYVVRNTPGVTGFVGSAGSGSKPTALLPEEVEMILKQMG--MDEK 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+ E V V +GPFA+F G ++ +D +K +V V V +FGR TPVEL + Q+EKI Sbjct: 119 HADFDFELKETVLVQEGPFANFEGTIEEIDTDKRKVKVHVDMFGRQTPVELDFTQIEKI 177 >gi|121596189|ref|YP_988085.1| transcription antitermination protein nusG [Acidovorax sp. JS42] gi|120608269|gb|ABM44009.1| transcription antitermination protein nusG [Acidovorax sp. JS42] Length = 196 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R++R+G+ I +P+E VV ++ G++ +ERR FPG Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIARAGMQQKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P + Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFAQVEK 195 >gi|42524388|ref|NP_969768.1| transcription antitermination protein [Bdellovibrio bacteriovorus HD100] gi|39576597|emb|CAE80761.1| transcription antitermination protein [Bdellovibrio bacteriovorus HD100] Length = 177 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYIV V ++CE A ++I ++ S ++ EI IP+E VV + KG+K R+F Sbjct: 1 MEKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+ ++ + D+ +H ++++ KV GF+G + P V ++E+ + Q+ ++P Sbjct: 61 FPGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F VGE V V DGPF++F G V+ ++E+K+++ V V IFGR TPVEL Y QVEK Sbjct: 121 KVKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >gi|323465328|gb|ADX77481.1| transcription termination/antitermination factor NusG [Staphylococcus pseudintermedius ED99] Length = 182 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ + Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEK--S 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE+V ++ GPFAS G + ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|28212185|ref|NP_783129.1| transcription antitermination protein NusG [Clostridium tetani E88] gi|28204629|gb|AAO37066.1| transcription antitermination protein nusG [Clostridium tetani E88] Length = 173 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L + +I +P E V ++ G+K + ++ FPG Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLQDWIHDIRVPMEEQVEIKDGKKKIALKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIK VMTD ++ +++T V GF+G G P P+TD E+E + + V + Sbjct: 66 YVLIKMVMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDIEVESM------GISDEVIELDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+GE V V+ GP +F +++ + EK + V V +FGR TPVEL +NQ++K+ Sbjct: 120 EIGESVKVTTGPLENFPAVIQEIFPEKHKAKVLVNMFGRETPVELDFNQIQKL 172 >gi|269215893|ref|ZP_06159747.1| transcription termination/antitermination factor NusG [Slackia exigua ATCC 700122] gi|269130843|gb|EEZ61919.1| transcription termination/antitermination factor NusG [Slackia exigua ATCC 700122] Length = 181 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ +WY+V YS E K +++ R+ GL+ + +I IP+E V +++G R+V SE++ Sbjct: 1 MSKKWYVVHTYSGYENKVKQTLETRIEMYGLEDSIVDIQIPTETVTEIKEGGRRVESEKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118 P YVL++ M D+ + +++TP V GF+G PSP+T +E IM++ +A+ V Sbjct: 61 VLPSYVLVRMEMNDRNWAVVRNTPGVTGFVGPESSTPSPLTRAEFNKIMHRNDASAGVAV 120 Query: 119 SS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVG+ V V+ GP A F+GIV V E +V V V IFGR TPVEL+++QV Sbjct: 121 PKKTSTSLEVGQTVKVTSGPLAEFDGIVSEVSPEAGKVKVLVSIFGRETPVELSFDQVAS 180 Query: 176 I 176 I Sbjct: 181 I 181 >gi|323143688|ref|ZP_08078359.1| transcription termination/antitermination factor NusG [Succinatimonas hippei YIT 12066] gi|322416521|gb|EFY07184.1| transcription termination/antitermination factor NusG [Succinatimonas hippei YIT 12066] Length = 219 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S E++ +++ R+ ++H E+ +P E+V ++ G+K SER+FFPG Sbjct: 45 RWYVVQAFSGFEQRVAQTLRERIKIHNMEHDFGEVLVPKEKVKEIKDGKKRESERKFFPG 104 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVL++ MT + + +K T +V+GF+G E P P+T +E + I++++ + + P Sbjct: 105 YVLVQMRMTSETWQLVKHTDRVLGFIGGTAEKPLPITQAEADKILSRLRESEESPRPKTI 164 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V DG F F G V+ VD EK+RV V + IFGR TPVEL ++QVEK Sbjct: 165 YEVGEVVRAIDGAFKDFVGTVEKVDYEKNRVTVSIAIFGRATPVELEFSQVEK 217 >gi|308070990|ref|YP_003872595.1| Transcription antitermination protein nusG [Paenibacillus polymyxa E681] gi|310644219|ref|YP_003948978.1| nusg antitermination factor [Paenibacillus polymyxa SC2] gi|305860269|gb|ADM72057.1| Transcription antitermination protein nusG [Paenibacillus polymyxa E681] gi|309249170|gb|ADO58737.1| NusG antitermination factor [Paenibacillus polymyxa SC2] Length = 177 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V YS E K ++ R+ G++ + + +P E + + G+K R+ Sbjct: 1 MEKRWYVVHTYSGYENKVKANLEKRVESMGMEDKIFRVLVPMEEELVTKDGKKKTVMRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ V TD ++ +++TP V GF G+G P+P+ E+E I+ + +P Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVEQILKHMGMVEPKP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F+V E V + GPFA+F G V+ + EKS++ V V +FGR TP+EL Y QVEKI Sbjct: 121 --KIEFDVKESVRIKVGPFANFVGSVEEILVEKSKLKVHVNMFGRETPLELDYTQVEKI 177 >gi|319761181|ref|YP_004125118.1| transcription termination/antitermination factor nusg [Alicycliphilus denitrificans BC] gi|330823041|ref|YP_004386344.1| NusG antitermination factor [Alicycliphilus denitrificans K601] gi|317115742|gb|ADU98230.1| transcription termination/antitermination factor NusG [Alicycliphilus denitrificans BC] gi|329308413|gb|AEB82828.1| NusG antitermination factor [Alicycliphilus denitrificans K601] Length = 196 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS EK +I R+ RSG+ H I +P+E VV ++ G++ +ERR FPG Sbjct: 23 RWYIVHAYSGMEKAVERNIQERIVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPG 82 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ VM D +H +K T KV GF+G P+P+++ E++ I++Q++ +P + Sbjct: 83 YVFVEMVMDDDTWHLVKHTSKVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIE 142 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V +GPF FNG V+ V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 143 FMVGELVRVKEGPFTDFNGSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEK 195 >gi|119383494|ref|YP_914550.1| NusG antitermination factor [Paracoccus denitrificans PD1222] gi|119373261|gb|ABL68854.1| transcription antitermination protein nusG [Paracoccus denitrificans PD1222] Length = 179 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 112/177 (63%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY V V SN EKK E+I + G++ + E+ +P+E V+ +R+G+KV SERRF Sbjct: 1 MAKRWYSVSVLSNFEKKVAEAIRQAVVEKGIEDQIDEVLVPTEEVIEIRRGKKVTSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PV 118 PGYVL++ ++DK YH + +V GFLG P P+ D E+ I+++ P Sbjct: 61 MPGYVLVRMELSDKTYHLVNSINRVTGFLGAQGKPMPMRDDEVNAILHRTGEGGAEVAPR 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + F+VGE+V V+DGPF F+G+V+ VDE +R+ V V IFGR TPVEL + QV K Sbjct: 121 NLIRFDVGEKVNVTDGPFEGFSGMVEEVDEAANRIKVTVSIFGRPTPVELEFTQVAK 177 >gi|251799659|ref|YP_003014390.1| NusG antitermination factor [Paenibacillus sp. JDR-2] gi|247547285|gb|ACT04304.1| NusG antitermination factor [Paenibacillus sp. JDR-2] Length = 177 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+V Y+ E K ++ RL G++ + + +P E V + G+K +R+ Sbjct: 1 MEKRWYVVHTYAGYENKVKANLERRLESMGMEDKIFRVLVPMEEEVVEKDGKKKTVQRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 +PGYVL++ V TD ++ +++TP V GF G+G P + E+E I+ + ++ P Sbjct: 61 YPGYVLVEMVQTDDSWYVVRNTPGVTGFVGSTGSGSKPIALMPDEVEQILKHMG--MEEP 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F++ E V V GPFA F G V+ + +KS++ V V +FGR TP+EL Y QVEKI Sbjct: 119 KPKIEFDLKETVRVKVGPFADFVGTVEEILLDKSKLKVHVNMFGRETPLELDYTQVEKI 177 >gi|242372754|ref|ZP_04818328.1| transcriptional antiterminator NusG [Staphylococcus epidermidis M23864:W1] gi|242349527|gb|EES41128.1| transcriptional antiterminator NusG [Staphylococcus epidermidis M23864:W1] Length = 182 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|228475251|ref|ZP_04059976.1| transcription termination/antitermination factor NusG [Staphylococcus hominis SK119] gi|314937159|ref|ZP_07844506.1| transcription termination/antitermination factor NusG [Staphylococcus hominis subsp. hominis C80] gi|228270716|gb|EEK12125.1| transcription termination/antitermination factor NusG [Staphylococcus hominis SK119] gi|313655778|gb|EFS19523.1| transcription termination/antitermination factor NusG [Staphylococcus hominis subsp. hominis C80] Length = 182 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|289551664|ref|YP_003472568.1| Transcription antitermination protein NusG [Staphylococcus lugdunensis HKU09-01] gi|315659123|ref|ZP_07911988.1| transcription termination/antitermination factor NusG [Staphylococcus lugdunensis M23590] gi|289181195|gb|ADC88440.1| Transcription antitermination protein NusG [Staphylococcus lugdunensis HKU09-01] gi|315495847|gb|EFU84177.1| transcription termination/antitermination factor NusG [Staphylococcus lugdunensis M23590] Length = 182 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKHWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKVVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + E+GE+V + GPF++ G V+ ++ +K ++ V V +FGR TPVE+ ++QVEK+ Sbjct: 125 IDIELEIGEQVRIKSGPFSNQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQVEKL 182 >gi|148244883|ref|YP_001219577.1| transcription antitermination protein NusG [Candidatus Vesicomyosocius okutanii HA] gi|146326710|dbj|BAF61853.1| transcription antitermination protein NusG [Candidatus Vesicomyosocius okutanii HA] Length = 177 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+ S E K +I R GL+ LV E+ +P+E+VV ++ G+K +ER+F Sbjct: 1 MSKRWYVFHARSGFESKVKIAIEESTIREGLEDLVGEVLVPTEQVVELKDGQKKMAERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+L+ +T+ + +K+T VIGF+G PSP+T E++ I+ +V+ +P Sbjct: 61 FPGYMLVNMELTEPSWLLVKNTNNVIGFIGGSSGKPSPITQREVDKILMRVQEGADKPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V ++ GE + V DGPF FNG+V+ VD EK+ + VEV+IFGR T VEL ++QVEK Sbjct: 121 KVAYQPGEEILVIDGPFNEFNGLVEAVDYEKNLLKVEVLIFGRSTSVELEFSQVEK 176 >gi|225024700|ref|ZP_03713892.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC 23834] gi|224942526|gb|EEG23735.1| hypothetical protein EIKCOROL_01586 [Eikenella corrodens ATCC 23834] Length = 180 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 122/180 (67%), Gaps = 4/180 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++Q YS EK +++ R++R G++ L +I +P E VV ++ GRK SER+F Sbjct: 1 MAKNWYVIQAYSGFEKNVQKTLKERIAREGMEGLFGQILVPVEEVVGIKNGRKTVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQV---EAAVQR 116 FPGYVLI+ MTD+ +H +K TP+V GF+G P P++ E++ I++QV + ++ Sbjct: 61 FPGYVLIEMEMTDESWHLVKSTPRVNGFIGGTANRPLPISQREVDAIISQVLAVAGSEKK 120 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 P V F VG+++ VS+GPF+ FNG+V VD E++++ V V IFGR TPVEL ++QVEKI Sbjct: 121 PKPRVEFMVGQQIRVSEGPFSDFNGLVDVVDYERNKLRVLVQIFGRETPVELDFSQVEKI 180 >gi|27467217|ref|NP_763854.1| transcription antitermination protein [Staphylococcus epidermidis ATCC 12228] gi|57866121|ref|YP_187773.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis RP62A] gi|242241868|ref|ZP_04796313.1| transcriptional antiterminator NusG [Staphylococcus epidermidis W23144] gi|251809953|ref|ZP_04824426.1| transcriptional antiterminator NusG [Staphylococcus epidermidis BCM-HMP0060] gi|282875013|ref|ZP_06283888.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis SK135] gi|293367912|ref|ZP_06614550.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis M23864:W2(grey)] gi|38604831|sp|Q8CQ85|NUSG_STAES RecName: Full=Transcription antitermination protein nusG gi|81675390|sp|Q5HRL6|NUSG_STAEQ RecName: Full=Transcription antitermination protein nusG gi|27314759|gb|AAO03896.1|AE016744_299 transcription antitermination protein [Staphylococcus epidermidis ATCC 12228] gi|57636779|gb|AAW53567.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis RP62A] gi|242234646|gb|EES36958.1| transcriptional antiterminator NusG [Staphylococcus epidermidis W23144] gi|251806496|gb|EES59153.1| transcriptional antiterminator NusG [Staphylococcus epidermidis BCM-HMP0060] gi|281296341|gb|EFA88860.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis SK135] gi|291317941|gb|EFE58349.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis M23864:W2(grey)] gi|329729454|gb|EGG65857.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis VCU144] gi|329734659|gb|EGG70966.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis VCU028] gi|329738062|gb|EGG74283.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis VCU045] Length = 182 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|251772654|gb|EES53218.1| transcription antitermination protein (NusG) [Leptospirillum ferrodiazotrophum] Length = 177 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 102/174 (58%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W+++ Y+ E K ++ G R G++ + + +P++ V ++G+K S R+ F Sbjct: 3 EKSWFVLHTYAGFENKVKTALEGLRERGGIEDGIGIVLVPTQNVTEFKEGKKKVSTRKVF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI+ T++V+H +K PKV GFLG P P+T +E+ + +++E P +S Sbjct: 63 PGYVLIEMEPTEEVFHYVKSVPKVTGFLGNKGKPQPMTATEVNELFHRIEEGTAMPAASE 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ + ++DGPF F G + VD E +V V V IFGR TPVEL + Q+E+ Sbjct: 123 QYFEGDSIRITDGPFQGFTGAISGVDSEHGKVRVLVSIFGRQTPVELDFLQIER 176 >gi|51894226|ref|YP_076917.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM 14863] gi|51857915|dbj|BAD42073.1| transcriptional antiterminator [Symbiobacterium thermophilum IAM 14863] Length = 176 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 101/175 (57%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K ++ R+ + + + +P E + ++ G++ +R+ F Sbjct: 3 EKHWYVVHTYSGYENKVKTNLEKRVESMEMQEKIFRVLVPMEDEIEIKDGKQKKVKRKVF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ VM+D ++ +++TP V GF+G+G P P+T E+E I+ + + V Sbjct: 63 PGYVLVEMVMSDDSWYVVRNTPGVTGFVGSGNKPIPLTPEEVEAILGRHGE-DKPAHVVV 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEV + V V GPF G++K + EK + V+V +FGR TPVE+ ++Q+E+I Sbjct: 122 DFEVDQPVRVIAGPFKDHTGVIKEIFPEKGKARVQVTMFGRETPVEVDFSQIEEI 176 >gi|319399715|gb|EFV87964.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis FRI909] Length = 182 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIQSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|114567855|ref|YP_755009.1| NusG antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338790|gb|ABI69638.1| transcription antitermination protein nusG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 203 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 1/172 (0%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K + R+ + + E+ IP E+ V + G++ + +R FPGY Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V++ +M D ++ ++ TP V GF+G+G P P+ EI+ I Q+ ++ + E Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQMGLM-EKKTMIIDIE 151 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +GE + V GPFA+F G+V+ + EK ++ V + +FGR TPVEL Y Q+EKI Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203 >gi|149186890|ref|ZP_01865199.1| transcription antiterminator [Erythrobacter sp. SD-21] gi|148829399|gb|EDL47841.1| transcription antiterminator [Erythrobacter sp. SD-21] Length = 178 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K +SI R GL V E+ +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVRDSIIAEAERLGLSEGVEEVQVPTETVTEVKRGKKVQIERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118 PGYVL K MTD VYH +K+TPKV GFLG P ++D E VE A P Sbjct: 60 MPGYVLAKLNMTDDVYHLVKNTPKVTGFLGNNNKPQAISDKEAARYFGGVEEAKSAPKKQ 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SV +E+G++V V DGPFASFNG+V+ +D +K +V V V IFGR TPVEL + QVE + Sbjct: 120 VSVDYEIGDQVKVLDGPFASFNGLVEELDFDKQKVKVSVSIFGRATPVELEFEQVELV 177 >gi|239636935|ref|ZP_04677933.1| transcription termination/antitermination factor NusG [Staphylococcus warneri L37603] gi|239597483|gb|EEQ79982.1| transcription termination/antitermination factor NusG [Staphylococcus warneri L37603] gi|330686237|gb|EGG97849.1| transcription termination/antitermination factor NusG [Staphylococcus epidermidis VCU121] Length = 182 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ EK ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|71083815|ref|YP_266535.1| transcription antitermination protein NusG [Candidatus Pelagibacter ubique HTCC1062] gi|91763149|ref|ZP_01265113.1| transcription antitermination protein NusG [Candidatus Pelagibacter ubique HTCC1002] gi|71062928|gb|AAZ21931.1| transcription antitermination protein NusG [Candidatus Pelagibacter ubique HTCC1062] gi|91717562|gb|EAS84213.1| transcription antitermination protein NusG [Candidatus Pelagibacter ubique HTCC1002] Length = 176 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 81/173 (46%), Positives = 119/173 (68%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYIVQ +SN E K I ++ + + EI +P+ V V++G+++ ++++FP Sbjct: 2 KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S + Sbjct: 62 GYVLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + +GE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK Sbjct: 122 YSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174 >gi|126433559|ref|YP_001069250.1| transcription antitermination protein NusG [Mycobacterium sp. JLS] gi|126233359|gb|ABN96759.1| transcription antitermination protein nusG [Mycobacterium sp. JLS] Length = 271 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 81 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 140 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 141 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKAASTAA 200 Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP Sbjct: 201 GAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 260 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 261 VELTFNQVSKI 271 >gi|42518504|ref|NP_964434.1| transcription antitermination protein NusG [Lactobacillus johnsonii NCC 533] gi|227888784|ref|ZP_04006589.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC 33200] gi|268318923|ref|YP_003292579.1| Transcription antitermination protein nusG [Lactobacillus johnsonii FI9785] gi|41582789|gb|AAS08400.1| transcription antitermination protein NusG [Lactobacillus johnsonii NCC 533] gi|227850621|gb|EEJ60707.1| transcriptional antiterminator NusG [Lactobacillus johnsonii ATCC 33200] gi|262397298|emb|CAX66312.1| Transcription antitermination protein nusG [Lactobacillus johnsonii FI9785] gi|329666774|gb|AEB92722.1| transcription antitermination protein [Lactobacillus johnsonii DPC 6026] Length = 183 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+ G G PSP+ D EIE I+ + P Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDDEIERILASQGQPAKEP- 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV+ Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179 >gi|319891500|ref|YP_004148375.1| Transcription antitermination protein NusG [Staphylococcus pseudintermedius HKU10-03] gi|317161196|gb|ADV04739.1| Transcription antitermination protein NusG [Staphylococcus pseudintermedius HKU10-03] Length = 182 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQMKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ + Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPDEVRFILKQMGMNEK--S 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE+V ++ GPFAS G + +++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVEVELGEQVRITSGPFASQVGEIHDIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|257784977|ref|YP_003180194.1| NusG antitermination factor [Atopobium parvulum DSM 20469] gi|257473484|gb|ACV51603.1| NusG antitermination factor [Atopobium parvulum DSM 20469] Length = 181 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 4/180 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M RWY+V YS E K + R+ GL+ V +I IP+E V V+ G ++ E + Sbjct: 1 MAKRWYVVHTYSGYENKVKTDLEHRIETYGLERAVVDIQIPTEEVTEVKDGGKRETKESK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D + +++TP V GF+G P P+ E + IM + PV Sbjct: 61 VFPGYVLVRMELDDNTWAVVRNTPGVTGFVGIDGKPVPLRRDEFDKIMRRGGMKTGSPVP 120 Query: 120 S---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ + V GP A F+G V V+ E ++ V + IFGR TPVEL +Q+ I Sbjct: 121 KRTATNIEVGQAIHVLSGPLADFDGTVSEVNAESGKIKVMLTIFGRETPVELTMDQISLI 180 >gi|308235430|ref|ZP_07666167.1| transcription antiterminator [Gardnerella vaginalis ATCC 14018] gi|311114211|ref|YP_003985432.1| transcription termination/antitermination factor NusG [Gardnerella vaginalis ATCC 14019] gi|310945705|gb|ADP38409.1| transcription termination/antitermination factor NusG [Gardnerella vaginalis ATCC 14019] Length = 284 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 12/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG Sbjct: 99 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTDKGKKVITRVRVPG 158 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 YVLI+ + +++T V GF+G + P+P++ E+ +M + A+ Sbjct: 159 YVLIRMWPDENARRIVRETEGVTGFVGPSKEPAPLSRKEVIDMMAPMIASEALKKAGDKP 218 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V ++VG++V V+DGPFA+ +V +VD ++ V V IFGR TPVEL +N Sbjct: 219 AAARKRTVEVAYKVGDQVTVTDGPFATMAAVVSDVDPTTQKLTVLVSIFGRETPVELGFN 278 Query: 172 QVEKIV 177 QVE IV Sbjct: 279 QVEPIV 284 >gi|291303407|ref|YP_003514685.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290572627|gb|ADD45592.1| NusG antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 269 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 20/192 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E + ++ GR++ ++ + +I +P++ V V+ G++ + + FP Y Sbjct: 78 WYVVHSYAGFENRVKSNLEGRIASFDMEDYIYQIEVPTQMQVEVKNGKRSRVQAKVFPSY 137 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T + Y +++TP V GF+G + +E ++ + AV Sbjct: 138 VLVRMELTPESYSVVRNTPGVTGFVGATNQTDRPSPLTLEDVLKWLAPAVAPEEPAATGS 197 Query: 115 ----------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 +P + F VG+ V V+DG FAS + ++ ++ ++ V V IFGR T Sbjct: 198 GESSGEGGATAKPEIKLDFAVGDSVTVTDGAFASLPATISEINADQQKLKVLVSIFGRET 257 Query: 165 PVELAYNQVEKI 176 PVEL +NQV I Sbjct: 258 PVELNFNQVSTI 269 >gi|227552592|ref|ZP_03982641.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330] gi|257880337|ref|ZP_05659990.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933] gi|257882191|ref|ZP_05661844.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502] gi|257885384|ref|ZP_05665037.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501] gi|257888179|ref|ZP_05667832.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733] gi|257890996|ref|ZP_05670649.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410] gi|257894250|ref|ZP_05673903.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408] gi|257896930|ref|ZP_05676583.1| transcription antiterminator NusG [Enterococcus faecium Com12] gi|257899609|ref|ZP_05679262.1| transcription antiterminator NusG [Enterococcus faecium Com15] gi|258614712|ref|ZP_05712482.1| transcription antitermination protein NusG [Enterococcus faecium DO] gi|260562359|ref|ZP_05832873.1| transcription antitermination protein NusG [Enterococcus faecium C68] gi|261209266|ref|ZP_05923658.1| transcription antitermination protein NusG [Enterococcus faecium TC 6] gi|293379127|ref|ZP_06625278.1| transcription termination/antitermination factor NusG [Enterococcus faecium PC4.1] gi|293557114|ref|ZP_06675669.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1039] gi|293559848|ref|ZP_06676362.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1162] gi|293568368|ref|ZP_06679689.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1071] gi|293571552|ref|ZP_06682574.1| transcription termination/antitermination factor NusG [Enterococcus faecium E980] gi|294616181|ref|ZP_06695978.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1636] gi|294618923|ref|ZP_06698430.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1679] gi|294623149|ref|ZP_06702035.1| transcription termination/antitermination factor NusG [Enterococcus faecium U0317] gi|314937977|ref|ZP_07845288.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133a04] gi|314944027|ref|ZP_07850712.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133C] gi|314948417|ref|ZP_07851805.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0082] gi|314951395|ref|ZP_07854447.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133A] gi|314991324|ref|ZP_07856803.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133B] gi|314995338|ref|ZP_07860444.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133a01] gi|227178218|gb|EEI59190.1| transcriptional antiterminator NusG [Enterococcus faecium TX1330] gi|257814565|gb|EEV43323.1| transcription antiterminator NusG [Enterococcus faecium 1,230,933] gi|257817849|gb|EEV45177.1| transcription antiterminator NusG [Enterococcus faecium 1,231,502] gi|257821240|gb|EEV48370.1| transcription antiterminator NusG [Enterococcus faecium 1,231,501] gi|257824233|gb|EEV51165.1| transcription antiterminator NusG [Enterococcus faecium 1,141,733] gi|257827356|gb|EEV53982.1| transcription antiterminator NusG [Enterococcus faecium 1,231,410] gi|257830629|gb|EEV57236.1| transcription antiterminator NusG [Enterococcus faecium 1,231,408] gi|257833495|gb|EEV59916.1| transcription antiterminator NusG [Enterococcus faecium Com12] gi|257837521|gb|EEV62595.1| transcription antiterminator NusG [Enterococcus faecium Com15] gi|260073283|gb|EEW61624.1| transcription antitermination protein NusG [Enterococcus faecium C68] gi|260076812|gb|EEW64547.1| transcription antitermination protein NusG [Enterococcus faecium TC 6] gi|291588889|gb|EFF20716.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1071] gi|291590936|gb|EFF22648.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1636] gi|291594839|gb|EFF26209.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1679] gi|291597518|gb|EFF28683.1| transcription termination/antitermination factor NusG [Enterococcus faecium U0317] gi|291600735|gb|EFF31032.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1039] gi|291606184|gb|EFF35604.1| transcription termination/antitermination factor NusG [Enterococcus faecium E1162] gi|291608358|gb|EFF37658.1| transcription termination/antitermination factor NusG [Enterococcus faecium E980] gi|292642268|gb|EFF60427.1| transcription termination/antitermination factor NusG [Enterococcus faecium PC4.1] gi|313590431|gb|EFR69276.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133a01] gi|313594097|gb|EFR72942.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133B] gi|313596453|gb|EFR75298.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133A] gi|313597372|gb|EFR76217.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133C] gi|313642652|gb|EFS07232.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0133a04] gi|313645142|gb|EFS09722.1| transcription termination/antitermination factor NusG [Enterococcus faecium TX0082] Length = 181 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R + + + +P E+ V+ G++ + F Sbjct: 5 EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ Sbjct: 65 PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V EVGE V + +G FA G V VD EK ++ V + +FGR T EL ++QV+KI Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 180 >gi|303247802|ref|ZP_07334071.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ] gi|302490886|gb|EFL50785.1| NusG antitermination factor [Desulfovibrio fructosovorans JJ] Length = 187 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 68/172 (39%), Positives = 106/172 (61%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+PG Sbjct: 15 RWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKRTSTRKFYPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P F Sbjct: 75 YVMVKMSMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYHF 134 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 135 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >gi|70727472|ref|YP_254388.1| transcription antitermination protein [Staphylococcus haemolyticus JCSC1435] gi|68448198|dbj|BAE05782.1| transcription antitermination protein [Staphylococcus haemolyticus JCSC1435] Length = 182 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY V YS E K +++ R+ + + + IP E V+ G+ ++ F Sbjct: 7 AKCWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKQLKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ E+ I+ Q+ ++ Sbjct: 67 PGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQMG--LKEKT 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VGE+V + GPFA+ G V+ ++ +K ++ V V +FGR TPVE+ ++Q+EK+ Sbjct: 125 IDVELDVGEQVRIKSGPFANQVGEVQEIEPDKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >gi|323705648|ref|ZP_08117222.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535125|gb|EGB24902.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 176 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E K ++ + L +L+ ++ +P+E+VV ++ G+K + +R+ F Sbjct: 7 SAKWYVVHTYSGYENKVKANLEKSVENRNLQNLIHQVVVPTEKVVEIKDGKKKSVDRKVF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K VM D+ ++ +++T V GF+G G P P+T++E+ + ++ +SV Sbjct: 67 PGYVLVKMVMNDESWYVVRNTRGVTGFVGPGSKPVPLTEAEVRSL------GIKEIQTSV 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V GP +F G+V+ + ++ + V + +FGR TPVE + Q++KI Sbjct: 121 DIKVGDSVRVIAGPLENFIGVVEEIYLDRQKAKVLISMFGRETPVEFDFVQIQKI 175 >gi|297625760|ref|YP_003687523.1| Transcription antitermination protein NusG [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921525|emb|CBL56079.1| Transcription antitermination protein NusG [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 295 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 12/185 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E + ++I R+ ++ + E +P+E V +RKG++ R F PGY Sbjct: 110 WYVVHTYSGMENRVKQNIDNRVKSLNMEDYIYETVVPTEDAVEMRKGQRKKVTRVFMPGY 169 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112 VL++ MTD+ + T++ TP V GF+G G+ P+P+ SE+EH++ Sbjct: 170 VLVRMEMTDESWSTVRHTPSVTGFVGQGQTPAPLDLSEVEHMLTPSVTAQVVASGEAKAG 229 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 A Q V V + VG++V V DGPFA + + ++ R+ +V I GR TPV+L + Q Sbjct: 230 ADQEKVEVVDYAVGDQVMVIDGPFAGVHATITEINTHNQRLKADVEILGRETPVDLTFPQ 289 Query: 173 VEKIV 177 ++K++ Sbjct: 290 IQKVI 294 >gi|326203307|ref|ZP_08193172.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325986565|gb|EGD47396.1| NusG antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG Sbjct: 13 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 72 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V + Sbjct: 73 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDDEVKAM------GVEEFAPEVDY 126 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI Sbjct: 127 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 179 >gi|20808673|ref|NP_623844.1| transcription antitermination protein NusG [Thermoanaerobacter tengcongensis MB4] gi|20517309|gb|AAM25448.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4] Length = 174 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY+V YS E K ++ + L + +I +P+E+V ++ G+K ER+ F Sbjct: 6 TAKWYVVHTYSGYENKVKANLEKIIENRNLQDKILQIVVPTEKVTEIKDGKKKVVERKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +MTD+ ++ +++T V GF+G G P P+TD+E+ + ++ ++V Sbjct: 66 PGYVLVKMIMTDETWYVVRNTRGVTGFVGPGSKPVPLTDAEVRAL------GIKDVSTAV 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + V V GPF +F G+V+ V E+ + V + +FGR TPVE Q++KI Sbjct: 120 DLNVKDTVRVVSGPFENFIGVVQEVYPERQKAKVLISMFGRETPVEFDLVQLQKI 174 >gi|284034041|ref|YP_003383972.1| NusG antitermination factor [Kribbella flavida DSM 17836] gi|283813334|gb|ADB35173.1| NusG antitermination factor [Kribbella flavida DSM 17836] Length = 400 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E + ++ R++ ++ + EI +P+E V ++ G++ +R PGY Sbjct: 212 WYVVHTYSGMENRVKGNLENRINSLNMEDYIFEIVVPTEEVAEIKNGQRRMVKRTVLPGY 271 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +TD+ + T++ TP V GF+G + P P++ E+E ++ A Sbjct: 272 VLVRMDLTDESWSTVRHTPSVTGFVGNSQKPVPLSLEEVEKMLAPAVVAAAEAAAAETGA 331 Query: 114 ------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 ++ V F VG+ V V DGPFA+ + + ++ + R+ V IFGR TPVE Sbjct: 332 APTKTAAKKKVEVADFGVGDSVMVVDGPFATLHATITEINADAQRIKALVEIFGRETPVE 391 Query: 168 LAYNQVEKI 176 L+++Q++K+ Sbjct: 392 LSFSQIQKV 400 >gi|317153969|ref|YP_004122017.1| transcription termination/antitermination factor NusG [Desulfovibrio aespoeensis Aspo-2] gi|316944220|gb|ADU63271.1| transcription termination/antitermination factor NusG [Desulfovibrio aespoeensis Aspo-2] Length = 185 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 112/172 (65%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E++ +++ + L+ E+ +P+E+VV + KG + S R+F+PG Sbjct: 13 RWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKVVEMVKGERKTSTRKFYPG 72 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y++IK +TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P F Sbjct: 73 YIMIKMTLTDDTWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFNF 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K Sbjct: 133 ERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 184 >gi|268316663|ref|YP_003290382.1| NusG antitermination factor [Rhodothermus marinus DSM 4252] gi|262334197|gb|ACY47994.1| NusG antitermination factor [Rhodothermus marinus DSM 4252] Length = 186 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 110/173 (63%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ +S EKK + + + R GL V +I IP+E V +R G+K ER FFPG Sbjct: 12 KWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFFPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 Y+LI+AV+ ++ H I + P V+GFLG+G+ P+P+ E+ I+ +V+ A + + Sbjct: 72 YILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPEIP 131 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ G+ V + +GPF +F G+V+ V +K ++ V V IFGR TP+E+ Y QVE+ Sbjct: 132 FKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184 >gi|118467542|ref|YP_885732.1| transcription antitermination protein NusG [Mycobacterium smegmatis str. MC2 155] gi|118168829|gb|ABK69725.1| transcription antitermination protein NusG [Mycobacterium smegmatis str. MC2 155] Length = 280 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 90 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 149 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 150 ILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQGAAKKPGKAAAAAA 209 Query: 108 --NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 EA ++RP V FEVGE V V DGPFA+ + V+ E+ ++ V V IFGR TP Sbjct: 210 SAASTEATLERPEILVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETP 269 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 270 VELTFNQVAKI 280 >gi|284042786|ref|YP_003393126.1| NusG antitermination factor [Conexibacter woesei DSM 14684] gi|283947007|gb|ADB49751.1| NusG antitermination factor [Conexibacter woesei DSM 14684] Length = 173 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 2/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ R+ V ++ +P+E V ++ ++V +E+R PG Sbjct: 3 RWYVVNTYSGHENKVKHNLEHRVVSLNQRRAVRQVVVPTESVTEMKDNQRVVTEKRTMPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+ + + + +K TP V GF+G P P+T +E++ ++++ +RP S F Sbjct: 63 YVLVNMDLNEDSWALVKGTPGVTGFVGASNEPVPLTQAEVDRLLHR--ETAERPRSRAQF 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +GE V V GP + F+G + ++E+ +R+ V V IFGR TPVE+ ++QV+KI Sbjct: 121 SIGESVKVVSGPLSDFSGEISEINEDGARLKVLVSIFGRETPVEVGFDQVKKI 173 >gi|255527829|ref|ZP_05394678.1| NusG antitermination factor [Clostridium carboxidivorans P7] gi|296187253|ref|ZP_06855649.1| transcription termination/antitermination factor NusG [Clostridium carboxidivorans P7] gi|255508470|gb|EET84861.1| NusG antitermination factor [Clostridium carboxidivorans P7] gi|296048124|gb|EFG87562.1| transcription termination/antitermination factor NusG [Clostridium carboxidivorans P7] Length = 173 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L + ++ +P E V V+ G++ + ++ FPG Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLYDWIDDVQVPMEEQVEVKDGKRKVTLKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI VMTD ++ +++T V GF+G G P +TD E+ V + +V Sbjct: 66 YVLIHMVMTDDSWYVVRNTRGVTGFVGPGSKPVALTDEEV------VSMGIAEKAVNVDV 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE + V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EK+ Sbjct: 120 EVGESIKVKSGPLENFPAVIQEINTEKKKIKALVNMFGRETPVELDFNQIEKL 172 >gi|160934068|ref|ZP_02081455.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753] gi|156866741|gb|EDO60113.1| hypothetical protein CLOLEP_02931 [Clostridium leptum DSM 753] Length = 173 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 6/173 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K ++ + L L+ E+ +P+E V V+ + ER+ + Sbjct: 4 EAKWYVVHTYSGYENKVASNLEKTVENRQLQDLIQEVRVPTEMVTEVKDNKTRQVERKIY 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K V+TD+ ++ +++ GF+G P P+TD E+ + V+ V Sbjct: 64 PSYVLVKMVLTDESWYVVRNIRGCTGFVGPSSKPIPLTDEEVARM------GVEVRQVEV 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +EVG+ V + DGP F G V+ ++ EK+ V V V +FGR TPVEL +QVE Sbjct: 118 SYEVGDSVRIVDGPLDGFVGTVEEMNTEKNSVRVTVSMFGRETPVELELDQVE 170 >gi|269103670|ref|ZP_06156367.1| transcription antitermination protein NusG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163568|gb|EEZ42064.1| transcription antitermination protein NusG [Photobacterium damselae subsp. damselae CIP 102761] Length = 170 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 Q +S E + +S+ + G++ E+ +P+E VV VR G++ SER+FFPGYVL++ Sbjct: 2 QAFSGFEGRVAQSLREHIKMHGMEEYFEEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQ 61 Query: 69 AVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 VM D+ +H ++ P+V+GF+G + P+P++D E + I+N+++ A + PV FE GE Sbjct: 62 MVMNDETWHLVRSIPRVMGFIGGTSDRPAPISDKEADAILNRLQKASESPVHKTVFEPGE 121 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V V+DGPFA FNG+V+ VD +KSRV V V IFGR TPVEL + QVEK Sbjct: 122 VVRVTDGPFADFNGVVEEVDYDKSRVKVSVSIFGRATPVELEFGQVEK 169 >gi|87198854|ref|YP_496111.1| transcription antitermination protein nusG [Novosphingobium aromaticivorans DSM 12444] gi|87134535|gb|ABD25277.1| transcription antitermination protein nusG [Novosphingobium aromaticivorans DSM 12444] Length = 178 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K ++I R GL LV + +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVRDAIIAEAERIGLSQLVEAVEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119 PGYVL K M D +YH +K+TPKV GFLGT P P++D E E A P Sbjct: 60 MPGYVLAKLAMNDDIYHLVKNTPKVTGFLGTNGKPQPISDKEAARYFGAREQAAAEPRKN 119 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SV +E+G+ V V+ GPFASFNG+V+ +D +KSRV V V IFGR TPVEL + +VE + Sbjct: 120 VSVDYEIGDSVKVNAGPFASFNGVVEELDFDKSRVKVSVSIFGRATPVELGFEEVELV 177 >gi|309812402|ref|ZP_07706157.1| transcription termination/antitermination factor NusG [Dermacoccus sp. Ellin185] gi|308433707|gb|EFP57584.1| transcription termination/antitermination factor NusG [Dermacoccus sp. Ellin185] Length = 277 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 14/186 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R++ ++ + +I +P E ++ G+K + R PGY Sbjct: 92 WYVIHSYAGYEKRVKTNLEQRITSLNMEDYIFQIEVPMEDYTEIKNGQKKSGTRVRIPGY 151 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112 VL++ +TD+ + ++ TP V GF+G P P++ E+ ++N Sbjct: 152 VLVRMDLTDESWGAVRHTPGVTGFVGNAHQPYPLSIDEVVTMLNPTFEEPEASAEGAAAS 211 Query: 113 --AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + V F VGE V V +GPF + + ++ + ++ V V IFGR TPVEL + Sbjct: 212 SGSASSASADVDFTVGESVTVMEGPFETLPATISEINADTQKIKVLVSIFGRETPVELGF 271 Query: 171 NQVEKI 176 NQV KI Sbjct: 272 NQVAKI 277 >gi|29377206|ref|NP_816360.1| transcription antitermination protein NusG [Enterococcus faecalis V583] gi|227554214|ref|ZP_03984261.1| transcription antitermination protein NusG [Enterococcus faecalis HH22] gi|229544889|ref|ZP_04433614.1| transcription antitermination protein NusG [Enterococcus faecalis TX1322] gi|229549155|ref|ZP_04437880.1| transcription antitermination protein NusG [Enterococcus faecalis ATCC 29200] gi|256854027|ref|ZP_05559392.1| transcription antitermination protein NusG [Enterococcus faecalis T8] gi|293384585|ref|ZP_06630451.1| transcription termination/antitermination factor NusG [Enterococcus faecalis R712] gi|293386814|ref|ZP_06631385.1| transcription termination/antitermination factor NusG [Enterococcus faecalis S613] gi|294779909|ref|ZP_06745291.1| transcription termination/antitermination factor NusG [Enterococcus faecalis PC1.1] gi|300860945|ref|ZP_07107032.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TUSoD Ef11] gi|307269242|ref|ZP_07550596.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX4248] gi|307271780|ref|ZP_07553051.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0855] gi|307276965|ref|ZP_07558075.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX2134] gi|307278724|ref|ZP_07559791.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0860] gi|307288652|ref|ZP_07568633.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0109] gi|307290267|ref|ZP_07570183.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0411] gi|312900090|ref|ZP_07759406.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0470] gi|312902553|ref|ZP_07761759.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0635] gi|312906411|ref|ZP_07765419.1| transcription termination/antitermination factor NusG [Enterococcus faecalis DAPTO 512] gi|312951903|ref|ZP_07770791.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0102] gi|312979430|ref|ZP_07791118.1| transcription termination/antitermination factor NusG [Enterococcus faecalis DAPTO 516] gi|29344672|gb|AAO82430.1| transcription antitermination protein NusG [Enterococcus faecalis V583] gi|227176661|gb|EEI57633.1| transcription antitermination protein NusG [Enterococcus faecalis HH22] gi|229305709|gb|EEN71705.1| transcription antitermination protein NusG [Enterococcus faecalis ATCC 29200] gi|229309990|gb|EEN75977.1| transcription antitermination protein NusG [Enterococcus faecalis TX1322] gi|256710970|gb|EEU26013.1| transcription antitermination protein NusG [Enterococcus faecalis T8] gi|291078131|gb|EFE15495.1| transcription termination/antitermination factor NusG [Enterococcus faecalis R712] gi|291083817|gb|EFE20780.1| transcription termination/antitermination factor NusG [Enterococcus faecalis S613] gi|294453021|gb|EFG21441.1| transcription termination/antitermination factor NusG [Enterococcus faecalis PC1.1] gi|295113671|emb|CBL32308.1| transcription antitermination protein nusG [Enterococcus sp. 7L76] gi|300849984|gb|EFK77734.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TUSoD Ef11] gi|306498688|gb|EFM68189.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0411] gi|306500406|gb|EFM69742.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0109] gi|306504585|gb|EFM73788.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0860] gi|306506388|gb|EFM75548.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX2134] gi|306511658|gb|EFM80657.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0855] gi|306514461|gb|EFM83022.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX4248] gi|310627565|gb|EFQ10848.1| transcription termination/antitermination factor NusG [Enterococcus faecalis DAPTO 512] gi|310630092|gb|EFQ13375.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0102] gi|310634223|gb|EFQ17506.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0635] gi|311287801|gb|EFQ66357.1| transcription termination/antitermination factor NusG [Enterococcus faecalis DAPTO 516] gi|311292725|gb|EFQ71281.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0470] gi|315025505|gb|EFT37437.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX2137] gi|315030451|gb|EFT42383.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX4000] gi|315032577|gb|EFT44509.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0017] gi|315035100|gb|EFT47032.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0027] gi|315143881|gb|EFT87897.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX2141] gi|315148690|gb|EFT92706.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX4244] gi|315151764|gb|EFT95780.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0012] gi|315154307|gb|EFT98323.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0031] gi|315155591|gb|EFT99607.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0043] gi|315159600|gb|EFU03617.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0312] gi|315162108|gb|EFU06125.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0645] gi|315165297|gb|EFU09314.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX1302] gi|315168710|gb|EFU12727.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX1341] gi|315170473|gb|EFU14490.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX1342] gi|315174937|gb|EFU18954.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX1346] gi|315573767|gb|EFU85958.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0309B] gi|315579638|gb|EFU91829.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0630] gi|315580281|gb|EFU92472.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX0309A] gi|323481651|gb|ADX81090.1| transcription termination/antitermination factor NusG [Enterococcus faecalis 62] gi|327535945|gb|AEA94779.1| transcription termination/antitermination factor NusG [Enterococcus faecalis OG1RF] gi|329578047|gb|EGG59461.1| transcription termination/antitermination factor NusG [Enterococcus faecalis TX1467] Length = 181 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R G+ + + +P E V+ G++ + F Sbjct: 5 ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ Sbjct: 65 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I Sbjct: 125 LEVAL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180 >gi|15839227|ref|NP_299915.1| transcription antitermination protein NusG [Xylella fastidiosa 9a5c] gi|71275252|ref|ZP_00651539.1| transcription antitermination protein NusG [Xylella fastidiosa Dixon] gi|71899980|ref|ZP_00682126.1| transcription antitermination protein NusG [Xylella fastidiosa Ann-1] gi|170731251|ref|YP_001776684.1| transcription antitermination protein NusG [Xylella fastidiosa M12] gi|18203340|sp|Q9PA81|NUSG_XYLFA RecName: Full=Transcription antitermination protein nusG gi|9107869|gb|AAF85435.1|AE004071_3 transcription antitermination factor [Xylella fastidiosa 9a5c] gi|71164061|gb|EAO13776.1| transcription antitermination protein NusG [Xylella fastidiosa Dixon] gi|71730267|gb|EAO32352.1| transcription antitermination protein NusG [Xylella fastidiosa Ann-1] gi|167966044|gb|ACA13054.1| transcription antitermination factor [Xylella fastidiosa M12] Length = 185 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 115/183 (62%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVLI+ + ++ +H +K+TPKV+GF+G + P P++ E + I+ +V+ Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADAILRRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQ 181 Query: 173 VEK 175 V+K Sbjct: 182 VQK 184 >gi|331701823|ref|YP_004398782.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329129166|gb|AEB73719.1| NusG antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 182 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ R G+ + +P + V+ G+ + F Sbjct: 6 EKQWYVLHTYSGYENKVKMNLDSRKESMGMQDYIFRTVVPEQEEHEVKNGKDKVKMDKTF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + + Sbjct: 66 PGYVLVEMIMTDQAWYIVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHED 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V +G+ V + DG F +G V VD EK R+ V + +FGR T +L +NQ+ Sbjct: 126 LDVN--IGDTVKIVDGAFTGLDGKVTEVDNEKQRLKVNIEMFGRETSTDLDFNQI 178 >gi|282852730|ref|ZP_06262072.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri 224-1] gi|282556472|gb|EFB62092.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri 224-1] Length = 183 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETIRGKKQEVDEKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+ G G PSP+ D EIE I+ + P Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV+ Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179 >gi|28377493|ref|NP_784385.1| transcription antitermination protein NusG [Lactobacillus plantarum WCFS1] gi|254555723|ref|YP_003062140.1| transcription antitermination protein NusG [Lactobacillus plantarum JDM1] gi|28270325|emb|CAD63226.1| transcription antitermination protein NusG [Lactobacillus plantarum WCFS1] gi|254044650|gb|ACT61443.1| transcription antitermination protein NusG [Lactobacillus plantarum JDM1] Length = 182 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSA--RH 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181 >gi|308179704|ref|YP_003923832.1| transcription antitermination protein NusG [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045195|gb|ADN97738.1| transcription antitermination protein NusG [Lactobacillus plantarum subsp. plantarum ST-III] Length = 182 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEETEQILHQLGMSA--RH 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I Sbjct: 124 TELDVEVGEQVTIIDGAFSGLSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181 >gi|283851491|ref|ZP_06368771.1| NusG antitermination factor [Desulfovibrio sp. FW1012B] gi|283573025|gb|EFC21005.1| NusG antitermination factor [Desulfovibrio sp. FW1012B] Length = 192 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 68/172 (39%), Positives = 106/172 (61%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E + ++I + + E+ +P+E+V+ + KG K S R+F+PG Sbjct: 20 RWYIVHTYSGFENRVEQTIREMMRTGQDGGSIEEVVVPTEKVIELVKGEKKTSTRKFYPG 79 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P F Sbjct: 80 YVMVKMAMNDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEADKILSLMVSRQEQPRPKYHF 139 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 140 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 191 >gi|227519486|ref|ZP_03949535.1| transcription antitermination protein NusG [Enterococcus faecalis TX0104] gi|227073098|gb|EEI11061.1| transcription antitermination protein NusG [Enterococcus faecalis TX0104] Length = 181 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R G+ + + +P E V+ G++ + F Sbjct: 5 ERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ Sbjct: 65 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I Sbjct: 125 LEVTL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 180 >gi|218886545|ref|YP_002435866.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757499|gb|ACL08398.1| NusG antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 184 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 109/172 (63%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW+IV YS E++ ++I + L+ E+ +P+E+V+ + KG K S R+F+PG Sbjct: 12 RWFIVHTYSGFEQRVEQTIREMIRTGQAQGLIEEVVVPTEKVIELVKGEKRTSTRKFYPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K MTD +H ++ PKV GF+G P+P+ DSE E I+ +E+ ++P F Sbjct: 72 YVMVKMAMTDFSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILTMMESRQEQPRPKFNF 131 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 132 ERGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 183 >gi|297170766|gb|ADI21788.1| transcription antiterminator [uncultured gamma proteobacterium HF0130_22O14] Length = 177 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSQITDVVVPIEEVVELKGGEKKTTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVLI+ M D+ +H +K P V+GF+G E P+P+TD+E +I+N+VE + P Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176 >gi|120402246|ref|YP_952075.1| transcription antitermination protein NusG [Mycobacterium vanbaalenii PYR-1] gi|119955064|gb|ABM12069.1| transcription antitermination protein nusG [Mycobacterium vanbaalenii PYR-1] Length = 266 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 25/201 (12%) Query: 1 MTPR-----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M R WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G++ Sbjct: 66 MELRLKPGEWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQ 125 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------- 107 R+ PGY+L++ + D+ + +++TP V GF+G PSP++ ++ + Sbjct: 126 VNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKK 185 Query: 108 ------------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + ++RPV V FEVGE V V DGPFA+ + V+ E+ ++ V Sbjct: 186 PGKAATSAAAAASSEAGGIERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKV 245 Query: 156 EVVIFGRVTPVELAYNQVEKI 176 V IFGR TPVEL +NQV KI Sbjct: 246 LVSIFGRETPVELTFNQVAKI 266 >gi|116629026|ref|YP_814198.1| transcription antiterminator [Lactobacillus gasseri ATCC 33323] gi|238853593|ref|ZP_04643962.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri 202-4] gi|311111179|ref|ZP_07712576.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri MV-22] gi|116094608|gb|ABJ59760.1| transcription antitermination protein nusG [Lactobacillus gasseri ATCC 33323] gi|238833737|gb|EEQ26005.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri 202-4] gi|311066333|gb|EFQ46673.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri MV-22] Length = 183 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+ G G PSP+ D EIE I+ + P Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKEP- 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV+ Sbjct: 125 -KADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179 >gi|313683397|ref|YP_004061135.1| transcription antitermination protein nusg [Sulfuricurvum kujiense DSM 16994] gi|313156257|gb|ADR34935.1| transcription antitermination protein nusG [Sulfuricurvum kujiense DSM 16994] Length = 176 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY +Q Y+ E+ +I ++ + L ++TE+ +P+E V+ V+ G+K +ER Sbjct: 1 MAHRWYSIQTYAGSERSVKAAIENIIAENNLQDVITEVIVPTEDVIEVKNGKKKITERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GYV ++ ++ H I+ P+V GF+G P+P++D++I I+++V P Sbjct: 61 YSGYVFANMDLSIELQHRIQSLPRVAGFIGESNKPTPLSDNDIAVILDRVTNRS-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VFF+ GE V + DGPFA+F G V D E + + V IFGR TPV+++Y QVEKI+ Sbjct: 120 VFFDNGEMVRIVDGPFANFTGTVDEYDLEHGTLKLNVSIFGRSTPVDISYTQVEKII 176 >gi|319443086|ref|ZP_07992242.1| transcription antitermination protein NusG [Corynebacterium variabile DSM 44702] Length = 285 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 27/200 (13%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WYI+Q YS E K ++ R G+D + E+ +P E V V+ G+K +++ PG Sbjct: 85 NWYIIQCYSGYENKVKTNLEMRAQTLGVDQQIHEVVVPIEEVTQVKDGKKKIVKQKLLPG 144 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107 YVL++ + D + I+DTP V F+G P+PV E+ + Sbjct: 145 YVLVRVELDDPSWSVIRDTPGVTSFVGNAGEPTPVKIREVAKFLLPPETATVPADAEGAD 204 Query: 108 -----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + V +EVGE V V GPFAS + + +D S++ Sbjct: 205 SASGVDVSATGVAMAPTANSNQVEVDYEVGESVTVLSGPFASVSATISEIDAANSKLKAL 264 Query: 157 VVIFGRVTPVELAYNQVEKI 176 V IFGR TPVEL ++QVEK+ Sbjct: 265 VSIFGRETPVELEFDQVEKL 284 >gi|67459543|ref|YP_247167.1| transcription antitermination protein NusG [Rickettsia felis URRWXCal2] gi|75536052|sp|Q4UKC9|NUSG_RICFE RecName: Full=Transcription antitermination protein nusG gi|67005076|gb|AAY62002.1| Transcription antitermination protein NusG [Rickettsia felis URRWXCal2] Length = 192 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + R+++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRRIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKETKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVIVTDGPFETFTGTVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190 >gi|323339376|ref|ZP_08079661.1| transcription termination/antitermination factor NusG [Lactobacillus ruminis ATCC 25644] gi|323093199|gb|EFZ35786.1| transcription termination/antitermination factor NusG [Lactobacillus ruminis ATCC 25644] Length = 223 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 1/177 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 +WY++ YS E K ++ R G++ + + +P E + G++ + + Sbjct: 47 EKKWYVLHTYSGYENKVKSNLESRAESMGMEDYIFRVVVPEEEKCETTKTGKEKVEKLKT 106 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ VMTD+ ++ +++TP V GF+G+ S E I + + + Sbjct: 107 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLDEEIQTILRSVGMTRNAD 166 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVG+ + +++G FA G + +D EK ++H + +FGR T EL+++QVE++V Sbjct: 167 FDAEVGDTITITEGAFAGQVGKITEIDSEKMKLHAMIDVFGRETDAELSFDQVERLV 223 >gi|294791363|ref|ZP_06756520.1| transcription termination/antitermination factor NusG [Scardovia inopinata F0304] gi|294457834|gb|EFG26188.1| transcription termination/antitermination factor NusG [Scardovia inopinata F0304] Length = 326 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R+ GL+ V ++ +P E V + K R PG Sbjct: 141 KWYVLHTYSGYEKRVKANIESRVQNFGLEDTVFQVEVPMEEVEKHTEKGKKIISRVRIPG 200 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111 YVLI+ D I++T V GF+G+ P++ E+ +M + Sbjct: 201 YVLIRMWPDDDARRIIRETEGVTGFVGSNREAVPLSRQEVVDMMAPMIRSQALKESGDKP 260 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 A ++ V FE+GE V V+DGPFA+ G++ + ++ V V IFGR TPVEL ++ Sbjct: 261 KAARQRKIEVSFEMGETVTVTDGPFATMTGVISELQPTTQKLTVLVNIFGRDTPVELGFD 320 Query: 172 QVEKI 176 QVEK+ Sbjct: 321 QVEKL 325 >gi|289523625|ref|ZP_06440479.1| transcription termination/antitermination factor NusG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503317|gb|EFD24481.1| transcription termination/antitermination factor NusG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 180 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 99/175 (56%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q Y+ E K ++ R++ G++ + + +P E V V+ G++ +R+ F Sbjct: 6 ERRWYVIQTYAGYENKVKANLEQRIATMGMEDKIFRVLVPMEERVYVKDGKQKKVKRKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+L++ ++ D+ ++ ++ TP V GF+G G NP P++D E++ + ++ +P + Sbjct: 66 PGYILVEMILDDQSWYVVRHTPGVTGFVGAGNNPIPLSDREVQDVFAKIGREQMKPKVEI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ + V GPF G V V EK +V V +FGR T VE YN + KI Sbjct: 126 DLKPGDVIRVKSGPFEGQAGTVVEVIPEKGKVKFSVTLFGRETIVEADYNDLTKI 180 >gi|89257018|ref|YP_514380.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica LVS] gi|115315379|ref|YP_764102.1| transcription antitermination protein NusG [Francisella tularensis subsp. holarctica OSU18] gi|118498141|ref|YP_899191.1| transcription antitermination protein nusG [Francisella tularensis subsp. novicida U112] gi|167009399|ref|ZP_02274330.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica FSC200] gi|169656748|ref|YP_001429284.2| transcription termination/antitermination factor NusG [Francisella tularensis subsp. holarctica FTNF002-00] gi|89144849|emb|CAJ80188.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica LVS] gi|115130278|gb|ABI83465.1| transcription antitermination protein NusG [Francisella tularensis subsp. holarctica OSU18] gi|118424047|gb|ABK90437.1| transcription antitermination protein nusG [Francisella novicida U112] gi|164551816|gb|ABU62328.2| transcription termination/antitermination factor NusG [Francisella tularensis subsp. holarctica FTNF002-00] Length = 177 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 2/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122 VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE + P Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRLRKS 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >gi|18311400|ref|NP_563334.1| transcription antitermination protein NusG [Clostridium perfringens str. 13] gi|110800065|ref|YP_697107.1| transcription antitermination protein NusG [Clostridium perfringens ATCC 13124] gi|110803104|ref|YP_699676.1| transcription antitermination protein NusG [Clostridium perfringens SM101] gi|169344019|ref|ZP_02865009.1| transcription termination/antitermination factor NusG [Clostridium perfringens C str. JGS1495] gi|18146084|dbj|BAB82124.1| transcription antitermination protein [Clostridium perfringens str. 13] gi|110674712|gb|ABG83699.1| transcription termination/antitermination factor NusG [Clostridium perfringens ATCC 13124] gi|110683605|gb|ABG86975.1| transcription termination/antitermination factor NusG [Clostridium perfringens SM101] gi|169297843|gb|EDS79939.1| transcription termination/antitermination factor NusG [Clostridium perfringens C str. JGS1495] Length = 173 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 8/178 (4%) Query: 1 MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M+ RWY+V YS E K ++ + L+ L+ +I +P E + G+ + + Sbjct: 1 MSDRARWYVVHTYSGYENKVKANLEKTIENRNLESLILDIQVPMEESAEEKDGKIKVTLK 60 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 + FPGYV++ VMTD+ ++ +++T V GF+G G P P+TD E+E + V + Sbjct: 61 KKFPGYVIVNMVMTDESWYVVRNTRGVTGFVGPGSKPVPLTDEEVESM------GVMKTA 114 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + EVGE + + G + F I++ ++ EK ++ V +FGR T EL +NQVEK+ Sbjct: 115 MDIDLEVGETINIISGALSGFAAIIQEINVEKGKIKALVDMFGRETLAELDFNQVEKL 172 >gi|28199872|ref|NP_780186.1| transcription antitermination protein NusG [Xylella fastidiosa Temecula1] gi|182682624|ref|YP_001830784.1| transcription antitermination protein NusG [Xylella fastidiosa M23] gi|32129806|sp|Q87A27|NUSG_XYLFT RecName: Full=Transcription antitermination protein nusG gi|28057993|gb|AAO29835.1| transcription antitermination factor [Xylella fastidiosa Temecula1] gi|182632734|gb|ACB93510.1| NusG antitermination factor [Xylella fastidiosa M23] gi|307578905|gb|ADN62874.1| transcription antitermination protein NusG [Xylella fastidiosa subsp. fastidiosa GB514] Length = 185 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 115/183 (62%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS EK +++ R+SR + ++ +P+E VV +R G+K SE +FFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61 Query: 63 GYVLIKAV---------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 GYVLI+ + ++ +H +K+TPKV+GF+G + P P++ E + I+ +V+ Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++P V FE G+ V V DGPF F+G+V+ V+ EK+R+ V V+IFGR TPV+L + Q Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181 Query: 173 VEK 175 V+K Sbjct: 182 VQK 184 >gi|227891221|ref|ZP_04009026.1| transcription antitermination protein NusG [Lactobacillus salivarius ATCC 11741] gi|227867095|gb|EEJ74516.1| transcription antitermination protein NusG [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 +WY++ Y+ E K E++ R + G++ + + +P E + G++ + + Sbjct: 24 EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 83 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI HI++++ + + Sbjct: 84 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSR-- 141 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 S+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V Sbjct: 142 HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 201 >gi|184154743|ref|YP_001843083.1| transcription antitermination protein [Lactobacillus fermentum IFO 3956] gi|260663228|ref|ZP_05864120.1| transcription termination/antitermination factor NusG [Lactobacillus fermentum 28-3-CHN] gi|183226087|dbj|BAG26603.1| transcription antitermination protein [Lactobacillus fermentum IFO 3956] gi|260552420|gb|EEX25471.1| transcription termination/antitermination factor NusG [Lactobacillus fermentum 28-3-CHN] Length = 181 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E + ++ R G++ + ++ +P E V V+ G+ E + F Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ ++TP V GFL G G P+P+ E++ I+ ++ V R Sbjct: 65 PGYVLVEMVMTDQAWYVARNTPGVTGFLGSHGGGSKPTPLLPEEVDRILVRMGQDVAR-- 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + VG+ + + G FA +G V VD +K ++ VE+ +FGR+T EL +NQ++ + Sbjct: 123 TDINVAVGDNIKIIAGAFADLSGKVIEVDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 180 >gi|148381434|ref|YP_001255975.1| transcription termination/antitermination factor NusG [Clostridium botulinum A str. ATCC 3502] gi|153933840|ref|YP_001385809.1| transcription antitermination protein NusG [Clostridium botulinum A str. ATCC 19397] gi|153936508|ref|YP_001389216.1| transcription antitermination protein NusG [Clostridium botulinum A str. Hall] gi|153940614|ref|YP_001392847.1| transcription antitermination protein NusG [Clostridium botulinum F str. Langeland] gi|168178819|ref|ZP_02613483.1| transcription termination/antitermination factor NusG [Clostridium botulinum NCTC 2916] gi|168181851|ref|ZP_02616515.1| transcription termination/antitermination factor NusG [Clostridium botulinum Bf] gi|170755479|ref|YP_001783134.1| transcription antitermination protein NusG [Clostridium botulinum B1 str. Okra] gi|170761546|ref|YP_001788834.1| transcription antitermination protein NusG [Clostridium botulinum A3 str. Loch Maree] gi|226950946|ref|YP_002806037.1| transcription termination/antitermination factor NusG [Clostridium botulinum A2 str. Kyoto] gi|237796955|ref|YP_002864507.1| transcription termination/antitermination factor NusG [Clostridium botulinum Ba4 str. 657] gi|148290918|emb|CAL85054.1| transcription antitermination protein [Clostridium botulinum A str. ATCC 3502] gi|152929884|gb|ABS35384.1| transcription termination/antitermination factor NusG [Clostridium botulinum A str. ATCC 19397] gi|152932422|gb|ABS37921.1| transcription termination/antitermination factor NusG [Clostridium botulinum A str. Hall] gi|152936510|gb|ABS42008.1| transcription termination/antitermination factor NusG [Clostridium botulinum F str. Langeland] gi|169120691|gb|ACA44527.1| transcription termination/antitermination factor NusG [Clostridium botulinum B1 str. Okra] gi|169408535|gb|ACA56946.1| transcription termination/antitermination factor NusG [Clostridium botulinum A3 str. Loch Maree] gi|182670290|gb|EDT82266.1| transcription termination/antitermination factor NusG [Clostridium botulinum NCTC 2916] gi|182674794|gb|EDT86755.1| transcription termination/antitermination factor NusG [Clostridium botulinum Bf] gi|226842758|gb|ACO85424.1| transcription termination/antitermination factor NusG [Clostridium botulinum A2 str. Kyoto] gi|229263161|gb|ACQ54194.1| transcription termination/antitermination factor NusG [Clostridium botulinum Ba4 str. 657] gi|295320826|gb|ADG01204.1| transcription termination/antitermination factor NusG [Clostridium botulinum F str. 230613] gi|322807819|emb|CBZ05394.1| transcription antitermination protein NusG [Clostridium botulinum H04402 065] Length = 174 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FPG Sbjct: 7 KWYVVHTYSGYENKVKVNLQKTVDNRNLHHWIFDIQVPMEEQVEVKDGKKKITLKKTFPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V Sbjct: 67 YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+ Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173 >gi|328949968|ref|YP_004367303.1| NusG antitermination factor [Marinithermus hydrothermalis DSM 14884] gi|328450292|gb|AEB11193.1| NusG antitermination factor [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 9/182 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E K +I R G++ + ++ IP+E +V R+G +K R+ Sbjct: 1 MSIEWYAVHTYVGYEDKVKANIEKRAKALGMEDKIFQVLIPTEEIVEHREGGKKEVVRRK 60 Query: 60 FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111 FPGYV ++ + D + ++ TP V GF+GT P P+T E++ I+ V Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRHTPGVTGFVGTATRPVPLTPDEVQGILEASGVA 120 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + P V F+ G+ V V GPFA F G+V + E+++V V V IFGR TPVEL ++ Sbjct: 121 GKKEGPKPQVSFKEGDVVRVVSGPFADFTGVVSEISPERNKVKVLVSIFGRETPVELDFS 180 Query: 172 QV 173 QV Sbjct: 181 QV 182 >gi|220927765|ref|YP_002504674.1| NusG antitermination factor [Clostridium cellulolyticum H10] gi|219998093|gb|ACL74694.1| NusG antitermination factor [Clostridium cellulolyticum H10] Length = 172 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG Sbjct: 6 KWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPMEEQIEIKDGKKKATLKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P++D E++ + V+ V + Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSDEEVKAM------GVEEFAPEVDY 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EV + V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI Sbjct: 120 EVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRETPVELELTQIQKI 172 >gi|56707309|ref|YP_169205.1| transcription antitermination protein nusG [Francisella tularensis subsp. tularensis SCHU S4] gi|110669779|ref|YP_666336.1| transcription antitermination protein nusG [Francisella tularensis subsp. tularensis FSC198] gi|134301348|ref|YP_001121316.1| transcription termination factor NusG [Francisella tularensis subsp. tularensis WY96-3418] gi|187931078|ref|YP_001891062.1| transcription termination/antitermination factor NusG [Francisella tularensis subsp. mediasiatica FSC147] gi|56603801|emb|CAG44772.1| transcription antitermination protein nusG [Francisella tularensis subsp. tularensis SCHU S4] gi|110320112|emb|CAL08155.1| transcription antitermination protein nusG [Francisella tularensis subsp. tularensis FSC198] gi|134049125|gb|ABO46196.1| transcription termination factor NusG [Francisella tularensis subsp. tularensis WY96-3418] gi|187711987|gb|ACD30284.1| transcription termination/antitermination factor NusG [Francisella tularensis subsp. mediasiatica FSC147] gi|282158434|gb|ADA77825.1| transcription termination factor NusG [Francisella tularensis subsp. tularensis NE061598] Length = 177 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122 VLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKS 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >gi|300857259|ref|YP_003782243.1| transcription antitermination protein NusG [Clostridium ljungdahlii DSM 13528] gi|300437374|gb|ADK17141.1| transcription antitermination protein NusG [Clostridium ljungdahlii DSM 13528] Length = 173 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FPG Sbjct: 6 KWYVVHTYSGYENKVKVNLEKTIENRNLYDWIDDVQVPMEEQVEIKDGKKKITLKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI +MTD ++ +++T V GF+G G P P+TD E++ + + +V Sbjct: 66 YVLIHMIMTDDSWYIVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GISEKPVNVDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP +F +++ ++ EK ++ V +FGR TPVEL +NQ+EKI Sbjct: 120 SVGENVKVKSGPLENFLAVIQEINTEKRKIKALVNMFGRETPVELDFNQIEKI 172 >gi|295698613|ref|YP_003603268.1| transcription termination/antitermination factor NusG [Candidatus Riesia pediculicola USDA] gi|291157364|gb|ADD79809.1| transcription termination/antitermination factor NusG [Candidatus Riesia pediculicola USDA] Length = 182 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++Q +S E K + + + +D EI IPSE ++ ++ G++ SER+FFP Sbjct: 8 MKWYVIQSFSGFETKVRKYLKKYIKLYSMDSYFGEIMIPSEGIIEMKGGQRRKSERKFFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ +M +K +H I+ PKV+GF+G + P+ V EIE I+ +++ +P Sbjct: 68 GYVLVQMIMNEKTWHFIRGIPKVMGFVGGTSDRPASVHQREIEDIVEKLQKIGDQPRPKT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE + VS GPFA FNGI + +D EK+R+ V V IFGR TPVEL ++QVEKI Sbjct: 128 LFEPGEVIRVSSGPFADFNGIAEEIDYEKNRLKVSVSIFGRSTPVELDFSQVEKI 182 >gi|15896397|ref|NP_349746.1| transcription antitermination protein NusG [Clostridium acetobutylicum ATCC 824] gi|15026215|gb|AAK81086.1|AE007810_5 Transcription antiterminator NusG [Clostridium acetobutylicum ATCC 824] Length = 173 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP Sbjct: 6 KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + + V+S+ Sbjct: 66 YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSMGIR------EKVASIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+ Sbjct: 120 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 172 >gi|90962215|ref|YP_536131.1| transcription antitermination protein [Lactobacillus salivarius UCC118] gi|301299871|ref|ZP_07206105.1| transcription termination/antitermination factor NusG [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821409|gb|ABE00048.1| Transcription antitermination protein [Lactobacillus salivarius UCC118] gi|300214879|gb|ADJ79295.1| Transcription antitermination protein nusG [Lactobacillus salivarius CECT 5713] gi|300852542|gb|EFK80192.1| transcription termination/antitermination factor NusG [Lactobacillus salivarius ACS-116-V-Col5a] Length = 186 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 108/180 (60%), Gaps = 6/180 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 +WY++ Y+ E K E++ R + G++ + + +P E + G++ + + Sbjct: 9 EKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKT 68 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ D EI HI++++ + + Sbjct: 69 FPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSR-- 126 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 S+ EVG+ V + DG F+ G + +D EK ++ V++ +FGR T EL Y+QV+K+V Sbjct: 127 HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKLV 186 >gi|312897640|ref|ZP_07757057.1| transcription termination/antitermination factor NusG [Megasphaera micronuciformis F0359] gi|310621273|gb|EFQ04816.1| transcription termination/antitermination factor NusG [Megasphaera micronuciformis F0359] Length = 179 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 99/174 (56%), Gaps = 1/174 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS EKK +++ ++ GL++++ I +P E + V+ GRK R+ + Sbjct: 4 EKNWYVIHTYSGYEKKVKDNLERKVRSMGLENVIERILVPEEDEIDVKDGRKRTVRRKIY 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV ++ + D+ ++ +++TP V GF+G+ P P+ E+ I+ + + + + Sbjct: 64 PGYVFVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLEPQEVRRIL-KSQGIEKEVRPQI 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E+GE+V + GPF +F + ++ EK + + +FGR T VE+ Y+Q+EK Sbjct: 123 SVEIGEQVRIISGPFDNFYATITEINNEKGTLKGLIDMFGRETSVEVDYSQIEK 176 >gi|326386500|ref|ZP_08208123.1| transcription antitermination protein nusG [Novosphingobium nitrogenifigens DSM 19370] gi|326209161|gb|EGD59955.1| transcription antitermination protein nusG [Novosphingobium nitrogenifigens DSM 19370] Length = 178 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 84/178 (47%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWYI+ YS E K E+I R GL LV + +P+E V V++G+KV ER+F Sbjct: 1 MA-RWYIIHAYSGFENKVREAIIAEAERKGLSQLVEAVEVPTETVTEVKRGKKVQVERKF 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP--V 118 PGYVL K M D +YH +K+T KV GFLGT P P+++ E + E A P Sbjct: 60 MPGYVLAKLTMNDDIYHLVKNTAKVTGFLGTNNKPQPISEKEAQRYFGAREQAASEPSNH 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SV +E+G+ V V+ GPFASFNG+V+ +D EK RV V V IFGR TPVEL++ +VE + Sbjct: 120 ISVDYEIGDSVKVNAGPFASFNGVVEELDFEKQRVKVSVSIFGRATPVELSFEEVELV 177 >gi|297179994|gb|ADI16219.1| transcription antiterminator [uncultured bacterium HF0010_16H03] Length = 175 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++Q YS E+K ++ ++ + L EI IP+E++V ++ G K +ER+FFP Sbjct: 1 MDWYVIQAYSGYEQKVKIALEEKIELNNLSDKFGEILIPTEQIVELKGGSKKTTERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+LI+ ++ D + ++ T +V GF+G + P P+++ ++ +I+N++E P Sbjct: 61 GYILIQMLLEDDSWQLVQSTARVSGFVGGTKDRPLPISEDDVNNIINRIEVGEDAPAPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK Sbjct: 121 IYEPGEVVRVCDGPFNDFNGVVENVDYERNMVKVSVQILGRATPVDLEFMQIEK 174 >gi|298531097|ref|ZP_07018498.1| NusG antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298509120|gb|EFI33025.1| NusG antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 197 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 114/173 (65%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWYI+ YS E++ +I + L+ EI +P+E+VV + KG+K S R+FFP Sbjct: 24 PRWYIIHTYSGYEQRVERTIKEMMRTGQDKGLIEEIVVPTEQVVELVKGQKKTSTRKFFP 83 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL+K V D+ +H I+ PKV GF+G+ PSP+TD+E + I++ V++ ++P Sbjct: 84 GYVLVKMVFNDESWHLIQSIPKVTGFIGSKNKPSPITDAEADKILSTVQSRKEQPRPKFH 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+ + V DGPFA+FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 144 FARGDEIRVVDGPFANFNGVVEDVNYDKGKLKVSVSIFGRQTPVELDFVQVSK 196 >gi|239907757|ref|YP_002954498.1| transcription antitermination protein NusG [Desulfovibrio magneticus RS-1] gi|239797623|dbj|BAH76612.1| transcription antitermination protein NusG [Desulfovibrio magneticus RS-1] Length = 187 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 66/172 (38%), Positives = 105/172 (61%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E + ++ + + E+ +P+E+++ + KG K S R+F+PG Sbjct: 15 RWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K M D +H ++ P+V GF+G P+P+ DSE + I++ + + ++P F Sbjct: 75 YVMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYHF 134 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 135 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >gi|332184687|gb|AEE26941.1| Transcription antitermination protein NusG [Francisella cf. novicida 3523] Length = 177 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 2/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER++FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122 VLI+A ++ ++ +K P+V+ +G+ P P++ +E+E I+ VE + P Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVERILGFVEGSKSTVEPRLRKS 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >gi|294814454|ref|ZP_06773097.1| Transcription antitermination protein nusG [Streptomyces clavuligerus ATCC 27064] gi|326442843|ref|ZP_08217577.1| transcription antitermination protein [Streptomyces clavuligerus ATCC 27064] gi|109942286|emb|CAJ84542.1| NusG protein [Streptomyces clavuligerus ATCC 27064] gi|294327053|gb|EFG08696.1| Transcription antitermination protein nusG [Streptomyces clavuligerus ATCC 27064] Length = 304 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 236 Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 237 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 297 SFDQIQK 303 >gi|300932756|ref|ZP_07148012.1| transcription antitermination protein NusG [Corynebacterium resistens DSM 45100] Length = 313 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M WYIVQ YS E K ++ R G+D + E+ +P E V +R G++ + Sbjct: 107 MKKLPGEWYIVQCYSGYENKVKTNLEMRAQTLGVDEHIHEVVVPIEEVTELRDGKRKQVK 166 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------- 107 R+ PGYVL++ + D + ++DTP V F+G P+PV E+ + Sbjct: 167 RKLLPGYVLVRMELEDAAWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPAS 226 Query: 108 -----------------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 V +EVGE V + GPFAS + + +D Sbjct: 227 TEEGTEEAGAVDVSATGVATPPKPASESVVVDYEVGESVTILSGPFASVSATISEIDTTA 286 Query: 151 SRVHVEVVIFGRVTPVELAYNQVEKI 176 +R+ V IFGR TPVEL ++QVEK+ Sbjct: 287 NRLKAMVSIFGRETPVELEFDQVEKL 312 >gi|300087458|ref|YP_003757980.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527191|gb|ADJ25659.1| NusG antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 178 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V YS E++ +++ R+ L+ ++ + +P+E V V+ G++ R+ P Sbjct: 7 KKWYVVHTYSGHEERVRKNLNERIETLSLEDEISRVEVPTEEEVEVKNGQRRTVRRKILP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV+++ VM D+ ++ ++ TP V GF+G P+P+ +E++ I+ Q+E + P V Sbjct: 67 GYVIVQMVMNDQNWNIVRHTPGVTGFVGIEGKPTPLQQNEVDRIITQME--AEAPRIKVG 124 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F++G+ V V DGPF F G+V V +K +V V + +FGR TPVEL + QVEK+ Sbjct: 125 FKIGQSVRVVDGPFVDFIGMVDEVHADKGKVKVLLSLFGRETPVELDFLQVEKL 178 >gi|323700795|ref|ZP_08112707.1| NusG antitermination factor [Desulfovibrio sp. ND132] gi|323460727|gb|EGB16592.1| NusG antitermination factor [Desulfovibrio desulfuricans ND132] Length = 181 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 113/172 (65%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E++ +++ + L+ E+ +P+E++V + KG + S R+F+PG Sbjct: 9 RWYIVHTYSGFEQRVEQTVREMMRTGQDKGLIEEVVMPTEKIVEMVKGERKTSTRKFYPG 68 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y++IK ++TD +H I+ P+V GF+G P+P+ DSE E+I+N +E+ ++P F Sbjct: 69 YIMIKMILTDDSWHLIQSIPRVTGFVGGKNRPTPMRDSEAENILNMMESRQEKPRPKFNF 128 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPF+ FNG+V+ V+ +K ++ V V IFGR TPVEL + QV+K Sbjct: 129 ERGDEVRVIDGPFSGFNGVVEEVNYDKGKLKVSVSIFGRQTPVELDFVQVDK 180 >gi|326390674|ref|ZP_08212229.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325993352|gb|EGD51789.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 177 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG Sbjct: 11 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V Sbjct: 71 YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI Sbjct: 125 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 177 >gi|167036788|ref|YP_001664366.1| transcription antitermination protein NusG [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039507|ref|YP_001662492.1| transcription antitermination protein NusG [Thermoanaerobacter sp. X514] gi|256752774|ref|ZP_05493619.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300915242|ref|ZP_07132557.1| NusG antitermination factor [Thermoanaerobacter sp. X561] gi|307267205|ref|ZP_07548711.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307725166|ref|YP_003904917.1| NusG antitermination factor [Thermoanaerobacter sp. X513] gi|320115210|ref|YP_004185369.1| transcription termination/antitermination factor NusG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853747|gb|ABY92156.1| NusG antitermination factor [Thermoanaerobacter sp. X514] gi|166855622|gb|ABY94030.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748335|gb|EEU61394.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300888966|gb|EFK84113.1| NusG antitermination factor [Thermoanaerobacter sp. X561] gi|306917784|gb|EFN48052.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307582227|gb|ADN55626.1| NusG antitermination factor [Thermoanaerobacter sp. X513] gi|319928301|gb|ADV78986.1| transcription termination/antitermination factor NusG [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 174 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG Sbjct: 8 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V Sbjct: 68 YVLVKMVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDL 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI Sbjct: 122 NVKDTVRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 174 >gi|71279510|ref|YP_271421.1| transcription termination/antitermination factor NusG [Colwellia psychrerythraea 34H] gi|71145250|gb|AAZ25723.1| transcription termination/antitermination factor NusG [Colwellia psychrerythraea 34H] Length = 195 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 101/172 (58%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ +S E + +++ + GL EI +P+E VV +R G+K S R+FFPG Sbjct: 22 RWYVVQAFSGYEGRVQKTLLEHIEIHGLQEKFGEILVPTEEVVEMRAGQKRKSSRKFFPG 81 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++ M +H +K P+V+GF+G + + + Q +P F Sbjct: 82 YVLVQMEMDVDAWHLVKSVPRVLGFIGGTSDRPAPITKKEADRILQRLEETDKPKPKTLF 141 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E GE + V DGPFA FNG+V+ +D EK+R+ V V+IFGR TPV+L + QVEK Sbjct: 142 EPGEVIRVIDGPFADFNGVVEELDYEKNRIKVSVLIFGRSTPVDLEFGQVEK 193 >gi|289579158|ref|YP_003477785.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9] gi|289528871|gb|ADD03223.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9] Length = 176 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L HL+ +I +P+E+VV ++ G+K ER+ FPG Sbjct: 10 KWYVVHTYSGYENKVKANLEKIVENRNLQHLIHQIIVPTEKVVEIKDGKKKTVERKIFPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +MTD ++ +++T V GF+G G P P+T++E+ + ++ ++V F Sbjct: 70 YVLVKMIMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + V V GPF +F G+V+ + E+ + V + +FGR TPVE Q++KI Sbjct: 124 NVKDTVRVISGPFENFIGVVEEIYPERQKAKVLISMFGRETPVEFDLVQLQKI 176 >gi|152964644|ref|YP_001360428.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216] gi|151359161|gb|ABS02164.1| NusG antitermination factor [Kineococcus radiotolerans SRS30216] Length = 320 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W+++ Y+ E + ++ R++ ++ + ++ +P E VV V+ G + N R Sbjct: 131 MPGEWFVIHSYAGYENRVKTNLETRMTSLNMEDYIFQVEVPMEEVVEVKNGTRKNVRRVR 190 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 PGYVL++ +TD+ + ++ TP V GF+G P P+++ EI ++ + Sbjct: 191 IPGYVLVRMDLTDESWGAVRHTPGVTGFVGNTHQPVPLSNDEIFSMLAPTLQPTAKAGEK 250 Query: 117 ----------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 P V FEVGE V V +GPF + + + ++ ++ V V IFGR TPV Sbjct: 251 TETGGGTASAPARVVDFEVGESVTVMEGPFETLPATISEISADRQKLTVLVSIFGRETPV 310 Query: 167 ELAYNQVEKI 176 EL +NQV KI Sbjct: 311 ELNFNQVAKI 320 >gi|290968177|ref|ZP_06559722.1| transcription termination/antitermination factor NusG [Megasphaera genomosp. type_1 str. 28L] gi|290781852|gb|EFD94435.1| transcription termination/antitermination factor NusG [Megasphaera genomosp. type_1 str. 28L] Length = 179 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 107/173 (61%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + ++ ++ GL++++ I +P E V ++ G+K +R+ FP Sbjct: 5 MKWYVIHTYSGYENKVMATLERKVKSMGLENVINRILVPMEDEVDMKDGKKRTVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P+P+T+ E++ I+ + + P + Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPTPLTEEEVKSIL-KSQGVDAEPKIQIA 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++GE+V ++ GPF +F + +++EK + + +FGR T VE+ Y+Q+EK Sbjct: 124 VDIGEQVRITSGPFENFIATITEINKEKGTLKGLIDMFGRETSVEVDYSQIEK 176 >gi|257069526|ref|YP_003155781.1| transcription antitermination protein nusG [Brachybacterium faecium DSM 4810] gi|256560344|gb|ACU86191.1| transcription antitermination protein nusG [Brachybacterium faecium DSM 4810] Length = 301 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E + + R ++ + E+ +P E V+ G+K R PGY Sbjct: 119 WYVIHSYSGHENRVKTQLATRTETQDMEEYIFEVQVPMEDATEVKNGQKKIVRRVRVPGY 178 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +T + + ++DTP V GF+G +P+P++ EI ++ ++ SS Sbjct: 179 VLVRMDLTTESWRVVRDTPGVTGFVGNATDPTPLSFDEIYSLLAPSVGLPEKKRSSGGSK 238 Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F+VGE V V DGPF + + + E ++ V V IFGR TPVELA++QV Sbjct: 239 AAAAQKVPDFQVGESVTVMDGPFETMPATISEIHSEAQKLQVLVSIFGRETPVELAFDQV 298 Query: 174 EKI 176 KI Sbjct: 299 AKI 301 >gi|257867884|ref|ZP_05647537.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30] gi|257874213|ref|ZP_05653866.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10] gi|257876778|ref|ZP_05656431.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20] gi|257801967|gb|EEV30870.1| transcription antiterminator NusG [Enterococcus casseliflavus EC30] gi|257808377|gb|EEV37199.1| transcription antiterminator NusG [Enterococcus casseliflavus EC10] gi|257810944|gb|EEV39764.1| transcription antiterminator NusG [Enterococcus casseliflavus EC20] Length = 180 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K ++ R G+ + + +P E + G+ + F Sbjct: 5 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + Sbjct: 65 PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI Sbjct: 125 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180 >gi|291280160|ref|YP_003496995.1| transcriptional antitermination factor NusG [Deferribacter desulfuricans SSM1] gi|290754862|dbj|BAI81239.1| transcriptional antitermination factor NusG [Deferribacter desulfuricans SSM1] Length = 174 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS EK+ + + ++ G++ + E+ IP+E VV ++KG+K S++R Sbjct: 1 MAKQWYVVHTYSGFEKRVKQLLEEKVKNLGIEDEIDEVLIPTEDVVELKKGKKKISKKRT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ M K +H +K PKV GF+G G NP P+ + +++ ++ V+ Q P + Sbjct: 61 FPGYILVHMEMNTKNWHIVKSIPKVTGFVG-GINPVPIPEQDVKAMLELVKE--QAPRLA 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G++V V DGPF F G ++ V+ +K +V V V IFGR TP+EL + QV++I Sbjct: 118 SKFIKGDKVEVIDGPFQGFTGEIEEVNPDKEKVKVIVSIFGRQTPIELDFLQVKRI 173 >gi|238650690|ref|YP_002916543.1| transcription antitermination protein NusG [Rickettsia peacockii str. Rustic] gi|238624788|gb|ACR47494.1| transcription antitermination protein NusG [Rickettsia peacockii str. Rustic] Length = 192 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 109/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190 >gi|258406197|ref|YP_003198939.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692] gi|257798424|gb|ACV69361.1| NusG antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 179 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 111/174 (63%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWYIV +S E++ ++I + + L+ E+ +P+E+VV + KG+K S R+F+ Sbjct: 5 SARWYIVHAFSGYEQRVEKTIAEMIRSGQGEGLIEEVIVPTEKVVEMVKGQKKTSTRKFY 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K ++ DK +H I+ PKV GF+G + P P+T E + I+ +E+ ++P Sbjct: 65 PGYVLVKMILNDKTWHLIQSIPKVTGFVGGQKRPKPLTQKEADQILQTIESRKEQPRPKF 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V DGPF+ FNG V+ V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 125 HFERGDEVRVIDGPFSGFNGEVEEVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 178 >gi|254391410|ref|ZP_05006613.1| transcription antitermination protein nusG [Streptomyces clavuligerus ATCC 27064] gi|197705100|gb|EDY50912.1| transcription antitermination protein nusG [Streptomyces clavuligerus ATCC 27064] Length = 299 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAKG 231 Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 232 EPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 292 SFDQIQK 298 >gi|256848158|ref|ZP_05553602.1| transcription termination/antitermination factor NusG [Lactobacillus coleohominis 101-4-CHN] gi|256715218|gb|EEU30195.1| transcription termination/antitermination factor NusG [Lactobacillus coleohominis 101-4-CHN] Length = 182 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 102/175 (58%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E + ++ R G++ + + +P E V +V+ G+ +E + F Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEETVRTVKDGQAKETEEKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ ++TP V GFL G G P+P+ E++ IM ++ A V R Sbjct: 65 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMGADVAR-- 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + + VG+ + + GPFA G V VD +K +V+V++ +FGR T E+ ++Q+ Sbjct: 123 TDIDVNVGDSIKIIAGPFADLTGKVTAVDHDKMKVNVDIEMFGRQTSAEVGFDQI 177 >gi|218296037|ref|ZP_03496806.1| NusG antitermination factor [Thermus aquaticus Y51MC23] gi|218243414|gb|EED09943.1| NusG antitermination factor [Thermus aquaticus Y51MC23] Length = 184 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV VR+G +K +R+ Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVEVREGGKKEVVKRK 60 Query: 60 FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112 FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q Sbjct: 121 KKEAPKAQVGFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180 Query: 173 VEK 175 V K Sbjct: 181 VVK 183 >gi|157825315|ref|YP_001493035.1| transcription antitermination protein NusG [Rickettsia akari str. Hartford] gi|157799273|gb|ABV74527.1| transcription antitermination protein NusG [Rickettsia akari str. Hartford] Length = 192 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 111/173 (64%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTVSGAEKRIKEDLLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK +TDK +H +K+ V GFLG+ P +TDSEI++I N +EA + +S Sbjct: 78 SYILIKMNITDKSWHLVKNISGVTGFLGSKTTPKALTDSEIQNIFNNLEAEAKEAKNSKV 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G+V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVIVTDGPFETFTGMVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKK 190 >gi|23465850|ref|NP_696453.1| transcription antitermination protein [Bifidobacterium longum NCC2705] gi|317482952|ref|ZP_07941956.1| transcription termination/antitermination factor NusG [Bifidobacterium sp. 12_1_47BFAA] gi|322691931|ref|YP_004221501.1| transcription antiterminator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326549|gb|AAN25089.1| probable transcription antitermination protein [Bifidobacterium longum NCC2705] gi|291516534|emb|CBK70150.1| transcription termination/antitermination factor NusG [Bifidobacterium longum subsp. longum F8] gi|316915559|gb|EFV36977.1| transcription termination/antitermination factor NusG [Bifidobacterium sp. 12_1_47BFAA] gi|320456787|dbj|BAJ67409.1| putative transcription antiterminator [Bifidobacterium longum subsp. longum JCM 1217] Length = 297 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 232 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291 Query: 172 QVEKI 176 QV+K+ Sbjct: 292 QVQKL 296 >gi|302390946|ref|YP_003826766.1| transcription antitermination protein nusG [Acetohalobium arabaticum DSM 5501] gi|302203023|gb|ADL11701.1| transcription antitermination protein nusG [Acetohalobium arabaticum DSM 5501] Length = 178 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 8/181 (4%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS- 56 M+ + WY + YS E K ++ R+ ++ + +I IPS+ V V+ + Sbjct: 1 MSKKEPEWYAIHTYSGRENKVKSNLEQRIKTIDMEEKIIDILIPSKDEVKVKDEGEKKVS 60 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQ 115 E RFFPGYVLIK +M D+ ++ +++TP VIGF G +G P PV+D E+ I N++ Q Sbjct: 61 EERFFPGYVLIKMIMDDESWYVVRNTPGVIGFAGASGTKPVPVSDPEVRTIKNEMGLQSQ 120 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ V V DGPF F G ++ ++ +KS++ V V +FGR TPVEL ++QVE Sbjct: 121 ---VDIDLEVGDEVRVVDGPFEDFAGEIQEINLDKSKLTVLVSMFGRQTPVELDFDQVED 177 Query: 176 I 176 I Sbjct: 178 I 178 >gi|257869763|ref|ZP_05649416.1| transcription antiterminator NusG [Enterococcus gallinarum EG2] gi|257803927|gb|EEV32749.1| transcription antiterminator NusG [Enterococcus gallinarum EG2] Length = 180 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K ++ R G+ + + +P E + G+K + F Sbjct: 5 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKKKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + Sbjct: 65 PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI Sbjct: 125 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 180 >gi|213693145|ref|YP_002323731.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524606|gb|ACJ53353.1| NusG antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459325|dbj|BAJ69946.1| putative transcription antiterminator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 297 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291 Query: 172 QVEKI 176 QV+K+ Sbjct: 292 QVQKL 296 >gi|297170819|gb|ADI21839.1| transcription antiterminator [uncultured gamma proteobacterium HF0130_25M15] Length = 177 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++QV+SN E K ++ R+ +GL +T++ +P E VV ++ G K +ER+F Sbjct: 1 MEHQWYVLQVFSNFEHKVQRTLTDRIEVTGLQSEITDVVVPIEEVVELKGGEKKTTERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVLI+ M D+ +H +K P V+GF+G E P+P+TD+E +I+N+VE + P Sbjct: 61 FPGYVLIRMTMNDETWHFVKSIPNVMGFIGGTSEKPTPITDNEAMNILNRVEDSADMPKP 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GE V V DGPF F+G+V+NV+ EKS++ V V I GR TPV+L +NQVEK Sbjct: 121 KFTFQPGEVVRVIDGPFNDFSGVVENVNYEKSKLSVAVQILGRPTPVDLNFNQVEK 176 >gi|229821642|ref|YP_002883168.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333] gi|229567555|gb|ACQ81406.1| NusG antitermination factor [Beutenbergia cavernae DSM 12333] Length = 259 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 10/182 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ EK+ ++ R ++ + ++ +P E VV ++ ++ R PGY Sbjct: 78 WYVVHSYAGYEKRVKANLESRTQSLNMEEYIFQVEVPEEDVVEIKNAQRKVVRRVRIPGY 137 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA----------AV 114 VL++ +TD+ + ++ TP V GF+G P P+T SE+ ++ A Sbjct: 138 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTTSEVVSMLAPTLEAKAPATKPGAAP 197 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V F VGE V V+DGPF + + + E ++ V V IFGR TPVEL++NQV Sbjct: 198 AAAPIEVEFTVGESVTVTDGPFDTLPATISEIAPESQKLKVLVSIFGRETPVELSFNQVA 257 Query: 175 KI 176 KI Sbjct: 258 KI 259 >gi|325267345|ref|ZP_08134006.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Kingella denitrificans ATCC 33394] gi|324981140|gb|EGC16791.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Kingella denitrificans ATCC 33394] Length = 183 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 121/181 (66%), Gaps = 6/181 (3%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RWY+VQ YS EK +++ R++R G++ +I +P E VV ++ GR+ SER+F Sbjct: 1 MSKRWYVVQAYSGFEKNVQKTLKERIAREGMEEYFGQILVPVEEVVDIKNGRRTVSERKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQV-----EAAV 114 FPGYVL++ M D +H +K PKV GF+G P P+T E++ +M QV + + Sbjct: 61 FPGYVLVEMEMMDSSWHLVKSIPKVNGFVGGTVHRPLPITQKEVDAMMAQVGGSSQDGVM 120 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 ++P V F++G++V +++GPFA FNG+V++V+ EK+++ V V IFGR TPVEL + QVE Sbjct: 121 KKPKPRVEFDIGQQVRINEGPFADFNGVVEHVEYEKNKLRVMVQIFGRETPVELEFGQVE 180 Query: 175 K 175 K Sbjct: 181 K 181 >gi|183601875|ref|ZP_02963244.1| probable transcription antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219682789|ref|YP_002469172.1| transcription termination/antitermination factor NusG [Bifidobacterium animalis subsp. lactis AD011] gi|241190365|ref|YP_002967759.1| transcription antiterminator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195771|ref|YP_002969326.1| transcription antiterminator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218760|gb|EDT89402.1| probable transcription antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219620439|gb|ACL28596.1| transcription termination/antitermination factor NusG [Bifidobacterium animalis subsp. lactis AD011] gi|240248757|gb|ACS45697.1| Transcription antiterminator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250325|gb|ACS47264.1| Transcription antiterminator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178088|gb|ADC85334.1| NusG [Bifidobacterium animalis subsp. lactis BB-12] gi|295793352|gb|ADG32887.1| Transcription antiterminator [Bifidobacterium animalis subsp. lactis V9] Length = 330 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R+ GL+ + ++ +P E V + K R PG Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G P+P++ E+ +M + A+ Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDKP 263 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V ++VG++V V+DGPF S + +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 264 AAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGFD 323 Query: 172 QVEKI 176 QV+++ Sbjct: 324 QVQRL 328 >gi|189440484|ref|YP_001955565.1| transcription antiterminator [Bifidobacterium longum DJO10A] gi|227547016|ref|ZP_03977065.1| transcription antiterminator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133805|ref|YP_004001144.1| nusg [Bifidobacterium longum subsp. longum BBMN68] gi|322689997|ref|YP_004209731.1| transcription antiterminator [Bifidobacterium longum subsp. infantis 157F] gi|189428919|gb|ACD99067.1| Transcription antiterminator [Bifidobacterium longum DJO10A] gi|227212548|gb|EEI80437.1| transcription antiterminator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773091|gb|ADQ02579.1| NusG [Bifidobacterium longum subsp. longum BBMN68] gi|320461333|dbj|BAJ71953.1| putative transcription antiterminator [Bifidobacterium longum subsp. infantis 157F] Length = 297 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291 Query: 172 QVEKI 176 QV+K+ Sbjct: 292 QVQKL 296 >gi|296454931|ref|YP_003662075.1| NusG antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|296184363|gb|ADH01245.1| NusG antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 297 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 112 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 171 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 172 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 231 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 232 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 291 Query: 172 QVEKI 176 QV+K+ Sbjct: 292 QVQKL 296 >gi|158319530|ref|YP_001512037.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs] gi|158139729|gb|ABW18041.1| NusG antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 172 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +I + G++ ++ E+ +P+E + ++ G+K E + FPG Sbjct: 6 RWYVMHTYSGHENKVKMNIEKMVENRGMEDIILEVKVPTEEKIEIKNGKKKVKESKLFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K MTD+ ++ +++T V GF+G P P+TD EI+ + V+ P + Sbjct: 66 YVLVKMFMTDESWYLVRNTRGVTGFVGPSSKPIPLTDQEIKSM------GVEEPRIEIDV 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VGE + V GPF +F G + +++ EK + V + +FGR TPVEL ++Q+EKI Sbjct: 120 KVGESIKVISGPFETFIGTIDHINLEKQTLKVRISMFGRETPVELEFDQIEKI 172 >gi|297567070|ref|YP_003686042.1| NusG antitermination factor [Meiothermus silvanus DSM 9946] gi|296851519|gb|ADH64534.1| NusG antitermination factor [Meiothermus silvanus DSM 9946] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 9/182 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E K ++ R++ + +L+ ++ IP+E VV R G +K R+ Sbjct: 1 MSIEWYAVHTYVGYEDKVKANLEKRVAALNMGNLIYQVLIPTEEVVEHRDGGKKDVVRRK 60 Query: 60 FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111 FPGYV ++ M D + +++TP V GF+GT P P+T E++HI+ + Sbjct: 61 LFPGYVFVQMDMGDDPAEVNEAWEAVRNTPGVTGFVGTATRPVPLTPDEVQHILEVSGLA 120 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL + Sbjct: 121 GKKEAPKPQVSFKEGDVVRVVSGPFADFTGVVGEVNLERQKVKVLVSIFGRETPVELDFA 180 Query: 172 QV 173 QV Sbjct: 181 QV 182 >gi|193214885|ref|YP_001996084.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110] gi|193088362|gb|ACF13637.1| NusG antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 203 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 106/173 (61%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY V+ YS E+K E + ++ +G+ + ++ IP ER V V+ G+K + + FPG Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI+AV+ + + + D P VIGFLG G+ P+P+ E++ ++ + ++ V+ F Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPF 148 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG V + DGPF S G+++ V+ EK +V V + FGR TP E+ ++QV+ + Sbjct: 149 EVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVKLV 201 >gi|300362324|ref|ZP_07058500.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri JV-V03] gi|300353315|gb|EFJ69187.1| transcription termination/antitermination factor NusG [Lactobacillus gasseri JV-V03] Length = 183 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 5/176 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E+K + + R G+ + + + +P E+ +G+K + + F Sbjct: 6 EKKWYVLHTYSGYEEKVKKDLLSRAQSMGMQNYIFRVIVPEEQKTETVRGKKQEVDEKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+ G G PSP+ D EIE I+ + Sbjct: 66 PGYVLVEMVMTDESWYVVRNTPNVTGFVGSHGGGSKPSPLYDEEIERILKSQGQPAKE-- 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +EVGE V + DG F+ +G + ++ EK +++V + +FGR T EL YNQV+ Sbjct: 124 QKADYEVGETVTIIDGAFSGMSGKITEINPEKDKLYVSIDMFGRETNAELDYNQVK 179 >gi|94987376|ref|YP_595309.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00] gi|94731625|emb|CAJ54988.1| transcription antiterminator [Lawsonia intracellularis PHE/MN1-00] Length = 194 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWYIV YS E++ +I + + L+ E+ +P+ERVV + + G K + R+F+P Sbjct: 21 RWYIVHTYSGFEQRVEATIKEMMRSGQDEGLIHEVVLPTERVVELGKGGLKRTTTRKFYP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY++++ MTD +H I+ PKV GF+G P+P+ D E I++ +E ++P Sbjct: 81 GYIMLRMTMTDYSWHLIQTIPKVTGFVGGKNRPAPMKDEEASKILSLMETRQEQPRPKFS 140 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ + V DGPF FNGIV++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 141 FERGDEIRVIDGPFGGFNGIVEDVNYDKGKLRVSVSIFGRQTPVELDFIQVSK 193 >gi|239620885|ref|ZP_04663916.1| transcription antitermination protein nusG [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516146|gb|EEQ56013.1| transcription antitermination protein nusG [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 293 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 108 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 167 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 168 YVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKP 227 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 228 AAAKKRRVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 287 Query: 172 QVEKI 176 QV+K+ Sbjct: 288 QVQKL 292 >gi|319950479|ref|ZP_08024392.1| transcription antitermination protein NusG [Dietzia cinnamea P4] gi|319435838|gb|EFV91045.1| transcription antitermination protein NusG [Dietzia cinnamea P4] Length = 328 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 16/188 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ Y+ E K ++ R G + + ++ +P E V+ G+K + R+ PGY Sbjct: 140 WFVIHSYAGYENKVKANLETRAVTLGAEDKIFQVEVPVEEFTEVKNGQKKVANRKVLPGY 199 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 VL++ + D+ + +++TP V GF+ G P+P++ S++ + Sbjct: 200 VLVRMELDDESWGVVRNTPGVTGFVSATGGAAGKPTPLSLSDVAKFLAPKPEKKSAAAGT 259 Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V F+VGE V V DGPFA+ + VD ++ V V IFGR TPVEL Sbjct: 260 ADDQGFAPQAVEVEFQVGESVTVMDGPFATLPASISEVDPAAQKLKVLVSIFGRETPVEL 319 Query: 169 AYNQVEKI 176 + QVEKI Sbjct: 320 GFTQVEKI 327 >gi|303327278|ref|ZP_07357720.1| transcription termination/antitermination factor NusG [Desulfovibrio sp. 3_1_syn3] gi|302863266|gb|EFL86198.1| transcription termination/antitermination factor NusG [Desulfovibrio sp. 3_1_syn3] Length = 190 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 PRWYIV YS E++ ++I L+ E+ +P+E+V+ + + G K + R+F+ Sbjct: 16 PRWYIVHTYSGFEQRVQKTINEMSRTGQDQGLIQEVVVPTEKVIELAKGGEKRTTTRKFY 75 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+++ +MTD +H ++ PKV GF+G P+P+ DSE E I+ +E + P Sbjct: 76 PGYVMVRMIMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDSEAERILALMETRQETPRPKF 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ G+ V V DGPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 136 NFDRGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 189 >gi|291457099|ref|ZP_06596489.1| transcription termination/antitermination factor NusG [Bifidobacterium breve DSM 20213] gi|291380934|gb|EFE88452.1| transcription termination/antitermination factor NusG [Bifidobacterium breve DSM 20213] Length = 275 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ G++ + ++ +P E V + K R PG Sbjct: 90 KWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPG 149 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 150 YVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKP 209 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 210 AAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 269 Query: 172 QVEKI 176 QV+K+ Sbjct: 270 QVQKL 274 >gi|88856010|ref|ZP_01130672.1| transcription antitermination factor [marine actinobacterium PHSC20C1] gi|88814877|gb|EAR24737.1| transcription antitermination factor [marine actinobacterium PHSC20C1] Length = 315 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 16/189 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ EK+ +I R ++ V ++ +P E VV ++ G++ R PG Sbjct: 127 KWYVIHSYAGFEKRVKHNIENRKVSMAMEDYVFQVEVPMEDVVEIKNGQRKLVNRVRIPG 186 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120 YVL++ + + + ++ TP V GF+G NP P+ E +++ + V+ P + Sbjct: 187 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPVPLRFEEAFNMLKSLVEIVEAPATKGSS 246 Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + FE+GE + + +G FA G + + E ++ V V +F R TPVE Sbjct: 247 AKGKTAARSIPAEIDFEIGETITIKEGSFAGLPGSISEIKAESGKLIVLVSLFERETPVE 306 Query: 168 LAYNQVEKI 176 L+++QV K+ Sbjct: 307 LSFDQVTKL 315 >gi|325510553|gb|ADZ22189.1| transcription antitermination protein NusG [Clostridium acetobutylicum EA 2018] Length = 178 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + L +L+ +I +P + V + G+K + ++ FP Sbjct: 11 KWYVVHTYSGYENKVKANIEKTIENRNLQNLIMDIQVPLQEEVEEKDGKKKVTLKKVFPS 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIK VMTD+ ++ +++T GF+G G P P+TD E++ + + V+S+ Sbjct: 71 YVLIKMVMTDESWYVVRNTRGCTGFVGPGSKPVPLTDDEVKSMGIR------EKVASIDI 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP +++ ++ EK ++ V +FGR TPVEL +NQ+EK+ Sbjct: 125 VVGENVKVISGPLMDQVALIQEINLEKGKLKGLVNMFGRETPVELDFNQIEKL 177 >gi|242278647|ref|YP_002990776.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638] gi|242121541|gb|ACS79237.1| NusG antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 186 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 111/172 (64%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV YS E++ +++ + + L+ E+ +P+E+VV + KG K S R+F+PG Sbjct: 14 RWYIVHTYSGFEQRVEQTVREMMRTGQDNGLIEEVVVPTEKVVELVKGEKRTSTRKFYPG 73 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV+IK +M D+ +H I+ P+V GF+G P+P+ DSE I++ +E ++P F Sbjct: 74 YVMIKMIMEDESWHLIQSIPRVTGFIGGKNRPTPMRDSEAAKILSLMEDRQEQPRPKFNF 133 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V V DGPF+ FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 134 DRGDEVRVIDGPFSGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 185 >gi|300769745|ref|ZP_07079627.1| transcription termination/antitermination factor NusG [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492653|gb|EFK27839.1| transcription termination/antitermination factor NusG [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 182 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ Y+ E K ++ R+ G++ + + +P E V+ G+ ++ F Sbjct: 6 EKRWYVLHTYAGYENKVSSNLESRIQSMGMEDNIFRVVVPEEEAHEVKNGKDKVEMKKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+P+ E E I++Q+ + Sbjct: 66 PGYVLVEMVMTDQAWYIVRNTPGVTGFLGSHGQGSKPTPLLPEEAEQILHQLGMSA--RH 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE+V + DG F+ +G + +D EK ++ V + +FGR T EL ++QV++I Sbjct: 124 TELDVEVGEQVTIIDGAFSGGSGEITEIDNEKMKLKVNINMFGRETSTELDFDQVDQI 181 >gi|313679512|ref|YP_004057251.1| transcription antitermination protein nusg [Oceanithermus profundus DSM 14977] gi|313152227|gb|ADR36078.1| transcription antitermination protein nusG [Oceanithermus profundus DSM 14977] Length = 189 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 13/186 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E K E++ R G+ + ++ IP+E +V R+G +K R+ Sbjct: 1 MSIEWYAVHTYVGYEDKVKENLEKRARALGMQDKIFQVLIPTEEIVEHREGGKKETVYRK 60 Query: 60 FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQ 109 FPGYV ++ + D + +++TP V G +GT E P P+T E++ I+ Sbjct: 61 LFPGYVFVQMDLGDNPEDPNEAWEVVRNTPGVTGVVGTSEGGKYRPVPLTPDEVQRILEV 120 Query: 110 --VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + + P V F+ G+ V V GPFA F G+V ++ E+++V V V IFGR TPVE Sbjct: 121 SGLAGRKESPKPQVTFKEGDVVRVVSGPFADFTGVVSEINPERNKVKVLVSIFGRETPVE 180 Query: 168 LAYNQV 173 L ++QV Sbjct: 181 LDFSQV 186 >gi|254456595|ref|ZP_05070024.1| transcription termination/antitermination factor NusG [Candidatus Pelagibacter sp. HTCC7211] gi|207083597|gb|EDZ61023.1| transcription termination/antitermination factor NusG [Candidatus Pelagibacter sp. HTCC7211] Length = 176 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 119/174 (68%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYIVQ +S+ E K I ++ + EI +P+ V V++G++V ++++FP Sbjct: 2 KNWYIVQSHSSFENKVAGLIKEEADKAKIGEKFEEIIVPTHDVTEVKRGKRVQRKKKYFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLIK+ M + +YH IK+ +V GFLG+ P PV+D EIE I+ Q++ V +P S + Sbjct: 62 GYVLIKSEMDNNIYHMIKNIKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGIE 121 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VGE+V V DGPFASF+G+V+++DEEKSR+ V V IFGR TPV+L YNQVEK+ Sbjct: 122 YSVGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKV 175 >gi|304385479|ref|ZP_07367824.1| transcription termination/antitermination factor NusG [Pediococcus acidilactici DSM 20284] gi|304328686|gb|EFL95907.1| transcription termination/antitermination factor NusG [Pediococcus acidilactici DSM 20284] Length = 202 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ R G++ + + +P E + + G++ ++ F Sbjct: 26 EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 85 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ Sbjct: 86 PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTA--RH 143 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI Sbjct: 144 ADINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 201 >gi|29831452|ref|NP_826086.1| transcription antitermination protein [Streptomyces avermitilis MA-4680] gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces avermitilis MA-4680] Length = 287 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 280 SFDQIQK 286 >gi|270160341|ref|ZP_06188994.1| transcription termination/antitermination factor NusG [Legionella longbeachae D-4968] gi|289163818|ref|YP_003453956.1| transcription antitermination protein NusG [Legionella longbeachae NSW150] gi|269987153|gb|EEZ93411.1| transcription termination/antitermination factor NusG [Legionella longbeachae D-4968] gi|288856991|emb|CBJ10805.1| transcription antitermination protein NusG [Legionella longbeachae NSW150] Length = 181 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FF Sbjct: 6 SKQWYVVHAYSGYENFVMREIISRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H I+ P+V+GF+G + P+P+TD E IM +VE V +P Sbjct: 66 PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE V V +GPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 126 ILFEPGEVVRVKEGPFVDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFSQVEK 180 >gi|239943560|ref|ZP_04695497.1| putative transcription antitermination factor NusG [Streptomyces roseosporus NRRL 15998] gi|239990013|ref|ZP_04710677.1| putative transcription antitermination factor NusG [Streptomyces roseosporus NRRL 11379] Length = 299 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 232 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 291 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 292 SFDQIQK 298 >gi|744230|prf||2014256A nusG gene Length = 294 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|320449272|ref|YP_004201368.1| transcription termination/antitermination factor NusG [Thermus scotoductus SA-01] gi|320149441|gb|ADW20819.1| transcription termination/antitermination factor NusG [Thermus scotoductus SA-01] Length = 184 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY V Y E+KA ++ R+ G++ + ++ IP+E VV +R+G K ++ Sbjct: 1 MSIEWYAVHTYVGQEEKAKANLEKRVKAFGMEDKIFQVLIPTEEVVELREGGKKEVVKKK 60 Query: 61 -FPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112 FPGY+ ++ + D+ + ++ TP + GF+G G P P++ E+ HI+ + Sbjct: 61 LFPGYLFVQMDLGDEEEPNEAWEVVRGTPGITGFVGAGHRPVPLSPDEVRHILEVSGLLG 120 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + P + V F G++V V GPFA F G V ++ EK +V V V IFGR TPVEL ++Q Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPEKGKVKVMVTIFGRETPVELDFSQ 180 Query: 173 VEK 175 V K Sbjct: 181 VVK 183 >gi|257454929|ref|ZP_05620177.1| transcription termination/antitermination factor NusG [Enhydrobacter aerosaccus SK60] gi|257447639|gb|EEV22634.1| transcription termination/antitermination factor NusG [Enhydrobacter aerosaccus SK60] Length = 176 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIVQ +S EK+ S+ R++RS ++ +P+E V+ +R G+K SER+FFP Sbjct: 1 MRWYIVQAFSGFEKQVQRSLIERINRSEYKESFGQVLVPTEEVIEMRDGKKRKSERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ M D +H +KD P+V+GF+G ENP+P+T E + I+N++ +P Sbjct: 61 GYVLIEMDMNDNTWHLVKDCPRVMGFIGGTPENPAPITPKEADTILNRLNTNENKPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPF F G+V+ VD EKSR+ + V +F R TPVEL + QVEKI Sbjct: 121 LFEPGEEVLVIDGPFTEFRGLVEKVDYEKSRLQLTVNVFNRPTPVELEFKQVEKI 175 >gi|157803322|ref|YP_001491871.1| transcription antitermination protein NusG [Rickettsia canadensis str. McKiel] gi|157784585|gb|ABV73086.1| transcription antitermination protein NusG [Rickettsia canadensis str. McKiel] Length = 192 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ P V GFLG+ P +T+ EI++I N +EA + +S Sbjct: 78 SYLLIKMNMTDKSWHFVKNIPGVTGFLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL ++QV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVSIFGKATPIELNFSQVKK 190 >gi|187776563|ref|ZP_02993036.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC 15579] gi|187775222|gb|EDU39024.1| hypothetical protein CLOSPO_00077 [Clostridium sporogenes ATCC 15579] Length = 174 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L H + +I +P E V V+ G+K + ++ FPG Sbjct: 7 KWYVVHTYSGYENKVKVNLQKTVDNRDLHHWILDIQVPMEEQVEVKDGKKKITLKKTFPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +MTD ++ +++T V GF+G G P P+T+ E+ + ++ V Sbjct: 67 YVLVKMLMTDDSWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LSMGIKEKQPEVDV 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V V GP F ++ ++ EK ++ V +FGR TPVEL +NQ+EK+ Sbjct: 121 EVGENVKVVSGPLEGFPATIQEINVEKGKIKALVNMFGRETPVELDFNQIEKL 173 >gi|254383188|ref|ZP_04998542.1| transcription antitermination protein nusG [Streptomyces sp. Mg1] gi|194342087|gb|EDX23053.1| transcription antitermination protein nusG [Streptomyces sp. Mg1] Length = 303 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 175 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 235 Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 236 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 295 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 296 SFDQIQK 302 >gi|325570755|ref|ZP_08146481.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Enterococcus casseliflavus ATCC 12755] gi|325156601|gb|EGC68781.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Enterococcus casseliflavus ATCC 12755] Length = 197 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K ++ R G+ + + +P E + G+ + F Sbjct: 22 EKNWYVLHTYSGYENKVKANLESRAQSMGMGDYIFRVVVPEEVETEEKNGKTKEIVHKTF 81 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + Sbjct: 82 PGYVLVEMVMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSIGMSTRTVE 141 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V E+GE V + +G F+ G V +DEEK ++ V + +FGR T EL + QV+KI Sbjct: 142 LEV--EIGETVKIIEGAFSGLEGQVAEIDEEKQKLKVNIDMFGRETSTELDFEQVDKI 197 >gi|326333421|ref|ZP_08199666.1| transcription termination/antitermination factor NusG [Nocardioidaceae bacterium Broad-1] gi|325948782|gb|EGD40877.1| transcription termination/antitermination factor NusG [Nocardioidaceae bacterium Broad-1] Length = 270 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 22/194 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ YS E + ++ R+ ++ + EI +P+E V ++ G++ +R PGY Sbjct: 77 WFVIHTYSGMENRVKSNLENRIVSLNMEDYIHEIVVPTEEVPEIKNGQRKMVKRTVLPGY 136 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +TD+ + ++ TP V GF+G P P++ +E+E+++ A Sbjct: 137 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMTEVENMLAPAVVAQAEAEAAAAGE 196 Query: 114 -----------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 ++PV V F G+ V V DGPFA+ + + ++ E RV V IFGR Sbjct: 197 AATASSGATGTAKKPVEVVDFAEGDSVTVVDGPFATLHATITELNAESQRVKALVEIFGR 256 Query: 163 VTPVELAYNQVEKI 176 TPVEL++NQ+EK+ Sbjct: 257 ETPVELSFNQIEKV 270 >gi|220904896|ref|YP_002480208.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869195|gb|ACL49530.1| NusG antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 190 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFP 62 RWYIV YS E++ ++I L+ E+ +P+E+V+ + G++ S R+F+P Sbjct: 17 RWYIVHTYSGFEQRVQKTINELRRTGQEQGLIEEVVVPTEKVIEPTKGGQQRTSTRKFYP 76 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV+++ VMTD +H ++ PKV GF+G P+P+ D E E I++ +E + P Sbjct: 77 GYVMVRMVMTDLSWHLVQSIPKVTGFVGGKNRPTPMRDGEAERILSLMETRQETPRPKFN 136 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ G+ V V +GPF FNG+V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 137 FDRGDEVRVIEGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFAQVSK 189 >gi|157828050|ref|YP_001494292.1| transcription antitermination protein NusG [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932747|ref|YP_001649536.1| transcription antitermination protein NusG [Rickettsia rickettsii str. Iowa] gi|157800531|gb|ABV75784.1| transcription antitermination protein NusG [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907834|gb|ABY72130.1| transcription antitermination protein [Rickettsia rickettsii str. Iowa] Length = 192 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 109/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKNFKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEGIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190 >gi|182436668|ref|YP_001824387.1| putative transcription antitermination factor NusG [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777290|ref|ZP_08236555.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|548396|sp|P36260|NUSG_STRGR RecName: Full=Transcription antitermination protein nusG gi|603589|emb|CAA51296.1| NusG [Streptomyces griseus] gi|178465184|dbj|BAG19704.1| putative transcription antitermination factor NusG [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657623|gb|EGE42469.1| NusG antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 294 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|116333236|ref|YP_794763.1| transcription antiterminator [Lactobacillus brevis ATCC 367] gi|116098583|gb|ABJ63732.1| transcription antitermination protein nusG [Lactobacillus brevis ATCC 367] Length = 182 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 5/179 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ Y+ E K + ++ R G+ + + +P E V+ G+ + + F Sbjct: 6 EKQWYVLHTYAGYENKVMANLESRAESMGMQDNIFRVVVPEEEEHEVKNGKDKVTMGKTF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VM+D+ ++ +++TP V GFLG+ G P+P+ E+E I+ +V + Sbjct: 66 PGYVLVEMVMSDQSWYIVRNTPGVTGFLGSHGQGSKPTPLLPDEVERILRRVG--ISARH 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + + G+ V + DG F+ G + VD EK ++ V + +FGR T EL ++QV+ IV Sbjct: 124 AELDVAPGDSVTIVDGAFSGLVGKITEVDNEKMKLKVNIDMFGRETSTELNFDQVDPIV 182 >gi|24216124|ref|NP_713605.1| transcription antiterminator [Leptospira interrogans serovar Lai str. 56601] gi|45656642|ref|YP_000728.1| transcription antitermination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197367|gb|AAN50623.1| transcription antiterminator [Leptospira interrogans serovar Lai str. 56601] gi|45599878|gb|AAS69365.1| transcription antitermination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 181 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+ Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLIQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPV 118 PGYVLI+ M D I+ P V F+G+ + E + + Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+ Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178 >gi|294792777|ref|ZP_06757924.1| transcription termination/antitermination factor NusG [Veillonella sp. 6_1_27] gi|294794531|ref|ZP_06759667.1| transcription termination/antitermination factor NusG [Veillonella sp. 3_1_44] gi|294454861|gb|EFG23234.1| transcription termination/antitermination factor NusG [Veillonella sp. 3_1_44] gi|294456676|gb|EFG25039.1| transcription termination/antitermination factor NusG [Veillonella sp. 6_1_27] Length = 178 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + + ++P +V Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVGE V ++ G F G++ ++ +K + + V +F R T VEL ++QVEK Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPDKGTLKLSVEMFNRDTEVELEFSQVEK 176 >gi|34112954|gb|AAQ62399.1| predicted transcription antiterminator NusG [uncultured marine gamma proteobacterium EBAC31A08] gi|37912939|gb|AAR05271.1| predicted transcription antiterminator NusG [uncultured marine gamma proteobacterium EB000-45B06] gi|40063166|gb|AAR38003.1| transcription antitermination protein NusG [uncultured marine bacterium 562] Length = 175 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 110/174 (63%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++Q YS E+K ++ ++ +GL EI IP+E++V ++ G K +ER+FFP Sbjct: 1 MDWYVIQAYSGYEQKVKIALEEKIELNGLSEKFGEILIPTEQIVELKGGTKKTTERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+LI+ ++ D + ++ TP+V GF+G + P P+++ ++ I+N++E P Sbjct: 61 GYILIEMLLEDDSWQLVQSTPRVSGFVGGTKDRPLPISEDDVNSIINRIEVGEDAPAPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E GE V V DGPF FNG+V+NVD E++ V V V I GR TPV+L + Q+EK Sbjct: 121 IYEPGEVVRVCDGPFNDFNGVVENVDYERNMVKVAVQILGRATPVDLEFIQIEK 174 >gi|319957698|ref|YP_004168961.1| transcription antitermination protein nusg [Nitratifractor salsuginis DSM 16511] gi|319420102|gb|ADV47212.1| transcription antitermination protein nusG [Nitratifractor salsuginis DSM 16511] Length = 176 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E+ +I + GL + ++ +P+E V+ V+ G+K +ER Sbjct: 1 MAHQWYAIQTYAGSERSVKRAIEQMVEDYGLQDRIDKVVVPTEEVIEVKNGQKKITERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GYV + ++H I+ P+V F+G + P+P+ +S+I+ I+ ++ + P Sbjct: 61 YSGYVFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTPLNESDIKLILEKM-ENKKPPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+ Sbjct: 120 VDFEPGEMVRIIDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEIDYTQVEKII 176 >gi|282860792|ref|ZP_06269858.1| NusG antitermination factor [Streptomyces sp. ACTE] gi|282564528|gb|EFB70064.1| NusG antitermination factor [Streptomyces sp. ACTE] Length = 297 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 110 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 169 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 229 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 230 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 290 SFDQIQK 296 >gi|291541516|emb|CBL14626.1| transcription antitermination protein nusG [Ruminococcus bromii L2-63] Length = 175 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+V YS E K + L ++ ++ +P E V + E + F Sbjct: 5 EARWYVVHTYSGYENKVATDLMTTAENRNLQDMIIDVKVPVEIVTETVGDKTKEVENKLF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV +K V TD+ ++ +++ GF+G G P P+TD+E+ + V+ + Sbjct: 65 PGYVFVKMVYTDETWYVVRNIRGCTGFVGPGSKPVPLTDAEVYRM------GVETRSVKL 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VG+ V + DGP F G+V+ +D +K V V V +FGR TPVEL Q E I Sbjct: 119 NYSVGDSVRIIDGPLEDFVGVVEEIDADKDYVRVVVSMFGRETPVELELAQAEPI 173 >gi|15892099|ref|NP_359813.1| transcription antitermination protein NusG [Rickettsia conorii str. Malish 7] gi|32129825|sp|Q92J91|NUSG_RICCN RecName: Full=Transcription antitermination protein nusG gi|15619223|gb|AAL02714.1| transcription antitermination protein NusG [Rickettsia conorii str. Malish 7] Length = 192 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 111/173 (64%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + H +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTHFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190 >gi|320009119|gb|ADW03969.1| NusG antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 288 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 160 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 220 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 221 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 281 SFDQIQK 287 >gi|269793111|ref|YP_003318015.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100746|gb|ACZ19733.1| NusG antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 181 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 100/175 (57%), Gaps = 1/175 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIVQ YS E K ++ R++ G++ + + +P E V V++GR R+ FP Sbjct: 7 RWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122 YVL++ +M D+ ++ ++ TP V GF+G+G +P P+TD E+ +M ++ +P + Sbjct: 67 YVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVELD 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVG+ V V GPF G V VD +K RV V +FGR T E + +EK++ Sbjct: 127 IEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKVL 181 >gi|270291194|ref|ZP_06197417.1| transcription termination/antitermination factor NusG [Pediococcus acidilactici 7_4] gi|270280590|gb|EFA26425.1| transcription termination/antitermination factor NusG [Pediococcus acidilactici 7_4] Length = 181 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ R G++ + + +P E + + G++ ++ F Sbjct: 5 EKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVKKNEF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E++ ++ ++ Sbjct: 65 PGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTA--RH 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE V + DG F G + +D ++ V + +FGR T EL +Q++KI Sbjct: 123 ADINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI 180 >gi|253681448|ref|ZP_04862245.1| transcription termination/antitermination factor NusG [Clostridium botulinum D str. 1873] gi|253561160|gb|EES90612.1| transcription termination/antitermination factor NusG [Clostridium botulinum D str. 1873] Length = 173 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVAQKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + + Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP SF I++ ++ EK ++ V +FGR TP EL +NQ+EKI Sbjct: 120 SVGESVKVISGPLKSFVAIIQEINVEKQKIKALVNMFGRETPTELNFNQIEKI 172 >gi|133872295|gb|ABO40215.1| transcription antitermination component [Candidatus Liberibacter americanus] Length = 177 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 126/177 (71%), Positives = 148/177 (83%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RW+I+QVYSNCEK AV+SI R +R+GL + + EI +PSE+VV VRKGRKV+SERRF Sbjct: 1 MVSRWFIIQVYSNCEKSAVKSICERSNRTGLRNFLEEIIVPSEKVVVVRKGRKVDSERRF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL KAVM D+VYH IK PKVIGFLG+ NPSPV+D EI IM QVEA+ PVSS Sbjct: 61 FPGYVLAKAVMNDEVYHAIKSAPKVIGFLGSDNNPSPVSDEEINRIMGQVEASEYGPVSS 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE+GE+V VSDGPFASFNGIVK+VDE+KSR+ VEV+IFGR TPVEL+YNQVEKIV Sbjct: 121 IMFEIGEQVYVSDGPFASFNGIVKDVDEDKSRLKVEVLIFGRATPVELSYNQVEKIV 177 >gi|256830550|ref|YP_003159278.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256579726|gb|ACU90862.1| NusG antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 180 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 107/172 (62%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYI+ YS E++ ++I + LV E+ +P+E+VV + KG+K S R+F+PG Sbjct: 8 RWYIIHTYSGFEQRVEQTIKEMIRTGQAKGLVEEVIVPTEKVVELIKGQKRTSTRKFYPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y ++K V TD +H I+ PKV GF+G P P+TD E + I+ +E ++P F Sbjct: 68 YAMVKMVFTDDSWHMIQSIPKVTGFIGGKSRPVPLTDKEAQRILATIETRKEQPRPKFHF 127 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V V DGPFA+FN V++V+ +K ++ V V IFGR TPVEL + QV K Sbjct: 128 ERGDDVRVIDGPFANFNATVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVTK 179 >gi|229917372|ref|YP_002886018.1| NusG antitermination factor [Exiguobacterium sp. AT1b] gi|229468801|gb|ACQ70573.1| NusG antitermination factor [Exiguobacterium sp. AT1b] Length = 183 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 10/184 (5%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-----KGRKVN 55 M +W++VQ YS E E++ R+ ++ + + +P+E + + Sbjct: 1 MEKQWFVVQTYSGFENNVKENLERRIGSMNMEDKIFRVLVPTETTQEEVTLKSGEKKIKE 60 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEA 112 E + FPGYV ++ VMTD ++ +++TP V GF G G P P+ E+ ++++Q+ Sbjct: 61 REVKSFPGYVFVEMVMTDDSWYVVRNTPNVTGFLGSTGGGAKPIPLQPDEVTNVLSQMGL 120 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++ +E+G+ V V +G F +F G + ++ +K ++ V V +FGR T +EL + Q Sbjct: 121 IEKKDRY--NYELGDLVRVKEGAFENFEGTIDEIEADKEKLKVVVDMFGRETKIELDFEQ 178 Query: 173 VEKI 176 V+KI Sbjct: 179 VQKI 182 >gi|119714942|ref|YP_921907.1| transcription termination/antitermination factor NusG [Nocardioides sp. JS614] gi|119535603|gb|ABL80220.1| transcription antitermination protein nusG [Nocardioides sp. JS614] Length = 317 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 19/191 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++V YS E + ++ R+ ++ + EI +P+E V ++ G++ R PGY Sbjct: 127 WFVVHTYSGMENRVKSNLENRIISLNMEDYIHEIVVPTEEVAEIKNGQRKMVRRTVLPGY 186 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ +TD+ + ++ TP V GF+G P P++ SE+E+++ Sbjct: 187 VLVRMDLTDESWAAVRHTPSVTGFVGHSHQPVPLSMSEVENMLAPAVVARAEAEAVAAGA 246 Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 AA ++PV F+V + V V DGPFA+ + + ++ E RV V IFGR TP Sbjct: 247 PASSGGAAAKKPVEVADFDVSDSVMVVDGPFATLHATITEINAEAQRVKALVEIFGRETP 306 Query: 166 VELAYNQVEKI 176 VEL+++Q++++ Sbjct: 307 VELSFSQIQRV 317 >gi|294142945|ref|YP_003558923.1| transcription antitermination protein NusG [Shewanella violacea DSS12] gi|293329414|dbj|BAJ04145.1| transcription antitermination protein NusG [Shewanella violacea DSS12] Length = 185 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHYFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P+++ E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISNVEADRILQRLQENTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 FE GE V V+DGPFA F G V+ VD EK+RV V V+IFGR TP+E+ ++Q+ Sbjct: 129 MFEPGEVVSVADGPFADFRGAVEQVDYEKNRVKVSVMIFGRSTPLEVDFSQI 180 >gi|254517457|ref|ZP_05129513.1| transcription antitermination protein NusG [Clostridium sp. 7_2_43FAA] gi|226911206|gb|EEH96407.1| transcription antitermination protein NusG [Clostridium sp. 7_2_43FAA] Length = 173 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L L+ +I +P E VV + G++ S ++ FPG Sbjct: 6 RWYVVHTYSGYENKVKANLEKTIENRNLQSLLQDIQVPMEEVVEEKDGKQKISLKKKFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +MTD+ ++ +++T V GF+G P P+TD E+E + VQ + Sbjct: 66 YVLVKMLMTDESWYVVRNTRGVTGFVGPASKPVPLTDEEVESM------GVQEAPVEIDL 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVGE V V GP F I++ ++ EK ++ + +FGR T EL + QVEK+V Sbjct: 120 EVGESVRVISGPLREFVAIIQEINLEKRKIKALIDMFGRETLAELEFTQVEKLV 173 >gi|212702089|ref|ZP_03310217.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098] gi|212674494|gb|EEB34977.1| hypothetical protein DESPIG_00096 [Desulfovibrio piger ATCC 29098] Length = 191 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS--VRKGRKVNSERRFF 61 RWYIV YS E++ ++I + + L+ E+ +P+E+V+ + S R+F+ Sbjct: 17 RWYIVHTYSGFEQRVQKTIKAMMDSGEDNGLIQEVVVPTEKVIEPSKNGSQPRTSTRKFY 76 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I+ +MTD H ++ PKV GF+G P+P+++S+ I++ +E+ + P Sbjct: 77 PGYVMIRMIMTDLSCHLVQSIPKVTGFVGGKNRPTPMSESDAARILSLMESRQETPRPKF 136 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V +GPF FNG+V +V+ EK ++ V V IFGR TPVEL + QV K Sbjct: 137 NFERGDDVRVIEGPFEGFNGVVDDVNYEKGKLRVSVSIFGRQTPVELDFVQVSK 190 >gi|46200039|ref|YP_005706.1| transcription factor [Thermus thermophilus HB27] gi|55980217|ref|YP_143514.1| transcription antitermination protein NusG [Thermus thermophilus HB8] gi|548398|sp|P35872|NUSG_THET8 RecName: Full=Transcription antitermination protein nusG gi|348515|pir||A45281 transcription factor NusG - Thermus aquaticus gi|46197667|gb|AAS82079.1| transcription factor [Thermus thermophilus HB27] gi|55771630|dbj|BAD70071.1| transcription antitermination protein NusG [Thermus thermophilus HB8] Length = 184 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 8/183 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V E+KA ++ R+ GL + ++ IP+E VV +R+G +K ++ Sbjct: 1 MSIEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKK 60 Query: 60 FFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VEA 112 FPGY+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ + Sbjct: 61 LFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLG 120 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + P + V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++Q Sbjct: 121 KKEAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 180 Query: 173 VEK 175 V K Sbjct: 181 VVK 183 >gi|269798566|ref|YP_003312466.1| NusG antitermination factor [Veillonella parvula DSM 2008] gi|282849078|ref|ZP_06258466.1| transcription termination/antitermination factor NusG [Veillonella parvula ATCC 17745] gi|269095195|gb|ACZ25186.1| NusG antitermination factor [Veillonella parvula DSM 2008] gi|282581196|gb|EFB86591.1| transcription termination/antitermination factor NusG [Veillonella parvula ATCC 17745] Length = 178 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + + ++P +V Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVGE V ++ G F G++ ++ EK + + V +F R T VEL ++QVEK Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176 >gi|153952848|ref|YP_001393613.1| transcription antitermination protein NusG [Clostridium kluyveri DSM 555] gi|219853513|ref|YP_002470635.1| hypothetical protein CKR_0170 [Clostridium kluyveri NBRC 12016] gi|146345729|gb|EDK32265.1| NusG [Clostridium kluyveri DSM 555] gi|219567237|dbj|BAH05221.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 173 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + L + ++ +P E V ++ G+K + ++ FPG Sbjct: 6 KWYVVHTYSGYENKVKMNLEKTIENRELYDCIDDVQVPMEEQVEIKDGKKKITLKKIFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+ +MTD ++ +++T V GF+G G P P+TD E++ + + + +V Sbjct: 66 YVLVHMIMTDDSWYVVRNTRGVTGFVGPGSKPVPLTDEEVKDM------GINEKLVNVDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP +F +++ ++ EK +V V +FGR TPVEL +NQ+EKI Sbjct: 120 LVGENVKVRSGPLENFLAVIQEINIEKRKVKALVNMFGRETPVELDFNQIEKI 172 >gi|229586374|ref|YP_002844875.1| transcription antitermination protein NusG [Rickettsia africae ESF-5] gi|228021424|gb|ACP53132.1| Transcription antitermination protein NusG [Rickettsia africae ESF-5] Length = 192 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDMLRKIAKQNMTGFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190 >gi|295692220|ref|YP_003600830.1| transcription antitermination protein nusg [Lactobacillus crispatus ST1] gi|295030326|emb|CBL49805.1| Transcription antitermination protein nusG [Lactobacillus crispatus ST1] Length = 185 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D E+ ++ ++PV+ Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPVA 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|284106472|ref|ZP_06386258.1| transcription antitermination protein NusG [Candidatus Poribacteria sp. WGA-A3] gi|283830068|gb|EFC34339.1| transcription antitermination protein NusG [Candidatus Poribacteria sp. WGA-A3] Length = 179 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 3/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ Y+ E + S+ R ++ GL+ ++ +P+E V+ ++ G++ S+R+F Sbjct: 1 MAKNWYVIHTYAGYEGRVRTSLVERATQMGLEEEFGQVLVPTEDVIEIKDGKRRASKRKF 60 Query: 61 FPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ + D+ IK+TPKV GF+G P P+ E + ++ Q+E+ V P Sbjct: 61 FPGYVLVELEDPLRDETVVMIKETPKVTGFVGGEGVKPMPLPKEEADSLLKQIESGVSLP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VFF G+ V + DGPF FNG++ VD+E SR V V I GR TPVEL + Q+E+ Sbjct: 121 RERVFFSKGDNVRIVDGPFMGFNGLIDEVDDEHSRAKVLVSILGRATPVELVFAQIER 178 >gi|256844505|ref|ZP_05549991.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus 125-2-CHN] gi|256849107|ref|ZP_05554540.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US] gi|262047587|ref|ZP_06020542.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus MV-3A-US] gi|256613583|gb|EEU18786.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus 125-2-CHN] gi|256713883|gb|EEU28871.1| transcriptional antiterminator [Lactobacillus crispatus MV-1A-US] gi|260572163|gb|EEX28728.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus MV-3A-US] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D E+ ++ ++PV Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|291286300|ref|YP_003503116.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290883460|gb|ADD67160.1| NusG antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 174 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 3/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V YS EK+ V + ++ L + ++ IP+E V+ ++KG+K S+++ Sbjct: 1 MAKQWYVVHTYSGFEKRVVTLLEEKVKNEKLADQIDDVLIPTEDVIELKKGKKKVSKKKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+L+ M+ +H +K PKV GF+G +PV E + A + P + Sbjct: 61 FPGYILVHMEMSTTNWHVVKSIPKVTGFVGG---INPVPIPEHDVKAMIDLAKSESPRIA 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V DGPF F G V V+ +K +V V V IFGR TPVEL Y QV+++ Sbjct: 118 SKYVEGDTVEVIDGPFLGFTGTVDEVNPDKEKVRVIVSIFGRQTPVELDYLQVKRV 173 >gi|311029034|ref|ZP_07707124.1| transcription antitermination protein NusG [Bacillus sp. m3-13] Length = 177 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 109/179 (60%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E ++ G+K ++++ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVTKKKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ D EI I+ ++ ++ Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLDDEIAFILKRMGMMEKQV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++ E V V++GPFA+F G + +D++K +V V V +FGR TPVEL + Q+EK+ Sbjct: 121 --EVDFDLKESVKVTEGPFANFTGHIVEMDKDKHKVKVLVNMFGRETPVELDFTQIEKL 177 >gi|239980079|ref|ZP_04702603.1| putative transcription antitermination factor NusG [Streptomyces albus J1074] gi|291451933|ref|ZP_06591323.1| NusG protein [Streptomyces albus J1074] gi|291354882|gb|EFE81784.1| NusG protein [Streptomyces albus J1074] Length = 287 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 280 SFDQIQK 286 >gi|54296353|ref|YP_122722.1| transcription antitermination protein NusG [Legionella pneumophila str. Paris] gi|148361065|ref|YP_001252272.1| transcription antitermination protein NusG [Legionella pneumophila str. Corby] gi|296105866|ref|YP_003617566.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99 Alcoy] gi|53750138|emb|CAH11530.1| transcription antitermination protein NusG [Legionella pneumophila str. Paris] gi|148282838|gb|ABQ56926.1| transcription antitermination protein NusG [Legionella pneumophila str. Corby] gi|295647767|gb|ADG23614.1| transcriptional antiterminator NusG [Legionella pneumophila 2300/99 Alcoy] Length = 182 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E + I R L+ + E+ +PSE VV +R G+K S R+FF Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLEDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H ++ P+V+GF+G + P+P++D E + IM +VE V +P Sbjct: 67 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181 >gi|291447027|ref|ZP_06586417.1| transcription antitermination protein nusG [Streptomyces roseosporus NRRL 15998] gi|291349974|gb|EFE76878.1| transcription antitermination protein nusG [Streptomyces roseosporus NRRL 15998] Length = 294 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|325956072|ref|YP_004286682.1| transcription termination/antitermination factor NusG [Lactobacillus acidophilus 30SC] gi|325332637|gb|ADZ06545.1| transcription termination/antitermination factor NusG [Lactobacillus acidophilus 30SC] Length = 185 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E+E ++ + P + Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|150015031|ref|YP_001307285.1| transcription antitermination protein NusG [Clostridium beijerinckii NCIMB 8052] gi|149901496|gb|ABR32329.1| NusG antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 181 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L+ L+ +I +P E VV + G++ S ++ FPG Sbjct: 14 RWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFPG 73 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M D+ ++ +++T V GF+G G P P++D E+E + V + Sbjct: 74 YVLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEVPVEIDL 127 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVGE + + GP ++ + +K +V V +FGR T EL +NQVEK+V Sbjct: 128 EVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKLV 181 >gi|154486659|ref|ZP_02028066.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis L2-32] gi|154084522|gb|EDN83567.1| hypothetical protein BIFADO_00479 [Bifidobacterium adolescentis L2-32] Length = 274 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ G++ + ++ +P E V + K R PG Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G ++P+P+T E+ +M + A+ Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +N Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268 Query: 172 QVEKI 176 QVEK+ Sbjct: 269 QVEKL 273 >gi|296130513|ref|YP_003637763.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109] gi|296022328|gb|ADG75564.1| NusG antitermination factor [Cellulomonas flavigena DSM 20109] Length = 255 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 10/182 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + ++ +P E VV ++ ++ +R PGY Sbjct: 74 WYVIHSYAGYENRVKANLESRTQSLNMEDYIHQVEVPMEEVVEIKNAQRKVVKRVRIPGY 133 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +TD+ + ++ TP V GF+G P P+T E+ ++ Sbjct: 134 VLVRMDLTDESWGAVRHTPGVTGFVGHTHQPVPLTLDEVFSMLAPAIETKAPAQQAAKAS 193 Query: 117 -PVSSVFFEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V F VGE V V+D GPF + + ++ E ++ V V +FGR TPVEL+++QV Sbjct: 194 SKPVEVDFTVGESVTVTDGGPFDTLPATISEINPENQKLKVLVSLFGRETPVELSFSQVS 253 Query: 175 KI 176 KI Sbjct: 254 KI 255 >gi|307609126|emb|CBW98571.1| transcription antitermination protein NusG [Legionella pneumophila 130b] Length = 182 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H ++ P+V+GF+G + P+P++D E + IM +VE V +P Sbjct: 67 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181 >gi|297159567|gb|ADI09279.1| transcription antitermination protein nusG [Streptomyces bingchenggensis BCW-1] Length = 297 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 110 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRRTVRQNKLPGY 169 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 170 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEEAG 229 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 230 LPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 289 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 290 SFDQIQK 296 >gi|51473334|ref|YP_067091.1| transcription antitermination protein NusG [Rickettsia typhi str. Wilmington] gi|81692319|sp|Q68XN3|NUSG_RICTY RecName: Full=Transcription antitermination protein nusG gi|51459646|gb|AAU03609.1| transcription antitermination protein NusG (N utilization substance protein G) [Rickettsia typhi str. Wilmington] Length = 192 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+E++R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEVVTVTDGPFETFMGTVEEIDKERNRLKVSVSIFGKATPIELNFNQVKK 190 >gi|293381063|ref|ZP_06627084.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus 214-1] gi|312977941|ref|ZP_07789687.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus CTV-05] gi|290922363|gb|EFD99344.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus 214-1] gi|310895248|gb|EFQ44316.1| transcription termination/antitermination factor NusG [Lactobacillus crispatus CTV-05] Length = 185 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D E+ ++ ++PV Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 126 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|34580870|ref|ZP_00142350.1| transcription antitermination protein NusG [Rickettsia sibirica 246] gi|28262255|gb|EAA25759.1| transcription antitermination protein NusG [Rickettsia sibirica 246] Length = 192 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGVEKRIKEDMLRKIAKQNMTDFFEDILIPVFGVSEVKRGKDVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 190 >gi|327182886|gb|AEA31333.1| transcription termination/antitermination factor NusG [Lactobacillus amylovorus GRL 1118] Length = 185 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E+E ++ + P + Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|311063697|ref|YP_003970422.1| transcription antitermination protein NusG [Bifidobacterium bifidum PRL2010] gi|310866016|gb|ADP35385.1| NusG Transcription antitermination protein [Bifidobacterium bifidum PRL2010] Length = 280 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ GL+ + +I +P E V K R PG Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVTSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRIPG 154 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ ++ + A+ Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274 Query: 172 QVEKI 176 QVEK+ Sbjct: 275 QVEKL 279 >gi|217030|dbj|BAA01261.1| virginiae butanolide receptor [Streptomyces virginiae] Length = 319 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 132 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 191 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 192 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 251 Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 252 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 311 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 312 SFDQIQK 318 >gi|116327511|ref|YP_797231.1| transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331876|ref|YP_801594.1| transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120255|gb|ABJ78298.1| Transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125565|gb|ABJ76836.1| Transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 181 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q YS E K ++I + + L+ + ++ IP+ V ++ G+K ++R+ Sbjct: 3 TKKWYALQTYSGHENKVQKNIEKLVQQKKLEEKIFQVKIPTMDVAEMKNGKKKVTKRKLM 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPV 118 PGYVLI+ M D I+ P V F+G+ + E + + Sbjct: 63 PGYVLIEMEMDDDTRFLIQSLPSVSTFVGSKDGGPEPLSLEEVKNLFSESGDVASEEPVA 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F+VG+ + + DGPFA+F G+V + +K R+ V+V IFGR TPVEL Y QV+ Sbjct: 123 PKILFKVGDSLKIIDGPFANFTGLVDEIFPDKGRLRVKVEIFGRSTPVELDYLQVK 178 >gi|183221359|ref|YP_001839355.1| transcription antitermination protein NusG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911452|ref|YP_001963007.1| transcription antiterminator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776128|gb|ABZ94429.1| Transcription antiterminator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779781|gb|ABZ98079.1| Transcription antitermination protein NusG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 184 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 3/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++Q YS E K +I + + L+ + + IPS V ++ G+K ++++ P Sbjct: 7 KKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKLMP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ---VEAAVQRPVS 119 GYVL++ MTD + I++ P V F+G + + + + Sbjct: 67 GYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVSRP 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F+VGE + + DGPFA+F G+V + +K R+ V V IFGR TPVEL Y QV+ Sbjct: 127 RFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181 >gi|54293309|ref|YP_125724.1| transcription antitermination protein NusG [Legionella pneumophila str. Lens] gi|53753141|emb|CAH14588.1| transcription antitermination protein NusG [Legionella pneumophila str. Lens] Length = 182 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF Sbjct: 7 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H ++ P+V+GF+G + P+P++D E + IM +VE V +P Sbjct: 67 PGYVLVHMVMDDQTWHMVRAIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 127 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 181 >gi|291437861|ref|ZP_06577251.1| transcription antitermination protein nusG [Streptomyces ghanaensis ATCC 14672] gi|291340756|gb|EFE67712.1| transcription antitermination protein nusG [Streptomyces ghanaensis ATCC 14672] Length = 294 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 227 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|302559020|ref|ZP_07311362.1| transcription termination/antitermination factor NusG [Streptomyces griseoflavus Tu4000] gi|302476638|gb|EFL39731.1| transcription termination/antitermination factor NusG [Streptomyces griseoflavus Tu4000] Length = 285 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY Sbjct: 98 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 157 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 158 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 217 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 218 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 277 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 278 SFDQIQK 284 >gi|168187827|ref|ZP_02622462.1| transcription termination/antitermination factor NusG [Clostridium botulinum C str. Eklund] gi|169294323|gb|EDS76456.1| transcription termination/antitermination factor NusG [Clostridium botulinum C str. Eklund] Length = 173 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + + Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEVSAM------GISEKNVDIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+ Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINIEKQKIKALVNMFGRETPTELNFNQIEKL 172 >gi|167627264|ref|YP_001677764.1| transcription antitermination protein NusG [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667819|ref|ZP_04755397.1| transcription antitermination protein NusG [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876363|ref|ZP_05249073.1| transcription antitermination protein nusG [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597265|gb|ABZ87263.1| transcription antitermination protein NusG [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842384|gb|EET20798.1| transcription antitermination protein nusG [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 177 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 2/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV+S EK+ + + +GL I +P+E VV ++ G+K SER++FPGY Sbjct: 3 WYVVQVHSGYEKRVKTQLEENIEIAGLKENFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--QRPVSSVF 122 VLI+A +T + + IK P+V+ +G+ P P++ +E+E I+ VE + P Sbjct: 63 VLIEANLTTEAWDIIKAVPRVLTVVGSRGKPIPLSKAEVERILGFVEGSTSTVEPRLRKT 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 123 YHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >gi|118443261|ref|YP_877185.1| transcription antitermination protein NusG [Clostridium novyi NT] gi|118133717|gb|ABK60761.1| transcription termination/antitermination factor NusG [Clostridium novyi NT] Length = 173 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + GL L+ +I +P E VV V+ G+K ++++ FPG Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKDGKKKVTQKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + + Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKNVDIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+ Sbjct: 120 SVGESVKVISGPLNSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172 >gi|303228911|ref|ZP_07315722.1| transcription termination/antitermination factor NusG [Veillonella atypica ACS-134-V-Col7a] gi|303231237|ref|ZP_07317975.1| transcription termination/antitermination factor NusG [Veillonella atypica ACS-049-V-Sch6] gi|302514144|gb|EFL56148.1| transcription termination/antitermination factor NusG [Veillonella atypica ACS-049-V-Sch6] gi|302516437|gb|EFL58368.1| transcription termination/antitermination factor NusG [Veillonella atypica ACS-134-V-Col7a] Length = 178 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + + ++P +V Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++QVEK Sbjct: 124 VEVGETVRITSGAFEDRLGVITEINPEKGTLKLNVEMFNRDTEVEVEFSQVEK 176 >gi|326382994|ref|ZP_08204683.1| transcription antitermination protein NusG [Gordonia neofelifaecis NRRL B-59395] gi|326198130|gb|EGD55315.1| transcription antitermination protein NusG [Gordonia neofelifaecis NRRL B-59395] Length = 249 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E K ++ R+ + + ++ +P+E V ++ G+ R+ PGY Sbjct: 57 WYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGY 116 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS----- 119 +L++ + D+ + +++TP V GF+G PSP++ E+ + + + Sbjct: 117 ILVRMELNDESWSAVRNTPGVTGFVGMTSRPSPLSIKEVLQFLMPRAEVRKAEAAKAAAA 176 Query: 120 ----------------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 V FEVGE V V DGPFA+ + V+ E+ +V V V IFGR Sbjct: 177 AGESVEAAAAAASNLVEVDFEVGESVTVMDGPFATLPASISEVNTEQRKVKVLVSIFGRE 236 Query: 164 TPVELAYNQVEKI 176 TPVEL +NQVEK+ Sbjct: 237 TPVELGFNQVEKL 249 >gi|58336696|ref|YP_193281.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM] gi|227903259|ref|ZP_04021064.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC 4796] gi|58254013|gb|AAV42250.1| transcriptional antiterminator [Lactobacillus acidophilus NCFM] gi|227869064|gb|EEJ76485.1| transcriptional antiterminator NusG [Lactobacillus acidophilus ATCC 4796] Length = 185 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D E+ ++ + P Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLDEEVSRLLKNQGQPAKTPTE 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K Sbjct: 127 --DFDIGETVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180 >gi|328958748|ref|YP_004376134.1| transcription antitermination protein NusG [Carnobacterium sp. 17-4] gi|328675072|gb|AEB31118.1| transcription antitermination protein NusG [Carnobacterium sp. 17-4] Length = 182 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++I R + G+ + + IP E V+ G++ + ++ F Sbjct: 7 AKQWYVLHTYSGYENKVKQNIESRANSMGMGDYIFRVVIPEEEEKEVKNGKEKINMKKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +M+D ++ +++TP V GF+G+ G P+P+ +SEIE I+ ++ + Sbjct: 67 PGYVLVEMIMSDDSWYVVRNTPGVTGFVGSHGAGSKPAPLLNSEIEVILRRIGMSA--RH 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE V + +G F+ G + ++ EK+++ V V +FGR T EL + Q +K+ Sbjct: 125 QEINFEVGETVTIIEGAFSGLTGKITEIEMEKAKLKVNVEMFGRETSTELDFEQADKL 182 >gi|52840562|ref|YP_094361.1| transcription antitermination protein NusG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627673|gb|AAU26414.1| transcription antitermination protein NusG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 184 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF Sbjct: 9 AKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H ++ P+V+GF+G + P+P++D E + IM +VE V +P Sbjct: 69 PGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQTPTPISDKEAQAIMQRVEDGVTKPRPK 128 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 129 ILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 183 >gi|332042977|gb|EGI79175.1| transcription termination/antitermination factor NusG [Lacinutrix algicola 5H-3-7-4] Length = 184 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 111/179 (62%), Gaps = 4/179 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I ++R GL V ++ +P+E VV +R G+K+N E+ +F Sbjct: 6 EKKWYVVRAVSGQENKIKTYIENEIARLGLQDYVEQVLVPTENVVQIRNGKKINKEKVYF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY++IKA +T +V H IK VIGFLG G +P P+ SE+ ++ +V+ + Sbjct: 66 SGYIMIKANLTGEVPHIIKGITNVIGFLGATKGGDPLPLRQSEVNRMLGKVDELTVEADT 125 Query: 120 S--VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + + GE V V DGPF F+G ++N++EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 126 NVAIPYTKGETVKVIDGPFNGFDGTIENINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184 >gi|318056665|ref|ZP_07975388.1| transcription antitermination protein [Streptomyces sp. SA3_actG] gi|318079221|ref|ZP_07986553.1| transcription antitermination protein [Streptomyces sp. SA3_actF] Length = 303 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 116 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 175 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------------ 112 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 235 Query: 113 ----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 296 SFDQIQK 302 >gi|310286801|ref|YP_003938059.1| transcription antitermination factor NusG [Bifidobacterium bifidum S17] gi|309250737|gb|ADO52485.1| transcription antitermination factor NusG [Bifidobacterium bifidum S17] Length = 280 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ ++ + A+ Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274 Query: 172 QVEKI 176 QVEK+ Sbjct: 275 QVEKL 279 >gi|119025264|ref|YP_909109.1| transcription antitermination protein nusG [Bifidobacterium adolescentis ATCC 15703] gi|118764848|dbj|BAF39027.1| transcription antitermination protein nusG [Bifidobacterium adolescentis ATCC 15703] Length = 274 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ G++ + ++ +P E V + K R PG Sbjct: 89 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQVEVPMEEVEKHTEKGKKVITRVRVPG 148 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G ++P+P+T E+ +M + A+ Sbjct: 149 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLTRKEVVSMMAPMIASEALKAAGDKP 208 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + G++V V+DGPF + +V VD ++ V V IFGR TPVEL +N Sbjct: 209 AAAKKRKLEVSYAPGDQVTVTDGPFTTMAAVVSEVDPSTQKLTVLVSIFGRDTPVELGFN 268 Query: 172 QVEKI 176 QVEK+ Sbjct: 269 QVEKL 273 >gi|227363500|ref|ZP_03847620.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3] gi|227545179|ref|ZP_03975228.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A] gi|300909144|ref|ZP_07126605.1| transcription termination/antitermination factor NusG [Lactobacillus reuteri SD2112] gi|325681893|ref|ZP_08161411.1| transcription antitermination protein NusG [Lactobacillus reuteri MM4-1A] gi|227071437|gb|EEI09740.1| transcriptional antiterminator NusG [Lactobacillus reuteri MM2-3] gi|227184825|gb|EEI64896.1| transcriptional antiterminator NusG [Lactobacillus reuteri CF48-3A] gi|300893009|gb|EFK86368.1| transcription termination/antitermination factor NusG [Lactobacillus reuteri SD2112] gi|324978537|gb|EGC15486.1| transcription antitermination protein NusG [Lactobacillus reuteri MM4-1A] Length = 186 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + F Sbjct: 11 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 70 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ ++TP V GFL G G P+P+ E++ IM ++ + V Sbjct: 71 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMG--TETTV 128 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 S + + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q+ Sbjct: 129 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQI 183 >gi|297243309|ref|ZP_06927243.1| transcription antitermination protein [Gardnerella vaginalis AMD] gi|296888716|gb|EFH27454.1| transcription antitermination protein [Gardnerella vaginalis AMD] Length = 300 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 12/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG Sbjct: 115 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 174 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 YVLI+ + +++T V GF+G P+P++ E+ +M + A+ Sbjct: 175 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 234 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +N Sbjct: 235 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 294 Query: 172 QVEKIV 177 QVE IV Sbjct: 295 QVEPIV 300 >gi|296112479|ref|YP_003626417.1| transcription termination/antitermination protein NusG [Moraxella catarrhalis RH4] gi|295920173|gb|ADG60524.1| transcription termination/antitermination protein NusG [Moraxella catarrhalis RH4] gi|326561519|gb|EGE11862.1| transcription antitermination protein [Moraxella catarrhalis 7169] gi|326564354|gb|EGE14583.1| transcription antitermination protein [Moraxella catarrhalis 46P47B1] gi|326567989|gb|EGE18081.1| transcription antitermination protein [Moraxella catarrhalis BC7] gi|326570709|gb|EGE20743.1| transcription antitermination protein [Moraxella catarrhalis BC1] gi|326571264|gb|EGE21287.1| transcription antitermination protein [Moraxella catarrhalis BC8] gi|326573054|gb|EGE23027.1| transcription antitermination protein [Moraxella catarrhalis CO72] Length = 176 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FP Sbjct: 1 MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKCTMQQKLFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI M + +H ++ P + GF+G ENP+P+T E + I+N++ P Sbjct: 61 GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175 >gi|148543544|ref|YP_001270914.1| transcription antitermination protein nusG [Lactobacillus reuteri DSM 20016] gi|184152951|ref|YP_001841292.1| transcription antitermination protein NusG [Lactobacillus reuteri JCM 1112] gi|194468089|ref|ZP_03074075.1| NusG antitermination factor [Lactobacillus reuteri 100-23] gi|148530578|gb|ABQ82577.1| transcription antitermination protein nusG [Lactobacillus reuteri DSM 20016] gi|183224295|dbj|BAG24812.1| transcription antitermination protein NusG [Lactobacillus reuteri JCM 1112] gi|194452942|gb|EDX41840.1| NusG antitermination factor [Lactobacillus reuteri 100-23] Length = 180 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E + ++ R G++ + + +P E V V+ G+ + + F Sbjct: 5 EKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ ++TP V GFL G G P+P+ E++ IM ++ + V Sbjct: 65 PGYVLVEMVMTDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMG--TETTV 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 S + + G+ V V G FA+ V VD EK ++ V +FGR T EL ++Q+ Sbjct: 123 SDIDVKEGDTVKVIAGSFANMTAKVVEVDHEKQKIKATVEMFGRETAAELGFDQI 177 >gi|309389945|gb|ADO77825.1| transcription antitermination protein nusG [Halanaerobium praevalens DSM 2228] Length = 189 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS+ E+K ++ R++ +G++ + I +P+E+ + +KG+ ++R FPGY Sbjct: 20 WYVVHTYSSHERKVKANLEKRIASTGMEDSIFRILVPTEKKIEKKKGKDEVVKKRIFPGY 79 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +L++ M DK ++ +K+TP VIGF+ G P PV E++ I++ + ++ SV FE Sbjct: 80 ILLQMKMNDKSWYVVKNTPGVIGFVSGGTKPLPVAKEEVDAILSSMGEKAKKV--SVDFE 137 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +G++V V GPF F+G++K + E+ + + V +FGR TPVEL ++Q EK Sbjct: 138 IGDQVTVKHGPFEDFDGVIKEIHPEQGKAKILVSMFGRETPVELEFDQFEK 188 >gi|331268400|ref|YP_004394892.1| NusG antitermination factor [Clostridium botulinum BKT015925] gi|329124950|gb|AEB74895.1| NusG antitermination factor [Clostridium botulinum BKT015925] Length = 173 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + GL L+ +I +P E VV V++G+K ++++ FPG Sbjct: 6 RWYVVHTYSGYENKVKVNLEKTIENRGLHDLIHDIQVPMEEVVEVKEGKKKVTQKKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P+T+ E+ + + + Sbjct: 66 YVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLTEEEV------LAMGISEKTIDIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VGE V V GP SF +++ ++ EK ++ V +FGR TP EL +NQ+EK+ Sbjct: 120 SVGESVKVISGPLKSFVAVIQEINVEKQKIKALVNMFGRETPTELNFNQIEKL 172 >gi|297201705|ref|ZP_06919102.1| transcription termination/antitermination factor NusG [Streptomyces sviceus ATCC 29083] gi|197710922|gb|EDY54956.1| transcription termination/antitermination factor NusG [Streptomyces sviceus ATCC 29083] Length = 287 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY Sbjct: 100 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 160 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 219 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 220 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 279 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 280 SFDQIQK 286 >gi|298346273|ref|YP_003718960.1| transcription antitermination protein [Mobiluncus curtisii ATCC 43063] gi|304389961|ref|ZP_07371918.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657212|ref|ZP_07910096.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236334|gb|ADI67466.1| transcription antitermination protein [Mobiluncus curtisii ATCC 43063] gi|304326854|gb|EFL94095.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492315|gb|EFU81922.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 271 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ + +R P Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 GYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++ + Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199 Query: 122 ----------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 FEVG+ V ++ GPF + + + V+ E ++ V V IF R TP Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 260 VELNFNQVTKI 270 >gi|157964201|ref|YP_001499025.1| transcription antitermination protein NusG [Rickettsia massiliae MTU5] gi|157843977|gb|ABV84478.1| Transcription antitermination protein NusG [Rickettsia massiliae MTU5] Length = 193 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E + ++++ + +I IP V V++G+ V E++ P Sbjct: 19 KQWYVVHTASGAEKRIKEDMLRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 79 SYILIKMNMTDKSWHLVKNISGVTGFLGSKTTPKALTESEIQNIFNNLEAEAKEAKNSKL 138 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+EK+R+ V V IFG+ TP+EL +NQV+K Sbjct: 139 YEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVKK 191 >gi|483836|dbj|BAA04281.1| NusG [Streptomyces griseus subsp. griseus NBRC 13350] Length = 294 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 107 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPV++ Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVDV 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|302553509|ref|ZP_07305851.1| transcription termination/antitermination factor NusG [Streptomyces viridochromogenes DSM 40736] gi|302471127|gb|EFL34220.1| transcription termination/antitermination factor NusG [Streptomyces viridochromogenes DSM 40736] Length = 298 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNIKQNKLPGY 170 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 231 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 290 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 291 SFDQIQK 297 >gi|254495698|ref|ZP_05108615.1| transcription antitermination protein NusG [Legionella drancourtii LLAP12] gi|254355077|gb|EET13695.1| transcription antitermination protein NusG [Legionella drancourtii LLAP12] Length = 181 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E + I R L + E+ +PSE VV +R G+K S R+FF Sbjct: 6 SKQWYVVHAYSGYENFVMREITSRAVHHNLQDKIGEVVVPSEEVVEMRSGQKRKSTRKFF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL+ VM D+ +H I+ P+V+GF+G + P+P+TD E IM +VE V +P Sbjct: 66 PGYVLVNMVMDDQTWHMIRAIPRVLGFIGGTSQTPTPITDKEARAIMQRVEDGVTKPRPK 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V FE GE + V +GPF FNG+V+ V+ EK+R+ V V+IFGR TPVEL ++QVEK Sbjct: 126 VLFEPGEVIRVKEGPFVDFNGVVEEVNYEKNRLRVAVLIFGRSTPVELEFSQVEK 180 >gi|305679974|ref|ZP_07402784.1| transcription termination/antitermination factor NusG [Corynebacterium matruchotii ATCC 14266] gi|305660594|gb|EFM50091.1| transcription termination/antitermination factor NusG [Corynebacterium matruchotii ATCC 14266] Length = 291 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + +++TP V F+G N +PV ++ + Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213 Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 + + +P V +EVGE V + +GP AS + + +D E S+V V V I Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273 Query: 160 FGRVTPVELAYNQVEKI 176 FGR TPV+L ++Q++KI Sbjct: 274 FGRETPVDLTFDQIKKI 290 >gi|225020307|ref|ZP_03709499.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii ATCC 33806] gi|224947051|gb|EEG28260.1| hypothetical protein CORMATOL_00314 [Corynebacterium matruchotii ATCC 33806] Length = 291 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 24/197 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R+ ++ + E+ +P E+ + +R G++ +R+ PG Sbjct: 94 QWYIIQCYSGYENKVKANLDMRIQTLEVEDSIFEVVVPVEQALEIRDGKRKIVKRKLLPG 153 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + +++TP V F+G N +PV ++ + Sbjct: 154 YVLVRMNINDHAWSVVRETPGVTSFVGNEGNATPVKPRDVAKFLMPRDTKPVAESTQAAG 213 Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 + + +P V +EVGE V + +GP AS + + +D E S+V V V I Sbjct: 214 ETPEGEKVVAMPTDMAKPKVVVNYEVGEAVTILEGPLASVSATISKIDAENSKVEVLVSI 273 Query: 160 FGRVTPVELAYNQVEKI 176 FGR TPV+L ++Q++KI Sbjct: 274 FGRETPVDLTFDQIKKI 290 >gi|308233405|ref|ZP_07664142.1| transcription termination/antitermination factor NusG [Atopobium vaginae DSM 15829] gi|328943541|ref|ZP_08241006.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Atopobium vaginae DSM 15829] gi|327491510|gb|EGF23284.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Atopobium vaginae DSM 15829] Length = 181 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M WY++ YS E K + R+ GL+ + +I IP+E VV V+ ++ N E Sbjct: 1 MAKHWYVIHTYSGYENKVKSDLEHRIETYGLEDQIVDIKIPTEEVVQVKSDGKRKNVETN 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D + +++T V GF+G P+P+ SE +M + A+ ++ Sbjct: 61 VFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIDGKPAPLRRSEFNKMMRKSNASQEKVTP 120 Query: 120 S---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FEVG V V GP F G + V E ++ V + IFGR TPVEL NQVE Sbjct: 121 QSITTDFEVGMAVRVIQGPLEKFEGKITEVMVEAGKLKVSLTIFGRETPVELTMNQVE 178 >gi|290958181|ref|YP_003489363.1| transcription antitermination protein [Streptomyces scabiei 87.22] gi|260647707|emb|CBG70812.1| transcription antitermination protein [Streptomyces scabiei 87.22] Length = 294 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E V ++ G + + PGY Sbjct: 107 WYVIHTYAGYENRVKTNLEQRAVSLNVEDFIFQAEVPQEEVAQIKNGERKTIRQNKLPGY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 167 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 226 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 227 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 286 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 287 SFDQIQK 293 >gi|154500409|ref|ZP_02038447.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC 29799] gi|150270914|gb|EDM98197.1| hypothetical protein BACCAP_04076 [Bacteroides capillosus ATCC 29799] Length = 174 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E SI + + L+ E++IP E V + ER+ F Sbjct: 4 SAKWYVVHTYSGYENTVAASIEKAVENRNMHDLIQEVSIPLETVTEITDNGPKTVERKVF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K VMTD+ +H +++ GF+G+G P++D EI + V++ + Sbjct: 64 PGYVLVKMVMTDETWHLVRNVRGATGFVGSGNKAIPLSDEEIAAL------GVEKREVVI 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VG+ V ++DG S+ G V +D E +V + V +FGR TPVEL +QVE + Sbjct: 118 GYAVGDNVRITDGALKSYLGTVDEIDMEHEKVRIVVSMFGRETPVELDLDQVEPV 172 >gi|152990012|ref|YP_001355734.1| transcription antitermination protein NusG [Nitratiruptor sp. SB155-2] gi|151421873|dbj|BAF69377.1| transcriptional antitermination factor NusG [Nitratiruptor sp. SB155-2] Length = 176 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +QVYS EK ++I L + E+ +P+E V+ V+ G+K +ER Sbjct: 1 MAHKWYAIQVYSGSEKAVKKAIENLAEEENLKDRIKEVVVPTEDVIEVKSGKKKITERSI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV + ++ I+ PKV F+G + P+P++++++ IM + P Sbjct: 61 YPGYVFANMDLDIDLWQKIQSLPKVSRFIGESKKPTPISEADVRKIMEK-AEKKGAPKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + +E GE V +++GPFA+F G+V+ D E ++ + V IFGR TPVE+ Y QVEKI+ Sbjct: 120 ISYEPGEMVRITEGPFANFTGVVEEYDMEHGKLKLNVSIFGRSTPVEILYTQVEKII 176 >gi|224282356|ref|ZP_03645678.1| NusG antitermination factor [Bifidobacterium bifidum NCIMB 41171] gi|313139500|ref|ZP_07801693.1| transcription antitermination protein nusG [Bifidobacterium bifidum NCIMB 41171] gi|313132010|gb|EFR49627.1| transcription antitermination protein nusG [Bifidobacterium bifidum NCIMB 41171] Length = 280 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V K R PG Sbjct: 95 KWYVLHTYSGYEKRVKTNVESRVVSFGLEDKIFQIEVPMEEVDKHTDKGKKVITRVRVPG 154 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + +++T V GF+G ++P+P++ E+ ++ + A+ Sbjct: 155 YVLIRMWPDEDARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMLAPMIASEALKKAGDKP 214 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V + VG++V V DGPFA+ +V +V+ ++ V V IFGR TPVEL ++ Sbjct: 215 AAAKKRVVEVSYAVGDQVTVIDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFH 274 Query: 172 QVEKI 176 QVEK+ Sbjct: 275 QVEKL 279 >gi|325844403|ref|ZP_08168130.1| transcription termination/antitermination factor NusG [Turicibacter sp. HGF1] gi|325489077|gb|EGC91461.1| transcription termination/antitermination factor NusG [Turicibacter sp. HGF1] Length = 178 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+ Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQRP 117 FPGYVL++ + TD ++ +++TP V GFLG+ + E+ I+ ++ Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVMPILKKMGITSVEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+ Sbjct: 121 SLDI--QVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174 >gi|317133008|ref|YP_004092322.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315470987|gb|ADU27591.1| NusG antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 173 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 8/176 (4%) Query: 1 MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M+ +WY+V YS E K ++ + L ++ EI IP+E V ++ K ER Sbjct: 1 MSENAKWYVVHTYSGYENKVASNLQTIVENRSLQDVIQEIKIPTEMVTEIKDNVKREVER 60 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 + FPGYVL+K + D +H +++T V GF+G+G +P P+T+ E+E + + + Sbjct: 61 KTFPGYVLVKMELNDDTWHIVRNTRGVTGFVGSGSHPEPLTEKEVEAL------GMDKRT 114 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V + VG+ V + DGP F G V +D +K++V V V +FGR TPVEL QVE Sbjct: 115 VEVNYAVGDSVRIVDGPLDGFIGTVDTLDTDKNQVTVTVSMFGRETPVELELGQVE 170 >gi|68536954|ref|YP_251659.1| transcription antitermination protein NusG [Corynebacterium jeikeium K411] gi|68264553|emb|CAI38041.1| transcription antitermination protein [Corynebacterium jeikeium K411] Length = 316 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY Sbjct: 117 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 176 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 VL++ + D + ++DTP V F+G P+PV E+ + Sbjct: 177 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 236 Query: 108 ----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V +E GE V + GPFAS + + +D E +R+ V Sbjct: 237 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 296 Query: 158 VIFGRVTPVELAYNQVEKI 176 IFGR TPVEL ++QVEK+ Sbjct: 297 SIFGRETPVELEFDQVEKL 315 >gi|260579298|ref|ZP_05847181.1| transcription antitermination protein [Corynebacterium jeikeium ATCC 43734] gi|258602597|gb|EEW15891.1| transcription antitermination protein [Corynebacterium jeikeium ATCC 43734] Length = 322 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R G+D + E+ +P E VV +R G++ +R+ PGY Sbjct: 123 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVVELRDGKRKLVKRKLLPGY 182 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 VL++ + D + ++DTP V F+G P+PV E+ + Sbjct: 183 VLVRMSLDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETAKPQESEDGEEA 242 Query: 108 ----------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V +E GE V + GPFAS + + +D E +R+ V Sbjct: 243 ATGVDVSATGVATPPKPASEQVVVDYEEGESVTILSGPFASVSATISEIDTENNRLKAMV 302 Query: 158 VIFGRVTPVELAYNQVEKI 176 IFGR TPVEL ++QVEK+ Sbjct: 303 SIFGRETPVELEFDQVEKL 321 >gi|311744840|ref|ZP_07718636.1| transcription termination/antitermination factor NusG [Aeromicrobium marinum DSM 15272] gi|311311957|gb|EFQ81878.1| transcription termination/antitermination factor NusG [Aeromicrobium marinum DSM 15272] Length = 251 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 16/188 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS EK+ ++ R++ + + E+ +P+E V V+ G++ +R PGY Sbjct: 64 WYVIHTYSGMEKRVKANLENRITSLNAEDFIFEVVVPTEEVAEVKNGQRKLVKRTVLPGY 123 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV--- 121 VL++ +TD+ + ++ TP V GF+G P P++ +E+E ++ A ++ Sbjct: 124 VLVRMDLTDESWGVVRHTPSVTGFVGNAHQPVPLSLAEVEQMLAPAVEAEVAATAAAESP 183 Query: 122 -------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 F G+ V V DGPFA+ + + ++ + RV V IFGR TPVEL Sbjct: 184 DSQPAKTAKVEFADFSAGDSVMVVDGPFATLHATITEINVDSQRVKALVEIFGRETPVEL 243 Query: 169 AYNQVEKI 176 +++Q++K+ Sbjct: 244 SFSQIQKV 251 >gi|260102419|ref|ZP_05752656.1| transcription antitermination protein NusG [Lactobacillus helveticus DSM 20075] gi|260083787|gb|EEW67907.1| transcription antitermination protein NusG [Lactobacillus helveticus DSM 20075] gi|328462980|gb|EGF34788.1| transcription termination/antitermination factor NusG [Lactobacillus helveticus MTCC 5463] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R+ G+ + + +P E V +G+K E + FP Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E++ ++ ++P Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 127 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|1709422|sp|P27309|NUSG_STRVG RecName: Full=Transcription antitermination protein nusG; AltName: Full=Butanolide receptor gi|1217911|dbj|BAA09301.1| NusG like protein [Streptomyces virginiae] Length = 299 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEAG 231 Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 232 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 292 SFDQIQK 298 >gi|294787327|ref|ZP_06752580.1| transcription termination/antitermination factor NusG [Parascardovia denticolens F0305] gi|315227113|ref|ZP_07868900.1| transcription termination/antitermination factor NusG [Parascardovia denticolens DSM 10105] gi|294484683|gb|EFG32318.1| transcription termination/antitermination factor NusG [Parascardovia denticolens F0305] gi|315119563|gb|EFT82696.1| transcription termination/antitermination factor NusG [Parascardovia denticolens DSM 10105] Length = 305 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 12/185 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS EK+ ++ R+ GL+ V ++ IP E V + K R PGY Sbjct: 121 WYVLHTYSGYEKRVKTNVESRVQNFGLEDKVFQVEIPMEEVEKHTEKGKKIITRVRIPGY 180 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------EA 112 VLI+ D I++T V GF+GT P++ E+ +M + Sbjct: 181 VLIRMWDDDDARRIIRETEGVTGFVGTNREAVPLSRQEVVDMMAPMIRSQALKEAGDQPK 240 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 A ++ V F +GE V V+DGPFA+ G+V ++ E ++ V V IFGR TPVEL ++Q Sbjct: 241 AARQRKVEVVFSLGETVTVTDGPFATMTGVVSDLQPEAQKLTVLVNIFGRDTPVELGFSQ 300 Query: 173 VEKIV 177 VEKI+ Sbjct: 301 VEKII 305 >gi|303232391|ref|ZP_07319083.1| transcription termination/antitermination factor NusG [Atopobium vaginae PB189-T1-4] gi|302481475|gb|EFL44543.1| transcription termination/antitermination factor NusG [Atopobium vaginae PB189-T1-4] Length = 181 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M WY+V Y+ E K + R+ GL+ + +I IP+E VV ++ ++ + E Sbjct: 1 MAKHWYVVHTYAGYENKVKNDLQHRIETYGLEDQIVDIQIPTEEVVKIKNDGKRTSVEAN 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL++ + D + +++T V GF+G P+P+ SE +M + Sbjct: 61 AFPGYVLVRMEVDDNSWAVVRNTNGVTGFVGIEGKPTPLRRSEFNKMMRRANPTTPEAPQ 120 Query: 120 ---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG V V GP F G + V + +V V + IFGR TPVEL +Q+E I Sbjct: 121 RTVETEFEVGMTVRVVRGPLEKFEGKITEVMTDAGKVKVSLTIFGRETPVELTMDQIEII 180 Query: 177 V 177 V Sbjct: 181 V 181 >gi|293375376|ref|ZP_06621657.1| transcription termination/antitermination factor NusG [Turicibacter sanguinis PC909] gi|292645929|gb|EFF63958.1| transcription termination/antitermination factor NusG [Turicibacter sanguinis PC909] Length = 178 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY+VQ Y+ E K + ++ R+ + + + IP E+ V ++ G + R+ Sbjct: 1 MEKRWYVVQTYAGYENKVMTNLLKRIETMNMQEKIFRVLIPEEKEVKIKDGVRKEKMRKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD---SEIEHIMNQVEAAVQRP 117 FPGYVL++ + TD ++ +++TP V GFLG+ + E+ I+ ++ Sbjct: 61 FPGYVLVEMIDTDDSWYMVRNTPGVTGFLGSSGKGTRPVPLPTEEVVPILKKMGITSVEV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + +VG+RV V+ GPF+ G ++++D+E S+V V V +FGR TPVEL +NQ+ Sbjct: 121 SLDI--QVGQRVLVAAGPFSGQVGTIESIDQEHSKVSVLVDLFGRETPVELDFNQI 174 >gi|227879328|ref|ZP_03997193.1| transcriptional antiterminator NusG [Lactobacillus crispatus JV-V01] gi|227861072|gb|EEJ68726.1| transcriptional antiterminator NusG [Lactobacillus crispatus JV-V01] Length = 199 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 21 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEIEEKIFP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D E+ ++ ++PV Sbjct: 81 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQPAKKPV- 139 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 140 -VNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195 >gi|152973943|ref|YP_001373460.1| transcription antitermination protein NusG [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022695|gb|ABS20465.1| NusG antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 177 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177 >gi|302536235|ref|ZP_07288577.1| transcription termination/antitermination factor NusG [Streptomyces sp. C] gi|302445130|gb|EFL16946.1| transcription termination/antitermination factor NusG [Streptomyces sp. C] Length = 304 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKQAAEEAG 236 Query: 114 -----VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V+R + + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 237 LPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 296 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 297 SFDQIQK 303 >gi|311896608|dbj|BAJ29016.1| putative transcription antitermination protein [Kitasatospora setae KM-6054] Length = 315 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + +++ R ++ + E +P E VV ++ G + + PGY Sbjct: 132 WYVIHTYAGYENRVKQNLEQRSVSLNVEDYIFESQVPQEEVVQIKNGDRKTIRQNKLPGY 191 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +T + + +++TP V GF+G +P P+T E+ ++ Sbjct: 192 VLVRMDLTPESWGVVRNTPGVTGFVGNAYDPYPLTLDEVVKMLAPDVERAAAKEAGKASP 251 Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL+++Q Sbjct: 252 VRPVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQ 311 Query: 173 VEK 175 ++K Sbjct: 312 IQK 314 >gi|228989305|ref|ZP_04149296.1| Transcription antitermination protein nusG [Bacillus pseudomycoides DSM 12442] gi|229083416|ref|ZP_04215764.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-44] gi|228699849|gb|EEL52486.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-44] gi|228770383|gb|EEM18956.1| Transcription antitermination protein nusG [Bacillus pseudomycoides DSM 12442] Length = 177 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLTKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFDFELHETVRVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 177 >gi|291533635|emb|CBL06748.1| transcription antitermination protein nusG [Megamonas hypermegale ART12/1] Length = 175 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 99/175 (56%), Gaps = 3/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ ++ G++ + + +P E+ R G++ ER+ F Sbjct: 4 EKKWYVIHTYSGYENKVKANLERKIHSMGMEDKIFNVIVPVEKETEKRNGKEKVVERKIF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ ++ ++ ++ +++TP V GF+G+ P P+T+ E I+ + + + Sbjct: 64 PGYVLLEMIVDERSWYIVRNTPGVTGFVGSNTKPVPLTEEEANRILKAMGM---DKPTEL 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG++V ++ G F +F + +D KS++ V +FGR T +E ++Q+EKI Sbjct: 121 DVEVGDQVNITSGAFENFVATITEIDYSKSKIKGVVDMFGRETAIEADFDQIEKI 175 >gi|254442748|ref|ZP_05056224.1| transcription termination/antitermination factor NusG [Verrucomicrobiae bacterium DG1235] gi|198257056|gb|EDY81364.1| transcription termination/antitermination factor NusG [Verrucomicrobiae bacterium DG1235] Length = 191 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q SN E K + + ++ V E+ +P+E V V+ G+K R+F+PGY Sbjct: 12 WYVIQTLSNQEGKVKRYLDKFIKEDEMEEYVFEVLVPTETVTEVKNGKKTQLVRKFYPGY 71 Query: 65 VLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 + + D+ ++ +++T VI F+G G+ P+P+ SEI+ I++QVEAA + Sbjct: 72 AFVHMRLYDENGKLLNKPWYFVRETAGVINFVG-GDRPTPLKKSEIDTILSQVEAATGKE 130 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+GE V ++DGPF + NG + +D EK ++ V V IFGR TPVEL Y QVE++ Sbjct: 131 TPKVQFEIGEEVKITDGPFLNLNGRIDEIDPEKGKLKVSVSIFGRFTPVELEYWQVERL 189 >gi|323465883|gb|ADX69570.1| Transcription antitermination protein nusG [Lactobacillus helveticus H10] Length = 199 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 21 KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ ++ +++TP V GF+ G G PSP+ E++ ++ ++P Sbjct: 81 GYVLVEMVMTDESWYIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 140 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 141 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 195 >gi|326566153|gb|EGE16309.1| transcription antitermination protein [Moraxella catarrhalis 103P14B1] gi|326566163|gb|EGE16318.1| transcription antitermination protein [Moraxella catarrhalis 12P80B1] gi|326577248|gb|EGE27141.1| transcription antitermination protein [Moraxella catarrhalis 101P30B1] gi|326577813|gb|EGE27681.1| transcription antitermination protein [Moraxella catarrhalis O35E] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+Q +S E + S+ R+ RS E+ +P+E VV +R+G+K +++ FP Sbjct: 1 MRWYIIQAFSGYENQVQRSLVERIKRSEFADKFGEVLVPTEEVVEMREGKKYTMQQKLFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI M + +H ++ P + GF+G ENP+P+T E + I+N++ P Sbjct: 61 GYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKTGDAPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPF F G+VK VD +KS++H+ V +F R T VEL +N+VEKI Sbjct: 121 MFEPGEEVLVIDGPFTDFKGLVKKVDYDKSKLHLTVSVFNRPTEVELEFNKVEKI 175 >gi|163787866|ref|ZP_02182313.1| elongation factor Tu [Flavobacteriales bacterium ALC-1] gi|159877754|gb|EDP71811.1| elongation factor Tu [Flavobacteriales bacterium ALC-1] Length = 181 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 4/179 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I +SR GL+ V ++ +P+E+V+ +R G+K+N E+ +F Sbjct: 3 EKKWYVVRAVSGQENKIKTYIENEISRLGLEDFVDQVLVPTEKVIQIRNGKKINKEKVYF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA--AVQRP 117 PGY++I+A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V+ Sbjct: 63 PGYIMIQANLSGEIPHIIKSITNVIGFLGETKGGDPVPLRQSEVNRMLGKVDELAIEADA 122 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F GE V V DGPF F+G ++ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 123 NVAIPFTKGETVKVIDGPFNGFDGTIEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 181 >gi|15604011|ref|NP_220526.1| transcription antitermination protein NusG [Rickettsia prowazekii str. Madrid E] gi|1709419|sp|P50056|NUSG_RICPR RecName: Full=Transcription antitermination protein nusG gi|987968|emb|CAA90886.1| transcription antitermination factor NusG [Rickettsia prowazekii] gi|3860702|emb|CAA14603.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (nusG) [Rickettsia prowazekii] gi|292571729|gb|ADE29644.1| Transcription antitermination protein NusG [Rickettsia prowazekii Rp22] Length = 192 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V S EK+ E I ++++ + +I IP V V++G+ V E++ P Sbjct: 18 KQWYVVHTASGAEKRIKEDILRKIAKQKMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I N +EA + +S Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKIVPKALTESEIQNIFNNLEAEAKVAKNSKL 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V+DGPF +F G V+ +D+ ++R+ V V IFG+ TP+EL +NQV+K Sbjct: 138 YEVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVKK 190 >gi|149372370|ref|ZP_01891558.1| transcription anti-termination protein [unidentified eubacterium SCB49] gi|149354760|gb|EDM43323.1| transcription anti-termination protein [unidentified eubacterium SCB49] Length = 184 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY+V+ S E K + ++R L + +I +P+E+V+ VR G+KV ER FF Sbjct: 7 TKKWYVVRSVSGQENKIKSYLESEITRLNLADYIEQILVPTEKVIQVRNGKKVQKERVFF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118 PGY++++A + ++ H IK VIGFLG G +P P+ +E+ ++ +V+ AVQ Sbjct: 67 PGYIMVQASLAGEIPHIIKSINGVIGFLGETKGGDPVPLRQAEVNRMLGKVDELAVQDDS 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ + +GE V V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 127 VNIPYTIGETVKVVDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184 >gi|145220413|ref|YP_001131122.1| transcription antitermination protein nusG [Prosthecochloris vibrioformis DSM 265] gi|145206577|gb|ABP37620.1| transcription antitermination protein nusG [Chlorobium phaeovibrioides DSM 265] Length = 191 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 103/173 (59%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY +++YS E+K E I + RSGL + ++ +P ER + V+ G+K + FPG Sbjct: 17 RWYALRIYSGHERKVKEGIEAEVERSGLGDKILQVYVPYERFIEVKNGKKRAMTKNAFPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ A +R V + Sbjct: 77 YVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPESAVTERTVVEAPY 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ + Sbjct: 137 NVGDSVKVIDGPFSSLAGVVHEVCPERMKVKVMISFFGRSTPTELDFSQVKSV 189 >gi|325108569|ref|YP_004269637.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324968837|gb|ADY59615.1| NusG antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 199 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+++V SN EK +S+ R+ R ++ EI IP+E+VV + G+K E+R + Sbjct: 24 EMRWYVLKVQSNREKSIRDSLNRRIKRDHMEDYFGEIIIPTEKVVETKGGKKRVREQRLY 83 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 PGY++I+ ++ D ++ ++DT V F G P P+ D EI ++ E+ P Sbjct: 84 PGYIMIQMILNDDSWYLVRDTGGVGDFTGAAGKPIPMQDQEIARMLGAEESKQAEPTKVK 143 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VG+ V + +G F SF G ++ +DE ++ V + IFGR TPVEL + QVEKI Sbjct: 144 IDLAVGDTVKIGEGTFESFEGSIEAIDEASGKISVLIEIFGRPTPVELEHWQVEKI 199 >gi|238018607|ref|ZP_04599033.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748] gi|237865078|gb|EEP66368.1| hypothetical protein VEIDISOL_00442 [Veillonella dispar ATCC 17748] Length = 178 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + + ++P ++ Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPSINID 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176 >gi|198277431|ref|ZP_03209962.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135] gi|198269929|gb|EDY94199.1| hypothetical protein BACPLE_03650 [Bacteroides plebeius DSM 17135] Length = 180 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + L V+++ IP+E+ VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKENKVKEYLDADIKHGNLGDYVSQVLIPTEKTYQVRNGKKIVKERTYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG ++P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGLDHPVPLRQSEVNRILGTVDELQESGEDLN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V VS GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK Sbjct: 125 IPYTVGETVKVSVGPFSGFSGLIEEVNAEKRKLKVMVKIFGRKTPLELGFTDVEK 179 >gi|283783657|ref|YP_003374411.1| transcription termination/antitermination factor NusG [Gardnerella vaginalis 409-05] gi|298252884|ref|ZP_06976678.1| transcription antitermination protein [Gardnerella vaginalis 5-1] gi|283441617|gb|ADB14083.1| transcription termination/antitermination factor NusG [Gardnerella vaginalis 409-05] gi|297533248|gb|EFH72132.1| transcription antitermination protein [Gardnerella vaginalis 5-1] Length = 298 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 12/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG Sbjct: 113 KWYVLHTYSGYEKRVKTNVESRVQNFGLEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 172 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 YVLI+ + +++T V GF+G P+P++ E+ +M + A+ Sbjct: 173 YVLIRMWPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASEALKNAGDKP 232 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V ++VG++V V+DGPF++ +V +V+ ++ V V IFGR TPVEL +N Sbjct: 233 AAARKRKVEVAYKVGDQVTVTDGPFSTMAAVVSDVEPTTQKLTVLVSIFGRETPVELGFN 292 Query: 172 QVEKIV 177 QVE IV Sbjct: 293 QVEPIV 298 >gi|269977529|ref|ZP_06184498.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris 28-1] gi|269934284|gb|EEZ90849.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris 28-1] Length = 264 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P Sbjct: 74 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 133 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120 GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + + Sbjct: 134 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 193 Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 FEVG+ V ++ GPF + + + + S++ V V IF R TPV Sbjct: 194 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 253 Query: 167 ELAYNQVEKIV 177 EL ++QVEKI+ Sbjct: 254 ELNFDQVEKIL 264 >gi|154148460|ref|YP_001407185.1| transcription antitermination protein NusG [Campylobacter hominis ATCC BAA-381] gi|153804469|gb|ABS51476.1| transcription termination/antitermination factor NusG [Campylobacter hominis ATCC BAA-381] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I + GL+ + EI +P+E ++ ++ ++ R Sbjct: 1 MALKWYAIQTYAGSEMAVKRAIESMATDLGLEEQIGEILVPTEDIIEIKNQKETIRSRSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + PSP+++ +I I+ +V P Sbjct: 61 YPGYCFANLDLDTALWHRIQMLPKVSRFIGEAKRPSPLSEKDINLILEKV-NKKDAPKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 ++FE GE V + DGPFA+FNGIV+ D ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 120 IYFEQGETVRIIDGPFANFNGIVEEYDMLHGKLRLNVSIFGRSTPVEILYSQVEKIV 176 >gi|189465406|ref|ZP_03014191.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM 17393] gi|189437680|gb|EDV06665.1| hypothetical protein BACINT_01759 [Bacteroides intestinalis DSM 17393] Length = 180 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ S Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDATEELS 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|146299698|ref|YP_001194289.1| NusG antitermination factor [Flavobacterium johnsoniae UW101] gi|146154116|gb|ABQ04970.1| transcription antitermination protein nusG [Flavobacterium johnsoniae UW101] Length = 183 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K I ++R G++ V+++ +P+E+VV+V++G+K++ ++ +FP Sbjct: 7 KKWYVVRAVSGQENKVKAYIETEIARLGMEDYVSQVLVPTEKVVTVKEGKKMSKDKVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119 GYV+I+A + ++ H IK VIGFLG G P P+ SE+ ++ +V+ AV Sbjct: 67 GYVMIEANLVGEIPHIIKSITSVIGFLGEIKGGEPVPLRLSEVNRMLGKVDELAVNTDTR 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+ Sbjct: 127 SIPFSLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183 >gi|116514973|ref|YP_802602.1| hypothetical protein BCc_024 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256827|gb|ABJ90509.1| transcription antitermination protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 180 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++Q +S E + ++SI + + ++ IPSE V+ ++KG++ S+ +FFP Sbjct: 6 KKWYVLQTFSGFENQVLQSIINNEKIKKMKEIFGKVIIPSEEVIEIKKGKRKKSDYKFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+LI +M + +H IK+ PKV+GF+G+ E P+PV + EI I+++++ +P Sbjct: 66 GYILIHMIMNNYSWHIIKNLPKVLGFIGSSSEQPTPVNNHEINLILDKLKKIGDKPRPKK 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF+ FNGIV+ +D EK+R+ V V IFGR TPVEL + QVEK Sbjct: 126 IFEPGENVRVNDGPFSDFNGIVETIDYEKNRLKVSVSIFGRSTPVELDFRQVEK 179 >gi|91205973|ref|YP_538328.1| transcription antitermination protein NusG [Rickettsia bellii RML369-C] gi|157826663|ref|YP_001495727.1| transcription antitermination protein NusG [Rickettsia bellii OSU 85-389] gi|122425301|sp|Q1RHC5|NUSG_RICBR RecName: Full=Transcription antitermination protein nusG gi|91069517|gb|ABE05239.1| Transcription antitermination protein NusG [Rickettsia bellii RML369-C] gi|157801967|gb|ABV78690.1| transcription antitermination protein NusG [Rickettsia bellii OSU 85-389] Length = 190 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY++ S E + + R+S+ + +I +P V V++ + V E++ Sbjct: 17 TKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLM 76 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+LIK MTDK +H +K+ P V GFLG+ P +T+SEI++I ++E + + Sbjct: 77 PSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNI--RLETEAKEAKDAK 134 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V++GPF +F G V+ VD+EK+R+ V V IFG+ TP+EL++ QV+K Sbjct: 135 LYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >gi|169333758|ref|ZP_02860951.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM 17244] gi|169259607|gb|EDS73573.1| hypothetical protein ANASTE_00142 [Anaerofustis stercorihominis DSM 17244] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 98/171 (57%), Gaps = 5/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+ YS E K E+I + R + ++ E+ +P +V + G + E++ FPGY Sbjct: 19 WYVAHTYSGYENKVKENIEAAVIRRNMSDIIEEVVVPMHKVEETKNGERKVVEKKVFPGY 78 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+K MTD ++ +++T V GF+G P P+T+ E+ + +++ + + Sbjct: 79 VLVKMYMTDDAWYIVRNTRGVTGFVGPASKPVPLTEEEL-----RNLGIIEKETITTDLK 133 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VG+ + V GPF S+ G+++ ++ +K+++ V + +FGR TPVEL + QV K Sbjct: 134 VGDEIEVLSGPFESYTGVIEEINIDKAKLKVNISMFGRETPVELDFTQVSK 184 >gi|269219033|ref|ZP_06162887.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 848 str. F0332] gi|269212144|gb|EEZ78484.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 848 str. F0332] Length = 274 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 13/185 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS EK+ + + R+ ++ + +I +P E V +R+G++ R PG Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 YVLI+ +TD + ++ T V GF+G G P ++++E+ ++ V A Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAG 207 Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 P + + VG+ V ++ P+A V VD R+ V + + G+ TPVEL++ Sbjct: 208 KAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSF 267 Query: 171 NQVEK 175 NQV K Sbjct: 268 NQVRK 272 >gi|483834|dbj|BAA04282.1| NusG [Streptomyces coelicolor A3(2)] Length = 300 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P + VV ++ G + + PGY Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQKEVVQIKNGDRKTIRQNKLPGY 172 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 173 VLVRMDYTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 293 SFDQIQK 299 >gi|313893043|ref|ZP_07826620.1| transcription termination/antitermination factor NusG [Veillonella sp. oral taxon 158 str. F0412] gi|313442396|gb|EFR60811.1| transcription termination/antitermination factor NusG [Veillonella sp. oral taxon 158 str. F0412] Length = 178 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K ++ ++ GL +++ I +P E + + G K +R+ FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ + D+ ++ +++TP V GF+G+ P P++DSE+EHI+ + + ++P +V Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHIL-KSQGLDKKPTINVD 123 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVGE V ++ G F G++ ++ EK + + V +F R T VE+ ++Q+EK Sbjct: 124 VEVGETVRITSGAFEDKLGVITELNPEKGTLKLNVEMFNRDTEVEVEFSQIEK 176 >gi|237666465|ref|ZP_04526450.1| transcription termination/antitermination factor NusG [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657664|gb|EEP55219.1| transcription termination/antitermination factor NusG [Clostridium butyricum E4 str. BoNT E BL5262] Length = 182 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L+ L+ +I +P E V+ + G++ S ++ FPG Sbjct: 15 RWYVVHTYSGYENKVKANLEKAIENRNLESLIQDIQVPMEEVIEEKDGKQKVSLKKKFPG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++T V GF+G G P P++D E+E + V + Sbjct: 75 YVLVKMLMSDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVESM------GVLEMPVDIDL 128 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVGE + + GP ++ + EK ++ V +FGR T EL +NQVEK+V Sbjct: 129 EVGESIKIISGPLRDSVATIQEIVLEKRKIKALVDMFGRETLAELDFNQVEKLV 182 >gi|319900912|ref|YP_004160640.1| transcription antitermination protein nusG [Bacteroides helcogenes P 36-108] gi|319415943|gb|ADV43054.1| transcription antitermination protein nusG [Bacteroides helcogenes P 36-108] Length = 180 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQESGEDLN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|315654868|ref|ZP_07907773.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii ATCC 51333] gi|315490829|gb|EFU80449.1| transcription termination/antitermination factor NusG [Mobiluncus curtisii ATCC 51333] Length = 271 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS+ EK+ ++I R++ + G++ V ++ IP E V V+ + +R P Sbjct: 80 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEDYVYQVEIPMEEHVEVKPKSRKVVQRPRIP 139 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 GYVL++ M + + +KDTP V GF+G ++P P+T +E+ +++ + Sbjct: 140 GYVLVRMDMDENSWRLVKDTPAVTGFVGNQQDPLPLTLTEVVNMLAPTAKEAAKVAVEDG 199 Query: 122 ----------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 FEVG+ V ++ GPF + + + V+ E ++ V V IF R TP Sbjct: 200 QVEISQATQRTAPVAADFEVGQSVTITSGPFETLSATIAEVNAETQKLTVLVTIFERETP 259 Query: 166 VELAYNQVEKI 176 VEL +NQV KI Sbjct: 260 VELNFNQVTKI 270 >gi|229542219|ref|ZP_04431279.1| NusG antitermination factor [Bacillus coagulans 36D1] gi|229326639|gb|EEN92314.1| NusG antitermination factor [Bacillus coagulans 36D1] Length = 177 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E + V+ +K +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKTNLEKRVESMGMQDKIFRVVVPEEEELEVKNEKKKVVKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G G P+P+ EI I+ ++ ++ Sbjct: 61 FPGYVLVEMVMTDDSWYVVRNTPGVTGFVGSSGGGSKPTPLLPEEINTILKRMG--MEEK 118 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + V FE+GE V V +GPFA+F G + +D +K R V V +FGR TPVEL + Q++KI Sbjct: 119 RADVDFEIGETVTVKEGPFANFAGKIVEMDRDKGRAKVMVNMFGRDTPVELVFEQIDKI 177 >gi|307701857|ref|ZP_07638870.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris FB024-16] gi|307612972|gb|EFN92228.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris FB024-16] Length = 280 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120 GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + + Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209 Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 FEVG+ V ++ GPF + + + + S++ V V IF R TPV Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269 Query: 167 ELAYNQVEKIV 177 EL ++QVEKI+ Sbjct: 270 ELNFDQVEKIL 280 >gi|303239009|ref|ZP_07325539.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2] gi|302593347|gb|EFL63065.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2] Length = 177 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K ++ + + + +I +P E + ++ G+K + ++ FPG Sbjct: 11 KWYVVHTYSGYENKVKANLEKIVENRSMQEYILDIVVPMEEQIEIKDGKKKATLKKVFPG 70 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +M+D+ ++ +++ V GF+G G P P++D E+ V+ + + + Sbjct: 71 YVLVKMIMSDESWYVVRNCRGVTGFVGPGSKPVPLSDEEVR------VMGVEEFMPVLDY 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V+ GP +F GIV+ ++ EK +V V V +FGR TPVEL Q++KI Sbjct: 125 EVGDNVRVATGPLENFIGIVEEINFEKKKVRVSVSMFGRETPVELELFQIQKI 177 >gi|53715482|ref|YP_101474.1| transcription anti-termination protein [Bacteroides fragilis YCH46] gi|60683455|ref|YP_213599.1| putative transcription antitermination protein [Bacteroides fragilis NCTC 9343] gi|253566653|ref|ZP_04844106.1| transcription anti-termination protein [Bacteroides sp. 3_2_5] gi|255011630|ref|ZP_05283756.1| putative transcription antitermination protein [Bacteroides fragilis 3_1_12] gi|265767531|ref|ZP_06095197.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_16] gi|313149465|ref|ZP_07811658.1| transcription anti-termination protein [Bacteroides fragilis 3_1_12] gi|52218347|dbj|BAD50940.1| transcription anti-termination protein [Bacteroides fragilis YCH46] gi|60494889|emb|CAH09696.1| putative transcription antitermination protein [Bacteroides fragilis NCTC 9343] gi|251944825|gb|EES85300.1| transcription anti-termination protein [Bacteroides sp. 3_2_5] gi|263252836|gb|EEZ24348.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_16] gi|301164939|emb|CBW24500.1| putative transcription antitermination protein [Bacteroides fragilis 638R] gi|313138232|gb|EFR55592.1| transcription anti-termination protein [Bacteroides fragilis 3_1_12] Length = 180 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVSHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQETGEDLN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 VPYIVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|227874727|ref|ZP_03992882.1| transcription antitermination protein nusG [Mobiluncus mulieris ATCC 35243] gi|306818026|ref|ZP_07451759.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris ATCC 35239] gi|227844693|gb|EEJ54847.1| transcription antitermination protein nusG [Mobiluncus mulieris ATCC 35243] gi|304649207|gb|EFM46499.1| transcription termination/antitermination factor NusG [Mobiluncus mulieris ATCC 35239] Length = 280 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V YS+ EK+ ++I R++ + G++ + ++ IP E + V+ + R P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120 GYVL++ M + + +KDTP V GF+G ++P P+T E+ ++ A + + Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209 Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 FEVG+ V ++ GPF + + + + S++ V V IF R TPV Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269 Query: 167 ELAYNQVEKIV 177 EL ++QVEKI+ Sbjct: 270 ELNFDQVEKIL 280 >gi|329962254|ref|ZP_08300260.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328530362|gb|EGF57239.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 180 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQEAGEDLN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFTGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|289450232|ref|YP_003475548.1| transcription termination/antitermination factor NusG [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184779|gb|ADC91204.1| transcription termination/antitermination factor NusG [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 180 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 99/173 (57%), Gaps = 6/173 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K +++ + GL + E+++P E V ++ G+K +++ +PGY Sbjct: 14 WYVIHTYSGYENKVKDTLEQIVENRGLQDYIQEVSVPVEEQVEIKDGKKKVVQKKLYPGY 73 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+K ++TD++++ +++T V GF+G + E IM ++ + + Sbjct: 74 VLVKMILTDEMWYIVRNTRGVTGFVGPNK--PVPLSEEELAIMGLLKDWD----PVIDYA 127 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VG+ V V +GP SF G V+ ++ EK +V V V +FGR TPVEL + QV +++ Sbjct: 128 VGDSVKVINGPLESFIGTVEEINMEKKKVRVLVSMFGRETPVELEFTQVLRLL 180 >gi|160888411|ref|ZP_02069414.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492] gi|270294764|ref|ZP_06200965.1| transcription termination/antitermination factor NusG [Bacteroides sp. D20] gi|317477763|ref|ZP_07936956.1| transcription termination/antitermination factor NusG [Bacteroides sp. 4_1_36] gi|156862088|gb|EDO55519.1| hypothetical protein BACUNI_00824 [Bacteroides uniformis ATCC 8492] gi|270274011|gb|EFA19872.1| transcription termination/antitermination factor NusG [Bacteroides sp. D20] gi|316906108|gb|EFV27869.1| transcription termination/antitermination factor NusG [Bacteroides sp. 4_1_36] Length = 180 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + S Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQESGEDLS 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|212213263|ref|YP_002304199.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212] gi|212218059|ref|YP_002304846.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154] gi|215918918|ref|NP_819269.2| transcription termination/antitermination factor NusG [Coxiella burnetii RSA 493] gi|206583803|gb|AAO89783.2| transcription antitermination protein [Coxiella burnetii RSA 493] gi|212011673|gb|ACJ19054.1| transcription antitermination protein [Coxiella burnetii CbuG_Q212] gi|212012321|gb|ACJ19701.1| transcription antitermination protein [Coxiella burnetii CbuK_Q154] Length = 188 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP Sbjct: 21 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V Sbjct: 81 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187 >gi|172039966|ref|YP_001799680.1| transcription antitermination protein NusG [Corynebacterium urealyticum DSM 7109] gi|171851270|emb|CAQ04246.1| transcription antitermination protein [Corynebacterium urealyticum DSM 7109] Length = 294 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 26/198 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R G+D + E+ +P E V ++ G++ +R+ PGY Sbjct: 96 WYIIQCYSGYENKVKTNLEMRAQTLGVDEQIHEVVVPIEEVTELKDGKRKQVKRKLLPGY 155 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 VL++ + D + ++DTP V F+G P+PV E+ + Sbjct: 156 VLVRIELDDASWSVVRDTPGVTSFVGNEGKPTPVKIREVAKFLLPPETATAAAEDQGQDA 215 Query: 108 ---------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 V V +EVGE V + GPFAS + +D ++R+ V Sbjct: 216 ADVDVSATGVAVPPKPASETVEVDYEVGESVTILSGPFASVAATISEIDTVQNRLKAMVS 275 Query: 159 IFGRVTPVELAYNQVEKI 176 IFGR TPVEL ++QV K+ Sbjct: 276 IFGRETPVELEFDQVAKL 293 >gi|237786433|ref|YP_002907138.1| transcription antitermination protein NusG [Corynebacterium kroppenstedtii DSM 44385] gi|237759345|gb|ACR18595.1| transcription antitermination protein [Corynebacterium kroppenstedtii DSM 44385] Length = 353 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 26/198 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYIVQ YS E K + R G+D + E+ +P E V V+ G++ + + PGY Sbjct: 155 WYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPGY 214 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM-------NQVEAAVQRP 117 VL++ + D + I+DTP + F+G +P+PV E+ + + E + P Sbjct: 215 VLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEEP 274 Query: 118 -------------------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 V +EVGE V V GPFAS + + +D E S++ V Sbjct: 275 AAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALVS 334 Query: 159 IFGRVTPVELAYNQVEKI 176 IFGR TPVEL ++QVEKI Sbjct: 335 IFGRETPVELDFDQVEKI 352 >gi|229824601|ref|ZP_04450670.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271] gi|229785972|gb|EEP22086.1| hypothetical protein GCWU000282_01948 [Catonella morbi ATCC 51271] Length = 179 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++ YS E K E+I R + + I +P E VV G + + Sbjct: 1 MSKEWYVLHTYSGYENKVKENIEMRTESMNMQDHIFRIAVPEEEVVEKTDGVEKKKVEKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ M+D+ + +++TP V GF+G+ G PSP+ EI I+ QR Sbjct: 61 FPGYVLVEMEMSDEAWFIVRNTPGVTGFVGSHGAGSKPSPLLPEEIAAILGDAPMPSQRV 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +V E G+ V + DG F+ +G ++ +D + ++ V + +FGR T EL + QV+K Sbjct: 121 ELNV--EEGDYVSIIDGAFSGLSGQIEEIDRDHDKLKVVIEMFGRETVAELDFVQVKK 176 >gi|221194673|ref|ZP_03567730.1| transcription termination/antitermination factor NusG [Atopobium rimae ATCC 49626] gi|221185577|gb|EEE17967.1| transcription termination/antitermination factor NusG [Atopobium rimae ATCC 49626] Length = 184 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 7/180 (3%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG----RKVNS 56 M RWY++ YS E K + + R+ GL V ++ P E V V+K Sbjct: 1 MAKRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTK 60 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 E +F+PGYVL++ + D + +++TP V GFLG PSP+ E +M + Sbjct: 61 EVKFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADA 120 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + EVG+ V V GP A F+GIV V+ E ++ V + IFGR TPVEL +Q+ Sbjct: 121 TTLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >gi|261338353|ref|ZP_05966237.1| transcription termination/antitermination factor NusG [Bifidobacterium gallicum DSM 20093] gi|270277028|gb|EFA22882.1| transcription termination/antitermination factor NusG [Bifidobacterium gallicum DSM 20093] Length = 290 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 102/186 (54%), Gaps = 12/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ +I R++ GL+ ++ ++ +P E V + K R PG Sbjct: 105 KWYVLHTYSGYEKRVKSNIESRVASFGLEDVIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 164 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV------------E 111 YVLI+ + +++T V GF+G P+P++ E+ ++ + Sbjct: 165 YVLIRMYPDENARRIVRETEGVTGFVGPTREPAPLSRQEVVSMLAPMIASQALKDAGDKP 224 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 AA ++ V F G++V V+DGPFA+ + +V +V+ +++V V IFGR TPVEL ++ Sbjct: 225 AAAKKRTIEVSFAPGDQVTVTDGPFATMSAVVSDVEPTTQKLNVLVSIFGRDTPVELGFD 284 Query: 172 QVEKIV 177 QVEK+V Sbjct: 285 QVEKLV 290 >gi|119963130|ref|YP_948675.1| transcription termination/antitermination factor NusG [Arthrobacter aurescens TC1] gi|119949989|gb|ABM08900.1| transcription termination/antitermination factor NusG [Arthrobacter aurescens TC1] Length = 300 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY Sbjct: 118 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 177 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 178 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEQGKPVNK 237 Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV Sbjct: 238 QNQAPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 297 Query: 174 EKI 176 KI Sbjct: 298 TKI 300 >gi|297192720|ref|ZP_06910118.1| transcription antitermination protein nusG [Streptomyces pristinaespiralis ATCC 25486] gi|197721624|gb|EDY65532.1| transcription antitermination protein nusG [Streptomyces pristinaespiralis ATCC 25486] Length = 298 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 111 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 170 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 171 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 230 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 231 KPAPARKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 290 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 291 SFDQIQK 297 >gi|323358913|ref|YP_004225309.1| transcription antiterminator [Microbacterium testaceum StLB037] gi|323275284|dbj|BAJ75429.1| transcription antiterminator [Microbacterium testaceum StLB037] Length = 376 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 17/191 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ E+K +I R S ++ + ++ +P E VV ++ G++ R PG Sbjct: 186 KWYVIHSYAGFERKVKANIEQRKSTLEVEDDIYQVEVPMEDVVEIKNGQRKMVNRVRIPG 245 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120 YVL++ + + + ++ TP V GF+G NP+P+ E +++ + + + Sbjct: 246 YVLVRMDLNEDTWSVVRHTPGVTGFVGNAHNPTPLRFEEAFNMLKSLVEVKEAAPTKAGA 305 Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V FE GE + + +G FA G + + E ++ V V +F R TPV Sbjct: 306 AKGAPVATRSLPAEVDFETGETITIKEGSFAGLPGTISEIKPESGKLTVLVSLFERETPV 365 Query: 167 ELAYNQVEKIV 177 EL+++QV K++ Sbjct: 366 ELSFDQVTKML 376 >gi|302543380|ref|ZP_07295722.1| transcription antitermination protein NusG [Streptomyces hygroscopicus ATCC 53653] gi|302460998|gb|EFL24091.1| transcription antitermination protein NusG [Streptomyces himastatinicus ATCC 53653] Length = 276 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 89 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 148 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 149 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKATAEEGG 208 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 209 APAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 268 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 269 SFDQIQK 275 >gi|328884386|emb|CCA57625.1| Transcription antitermination protein NusG [Streptomyces venezuelae ATCC 10712] Length = 299 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N ++ PGY Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKGGERKNVKQNKLPGY 171 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-------- 116 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 231 Query: 117 --------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 232 KPAPARKLEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 291 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 292 SFDQIQK 298 >gi|161506934|ref|YP_001576888.1| transcription antiterminator [Lactobacillus helveticus DPC 4571] gi|160347923|gb|ABX26597.1| transcription antiterminator [Lactobacillus helveticus DPC 4571] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 5/176 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R+ G+ + + +P E V +G+K E + FP Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRVQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E++ ++ ++P Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVDRLLKNQGQPAKQPTE 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE+GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K Sbjct: 127 --NFEIGEAVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK 180 >gi|38233045|ref|NP_938812.1| transcription antitermination protein NusG [Corynebacterium diphtheriae NCTC 13129] gi|38199304|emb|CAE48935.1| Putative transcription antitermination protein [Corynebacterium diphtheriae] Length = 263 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + ++ +P E+ + +R G++ +R+ PGY Sbjct: 73 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAIELRDGKRKLVKRKLLPGY 132 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ + D+ + ++DTP V F+G N +PV ++ + Sbjct: 133 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEATESEAVNAEGEK 192 Query: 109 --QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + +P ++V FEVGE V + G FAS + + +D E +++ V IFGR TPV Sbjct: 193 VVAMPTDSTKPKTAVDFEVGEAVTILSGAFASVSATISGIDHENAKIQALVSIFGRETPV 252 Query: 167 ELAYNQVEKI 176 ELA++QVEKI Sbjct: 253 ELAFDQVEKI 262 >gi|239929535|ref|ZP_04686488.1| transcription antitermination protein [Streptomyces ghanaensis ATCC 14672] Length = 266 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY Sbjct: 79 WYVIHTYAGYENRVKTNLEQRAVSLNVEEYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 138 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 139 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 198 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 199 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVEL 258 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 259 SFDQIQK 265 >gi|319937663|ref|ZP_08012066.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1] gi|319807098|gb|EFW03712.1| transcription antitermination protein nusG [Coprobacillus sp. 29_1] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K E++ R+ GL + I IP ++ G+K+N + FPG Sbjct: 10 RWYVVNTYSGHENKVKENLEKRVESMGLQDCLFNIVIPEHVETEIKDGKKINKTKNMFPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 YVL++ +MTD+ ++ +++T V GF+ G G P P+ EI+ I+ ++ +Q Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKHEIDPILKRMG--IQTTQLE 127 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + G+ V V GPFA G V+++D EK V V G TP+E+ Q+EK+ Sbjct: 128 INYAEGDEVKVLSGPFAGKQGKVESIDREKEVATVLVDFLGNATPMEVELIQLEKV 183 >gi|218131350|ref|ZP_03460154.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697] gi|317476377|ref|ZP_07935626.1| transcription termination/antitermination factor NusG [Bacteroides eggerthii 1_2_48FAA] gi|329956685|ref|ZP_08297258.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|217986282|gb|EEC52619.1| hypothetical protein BACEGG_02961 [Bacteroides eggerthii DSM 20697] gi|316907403|gb|EFV29108.1| transcription termination/antitermination factor NusG [Bacteroides eggerthii 1_2_48FAA] gi|328524057|gb|EGF51133.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 180 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|227894581|ref|ZP_04012386.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM 16047] gi|227863572|gb|EEJ70993.1| transcriptional antiterminator NusG [Lactobacillus ultunensis DSM 16047] Length = 198 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 20 KKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E+E ++ +RP + Sbjct: 80 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKRPTA 139 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 140 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 194 >gi|126663347|ref|ZP_01734345.1| transcription anti-termination protein [Flavobacteria bacterium BAL38] gi|126625005|gb|EAZ95695.1| transcription anti-termination protein [Flavobacteria bacterium BAL38] Length = 183 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 114/176 (64%), Gaps = 3/176 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S E K I +R G+ ++++ +P+E+VV+VR G+K+ ++ +FPG Sbjct: 8 KWYVVRAVSGQENKVKAYIETETARLGMADYISQVLVPTEKVVTVRDGKKIAKDKVYFPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 Y++I+A +T ++ H IK P VIGFLG G + P+ SE+ ++ +V+ + S + Sbjct: 68 YIMIEANLTGEIPHIIKSIPGVIGFLGETKGGDAVPLRQSEVNRMLGKVDELSVKVDSVA 127 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + +GE V V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL++ QVEK+ Sbjct: 128 IPYNIGETVKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183 >gi|114799751|ref|YP_760699.1| transcription termination/antitermination factor NusG [Hyphomonas neptunium ATCC 15444] gi|114739925|gb|ABI78050.1| transcription termination/antitermination factor NusG [Hyphomonas neptunium ATCC 15444] Length = 180 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 4/180 (2%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ +WYIV YSN EKK +I + R GL HL+ EI +P+E VV V +G+K E+R Sbjct: 1 MSDAKWYIVHAYSNFEKKVAATIREQAERKGLLHLIEEIEVPTEEVVEVARGKKKTVEKR 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQ-VEAAVQR 116 FFPGYVL+KA +TD +YH +KDTPKV GFLG G+ P PV E++ I+ + V+ +R Sbjct: 61 FFPGYVLMKAQLTDDIYHLVKDTPKVSGFLGAEGGKKPLPVRQREVDRILGKSVDPTAER 120 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 P V FE+GE+V V+DGPF F G V+ +DE R+ V V IFGR TPV+L ++QV KI Sbjct: 121 PRPKVSFEIGEQVQVNDGPFQGFEGAVEEIDEANGRLKVTVSIFGRGTPVDLEFDQVVKI 180 >gi|326334492|ref|ZP_08200703.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693261|gb|EGD35189.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 182 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I +SR G V ++ +P+E+V +R G+K+N E+ FF Sbjct: 5 EKKWYVVRAVSGQENKVKSYIESEISRLGYADYVEQVLVPTEKVPQLRNGKKINVEKVFF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGYV++KA ++ +V H IK+ VIGFLG G P+P+ SE+ ++ V+ ++ Sbjct: 65 PGYVMVKADLSGEVSHIIKNISGVIGFLGETKGGTPTPIRKSEVNRMLGIVDELQEKVET 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +E+GE V V DGPF F G V+ V+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 125 VLIPYEIGESVKVIDGPFNGFTGNVEKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182 >gi|325964183|ref|YP_004242089.1| transcription termination/antitermination factor NusG [Arthrobacter phenanthrenivorans Sphe3] gi|323470270|gb|ADX73955.1| transcription termination/antitermination factor NusG [Arthrobacter phenanthrenivorans Sphe3] Length = 274 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY Sbjct: 92 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 151 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 152 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 211 Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV Sbjct: 212 QHQTPVAVDFEVGESVIVKEGPFETLPATISEIKPESQTLVVLVSIFERETPVTLAFNQV 271 Query: 174 EKI 176 KI Sbjct: 272 TKI 274 >gi|329938257|ref|ZP_08287708.1| putative transcription antitermination factor NusG [Streptomyces griseoaurantiacus M045] gi|329302746|gb|EGG46636.1| putative transcription antitermination factor NusG [Streptomyces griseoaurantiacus M045] Length = 303 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY Sbjct: 116 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 175 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------N 108 VL++ +T++ + +++TP V GF+G +P P++ EI ++ Sbjct: 176 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 235 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 236 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 295 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 296 SFDQIQK 302 >gi|150392173|ref|YP_001322222.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149952035|gb|ABR50563.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 172 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I G++ L+ E+ +P+E + ++ G+K E + +PG Sbjct: 6 KWYVVHTYSGHENKVKINIEKMAENRGMEDLILEVAVPTEEKIEIKNGKKKTKEVKLYPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K +TD+ ++ +++T V GF+G P P+TD E++++ V++ + Sbjct: 66 YVLLKMHVTDESWYLVRNTRGVTGFVGPSSKPIPLTDREVKNM------GVEQVSHEIDI 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++G+ + V GPF SF G +++++ EK + V + +FGR TPVEL ++QV+ + Sbjct: 120 KIGDSIRVVSGPFESFMGSIEHINMEKQTIRVLISMFGRETPVELEFHQVQAL 172 >gi|81429286|ref|YP_396287.1| transcription antitermination protein NusG [Lactobacillus sakei subsp. sakei 23K] gi|78610929|emb|CAI55981.1| Transcription antitermination protein NusG [Lactobacillus sakei subsp. sakei 23K] Length = 182 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 5/179 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K ++ R G+++ V + +P E ++ G+ ++ F Sbjct: 6 EKSWYVLHTYSGYENKVKANLESRAQSMGMENNVFRVVVPEEEEHEIKNGKDKVDMKKTF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VM+D+ + +++TP V GF+G+ G P+P+ D EI I+ Q+ + Sbjct: 66 PGYVLVEMVMSDEAWFVVRNTPGVTGFVGSHGAGSKPAPLLDDEISQILRQLG--MSTRH 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V F+VGE V + DG F+ G + VD+EK ++ V + +FGR T EL Y+QV+++V Sbjct: 124 LDVEFKVGESVKIVDGAFSGLVGQITEVDDEKMKLKVNIDMFGRETATELDYDQVDELV 182 >gi|332169100|gb|AEE18355.1| NusG antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 184 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLNLEDSIEEVLVPTEKVIQIRNGKKVNKERVYF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGY+++KA + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ + S Sbjct: 67 PGYIMVKANLGGEIPHIIKSINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVKQDS 126 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 127 ISIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184 >gi|259500947|ref|ZP_05743849.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus iners DSM 13335] gi|302190601|ref|ZP_07266855.1| transcription antiterminator [Lactobacillus iners AB-1] gi|309803749|ref|ZP_07697835.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 11V1-d] gi|309804673|ref|ZP_07698738.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 09V1-c] gi|309806514|ref|ZP_07700518.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 03V1-b] gi|309808458|ref|ZP_07702357.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 01V1-a] gi|309809223|ref|ZP_07703093.1| transcription termination/antitermination factor NusG [Lactobacillus iners SPIN 2503V10-D] gi|312871558|ref|ZP_07731651.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 3008A-a] gi|312872528|ref|ZP_07732596.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2062A-h1] gi|312873886|ref|ZP_07733924.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2052A-d] gi|312874827|ref|ZP_07734846.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2053A-b] gi|315653972|ref|ZP_07906888.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Lactobacillus iners ATCC 55195] gi|325912459|ref|ZP_08174854.1| transcription termination/antitermination factor NusG [Lactobacillus iners UPII 143-D] gi|325913127|ref|ZP_08175497.1| transcription termination/antitermination factor NusG [Lactobacillus iners UPII 60-B] gi|329920454|ref|ZP_08277186.1| transcription termination/antitermination factor NusG [Lactobacillus iners SPIN 1401G] gi|259167641|gb|EEW52136.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus iners DSM 13335] gi|308164158|gb|EFO66419.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 11V1-d] gi|308166065|gb|EFO68283.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 09V1-c] gi|308167113|gb|EFO69288.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 03V1-b] gi|308168286|gb|EFO70405.1| transcription termination/antitermination factor NusG [Lactobacillus iners LactinV 01V1-a] gi|308170457|gb|EFO72480.1| transcription termination/antitermination factor NusG [Lactobacillus iners SPIN 2503V10-D] gi|311089572|gb|EFQ47997.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2053A-b] gi|311090562|gb|EFQ48968.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2052A-d] gi|311091890|gb|EFQ50266.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 2062A-h1] gi|311092953|gb|EFQ51304.1| transcription termination/antitermination factor NusG [Lactobacillus iners LEAF 3008A-a] gi|315488668|gb|EFU78314.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Lactobacillus iners ATCC 55195] gi|325475801|gb|EGC78972.1| transcription termination/antitermination factor NusG [Lactobacillus iners UPII 143-D] gi|325477548|gb|EGC80690.1| transcription termination/antitermination factor NusG [Lactobacillus iners UPII 60-B] gi|328936130|gb|EGG32583.1| transcription termination/antitermination factor NusG [Lactobacillus iners SPIN 1401G] Length = 183 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 5/176 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E+K + + R G+ + + +P + V +G++ + + FP Sbjct: 7 KQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKVDEKVFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ D EI+ I+ + + Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILA--DQNKEAAPQ 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S FEVGE V +++GPF + G + ++ +K ++ V + +FGR T EL + QV+K Sbjct: 125 SYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK 180 >gi|307328012|ref|ZP_07607193.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113] gi|306886317|gb|EFN17322.1| NusG antitermination factor [Streptomyces violaceusniger Tu 4113] Length = 304 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + N + PGY Sbjct: 117 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 176 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 177 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAKAAAEESG 236 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 237 MPAPSRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 296 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 297 SFDQIQK 303 >gi|229015498|ref|ZP_04172496.1| Transcription antitermination protein nusG [Bacillus cereus AH1273] gi|229021707|ref|ZP_04178289.1| Transcription antitermination protein nusG [Bacillus cereus AH1272] gi|228739575|gb|EEL89989.1| Transcription antitermination protein nusG [Bacillus cereus AH1272] gi|228745785|gb|EEL95789.1| Transcription antitermination protein nusG [Bacillus cereus AH1273] Length = 177 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V +R G++ +R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMRNGKEKLMKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177 >gi|315925316|ref|ZP_07921527.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315621217|gb|EFV01187.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 179 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 6/174 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P+WY+ YS E K SI + G++ ++ ++ +P++ VV + G+KV E++ FP Sbjct: 9 PQWYVAHTYSGYENKVKASIEATVEHRGMEDVILQVEVPTQDVVETKNGKKVIKEKKLFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV+++ MTD ++ +++T V GF+G P P++ E+ + + R + Sbjct: 69 GYVIVQMYMTDDSWYVVRNTRGVTGFVGPASKPVPLSPEELRKMGIR------RQQVEID 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG++V + DGPF G V+ ++ EKS++ V + +FGR T EL ++Q EK+ Sbjct: 123 LAVGDQVKIIDGPFEGMAGEVEVINLEKSKIKVNLSVFGRETLTELDFDQAEKL 176 >gi|116671541|ref|YP_832474.1| NusG antitermination factor [Arthrobacter sp. FB24] gi|116611650|gb|ABK04374.1| NusG antitermination factor [Arthrobacter sp. FB24] Length = 287 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY Sbjct: 106 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 165 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 166 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVKH 225 Query: 121 ------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V FEVGE V V +GPF + + + + + V V IF R TPV LA+NQV Sbjct: 226 AAAPVDVDFEVGESVIVKEGPFETLPATISEIKVDSQTLVVLVSIFERETPVTLAFNQVT 285 Query: 175 KI 176 KI Sbjct: 286 KI 287 >gi|315037590|ref|YP_004031158.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112] gi|312275723|gb|ADQ58363.1| transcription antiterminator [Lactobacillus amylovorus GRL 1112] Length = 185 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E V +G+K E + FP Sbjct: 7 KKWYVLHTYSGYEDKVKSDVLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E+E ++ + P + Sbjct: 67 GYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLKNQGQPAKEPTA 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +GE V +++G F G + ++ +K +++V V +FGR T EL Y+QV+K+ Sbjct: 127 NFD--IGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKKL 181 >gi|209364194|ref|YP_001425195.2| transcription antitermination protein [Coxiella burnetii Dugway 5J108-111] gi|207082127|gb|ABS78422.2| transcription antitermination protein [Coxiella burnetii Dugway 5J108-111] Length = 188 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP Sbjct: 21 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 80 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V Sbjct: 81 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 134 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 135 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 187 >gi|224537804|ref|ZP_03678343.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus DSM 14838] gi|224520624|gb|EEF89729.1| hypothetical protein BACCELL_02691 [Bacteroides cellulosilyticus DSM 14838] Length = 180 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVREYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG + P P+ SE+ I+ V+ + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSDKPVPLRQSEVNRILGTVDELQDAGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|169634599|ref|YP_001708335.1| transcription antitermination protein [Acinetobacter baumannii SDF] gi|169797458|ref|YP_001715251.1| transcription antitermination protein [Acinetobacter baumannii AYE] gi|184156618|ref|YP_001844957.1| transcription antiterminator [Acinetobacter baumannii ACICU] gi|213155728|ref|YP_002317773.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii AB0057] gi|215484895|ref|YP_002327134.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii AB307-0294] gi|239500983|ref|ZP_04660293.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii AB900] gi|260556350|ref|ZP_05828569.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii ATCC 19606] gi|294838493|ref|ZP_06783176.1| transcription antitermination protein [Acinetobacter sp. 6013113] gi|294840899|ref|ZP_06785582.1| transcription antitermination protein [Acinetobacter sp. 6014059] gi|294859137|ref|ZP_06796906.1| transcription antitermination protein [Acinetobacter sp. 6013150] gi|301346453|ref|ZP_07227194.1| transcription antitermination protein [Acinetobacter baumannii AB056] gi|301512021|ref|ZP_07237258.1| transcription antitermination protein [Acinetobacter baumannii AB058] gi|301597215|ref|ZP_07242223.1| transcription antitermination protein [Acinetobacter baumannii AB059] gi|169150385|emb|CAM88282.1| transcription antitermination protein [Acinetobacter baumannii AYE] gi|169153391|emb|CAP02518.1| transcription antitermination protein [Acinetobacter baumannii] gi|183208212|gb|ACC55610.1| Transcription antiterminator [Acinetobacter baumannii ACICU] gi|193076139|gb|ABO10752.2| transcription antitermination protein [Acinetobacter baumannii ATCC 17978] gi|213054888|gb|ACJ39790.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii AB0057] gi|213985795|gb|ACJ56094.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii AB307-0294] gi|260410405|gb|EEX03704.1| transcription termination/antitermination factor NusG [Acinetobacter baumannii ATCC 19606] gi|322506505|gb|ADX01959.1| nusG [Acinetobacter baumannii 1656-2] gi|323516384|gb|ADX90765.1| transcription antiterminator [Acinetobacter baumannii TCDC-AB0715] Length = 177 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK + Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177 >gi|187932833|ref|YP_001884461.1| transcription antitermination protein NusG [Clostridium botulinum B str. Eklund 17B] gi|187720986|gb|ACD22207.1| transcription termination/antitermination factor NusG [Clostridium botulinum B str. Eklund 17B] Length = 173 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L+ L+ ++ +P E V+ + G++ S ++ FPG Sbjct: 6 RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVIEEKDGKQKVSLKKKFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + V + Sbjct: 66 YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEIDL 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V Sbjct: 120 EVGESIRIISGPLRDSVAKIQEIVLDKKKIKALVDMFGRETLAELDFNQVEKLV 173 >gi|163938104|ref|YP_001642988.1| transcription antitermination protein NusG [Bacillus weihenstephanensis KBAB4] gi|229009605|ref|ZP_04166831.1| Transcription antitermination protein nusG [Bacillus mycoides DSM 2048] gi|229053942|ref|ZP_04195376.1| Transcription antitermination protein nusG [Bacillus cereus AH603] gi|229131103|ref|ZP_04260015.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST196] gi|229165084|ref|ZP_04292879.1| Transcription antitermination protein nusG [Bacillus cereus AH621] gi|163860301|gb|ABY41360.1| NusG antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228618347|gb|EEK75377.1| Transcription antitermination protein nusG [Bacillus cereus AH621] gi|228652316|gb|EEL08241.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST196] gi|228721360|gb|EEL72881.1| Transcription antitermination protein nusG [Bacillus cereus AH603] gi|228751627|gb|EEM01427.1| Transcription antitermination protein nusG [Bacillus mycoides DSM 2048] Length = 177 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ ++R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKITKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFEFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177 >gi|300857721|ref|YP_003782704.1| transcription antitermination protein [Corynebacterium pseudotuberculosis FRC41] gi|300685175|gb|ADK28097.1| transcription antitermination protein [Corynebacterium pseudotuberculosis FRC41] gi|302205463|gb|ADL09805.1| Transcription anti-termination protein NusG [Corynebacterium pseudotuberculosis C231] Length = 276 Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY Sbjct: 81 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 140 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ + D+ + ++DTP V F+G N +PV ++ + Sbjct: 141 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 200 Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + A +P V F+VGE V + G AS + + +D E +++ V IFG Sbjct: 201 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 260 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEK+ Sbjct: 261 RETPVELNFDQVEKV 275 >gi|255692646|ref|ZP_05416321.1| transcription termination/antitermination factor NusG [Bacteroides finegoldii DSM 17565] gi|260621622|gb|EEX44493.1| transcription termination/antitermination factor NusG [Bacteroides finegoldii DSM 17565] Length = 180 Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADIKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVSHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|91215203|ref|ZP_01252175.1| putative transcription antitermination protein [Psychroflexus torquis ATCC 700755] gi|91186808|gb|EAS73179.1| putative transcription antitermination protein [Psychroflexus torquis ATCC 700755] Length = 183 Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K + I +S GL V +I +P+E VV +R G+K+ E+ +FP Sbjct: 7 KKWYVVRSISGSENKVKDYIEKEISHQGLSDYVDDILVPTENVVQIRDGKKITKEKVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEA-AVQRPVS 119 GY+++ A + +V H IK+ VIGFLG + P P+ +SE+ ++ +V+ + Q+ Sbjct: 67 GYIMVNANLEGEVGHVIKNVNGVIGFLGETKRGDPVPMRESEVNRMLGKVDQLSTQKENV 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE + V DGPF SF G + ++E+K ++ V V IFGR TPVEL+Y QVEKI Sbjct: 127 AIPFNIGESIKVVDGPFNSFTGTIDKINEDKRKLQVMVKIFGRKTPVELSYMQVEKI 183 >gi|30018366|ref|NP_829997.1| transcription antitermination protein NusG [Bacillus cereus ATCC 14579] gi|30260287|ref|NP_842664.1| transcription antitermination protein NusG [Bacillus anthracis str. Ames] gi|42779177|ref|NP_976424.1| transcription antitermination protein NusG [Bacillus cereus ATCC 10987] gi|49183130|ref|YP_026382.1| transcription antitermination protein NusG [Bacillus anthracis str. Sterne] gi|49476713|ref|YP_034448.1| transcription antitermination protein NusG [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196907|ref|YP_016699.2| transcription antitermination protein NusG [Bacillus anthracis str. 'Ames Ancestor'] gi|52145121|ref|YP_081707.1| transcription antitermination protein NusG [Bacillus cereus E33L] gi|65317556|ref|ZP_00390515.1| COG0250: Transcription antiterminator [Bacillus anthracis str. A2012] gi|118475865|ref|YP_893016.1| transcription antitermination protein NusG [Bacillus thuringiensis str. Al Hakam] gi|170689570|ref|ZP_02880756.1| transcription antitermination protein NusG [Bacillus anthracis str. A0465] gi|177655596|ref|ZP_02936977.1| transcription antitermination protein NusG [Bacillus anthracis str. A0174] gi|206972266|ref|ZP_03233213.1| transcription antitermination protein NusG [Bacillus cereus AH1134] gi|217957671|ref|YP_002336215.1| transcription antitermination protein NusG [Bacillus cereus AH187] gi|218231706|ref|YP_002364945.1| transcription antitermination protein NusG [Bacillus cereus B4264] gi|218895231|ref|YP_002443642.1| transcription antitermination protein NusG [Bacillus cereus G9842] gi|222093866|ref|YP_002527916.1| transcription antitermination protein nusg [Bacillus cereus Q1] gi|225862148|ref|YP_002747526.1| transcription antitermination protein NusG [Bacillus cereus 03BB102] gi|227812769|ref|YP_002812778.1| transcription antitermination protein NusG [Bacillus anthracis str. CDC 684] gi|228898849|ref|ZP_04063131.1| Transcription antitermination protein nusG [Bacillus thuringiensis IBL 4222] gi|228905893|ref|ZP_04069790.1| Transcription antitermination protein nusG [Bacillus thuringiensis IBL 200] gi|228912835|ref|ZP_04076482.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228919046|ref|ZP_04082425.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228925349|ref|ZP_04088445.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931598|ref|ZP_04094504.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228937398|ref|ZP_04100044.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228943902|ref|ZP_04106287.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228950644|ref|ZP_04112778.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956537|ref|ZP_04118333.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963196|ref|ZP_04124365.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar sotto str. T04001] gi|228970284|ref|ZP_04130943.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976854|ref|ZP_04137266.1| Transcription antitermination protein nusG [Bacillus thuringiensis Bt407] gi|228983351|ref|ZP_04143564.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229027944|ref|ZP_04184097.1| Transcription antitermination protein nusG [Bacillus cereus AH1271] gi|229041001|ref|ZP_04189764.1| Transcription antitermination protein nusG [Bacillus cereus AH676] gi|229067861|ref|ZP_04201178.1| Transcription antitermination protein nusG [Bacillus cereus F65185] gi|229089227|ref|ZP_04220508.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-42] gi|229107782|ref|ZP_04237418.1| Transcription antitermination protein nusG [Bacillus cereus Rock1-15] gi|229119758|ref|ZP_04249019.1| Transcription antitermination protein nusG [Bacillus cereus 95/8201] gi|229125613|ref|ZP_04254645.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-Cer4] gi|229136942|ref|ZP_04265569.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST26] gi|229142902|ref|ZP_04271343.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST24] gi|229148505|ref|ZP_04276761.1| Transcription antitermination protein nusG [Bacillus cereus m1550] gi|229153874|ref|ZP_04282004.1| Transcription antitermination protein nusG [Bacillus cereus ATCC 4342] gi|229159269|ref|ZP_04287293.1| Transcription antitermination protein nusG [Bacillus cereus R309803] gi|229170947|ref|ZP_04298548.1| Transcription antitermination protein nusG [Bacillus cereus MM3] gi|229176696|ref|ZP_04304100.1| Transcription antitermination protein nusG [Bacillus cereus 172560W] gi|229182490|ref|ZP_04309741.1| Transcription antitermination protein nusG [Bacillus cereus BGSC 6E1] gi|229188381|ref|ZP_04315429.1| Transcription antitermination protein nusG [Bacillus cereus ATCC 10876] gi|229194486|ref|ZP_04321289.1| Transcription antitermination protein nusG [Bacillus cereus m1293] gi|229604171|ref|YP_002864747.1| transcription termination/antitermination factor NusG [Bacillus anthracis str. A0248] gi|254684400|ref|ZP_05148260.1| transcription antitermination protein NusG [Bacillus anthracis str. CNEVA-9066] gi|254733749|ref|ZP_05191464.1| transcription antitermination protein NusG [Bacillus anthracis str. Western North America USA6153] gi|254739418|ref|ZP_05197118.1| transcription antitermination protein NusG [Bacillus anthracis str. Kruger B] gi|254751209|ref|ZP_05203247.1| transcription antitermination protein NusG [Bacillus anthracis str. Vollum] gi|254756808|ref|ZP_05208836.1| transcription antitermination protein NusG [Bacillus anthracis str. Australia 94] gi|300119593|ref|ZP_07057137.1| transcription antitermination protein NusG [Bacillus cereus SJ1] gi|301051833|ref|YP_003790044.1| transcription antitermination protein NusG [Bacillus anthracis CI] gi|29893906|gb|AAP07198.1| Transcription antitermination protein nusG [Bacillus cereus ATCC 14579] gi|30253608|gb|AAP24150.1| transcription termination/antitermination factor NusG [Bacillus anthracis str. Ames] gi|42735092|gb|AAS39032.1| transcription antitermination protein NusG [Bacillus cereus ATCC 10987] gi|49177057|gb|AAT52433.1| transcription antitermination protein NusG [Bacillus anthracis str. Sterne] gi|49328269|gb|AAT58915.1| transcription antitermination factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50082969|gb|AAT29174.2| transcription antitermination protein NusG [Bacillus anthracis str. 'Ames Ancestor'] gi|51978590|gb|AAU20140.1| transcription antitermination factor [Bacillus cereus E33L] gi|118415090|gb|ABK83509.1| transcription antitermination protein nusG [Bacillus thuringiensis str. Al Hakam] gi|170666483|gb|EDT17260.1| transcription antitermination protein NusG [Bacillus anthracis str. A0465] gi|172080060|gb|EDT65158.1| transcription antitermination protein NusG [Bacillus anthracis str. A0174] gi|206732840|gb|EDZ50015.1| transcription antitermination protein NusG [Bacillus cereus AH1134] gi|217068204|gb|ACJ82454.1| transcription antitermination protein NusG [Bacillus cereus AH187] gi|218159663|gb|ACK59655.1| transcription termination/antitermination factor NusG [Bacillus cereus B4264] gi|218543346|gb|ACK95740.1| transcription antitermination protein NusG [Bacillus cereus G9842] gi|221237914|gb|ACM10624.1| transcription antitermination factor [Bacillus cereus Q1] gi|225790801|gb|ACO31018.1| transcription termination/antitermination factor NusG [Bacillus cereus 03BB102] gi|227003815|gb|ACP13558.1| transcription termination/antitermination factor NusG [Bacillus anthracis str. CDC 684] gi|228588952|gb|EEK46967.1| Transcription antitermination protein nusG [Bacillus cereus m1293] gi|228595055|gb|EEK52826.1| Transcription antitermination protein nusG [Bacillus cereus ATCC 10876] gi|228600945|gb|EEK58514.1| Transcription antitermination protein nusG [Bacillus cereus BGSC 6E1] gi|228606739|gb|EEK64156.1| Transcription antitermination protein nusG [Bacillus cereus 172560W] gi|228612487|gb|EEK69708.1| Transcription antitermination protein nusG [Bacillus cereus MM3] gi|228624161|gb|EEK80963.1| Transcription antitermination protein nusG [Bacillus cereus R309803] gi|228629555|gb|EEK86252.1| Transcription antitermination protein nusG [Bacillus cereus ATCC 4342] gi|228634921|gb|EEK91494.1| Transcription antitermination protein nusG [Bacillus cereus m1550] gi|228640523|gb|EEK96912.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST24] gi|228646480|gb|EEL02687.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-ST26] gi|228657805|gb|EEL13611.1| Transcription antitermination protein nusG [Bacillus cereus BDRD-Cer4] gi|228663659|gb|EEL19238.1| Transcription antitermination protein nusG [Bacillus cereus 95/8201] gi|228675631|gb|EEL30839.1| Transcription antitermination protein nusG [Bacillus cereus Rock1-15] gi|228694066|gb|EEL47748.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-42] gi|228715220|gb|EEL67079.1| Transcription antitermination protein nusG [Bacillus cereus F65185] gi|228727298|gb|EEL78492.1| Transcription antitermination protein nusG [Bacillus cereus AH676] gi|228733332|gb|EEL84161.1| Transcription antitermination protein nusG [Bacillus cereus AH1271] gi|228776341|gb|EEM24694.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228782824|gb|EEM30990.1| Transcription antitermination protein nusG [Bacillus thuringiensis Bt407] gi|228789393|gb|EEM37313.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796454|gb|EEM43893.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar sotto str. T04001] gi|228803102|gb|EEM49924.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808995|gb|EEM55480.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228815735|gb|EEM61971.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822231|gb|EEM68213.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228828026|gb|EEM73754.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834271|gb|EEM79812.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228840571|gb|EEM85833.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228846771|gb|EEM91776.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228853708|gb|EEM98468.1| Transcription antitermination protein nusG [Bacillus thuringiensis IBL 200] gi|228860749|gb|EEN05127.1| Transcription antitermination protein nusG [Bacillus thuringiensis IBL 4222] gi|229268579|gb|ACQ50216.1| transcription termination/antitermination factor NusG [Bacillus anthracis str. A0248] gi|298723065|gb|EFI63963.1| transcription antitermination protein NusG [Bacillus cereus SJ1] gi|300374002|gb|ADK02906.1| transcription antitermination protein NusG [Bacillus cereus biovar anthracis str. CI] gi|324324086|gb|ADY19346.1| transcription antitermination protein NusG [Bacillus thuringiensis serovar finitimus YBT-020] gi|326937890|gb|AEA13786.1| transcription antitermination protein NusG [Bacillus thuringiensis serovar chinensis CT-43] Length = 177 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177 >gi|237734019|ref|ZP_04564500.1| transcription antitermination protein nusG [Mollicutes bacterium D7] gi|229382845|gb|EEO32936.1| transcription antitermination protein nusG [Coprobacillus sp. D7] Length = 182 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 5/175 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FPG Sbjct: 7 QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 YVL++ +MTD+ ++ +++T V GF+ G G P P+ SE++ I+ ++ + Sbjct: 67 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMG--LSTSSIE 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK Sbjct: 125 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 179 >gi|228472143|ref|ZP_04056909.1| transcription termination/antitermination factor NusG [Capnocytophaga gingivalis ATCC 33624] gi|228276346|gb|EEK15070.1| transcription termination/antitermination factor NusG [Capnocytophaga gingivalis ATCC 33624] Length = 182 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V+ S E K I +SR G V ++ +P+E+V +R G+KVN E+ FF Sbjct: 5 EKNWYVVRAVSGQENKVKNYIESEISRLGYGDYVEQVLVPTEKVPQLRNGKKVNVEKVFF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV+IKA ++ ++ H IK VIGFLG G P+P+ SE+ ++ V+ ++ + Sbjct: 65 PGYVMIKADLSGEISHLIKGISGVIGFLGETKGGAPTPIRKSEVNRMLGIVDELQEKVDT 124 Query: 120 S-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +EVGE V V DGPF F G V V+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 125 VLIPYEVGESVKVIDGPFNGFTGNVDKVNEEKRKLEVIVKIFGRKTPLELSYTQVEKI 182 >gi|162448675|ref|YP_001611042.1| transcription antitermination protein NusG [Sorangium cellulosum 'So ce 56'] gi|161159257|emb|CAN90562.1| transcription antitermination protein NusG [Sorangium cellulosum 'So ce 56'] Length = 176 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59 M +WY++ YS E K +++ R+ + L+ EI IPSE V R G K ++ Sbjct: 1 MAKKWYVIHTYSGYEAKVRDALQQRVKQYSLEDRFGEILIPSETVTENRPGGKTRVRQKL 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGY+ ++ M ++V+H +KDTPKV GF+G + P V +I+++ + +P Sbjct: 61 SLPGYIFVEMEMNEQVWHLVKDTPKVTGFIGN-QTPQEVPIVQIDNLRRGIVEGAVKPKP 119 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FEVGE V V DG FA+F G V +V +K ++ V+V IFGR T VEL ++ VEK Sbjct: 120 RLTFEVGEEVRVLDGAFANFTGTVDDVKMDKQKLKVKVSIFGRPTSVELDFSAVEK 175 >gi|326802933|ref|YP_004320751.1| transcription termination/antitermination factor NusG [Aerococcus urinae ACS-120-V-Col10a] gi|326650638|gb|AEA00821.1| transcription termination/antitermination factor NusG [Aerococcus urinae ACS-120-V-Col10a] Length = 186 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 6/178 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFF 61 +WY++ YS E K E++ R++ ++ + + +P E + G++ + + F Sbjct: 9 KQWYVLHTYSGYENKVKENLESRITSMDMEEYIFRVVVPEEEKLQKNKSGQEKVVKTQTF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYV ++ +M+D+ + +++TP V GFLG+ G P P+ E+ ++ + P Sbjct: 69 PGYVFVEMIMSDEAWFVVRNTPNVTGFLGSHGQGSKPVPLLPDEVHRLLR--SQGISAPK 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE GE V V DG F G ++ +DEE ++ + + +FGR T E+ ++QV+K+ Sbjct: 127 RDISFEDGEVVEVIDGAFLGLEGRIEEIDEEHQKLKLTIEMFGRETIAEVDFDQVDKL 184 >gi|167756033|ref|ZP_02428160.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402] gi|167704025|gb|EDS18604.1| hypothetical protein CLORAM_01553 [Clostridium ramosum DSM 1402] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 5/175 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+N + FPG Sbjct: 10 QWYVVNTYSGHENKVKENLEKRVESMGLQDILFQIVIPEHVETEIKDGKKINKTKNMFPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 YVL++ +MTD+ ++ +++T V GF+ G G P P+ SE++ I+ ++ + Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILKKMG--LSTSSIE 127 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + G+ V V GPFA +G V+++D EK V V G +TP+E+ Q+EK Sbjct: 128 VDYAAGDEVNVISGPFAGKSGKVESIDLEKETAKVLVDFLGNLTPMEIELVQLEK 182 >gi|148653838|ref|YP_001280931.1| NusG antitermination factor [Psychrobacter sp. PRwf-1] gi|148572922|gb|ABQ94981.1| transcription antitermination protein nusG [Psychrobacter sp. PRwf-1] Length = 176 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIVQ +S EK+ + R++RS E+ +P+E VV ++ G+K SER+FFP Sbjct: 1 MRWYIVQAFSGYEKQVQRYLTDRINRSEFADKFGEVLVPTEEVVEMKDGKKRKSERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H + D P++ GF+G ENP+P+T E + I+N+++ + + P Sbjct: 61 GYVLVEMEMNDDTWHIVNDCPRITGFIGGTPENPAPITKVEADRILNRLKQSEEAPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE V V DGPF F G+V+ VD EKS++ + V +F R T VEL +++VEK+ Sbjct: 121 LFEPGEEVLVIDGPFTDFKGLVEKVDYEKSKLQLTVNVFNRPTQVELEFSKVEKL 175 >gi|229074157|ref|ZP_04207203.1| Transcription antitermination protein nusG [Bacillus cereus Rock4-18] gi|229094818|ref|ZP_04225823.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-29] gi|229100895|ref|ZP_04231699.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-28] gi|229113772|ref|ZP_04243207.1| Transcription antitermination protein nusG [Bacillus cereus Rock1-3] gi|228669643|gb|EEL25050.1| Transcription antitermination protein nusG [Bacillus cereus Rock1-3] gi|228682474|gb|EEL36547.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-28] gi|228688561|gb|EEL42434.1| Transcription antitermination protein nusG [Bacillus cereus Rock3-29] gi|228708927|gb|EEL61054.1| Transcription antitermination protein nusG [Bacillus cereus Rock4-18] Length = 177 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKIMKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVS 119 FPGYVL++ +MTD ++ +++TP V GF+G+ + S + E ++ ++ + V Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVV 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 DFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDFHQIEKL 177 >gi|289705066|ref|ZP_06501477.1| transcription termination/antitermination factor NusG [Micrococcus luteus SK58] gi|289558229|gb|EFD51509.1| transcription termination/antitermination factor NusG [Micrococcus luteus SK58] Length = 294 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 22/193 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ + R PGY Sbjct: 100 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV------TDSEIEHIMNQVEAAVQR-- 116 VL++ + D + ++ TP V GF+G + D ++ + A ++ Sbjct: 160 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYDMLAPSVIQEAARAAEKAG 219 Query: 117 --------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 P V FEVGE V V+DGPF + + + E ++ V V IF R Sbjct: 220 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 279 Query: 163 VTPVELAYNQVEK 175 TPV L++NQV K Sbjct: 280 ETPVTLSFNQVTK 292 >gi|256390118|ref|YP_003111682.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928] gi|256356344|gb|ACU69841.1| NusG antitermination factor [Catenulispora acidiphila DSM 44928] Length = 262 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 102/178 (57%), Gaps = 7/178 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + +++ R++ ++ + ++ +P E VV ++ G++ +R FPGY Sbjct: 83 WYVIHSYAGYENRVKQNLETRMTTLNMEEFIFQVEVPMEEVVEIKGGQRKRVKRNKFPGY 142 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------RP 117 VL++ +T++ + +++TP V GF+G P P+T E+ I+ + + Sbjct: 143 VLVRMDLTNESWGVVRNTPGVTGFVGNAHEPYPLTLDEVVKILLEEQPEEVSGKQKAPAE 202 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + FEVG+ V V DGPFA+ + ++ + +V V IFGR TPVEL++NQ++K Sbjct: 203 VKVLDFEVGDSVTVIDGPFATLQATINEINADSQKVKGLVEIFGRETPVELSFNQIQK 260 >gi|29348148|ref|NP_811651.1| transcription anti-termination protein [Bacteroides thetaiotaomicron VPI-5482] gi|153805945|ref|ZP_01958613.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185] gi|160883078|ref|ZP_02064081.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483] gi|237717387|ref|ZP_04547868.1| transcription anti-termination protein [Bacteroides sp. D1] gi|237718755|ref|ZP_04549236.1| transcription anti-termination protein [Bacteroides sp. 2_2_4] gi|253569578|ref|ZP_04846988.1| transcription anti-termination protein [Bacteroides sp. 1_1_6] gi|260175404|ref|ZP_05761816.1| transcription anti-termination protein [Bacteroides sp. D2] gi|262406152|ref|ZP_06082702.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_22] gi|293372131|ref|ZP_06618522.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|298386169|ref|ZP_06995726.1| transcription termination/antitermination factor NusG [Bacteroides sp. 1_1_14] gi|298483052|ref|ZP_07001233.1| transcription termination/antitermination factor NusG [Bacteroides sp. D22] gi|299144635|ref|ZP_07037703.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_23] gi|315923634|ref|ZP_07919874.1| transcription anti-termination protein [Bacteroides sp. D2] gi|29340051|gb|AAO77845.1| transcription anti-termination protein [Bacteroides thetaiotaomicron VPI-5482] gi|149130622|gb|EDM21828.1| hypothetical protein BACCAC_00190 [Bacteroides caccae ATCC 43185] gi|156111550|gb|EDO13295.1| hypothetical protein BACOVA_01041 [Bacteroides ovatus ATCC 8483] gi|229443370|gb|EEO49161.1| transcription anti-termination protein [Bacteroides sp. D1] gi|229451887|gb|EEO57678.1| transcription anti-termination protein [Bacteroides sp. 2_2_4] gi|251841597|gb|EES69678.1| transcription anti-termination protein [Bacteroides sp. 1_1_6] gi|262357027|gb|EEZ06117.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_22] gi|292632923|gb|EFF51510.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|295085440|emb|CBK66963.1| transcription antitermination protein nusG [Bacteroides xylanisolvens XB1A] gi|298261397|gb|EFI04264.1| transcription termination/antitermination factor NusG [Bacteroides sp. 1_1_14] gi|298270796|gb|EFI12376.1| transcription termination/antitermination factor NusG [Bacteroides sp. D22] gi|298515126|gb|EFI39007.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_23] gi|313697509|gb|EFS34344.1| transcription anti-termination protein [Bacteroides sp. D2] Length = 180 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|312880652|ref|ZP_07740452.1| transcription antitermination protein nusG [Aminomonas paucivorans DSM 12260] gi|310783943|gb|EFQ24341.1| transcription antitermination protein nusG [Aminomonas paucivorans DSM 12260] Length = 181 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 100/176 (56%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RW+IVQ YS E K ++ R++ G++ V + +P E V V+ G+ R+ F Sbjct: 6 ERRWFIVQTYSGYENKVKANLDQRIATMGMEERVFRVLVPVEERVYVKDGKTKRMRRKVF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL++ ++ D+ ++ ++ TP V GF+G+G +P P+T+ E+ IM ++ +P + Sbjct: 66 PSYVLVEMILDDQSWYVVRHTPGVTGFVGSGNHPIPLTEKEVAEIMGKIGKDQAKPKMEI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F++G+ V V GPF G V + +K +V + +FGR T VE + +EKI+ Sbjct: 126 AFKIGDTVRVKAGPFEGQVGPVAEIVPDKGKVKFTITVFGRETLVEADHTDLEKIL 181 >gi|302876547|ref|YP_003845180.1| NusG antitermination factor [Clostridium cellulovorans 743B] gi|307687220|ref|ZP_07629666.1| transcription antitermination protein NusG [Clostridium cellulovorans 743B] gi|302579404|gb|ADL53416.1| NusG antitermination factor [Clostridium cellulovorans 743B] Length = 173 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V +S E K ++ + L + +I IP V + G++ + ++ PG Sbjct: 6 KWYVVNTFSGYENKVKATLEKSIDNRNLHNYFYDIQIPMSEEVEEKDGKQKVALKKLLPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV IK +MTD ++ +++T V GF+G P +T+ EI+ + + ++V Sbjct: 66 YVFIKMIMTDDTWYIVRNTRGVSGFVGPAGKPVSLTNEEIDRM------GINDTPATVDM 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVGE V ++ G FN + V+ EK ++ V +FGR TP EL + QVEK+ Sbjct: 120 EVGETVLITSGALKGFNAQITEVNIEKQKIKGLVDMFGRETPAELDFAQVEKL 172 >gi|187735541|ref|YP_001877653.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187425593|gb|ACD04872.1| NusG antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 189 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ V S E + I + + L + + +P+E + VR G+K + FPG Sbjct: 10 QWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFPG 69 Query: 64 YVLIKA-------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 YV + +++ I+ VI G+ P P+ E+E ++ ++A Sbjct: 70 YVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAVA 129 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F VG+ V V +GPF S G ++ +D EK ++ V V IFGR TPV+L Y QVEK Sbjct: 130 ARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188 >gi|86131812|ref|ZP_01050409.1| transcriptional antitermination factor NusG [Dokdonia donghaensis MED134] gi|85817634|gb|EAQ38808.1| transcriptional antitermination factor NusG [Dokdonia donghaensis MED134] Length = 184 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY+V+ S E K I +SR L+ + E+ +P+E+V+ +R G+KVN ER +F Sbjct: 7 TKQWYVVRAVSGQENKVKAYIEQEISRLSLEDNIEEVLVPTEKVIQIRNGKKVNKERVYF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGY+++KA + ++ H IK VIGFLG G +P P+ +E+ ++ +V+ + S Sbjct: 67 PGYIMVKANLAGEIPHIIKSINGVIGFLGEVKGGDPVPLRKAEVNRMLGKVDELAVKQDS 126 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 127 VAIPFTIGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184 >gi|317052115|ref|YP_004113231.1| transcription termination/antitermination factor NusG [Desulfurispirillum indicum S5] gi|316947199|gb|ADU66675.1| transcription termination/antitermination factor NusG [Desulfurispirillum indicum S5] Length = 172 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K E++ R+S GL +T+I IP+E V + G+K R+ Sbjct: 1 MALSWYVIHAYSGYENKVQEALEERVSSLGLQDKITQILIPTENVAEYKGGKKKIVTRKR 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV ++ M +H +K+ PKV GF+G G P + DSE++ + +E+ + Sbjct: 61 YPGYVYVQMEMDKTTWHVVKNIPKVTGFIG-GNKPVAIHDSEVQKL---IESDKRLVEPK 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F + V V +GPF FNG+V +VD E+ RV V V IFGR TPVE Y Q++KI Sbjct: 117 VEFVERDPVEVVEGPFHGFNGVVTHVDHERKRVKVNVSIFGRETPVEFEYTQIQKI 172 >gi|78187809|ref|YP_375852.1| NusG antitermination factor [Chlorobium luteolum DSM 273] gi|78167711|gb|ABB24809.1| transcription antitermination protein nusG [Chlorobium luteolum DSM 273] Length = 192 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 105/175 (60%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY +++YS E+K E I + RSGL + ++ +P E+ V V+ G+K + + F Sbjct: 16 AARWYALRIYSGHERKVKEGIDAEVERSGLGDKILQVYVPYEKFVEVKNGKKRSMTKNAF 75 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI+AV+ + + I D P ++GFLG +NP P+ E+E ++ + R + Sbjct: 76 PGYVLIEAVLDKQTRNLILDIPSIMGFLGVDDNPIPLRPDEVEKLLQPEASVEHRTIIEA 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ + Sbjct: 136 PFQVGDSVKVIDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 190 >gi|188589977|ref|YP_001919660.1| transcription antitermination protein NusG [Clostridium botulinum E3 str. Alaska E43] gi|251779965|ref|ZP_04822885.1| transcription termination/antitermination factor NusG [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500258|gb|ACD53394.1| transcription termination/antitermination factor NusG [Clostridium botulinum E3 str. Alaska E43] gi|243084280|gb|EES50170.1| transcription termination/antitermination factor NusG [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 173 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 6/174 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K ++ + L+ L+ ++ +P E VV + G++ S ++ FPG Sbjct: 6 RWYVVHTYSGYENKVKANLEKAIENRSLESLIYDMQVPMEEVVEEKDGKQKVSLKKKFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIK +MTD+ ++ +++T V GF+G G P P++D E+E + V + Sbjct: 66 YVLIKMLMTDESWYVVRNTRGVTGFVGPGSKPVPLSDEEVEAM------GVLEMPVEIDL 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 EVGE + + GP ++ + +K ++ V +FGR T EL +NQVEK+V Sbjct: 120 EVGESIKIISGPLRDSVAKIQEIILDKKKIKALVDMFGRETLAELDFNQVEKLV 173 >gi|260550471|ref|ZP_05824681.1| transcription termination/antitermination factor NusG [Acinetobacter sp. RUH2624] gi|260406386|gb|EEW99868.1| transcription termination/antitermination factor NusG [Acinetobacter sp. RUH2624] gi|325124250|gb|ADY83773.1| transcription antitermination protein [Acinetobacter calcoaceticus PHEA-2] Length = 177 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK + Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177 >gi|187251895|ref|YP_001876377.1| NusG antitermination factor [Elusimicrobium minutum Pei191] gi|186972055|gb|ACC99040.1| NusG anti-termination factor [Elusimicrobium minutum Pei191] Length = 178 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 64/178 (35%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Query: 1 MT--PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M+ WYIV + E K E I ++ + ++ +P+E VV V++ +KV +R Sbjct: 1 MSENKAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKR 60 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 +FFP YVL++ +T + Y I++ V GFLG NP P+ + EI I++ + +P Sbjct: 61 KFFPSYVLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPK 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE GE V +++GPF F G+V+ V+ +K+++ + V +F R TPVEL + QVEKI Sbjct: 120 HVIEFEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177 >gi|256852096|ref|ZP_05557483.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 27-2-CHN] gi|260661334|ref|ZP_05862247.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 115-3-CHN] gi|282934888|ref|ZP_06340120.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 208-1] gi|297205029|ref|ZP_06922425.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii JV-V16] gi|256615508|gb|EEU20698.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 27-2-CHN] gi|260547789|gb|EEX23766.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 115-3-CHN] gi|281301069|gb|EFA93381.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 208-1] gi|297149607|gb|EFH29904.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii JV-V16] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ Y+ E K + R G+ + + P E V +G+K E + F Sbjct: 6 AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEVEEKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ + +++TP V GF+ G G PSP+ D EI I+ ++P Sbjct: 66 PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP- 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K Sbjct: 125 -DIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180 >gi|296120709|ref|YP_003628487.1| transcription termination/antitermination factor NusG [Planctomyces limnophilus DSM 3776] gi|296013049|gb|ADG66288.1| transcription termination/antitermination factor NusG [Planctomyces limnophilus DSM 3776] Length = 204 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++++ SN EK +++ R+ + GL+ EI IP+E+VV + G+K E + + Sbjct: 28 AMLWYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLY 87 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVS 119 PGY++++ ++ D ++ ++ T V F G+ P+P+ D EI ++ + E + P Sbjct: 88 PGYLMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAM 147 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F VG+ V + +G F F G + ++DE +++V V IFGR TPVEL Y Q E+ Sbjct: 148 KIEFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203 >gi|262280707|ref|ZP_06058490.1| transcription termination/antitermination factor NusG [Acinetobacter calcoaceticus RUH2202] gi|299771836|ref|YP_003733862.1| transcription antitermination protein [Acinetobacter sp. DR1] gi|262257607|gb|EEY76342.1| transcription termination/antitermination factor NusG [Acinetobacter calcoaceticus RUH2202] gi|298701924|gb|ADI92489.1| transcription antitermination protein [Acinetobacter sp. DR1] Length = 177 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVLRSLTERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK + Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177 >gi|319942159|ref|ZP_08016476.1| transcription antitermination protein nusG [Sutterella wadsworthensis 3_1_45B] gi|319804294|gb|EFW01183.1| transcription antitermination protein nusG [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY + VYS+ EK ++ R+++SG L E+ +P+E+V VR GRKV SERR + Sbjct: 6 MNWYTLHVYSSMEKSVKNALEERIAQSGELRSSFGEVLLPTEKVHEVRNGRKVTSERRMY 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV I+ M D +H + TP++I FLG NP P++ +E+ +I++ E + +P + Sbjct: 66 PGYVFIQMEMNDATWHLVNSTPRIIEFLGN-NNPVPLSPTEVANILSAAENSSDKPRPKI 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE+GE V + G F F G V VD +KSR++V V IFGR T V+L +N+VEKI Sbjct: 125 EFEIGEMVRIKSGAFKDFTGRVDGVDYDKSRLNVFVSIFGRDTLVDLGFNEVEKI 179 >gi|238855649|ref|ZP_04645949.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 269-3] gi|260664910|ref|ZP_05865761.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii SJ-7A-US] gi|282933598|ref|ZP_06338967.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 208-1] gi|238831715|gb|EEQ24052.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 269-3] gi|260561393|gb|EEX27366.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii SJ-7A-US] gi|281302253|gb|EFA94486.1| transcription termination/antitermination factor NusG [Lactobacillus jensenii 208-1] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ Y+ E K + R G+ + + P E V +G+K E + F Sbjct: 6 AKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPQETKVETVRGKKQEVEEKIF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ + +++TP V GF+ G G PSP+ D EI I+ ++P Sbjct: 66 PGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVEAKKP- 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE+GE V +++G F G + ++ E+K ++ V V +FGR T EL Y+QV+K Sbjct: 125 -DIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK 180 >gi|302671656|ref|YP_003831616.1| transcription termination/antitermination factor NusG [Butyrivibrio proteoclasticus B316] gi|302396129|gb|ADL35034.1| transcription termination/antitermination factor NusG [Butyrivibrio proteoclasticus B316] Length = 213 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+V YS E K ++ + L++ + E+ +P + VV V+ G + N +R+ FPG Sbjct: 45 HWYVVHTYSGYENKVKANLEKTIENRHLENQILEVRVPLQDVVEVKNGARKNVQRKMFPG 104 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+ M D+ ++ +++T V GF+G G P P+TD+EI+ ++ SV F Sbjct: 105 YVLVNMDMNDETWYVVRNTRGVTGFVGPGSKPVPLTDAEIK------PLGIKTDTISVDF 158 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ + V G + G+V+ +D K + V +FGR TPVE+++ +V KI Sbjct: 159 GVGDEIAVIAGVWKDTAGVVQRMDFGKQTATINVDLFGRETPVEISFAEVRKI 211 >gi|21223029|ref|NP_628808.1| transcription antitermination protein [Streptomyces coelicolor A3(2)] gi|256785873|ref|ZP_05524304.1| transcription antitermination protein [Streptomyces lividans TK24] gi|19858845|sp|P36266|NUSG_STRCO RecName: Full=Transcription antitermination protein nusG gi|7248341|emb|CAB77421.1| transcription antitermination protein [Streptomyces coelicolor A3(2)] Length = 300 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 293 SFDQIQK 299 >gi|294630860|ref|ZP_06709420.1| transcription antitermination protein NusG [Streptomyces sp. e14] gi|292834193|gb|EFF92542.1| transcription antitermination protein NusG [Streptomyces sp. e14] Length = 288 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ EK+ ++ R ++ + + +P E +V ++ G + + PGY Sbjct: 101 WYVIHTYAGYEKRVKANLEQRAVSLNVEDFIYQAEVPEEEIVQIKNGERKTVRQNKLPGY 160 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P++ EI ++ Sbjct: 161 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLSLDEIVKMLAPEAEEKAAREAAEAEG 220 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 221 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 280 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 281 SFDQIQK 287 >gi|310829151|ref|YP_003961508.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612] gi|308740885|gb|ADO38545.1| hypothetical protein ELI_3586 [Eubacterium limosum KIST612] Length = 179 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+ YS E K SI + ++ + E+ +P + VV + G++V E++ FPGY Sbjct: 11 WYVAHTYSGYENKVKASIEATVENRHMEDQILEVQVPVQEVVETKDGKRVVREKKLFPGY 70 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V++K MTD ++ +++T V GF+G P P+T +E++++ +++ + E Sbjct: 71 VMVKMFMTDDSWYVVRNTRGVTGFVGPASKPVPLTKAELKNM------GIKQQAIQIDLE 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V V DGPF F GI++ ++ EKS+V V + +FGR TP EL + Q++KI Sbjct: 125 VGDEVNVVDGPFEGFAGIIEEINLEKSKVKVNISMFGRETPTELEFEQIQKI 176 >gi|971288|dbj|BAA06985.1| nusG [Streptomyces coelicolor A3(2)] Length = 300 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 113 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 172 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 173 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 232 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 233 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 292 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 293 SFDQIQK 299 >gi|50954135|ref|YP_061423.1| transcription antitermination factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950617|gb|AAT88318.1| transcription antitermination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 315 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 15/188 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ E++ +I R+ ++ + E+ +P E VV ++ G++ R PG Sbjct: 128 KWYVIHSYAGFERRVKSNIENRMVSMNMEDYIYEVQVPMEDVVEIKNGQRKMVNRVRIPG 187 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117 YVL++ + + + ++ TP V GF+G NP+P+ E ++ + P Sbjct: 188 YVLVRMDLNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVQVDAAPAKGAAK 247 Query: 118 ---------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V FE+GE + + +G FA G + + E ++ V V +F R TPVEL Sbjct: 248 GQKAAARVIPAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVEL 307 Query: 169 AYNQVEKI 176 +++QV K+ Sbjct: 308 SFDQVTKL 315 >gi|19551718|ref|NP_599720.1| transcription antitermination protein NusG [Corynebacterium glutamicum ATCC 13032] gi|62389373|ref|YP_224775.1| transcription antitermination protein NusG [Corynebacterium glutamicum ATCC 13032] gi|7108627|gb|AAF36506.1|AF130462_3 transcriptional antiterminator protein NusG [Corynebacterium glutamicum] gi|14041187|emb|CAC38383.1| NusG protein [Corynebacterium glutamicum] gi|21323240|dbj|BAB97868.1| Transcription antiterminator [Corynebacterium glutamicum ATCC 13032] gi|41324707|emb|CAF19189.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Corynebacterium glutamicum ATCC 13032] Length = 318 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ M D+V+ ++DTP V F+G N +PV ++ + Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAA 243 Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + ++P +V F VGE V + G FAS + + ++D E ++ V V IFGR Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303 Query: 163 VTPVELAYNQVEKI 176 TPV+L+++QVEK+ Sbjct: 304 ETPVDLSFDQVEKV 317 >gi|145294627|ref|YP_001137448.1| transcription antitermination protein NusG [Corynebacterium glutamicum R] gi|140844547|dbj|BAF53546.1| hypothetical protein [Corynebacterium glutamicum R] Length = 318 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ M D+V+ ++DTP V F+G N +PV ++ + Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243 Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + ++P +V F VGE V + G FAS + + ++D E ++ V V IFGR Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303 Query: 163 VTPVELAYNQVEKI 176 TPV+L+++QVEK+ Sbjct: 304 ETPVDLSFDQVEKV 317 >gi|86140286|ref|ZP_01058845.1| putative transcription antitermination protein [Leeuwenhoekiella blandensis MED217] gi|85832228|gb|EAQ50677.1| putative transcription antitermination protein [Leeuwenhoekiella blandensis MED217] Length = 184 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T WY+V+ S E K I +SR L+ + ++ +P+E+VV +R G+K+N ER +F Sbjct: 7 TKDWYVVRAVSGQENKVKGYIEQEISRFNLEDYIEQVLVPTEKVVQIRNGKKINKERVYF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGY++I A + +V H IK VIGFLG G +P P+ SE+ ++ +V+ + Sbjct: 67 PGYIMIHANLGGEVTHMIKSINGVIGFLGETKGGDPVPLRTSEVNRMLGKVDELAVKTDN 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 127 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 184 >gi|262373977|ref|ZP_06067254.1| transcription termination/antitermination factor NusG [Acinetobacter junii SH205] gi|262310988|gb|EEY92075.1| transcription termination/antitermination factor NusG [Acinetobacter junii SH205] Length = 177 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGFEKQVLRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK V Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTV 177 >gi|297624698|ref|YP_003706132.1| NusG antitermination factor [Truepera radiovictrix DSM 17093] gi|297165878|gb|ADI15589.1| NusG antitermination factor [Truepera radiovictrix DSM 17093] Length = 182 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 8/182 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E+K ++ R G+ + ++ +PSE V G +K R+ Sbjct: 1 MSIEWYAVHTYVGHEEKVRSNMMQRARSLGIADKIYQVVVPSEETVEHTGGGKKEVVRRK 60 Query: 60 FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 FPGYV ++ + D + +++TP V GF+GT P+T E ++ + A Sbjct: 61 LFPGYVFVQMDLGDNPDEPNEAWEVVRNTPGVTGFVGTATRAVPLTPEEEARMLG-ITGA 119 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + P V F VG V V+ GPFA F G+V ++ E+ +V V V IFGR TPVEL ++QV Sbjct: 120 KETPKVKVNFSVGNIVQVTSGPFADFTGVVSELNPERGKVKVLVSIFGRETPVELDFSQV 179 Query: 174 EK 175 K Sbjct: 180 IK 181 >gi|163755831|ref|ZP_02162949.1| elongation factor Tu [Kordia algicida OT-1] gi|161324352|gb|EDP95683.1| elongation factor Tu [Kordia algicida OT-1] Length = 183 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K I ++R GL+ V E+ +P+E+V+ +R G+K+N ER +FP Sbjct: 7 KKWYVVRAVSGQENKVKAYIESEITRLGLEDYVEEVLVPTEKVIQIRNGKKINKERVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119 GY++IKA + +V H IK VIGFLG G +P P+ SE+ ++ +V+ + Sbjct: 67 GYIMIKANIAGEVTHVIKSVTNVIGFLGEVKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 127 VIPFTLGETVKVIDGPFNGFNGSVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183 >gi|302330016|gb|ADL20210.1| Transcription anti-termination protein NusG [Corynebacterium pseudotuberculosis 1002] gi|308275699|gb|ADO25598.1| Transcription anti-termination protein NusG [Corynebacterium pseudotuberculosis I19] Length = 295 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + ++ +P E+ V +R G++ +R+ PGY Sbjct: 100 WYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQAVELRDGKRKLVKRKLLPGY 159 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ + D+ + ++DTP V F+G N +PV ++ + Sbjct: 160 VLVRMDINDRSWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQESVAGDGGESNAVN 219 Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + A +P V F+VGE V + G AS + + +D E +++ V IFG Sbjct: 220 AEGEKVVAMPGASSKPKVEVDFQVGEAVTILSGALASVSATISAIDTENNKLQALVSIFG 279 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEK+ Sbjct: 280 RETPVELNFDQVEKV 294 >gi|239918213|ref|YP_002957771.1| transcription termination/antitermination factor NusG [Micrococcus luteus NCTC 2665] gi|281415596|ref|ZP_06247338.1| transcription termination/antitermination factor NusG [Micrococcus luteus NCTC 2665] gi|239839420|gb|ACS31217.1| transcription termination/antitermination factor NusG [Micrococcus luteus NCTC 2665] Length = 275 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 22/193 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ EK+ ++ R+ ++ + EI +P E VV ++ + R PGY Sbjct: 81 WYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVPMEEVVEIKNTTRKIVSRVRIPGY 140 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV------TDSEIEHIMNQVEAAVQR-- 116 VL++ + D + ++ TP V GF+G + + ++ + + ++ Sbjct: 141 VLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSLDEVYEMLAPSVIQEAARSAEKAG 200 Query: 117 --------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 P V FEVGE V V+DGPF + + + E ++ V V IF R Sbjct: 201 LAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETLPATISEIKPEAQQLVVLVSIFER 260 Query: 163 VTPVELAYNQVEK 175 TPV L++NQV K Sbjct: 261 ETPVTLSFNQVTK 273 >gi|153208145|ref|ZP_01946573.1| transcription termination/antitermination factor NusG [Coxiella burnetii 'MSU Goat Q177'] gi|161830723|ref|YP_001596170.1| transcription termination/antitermination factor NusG [Coxiella burnetii RSA 331] gi|165918637|ref|ZP_02218723.1| transcription termination/antitermination factor NusG [Coxiella burnetii RSA 334] gi|120576158|gb|EAX32782.1| transcription termination/antitermination factor NusG [Coxiella burnetii 'MSU Goat Q177'] gi|161762590|gb|ABX78232.1| transcription termination/antitermination factor NusG [Coxiella burnetii RSA 331] gi|165917665|gb|EDR36269.1| transcription termination/antitermination factor NusG [Coxiella burnetii RSA 334] Length = 173 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 6/173 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ YS E V+ + + LD EI +P+E VV +R GRK S+R+FFP Sbjct: 6 KRWYVIHTYSGDENYVVKVLKEHIHLKELDEFFGEIIVPTEEVVEMRSGRKRKSQRKFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++ VM DK ++ P+V+ F+G +TD + I+ +VE +P V Sbjct: 66 GYVLVQMVMNDKTSDLVRSIPQVVRFIGG------ITDKDAAQILRRVEEGETKPKPKVL 119 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V +GPFA FNG+V++V+ EK+R+ V V+IFGR TPVEL + QVEK Sbjct: 120 FEPGEVVRVIEGPFADFNGVVEDVNYEKNRLRVSVLIFGRSTPVELEFGQVEK 172 >gi|256763353|ref|ZP_05503933.1| transcription antitermination protein NusG [Enterococcus faecalis T3] gi|256684604|gb|EEU24299.1| transcription antitermination protein NusG [Enterococcus faecalis T3] Length = 180 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 6/178 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ S E K +I R G+ + + +P E V+ G++ + F Sbjct: 5 ERNWYVLH-LSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ Sbjct: 64 PGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSD 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I Sbjct: 124 LEVAL--GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 179 >gi|294644047|ref|ZP_06721824.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294810199|ref|ZP_06768866.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|292640571|gb|EFF58812.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294442611|gb|EFG11411.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 182 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + L S L V+++ IP+E+V VR G+K+ ER + Sbjct: 7 EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + + Sbjct: 67 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 127 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 181 >gi|194333127|ref|YP_002014987.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271] gi|194310945|gb|ACF45340.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 191 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 105/173 (60%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY +++YS E+K E I + R GL + ++ +P ER V V+ G+K + + FPG Sbjct: 17 RWYALRIYSGHERKVKEGIESEVERLGLADKLLQVYVPYERFVEVKNGKKRSLTKNAFPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI+AV+ + + I D P V+GFLG G+ P+P+ E+E I+ + QR V F Sbjct: 77 YVLIEAVLDKQTRNLIMDIPSVMGFLGVGDVPTPLRPDEVEKILEPESSVEQRSVVEAPF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ + Sbjct: 137 QIGDSVKVVDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189 >gi|229817144|ref|ZP_04447426.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM 20098] gi|229784933|gb|EEP21047.1| hypothetical protein BIFANG_02403 [Bifidobacterium angulatum DSM 20098] Length = 281 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R+ GL+ + +I +P E V + K R PG Sbjct: 96 KWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTEKGKKVLTRVRVPG 155 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ ++ +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 156 YVLIRMWPDEEARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 215 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N Sbjct: 216 AAAKKRKLEVSYAVGDQVTVTDGPFTTMPAVVSDVEPTTQKLTVLVSIFGRDTPVELDFN 275 Query: 172 QVEKI 176 QVEK+ Sbjct: 276 QVEKL 280 >gi|294056232|ref|YP_003549890.1| NusG antitermination factor [Coraliomargarita akajimensis DSM 45221] gi|293615565|gb|ADE55720.1| NusG antitermination factor [Coraliomargarita akajimensis DSM 45221] Length = 192 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 8/180 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P+WY V SN E+KA + + ++ V EI +P+E V V+ G+K R+F+P Sbjct: 10 PQWYAVHTLSNQEQKAKRYLDKFIPVEEMEDYVFEILMPTETVTEVKSGKKKTITRKFYP 69 Query: 63 GYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 GYV +K + D ++ +++ VI F+G G+ PSP+ +EI+ I+ QVE A Sbjct: 70 GYVFVKMRLYDDDGNLLQKPWYFVREAQGVINFVG-GDRPSPLKKAEIDRILQQVEDADG 128 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + +E+GE V V+DGPF + G ++ +D EK ++ V V IFGR TPVEL Y QV++ Sbjct: 129 KEKPKIEYELGEMVKVNDGPFMNLVGKIEEIDPEKGKLKVSVSIFGRYTPVELEYWQVQR 188 >gi|291518242|emb|CBK73463.1| transcription antitermination protein nusG [Butyrivibrio fibrisolvens 16/4] Length = 176 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + ++ +P V + G K ++ + Sbjct: 3 EAKWYVVHTYSGYENKVKTNIEKAIETQKLEEQILDVRVPMVEVTETKDGVKKQVSKKMY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI+ +M D+ ++ +++T V GF+G G P P++++E++ + + ++ V Sbjct: 63 PGYVLIEMIMNDETWYVVRNTRGVTGFVGPGSKPVPLSEAEVKAYL--LGDNTEKVNVEV 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ + V DG + G+VK+++ +K V + V +FGR TPVE+ + V K+ Sbjct: 121 DFEVGDTLSVIDGTWKDTVGVVKSINAKKQTVTISVEMFGRETPVEIDFTDVRKM 175 >gi|226951781|ref|ZP_03822245.1| transcription antitermination protein [Acinetobacter sp. ATCC 27244] gi|294649029|ref|ZP_06726475.1| transcription antitermination protein NusG [Acinetobacter haemolyticus ATCC 19194] gi|226837321|gb|EEH69704.1| transcription antitermination protein [Acinetobacter sp. ATCC 27244] gi|292825060|gb|EFF83817.1| transcription antitermination protein NusG [Acinetobacter haemolyticus ATCC 19194] Length = 177 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGFEKQVMRSLNERIQRSTVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNLGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK V Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTV 177 >gi|189485233|ref|YP_001956174.1| transcription antitermination factor NusG [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287192|dbj|BAG13713.1| transcription antitermination factor NusG [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 176 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+V VYS E K + + ++ + +++I +P+E V+ V++ +K +R+F Sbjct: 1 MANQWYVVHVYSGHEYKVKKGLEMTVANLNMQDTISQILVPTEEVIEVKQNKKKIKKRKF 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVS 119 +PGY+ ++ + + Y I++T V GFLG G P P++ E+E+I+N V +P Sbjct: 61 YPGYIFVEMTINNSTYWLIRNTAGVTGFLG-GVKPIPISQFEVENILNTVANPDTSKPRP 119 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V FE E + + +GPF F GIV+ V+ E+ ++ V V IFGR TPVEL + QVEK+ Sbjct: 120 AVSFEKEENIRIIEGPFKHFIGIVEEVNHERGKLRVMVTIFGRHTPVELGFLQVEKM 176 >gi|289769765|ref|ZP_06529143.1| transcription antitermination protein nusG [Streptomyces lividans TK24] gi|289699964|gb|EFD67393.1| transcription antitermination protein nusG [Streptomyces lividans TK24] Length = 295 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 108 WYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 167 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 168 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 227 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 228 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 287 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 288 SFDQIQK 294 >gi|291295566|ref|YP_003506964.1| NusG antitermination factor [Meiothermus ruber DSM 1279] gi|290470525|gb|ADD27944.1| NusG antitermination factor [Meiothermus ruber DSM 1279] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 9/182 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERR 59 M+ WY V Y E+K +++ R+ G+ + ++ IP+E VV R+G +K R+ Sbjct: 1 MSIEWYAVHTYVGHEEKVKQNLEQRVKVLGMQDKIFQVLIPTEEVVEHREGGKKEVVRRK 60 Query: 60 FFPGYVLIKAVMTDKV------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--VE 111 +PGY+ + + D + +++TP V GF+GT +P P+T E++H++ + Sbjct: 61 LYPGYIYVLVDLGDTPGEVNEAWEVVRNTPGVTGFVGTATHPVPLTPDEVQHLLEIAGLA 120 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + P V F+ G+ V V GPFA F G+V V+ E+ +V V V IFGR TPVEL ++ Sbjct: 121 GKKETPKPQVTFKEGDVVRVVSGPFAEFTGVVSEVNLERQKVKVLVSIFGRETPVELEFS 180 Query: 172 QV 173 QV Sbjct: 181 QV 182 >gi|152991722|ref|YP_001357443.1| transcription antitermination protein NusG [Sulfurovum sp. NBC37-1] gi|151423583|dbj|BAF71086.1| transcriptional antitermination factor NusG [Sulfurovum sp. NBC37-1] Length = 176 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q YS E +I ++ G++ V I +P+E V+ V+ G K +ER Sbjct: 1 MAFQWYAIQTYSGSELSVKRAIEQLVADYGMEDKVERIVVPTEEVIEVKNGEKKITERTL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ P+V F+G + P+ +T+++I+ I++++ P Sbjct: 61 YPGYAFAHIDLDTDLWHKIQSLPRVSRFIGEQKTPTALTEADIKVILDKM-EQKAAPRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V FE GE V + DGPFA+F G+V+ D + ++ + V IFGR TPVE+ Y QVEKI+ Sbjct: 120 VDFETGEMVRIVDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEILYTQVEKII 176 >gi|118475193|ref|YP_892473.1| transcription antitermination protein NusG [Campylobacter fetus subsp. fetus 82-40] gi|118414419|gb|ABK82839.1| transcription termination/antitermination factor NusG [Campylobacter fetus subsp. fetus 82-40] Length = 176 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +ER Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + P+P++D +I I+ +V P Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINLILEKVNKRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V V++GPFA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 120 ISFETGEVVRVTEGPFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 176 >gi|167041784|gb|ABZ06526.1| putative transcription termination factor nusG [uncultured marine microorganism HF4000_093M11] Length = 249 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q +S E + ++I +L GL+ LV EI IPSE V+ + G+K +++FPG Sbjct: 74 KWYILQAFSGYEGRVEQTIQEKLKIEGLEDLVNEIFIPSEDVIRTKDGKKRKVNQKYFPG 133 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVLI +T ++H + + +V GF+G + P P+ +SE+E I +QV Q+ S Sbjct: 134 YVLIHMELTPVLWHLLMNVNRVSGFIGGTQKNPLPLDESELETIRSQVNERFQQKASEDE 193 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F +G++V +++G F +F+G++ ++ E+ ++ V V IFGR TPVE+ + +V+ +V Sbjct: 194 FSLGQKVTITEGSFGNFSGVIDEINLERRKLKVLVSIFGRPTPVEVEFEKVKHVV 248 >gi|170782938|ref|YP_001711272.1| transcription antitermination protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157508|emb|CAQ02699.1| transcription antitermination protein [Clavibacter michiganensis subsp. sepedonicus] Length = 345 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120 YVL++ + + + ++ TP V GF+G NP+P+ E ++ + + Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276 Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 V FE+GE + + +G FA G + + E ++ V V +F R TPVE Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336 Query: 168 LAYNQVEKI 176 L+++QV K+ Sbjct: 337 LSFDQVTKL 345 >gi|50083574|ref|YP_045084.1| transcription antitermination protein [Acinetobacter sp. ADP1] gi|49529550|emb|CAG67262.1| transcription antitermination protein [Acinetobacter sp. ADP1] Length = 177 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNERIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK + Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKTI 177 >gi|260585128|ref|ZP_05852869.1| transcription termination/antitermination factor NusG [Granulicatella elegans ATCC 700633] gi|260157216|gb|EEW92291.1| transcription termination/antitermination factor NusG [Granulicatella elegans ATCC 700633] Length = 184 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R+S G++ + + +P E V V+ G++ + + F Sbjct: 5 AKEWYVLHTYSGYENKVKSNIELRISSMGMEENIFRVIVPEEEEVEVKDGKEKVTINKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +M+D+ ++ +++TP V GF+G+ G PSP+ E++ ++ ++ P Sbjct: 65 PGYVLVEMIMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVDTLLGRLGVPTHAP- 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + +VG+ V +++G F +G V +D+EK +V V + +FGR T EL + QV+ Sbjct: 124 VDLHAKVGDYVIITEGAFDGMSGKVTEIDDEKQKVKVTIEMFGRETIAELEFYQVK 179 >gi|295837048|ref|ZP_06823981.1| transcription termination/antitermination factor NusG [Streptomyces sp. SPB74] gi|197698951|gb|EDY45884.1| transcription termination/antitermination factor NusG [Streptomyces sp. SPB74] Length = 284 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 97 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 156 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 157 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 216 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 217 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 276 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 277 SFDQIQK 283 >gi|93007006|ref|YP_581443.1| NusG antitermination factor [Psychrobacter cryohalolentis K5] gi|92394684|gb|ABE75959.1| transcription antitermination protein nusG [Psychrobacter cryohalolentis K5] Length = 176 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFP Sbjct: 1 MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ M D +H +KD P+++GF+G E P+P+T+ E + I+N++ P Sbjct: 61 GYVLIQMDMNDNTWHIVKDCPRIMGFVGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+ Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175 >gi|116493232|ref|YP_804967.1| transcription antitermination protein nusG [Pediococcus pentosaceus ATCC 25745] gi|116103382|gb|ABJ68525.1| transcription antitermination protein nusG [Pediococcus pentosaceus ATCC 25745] Length = 181 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K ++ R G+ + + +P E V + G ++ F Sbjct: 5 EKNWYVLHTYSGYENKVKNNLDSRAKSMGMAEYIFRVVVPEEEEVETKNGEDKIVKKNEF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+ G+G P+P+ E+E I+ ++ Sbjct: 65 PGYVLVEMIMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPDEVERILRRLGMTA--RH 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + EVGE V + DG F G + VD +V V + +FGR T EL Q++KI Sbjct: 123 ADIEVEVGELVKIVDGAFEGLTGKITEVDNNNMKVKVNIDMFGRETSTELDIEQIDKI 180 >gi|255320104|ref|ZP_05361296.1| transcription termination/antitermination factor NusG [Acinetobacter radioresistens SK82] gi|262370138|ref|ZP_06063465.1| transcription antitermination protein [Acinetobacter johnsonii SH046] gi|262379961|ref|ZP_06073116.1| transcription termination/antitermination factor NusG [Acinetobacter radioresistens SH164] gi|255302822|gb|EET82047.1| transcription termination/antitermination factor NusG [Acinetobacter radioresistens SK82] gi|262298155|gb|EEY86069.1| transcription termination/antitermination factor NusG [Acinetobacter radioresistens SH164] gi|262315177|gb|EEY96217.1| transcription antitermination protein [Acinetobacter johnsonii SH046] Length = 177 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDETWHIVKECPKVLGFIGGTAEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVLYEKSRLTLTINVFNRPTQVELEFRQVEK 175 >gi|167764384|ref|ZP_02436509.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC 43183] gi|167697789|gb|EDS14368.1| hypothetical protein BACSTE_02768 [Bacteroides stercoris ATCC 43183] Length = 190 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 15 EKKWYVLRAISGKETKVKEYLEADIKNSDLGDYVSQVLIPTEKVYQVRNGKKIVKERSYL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG E P P+ SE+ I+ V+ + Sbjct: 75 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQDAGEELN 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+ GPF+ F+GI++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 135 IPYVVGETVKVNYGPFSGFSGIIEEVNTEKKKLKVMVKIFGRKTPLELGFMQVEK 189 >gi|295133023|ref|YP_003583699.1| transcription antitermination protein [Zunongwangia profunda SM-A87] gi|294981038|gb|ADF51503.1| transcription antitermination protein [Zunongwangia profunda SM-A87] Length = 183 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K + I +S G++ V ++ +P+E+V+ +R G+K+N ER +FP Sbjct: 7 KKWYVVRAVSGQENKVKDYIEREISHMGMEDWVDQVLVPTEKVIQIRNGKKINKERVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119 GY++I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ + Sbjct: 67 GYIMIQANLGGEIPHIIKGINGVIGFLGETKGGDPVPLRQSEVNRMLGKVDELSVKTDNV 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 127 AIPFTLGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183 >gi|291546353|emb|CBL19461.1| transcription antitermination protein nusG [Ruminococcus sp. SR1/5] Length = 173 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G +++ F Sbjct: 4 AAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQDVVEMKNGTSRQVQKKMF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +Q+P V Sbjct: 64 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------MPLGIQKPDIEV 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K Sbjct: 118 DFAEGDMVVVTGGAWKDTAGVITGINMQKQTVTINVELFGRETPVEISFTEIKK 171 >gi|282882465|ref|ZP_06291086.1| transcription termination/antitermination factor NusG [Peptoniphilus lacrimalis 315-B] gi|300814586|ref|ZP_07094837.1| transcription termination/antitermination factor NusG [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297607|gb|EFA90082.1| transcription termination/antitermination factor NusG [Peptoniphilus lacrimalis 315-B] gi|300511205|gb|EFK38454.1| transcription termination/antitermination factor NusG [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 5/174 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K +++ ++ ++ L+ +I +P E V + G ER+ F Sbjct: 10 AAKWYVIHTYSGYENKVKDTMEAMVANRKMEDLILDIRVPMENYVETKDGLSKAKERKMF 69 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K +M D+ ++ +++T V GF+G P P+++ E+ + Sbjct: 70 PSYVLVKMIMNDETWYLVRNTRGVTGFVGPASKPVPLSEEEVL-----LLGVTDNKELFG 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +E+GE V V GPF GI+ + + EK +V V + +FGR T VEL +NQ+ K Sbjct: 125 NYEIGETVRVISGPFNELVGIIDSFNYEKGKVKVSISMFGRDTLVELDFNQIIK 178 >gi|171914826|ref|ZP_02930296.1| Transcription antiterminator [Verrucomicrobium spinosum DSM 4136] Length = 189 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 7/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ V + E++ E++ R+ + V E+ +P+ERV V+KG++ S R+ FPG Sbjct: 10 QWYVLHVRAGLEQRVRENMERRIQSEEMGEFVFEVVVPTERVSEVKKGKRSESTRKVFPG 69 Query: 64 YVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 Y+L + D + +H +K+T + F GT ++P P+ E+E ++ QV + Sbjct: 70 YILANMWLLDENNKPVVQTWHFVKETDGFLNFAGTKDHPIPLRPKEVEVLLAQVREREEG 129 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VG+ V V+DGPF S GI++ +D EK + V V IFGR TPV+L Y QVEK Sbjct: 130 VKPKFMFSVGDTVRVADGPFESQTGIIEEIDPEKGLLRVSVNIFGRSTPVDLEYWQVEK 188 >gi|259047919|ref|ZP_05738320.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit [Granulicatella adiacens ATCC 49175] gi|259035416|gb|EEW36671.1| anaerobic ribonucleoside-triphosphate reductase, alpha subunit [Granulicatella adiacens ATCC 49175] Length = 181 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 101/177 (57%), Gaps = 4/177 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K ++ R+ G++ + + +P E V V+ G+ + + Sbjct: 1 MEKEWYVLHTYSGYENKVKSNLLSRIQSMGMEENIFRVIVPEEEEVEVKDGKTKTTVEKT 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VM+D+ ++ +++TP V GF+G+ G PSP+ E+E I+ ++ V P Sbjct: 61 FPGYVLVEMVMSDQAWYVVRNTPGVTGFVGSHGAGSKPSPLLPEEVEAILGRIGEKVHAP 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + VG+ V +++G F +G V +D EK ++ V + +FGR T +L ++QV+ Sbjct: 121 -VDLHVSVGDYVIITEGAFNDMSGKVVELDHEKQKIKVAIEMFGRETIADLEFHQVK 176 >gi|313888133|ref|ZP_07821807.1| transcription termination/antitermination factor NusG [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845823|gb|EFR33210.1| transcription termination/antitermination factor NusG [Peptoniphilus harei ACS-146-V-Sch2b] Length = 180 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 5/172 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EKK ++ + G++ ++ +I IP E V + G ER+ FP Sbjct: 13 KWYVIHTYSGYEKKVKANMEAMVHNRGMEDVIFDIRIPMEDYVETKDGVSKAKERKMFPS 72 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+ +M D+ ++ +++T V GF+G P P+TD E+ + + Sbjct: 73 YVLVNMIMNDETWYLVRNTRGVTGFVGPASKPVPLTDEEVL-----LLGVTDNKELFDNY 127 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E+GE V V +GPF G + + + +K +V V + +FGR T VEL +NQ+ K Sbjct: 128 EIGELVKVINGPFKDLVGKIDDFNYDKGKVKVCISMFGRDTIVELDFNQIIK 179 >gi|262375153|ref|ZP_06068387.1| transcription termination/antitermination factor NusG [Acinetobacter lwoffii SH145] gi|262310166|gb|EEY91295.1| transcription termination/antitermination factor NusG [Acinetobacter lwoffii SH145] Length = 177 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + E+ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE + V DGPF F G+V+ V EKSR+ + + +F R T VEL + QVEK Sbjct: 122 MFEPGEELLVVDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEK 175 >gi|227494532|ref|ZP_03924848.1| transcription termination/antitermination factor [Actinomyces coleocanis DSM 15436] gi|226832266|gb|EEH64649.1| transcription termination/antitermination factor [Actinomyces coleocanis DSM 15436] Length = 245 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E++ ++ R+ +++ + E +P E V + K K ER PGY Sbjct: 64 WYVIHTYSGHERRVKANLEQRIQTQNMENFIFEAEVPMETVTELTKSGKKTVERPRIPGY 123 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT---------DSEIEHIMNQVEAAVQ 115 V+++ +MT+ + +KDTP V+GF+G +NP P++ + + A Sbjct: 124 VIVRTIMTEASWRVVKDTPAVLGFVGDAQNPVPLSIDEVVSLLAPMWEASALKKAAATEI 183 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ FE+GE V V DGPF S V +D ++ V ++IF R TP+EL ++QV+K Sbjct: 184 ITAPAITFEIGESVTVVDGPFESMEATVTEIDAAHRKLTVSILIFERETPIELNFDQVKK 243 Query: 176 I 176 + Sbjct: 244 L 244 >gi|293610085|ref|ZP_06692386.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827317|gb|EFF85681.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 177 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ YS EK+ + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFP Sbjct: 2 KRWYIIHAYSGYEKQVMRSLTERIQRSAVAGSFGDVLVPTEEVVEMKDGKKRKSERKFFP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D +H +K+ PKV+GF+G E P+P+T E + I+ +V + P Sbjct: 62 GYVLVEMEMNDDTWHIVKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKT 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE + V DGPF F G+V+ V +KSR+ + + +F R T VEL + QVEK + Sbjct: 122 MFEPGEELLVIDGPFTDFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 177 >gi|120436720|ref|YP_862406.1| transcription antitermination protein [Gramella forsetii KT0803] gi|117578870|emb|CAL67339.1| transcription antitermination protein [Gramella forsetii KT0803] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K + I + GL + ++ +P+E+V+ +R G+KVN ER +F Sbjct: 8 EKKWYVVRAVSGQENKVKDYIEKEIEYLGLQDAIDQVLVPTEKVIQIRNGKKVNKERVYF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGYV+I+A + ++ H IK VIGFLG G +P P+ SE+ ++ +V+ + Sbjct: 68 PGYVMIQANIGGEIPHIIKGINGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELSVKADN 127 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 128 VAIPFTIGETIKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185 >gi|160892863|ref|ZP_02073652.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50] gi|156865422|gb|EDO58853.1| hypothetical protein CLOL250_00393 [Clostridium sp. L2-50] Length = 174 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V YS E K I + L + E+++P E + V+ G + R+ F Sbjct: 6 SAKWYVVHTYSGYENKVKADIEKTIENRKLQDQILEVSVPVEESIEVKNGVQKAVTRKLF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ +M D ++ +++T V GF+G G P P++D E++++ + + + Sbjct: 66 PGYVLLNMIMNDATWYVVRNTRGVTGFVGPGSKPVPLSDDEMKYL------GINKETIVI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V+ G + G +K ++ K + ++V IFGR T VE+A+ ++K+ Sbjct: 120 DAEVGDMVEVTAGAWEGTVGSIKAINPSKQTITIDVEIFGRATSVEIAFADIKKL 174 >gi|225164274|ref|ZP_03726545.1| NusG antitermination factor [Opitutaceae bacterium TAV2] gi|224801116|gb|EEG19441.1| NusG antitermination factor [Opitutaceae bacterium TAV2] Length = 192 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 8/180 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ + S E K I ++ L + E+ +P+E V V+ G+K R+ +PG Sbjct: 12 QWFALHTLSGQENKVKLYIDKFIAPEELSDYIFEVLLPTEVVSEVKNGKKTTKTRKLYPG 71 Query: 64 YVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 YV + A + D+ ++ +K+T VIGF+G G+ P+ + SEI+ I ++EAA + Sbjct: 72 YVFVHAKLFDEEKKLINKPWYFMKETAGVIGFVG-GDKPAALRQSEIDEIRARIEAASGK 130 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V +EVGE + ++DG FA+ G + +D E+ ++ + V IFGR TPVEL Y QV++I Sbjct: 131 EVPKVSYEVGEELKITDGAFANLTGRIDEIDPERGKLKISVSIFGRFTPVELEYWQVQRI 190 >gi|302521301|ref|ZP_07273643.1| transcription termination/antitermination factor NusG [Streptomyces sp. SPB78] gi|302430196|gb|EFL02012.1| transcription termination/antitermination factor NusG [Streptomyces sp. SPB78] Length = 272 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 16/187 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + + PGY Sbjct: 85 WYVIHTYAGYENRVKTNLEQRAVSLNVEEFIFQAEVPQEEVVQIKNGDRKTIRQNKLPGY 144 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ +T++ + +++TP V GF+G +P P+T EI ++ Sbjct: 145 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEG 204 Query: 115 ------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + V + FEVG+ V V+DGPFA+ + ++ + +V V IFGR TPVEL Sbjct: 205 KPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVEL 264 Query: 169 AYNQVEK 175 +++Q++K Sbjct: 265 SFDQIQK 271 >gi|157165039|ref|YP_001466540.1| transcription antitermination protein NusG [Campylobacter concisus 13826] gi|112800025|gb|EAT97369.1| transcription termination/antitermination factor NusG [Campylobacter concisus 13826] Length = 176 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER Sbjct: 1 MSHKWYAIQTYAGSEMAVKRGIENLVRDHGIEDQLKEVIVPTEDVIEIKNGKQKINERTL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + P+P+T+ +I I+ +V+ P Sbjct: 61 YPGYAFACLDLDTALWHKIQSLPKVGRFIGEAKKPTPLTEKDINTILEKVQKRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +FFE GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+ Sbjct: 120 IFFEDGESVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVDILYSQVEKII 176 >gi|312135327|ref|YP_004002665.1| nusg antitermination factor [Caldicellulosiruptor owensensis OL] gi|311775378|gb|ADQ04865.1| NusG antitermination factor [Caldicellulosiruptor owensensis OL] Length = 174 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKA+M +++++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAIMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V + GPF+ F G V +++E+ +V V + +FGR TPVE Y+QVE++ Sbjct: 122 EVGDNVKIVSGPFSDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174 >gi|148273972|ref|YP_001223533.1| putative transcription antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831902|emb|CAN02873.1| putative transcription antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 340 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 16/189 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y+ E++ +I R+ ++ + +I +P E VV ++ G++ R PG Sbjct: 152 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 211 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS--- 120 YVL++ + + + ++ TP V GF+G NP+P+ E ++ + + Sbjct: 212 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 271 Query: 121 -------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 V FE+GE + + +G FA G + + E ++ V V +F R TPVE Sbjct: 272 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 331 Query: 168 LAYNQVEKI 176 L+++QV K+ Sbjct: 332 LSFDQVTKL 340 >gi|293189019|ref|ZP_06607751.1| transcription termination/antitermination factor NusG [Actinomyces odontolyticus F0309] gi|292822050|gb|EFF80977.1| transcription termination/antitermination factor NusG [Actinomyces odontolyticus F0309] Length = 256 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------NQ 109 PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247 Query: 170 YNQVEKI 176 ++QVEK+ Sbjct: 248 FDQVEKL 254 >gi|154508676|ref|ZP_02044318.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC 17982] gi|153798310|gb|EDN80730.1| hypothetical protein ACTODO_01181 [Actinomyces odontolyticus ATCC 17982] Length = 256 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K Sbjct: 68 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHV 127 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------NQ 109 PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ Sbjct: 128 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAA 187 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + FEVGE V V+DGPF + + + + E ++ V V IF R TP+EL Sbjct: 188 KDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELG 247 Query: 170 YNQVEKI 176 ++QVEK+ Sbjct: 248 FDQVEKL 254 >gi|304439415|ref|ZP_07399326.1| transcription termination/antitermination factor NusG [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372111|gb|EFM25706.1| transcription termination/antitermination factor NusG [Peptoniphilus duerdenii ATCC BAA-1640] Length = 179 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY++ YS E K ++ + ++ ++ +I +P E V + G + ER+ F Sbjct: 10 TAKWYVIHTYSGHENKVKANMEAMVQNRHMEDVILDIQVPMEEYVEEKDGVAKSKERKLF 69 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K +M D+ ++ +++T V GF+G G P P++D E+ + + Sbjct: 70 PSYVLVKMIMNDETWYLVRNTRGVTGFVGPGSKPVPLSDEEVLAL-----GVADKKEFFG 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V DGPF F G++ + EK +V V + +FGR T VEL++NQ+ KI Sbjct: 125 GFEVGESVKVKDGPFEDFVGVIDAMSYEKGKVDVVISMFGRDTKVELSFNQIVKI 179 >gi|304384444|ref|ZP_07366848.1| transcription termination/antitermination factor NusG [Prevotella marshii DSM 16973] gi|304334464|gb|EFM00753.1| transcription termination/antitermination factor NusG [Prevotella marshii DSM 16973] Length = 180 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+++ S E K E I L + L V+++ IP ER ++R G+++ E+ Sbjct: 6 MRWYVLRAVSGKEAKVKEYIEAELKHNALLSSHVSQVLIPLERHTALRNGKRIVKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV I+A + + H ++ P V+GFLG ENP+PV SEI ++ E + + Sbjct: 66 PGYVFIEADLNGDIAHLLRFMPNVLGFLGGMENPTPVQQSEINRMLGNAEESELMYEADN 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V DGPF+ FNGI++ V+ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 126 PYAVNESVKVCDGPFSGFNGIIEEVNAEKRKLKVMVKIFGRKTPLELSFMQVEK 179 >gi|281358732|ref|ZP_06245208.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281314759|gb|EFA98796.1| NusG antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 8/181 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ S E K + I +L G V E IP+E+V VR+G+K + R+ FPG Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQT-GDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPG 72 Query: 64 YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 Y+ ++ + +K ++ I+ V+GFLG P+ +T+SE+E IM +A Sbjct: 73 YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPE 132 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FEVGE V + DG F +F G ++ +D E+ ++ + V IFGR TPVEL + QVE+ Sbjct: 133 VKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVERT 192 Query: 177 V 177 V Sbjct: 193 V 193 >gi|71066447|ref|YP_265174.1| transcription antitermination protein nusG [Psychrobacter arcticus 273-4] gi|71039432|gb|AAZ19740.1| transcription antitermination protein nusG [Psychrobacter arcticus 273-4] Length = 176 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYIVQ +S EK+ S+ R++RS ++ +P+E VV ++ G+K SER+FFP Sbjct: 1 MRWYIVQAFSGYEKQVQRSLTDRINRSEFAEFFGDVLVPTEEVVEMKDGKKRKSERKFFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVLI+ M D +H +KD P+++GF+G E P+P+T+ E + I+N++ P Sbjct: 61 GYVLIQMEMNDNTWHIVKDCPRIMGFIGGTPETPAPITEVEADRILNRLNQTETDPRPKT 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE + V DGPF F G+V+ VD EKS++H+ V +F R T VEL +++VEK+ Sbjct: 121 LFEPGEELLVIDGPFTDFKGLVEKVDYEKSKLHLTVNVFNRPTQVELEFSKVEKL 175 >gi|150025253|ref|YP_001296079.1| transcription antitermination protein NusG [Flavobacterium psychrophilum JIP02/86] gi|149771794|emb|CAL43268.1| Transcription antitermination protein NusG [Flavobacterium psychrophilum JIP02/86] Length = 183 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K I ++R L V+++ +P+E+VV+V+ G+K+ ++ +F Sbjct: 7 KKWYVVRAVSGQENKVKAYIEAEINRLELSDYVSQVLVPTEKVVTVKDGKKIIKDKVYFS 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119 GYV+++A + ++ H IK VIGFLG +P P+ +E+ ++ +V+ AV Sbjct: 67 GYVMVEANLAGEITHIIKSITSVIGFLGETKNGDPVPLRIAEVNRMLGKVDELAVTADHG 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F VGE V V+DGPF FNG V+ ++EEK ++ V V IFGR TP+EL++ QVEK+ Sbjct: 127 SIPFTVGETVKVTDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSFMQVEKV 183 >gi|171741354|ref|ZP_02917161.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC 27678] gi|283455289|ref|YP_003359853.1| putative transcription antitermination protein nusG [Bifidobacterium dentium Bd1] gi|171276968|gb|EDT44629.1| hypothetical protein BIFDEN_00434 [Bifidobacterium dentium ATCC 27678] gi|283101923|gb|ADB09029.1| putative transcription antitermination protein nusG [Bifidobacterium dentium Bd1] Length = 270 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ GL+ + +I +P E V + K R PG Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G + P+P++ E+ +M + A+ Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264 Query: 172 QVEKI 176 QVEK+ Sbjct: 265 QVEKL 269 >gi|288801076|ref|ZP_06406532.1| transcription termination/antitermination factor NusG [Prevotella sp. oral taxon 299 str. F0039] gi|288332010|gb|EFC70492.1| transcription termination/antitermination factor NusG [Prevotella sp. oral taxon 299 str. F0039] Length = 181 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I + + L V+++ IP E+ S+R G++V +E+ Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAEIKHNTLLSSYVSQVLIPLEKHASLRNGKRVITEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV ++AV+ V HT++ P V+GFLG +NPSPV +EI ++ E ++ Sbjct: 66 PGYVFVEAVLKGDVAHTLRFIPNVLGFLGGLDNPSPVPQAEINRMLGTAEETEVADEINI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 126 PYEVNETVKVTDGPFSGFSGVIEEVNSEKHKLKVMVKIFGRKTPLELSFMQVEK 179 >gi|298490349|ref|YP_003720526.1| NusG antitermination factor ['Nostoc azollae' 0708] gi|298232267|gb|ADI63403.1| NusG antitermination factor ['Nostoc azollae' 0708] Length = 209 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK ++ SE + Sbjct: 24 EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPHTPTVKIRKDGKRQPSEEKV 83 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ ++ D + +++T VI F+G + + Sbjct: 84 FPGYVLVRMMLNDDTWQVVRNTTHVINFVGAEQKRGTGKGRGHVKPVPLSNSEVERIFKQ 143 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 144 TSEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203 Query: 172 QVEK 175 QVEK Sbjct: 204 QVEK 207 >gi|269121551|ref|YP_003309728.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386] gi|268615429|gb|ACZ09797.1| NusG antitermination factor [Sebaldella termitidis ATCC 33386] Length = 198 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 15/190 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS EKK + R+ L V I +P E ++ ++G+ V R+ F Sbjct: 9 EKKWYIIHTYSGYEKKVKADLEKRVVTLNLTDRVFRILVPEEEIMEEKRGKMVKVPRKLF 68 Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 PGYV+++ + ++ I++T V GF+G G +P P+ D E + +++ Sbjct: 69 PGYVMVEMLSKKEENDLGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLADDEAKSLLS 128 Query: 109 QV--EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 ++ + + P + + EVGE+V V +G F + + VD E RV V V +FGR+TPV Sbjct: 129 KIGLDESASAPKARLDLEVGEKVIVKNGAFENQEAEIAEVDHEHGRVKVMVEVFGRMTPV 188 Query: 167 ELAYNQVEKI 176 EL Y++V KI Sbjct: 189 ELEYHEVRKI 198 >gi|306823644|ref|ZP_07457019.1| transcription termination/antitermination factor NusG [Bifidobacterium dentium ATCC 27679] gi|304553351|gb|EFM41263.1| transcription termination/antitermination factor NusG [Bifidobacterium dentium ATCC 27679] Length = 270 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ GL+ + +I +P E V + K R PG Sbjct: 85 KWYVLHTYSGYEKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPG 144 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G + P+P++ E+ +M + A+ Sbjct: 145 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 204 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N Sbjct: 205 AAAKKRTLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 264 Query: 172 QVEKI 176 QVEK+ Sbjct: 265 QVEKL 269 >gi|238916244|ref|YP_002929761.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC 27750] gi|238871604|gb|ACR71314.1| transcriptional antiterminator NusG [Eubacterium eligens ATCC 27750] Length = 178 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 1/172 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + L + E+ +P E VV ++ G K ++++ FPG Sbjct: 5 KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVF 122 YVL+K VM D ++ +++T V GF+G G P P+T +EI+++ +E + +PV Sbjct: 65 YVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFA 124 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +VG++V + G + G + N++E K + + V +FGR TPVE+ + V+ Sbjct: 125 GKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >gi|312130984|ref|YP_003998324.1| transcription antitermination protein nusg [Leadbetterella byssophila DSM 17132] gi|311907530|gb|ADQ17971.1| transcription antitermination protein nusG [Leadbetterella byssophila DSM 17132] Length = 184 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+V+ S EKK I +R L + E+ IP+E+++ VR G+K E+ FFPG Sbjct: 5 NWYVVRAVSQQEKKIKNYIENEAARRKLTDFIPEVLIPTEKIIEVRNGKKRVREKNFFPG 64 Query: 64 YVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120 Y+L+ A + + H IK P VIGFLG S + + +N++ P Sbjct: 65 YILVNADLNNGEVLHLIKSIPGVIGFLGKNGGASIEPEPLRQSEVNRILGVQDAPQEEAI 124 Query: 121 ---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F GE V V DGPF F G V+ + +EK ++ V V IFGR TPVEL Y QVEK+ Sbjct: 125 DAGVSFVTGETVKVIDGPFNGFEGTVEEIFDEKKKLSVSVKIFGRSTPVELGYLQVEKL 183 >gi|307691690|ref|ZP_07633927.1| NusG antitermination factor [Ruminococcaceae bacterium D16] Length = 174 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+V YS E +I + L ++ EI+IP E V + ER+ FPG Sbjct: 6 NWYVVHTYSGYENTVKATIEKYVENRHLQDMIHEISIPLETVTEITDNGPKEVERKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K VM D+ +H +++ V GFLG G P P+++ ++ + V++ V + Sbjct: 66 YVLVKMVMNDETWHVVRNIRGVTGFLGEGNKPIPLSEDDVASL------GVEKREVVVGY 119 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V ++DG SF G V+ +D E+ +V V V +FGR TPVEL +QVE + Sbjct: 120 QVGDSVKITDGALESFLGTVEELDLERGKVRVVVSMFGRETPVELELDQVEPM 172 >gi|212695317|ref|ZP_03303445.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855] gi|237711661|ref|ZP_04542142.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA] gi|237725897|ref|ZP_04556378.1| transcription anti-termination protein [Bacteroides sp. D4] gi|265753081|ref|ZP_06088650.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_33FAA] gi|212662227|gb|EEB22801.1| hypothetical protein BACDOR_04857 [Bacteroides dorei DSM 17855] gi|229435705|gb|EEO45782.1| transcription anti-termination protein [Bacteroides dorei 5_1_36/D4] gi|229454356|gb|EEO60077.1| transcription anti-termination protein [Bacteroides sp. 9_1_42FAA] gi|263236267|gb|EEZ21762.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_33FAA] Length = 180 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQESGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK Sbjct: 125 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179 >gi|225351134|ref|ZP_03742157.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158590|gb|EEG71832.1| hypothetical protein BIFPSEUDO_02721 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 265 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ G++ + +I +P E V + K R PG Sbjct: 80 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 139 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G + P+P++ E+ +M + A+ Sbjct: 140 YVLIRMLPDENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKP 199 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N Sbjct: 200 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 259 Query: 172 QVEKI 176 QVEK+ Sbjct: 260 QVEKL 264 >gi|323342433|ref|ZP_08082665.1| transcription antitermination factor NusG [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463545|gb|EFY08739.1| transcription antitermination factor NusG [Erysipelothrix rhusiopathiae ATCC 19414] Length = 181 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E + E++ R+ G++ + I + E+ + + G+KV R F Sbjct: 6 EKKWYVVNTYSGHENRVKENLERRVESMGIEDALFRILVAEEKEIEYKNGKKVEKLRNLF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGY+ ++ +MTD+ ++ +++TP V GF+ G G P PV+D EIE I+ ++ + Q+ Sbjct: 66 PGYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSDEEIESILRRMGMSDQK-- 123 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F+ G+ V + GPFA G V +++ + + ++FGR TP E++Y +E + Sbjct: 124 LIVNFKEGDTVRILSGPFAGIEGTVDSMNNDSQTAMILTILFGRETPTEISYTDIEAL 181 >gi|299143702|ref|ZP_07036782.1| transcription termination/antitermination factor NusG [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518187|gb|EFI41926.1| transcription termination/antitermination factor NusG [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 176 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K ++ + ++ L+ +I +P E V ++G K ER+ F Sbjct: 7 EAKWYVIHTYSGHENKVKANMEAMVVNRNMEDLIFDIQVPIEEYVENKEGSKKVKERKLF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K +M D+ ++ +++T V GF+G G P P++D E+ + Sbjct: 67 PSYVLVKMIMNDESWYLVRNTRGVTGFVGPGSKPVPLSDEEVITLGVC-----DNKEIFG 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EVGE V V GPF F G + + + EK ++ V V +FGR T VEL +NQV K Sbjct: 122 EYEVGETVKVISGPFNDFVGKIDSCNYEKKKIKVSVSMFGRDTLVELDFNQVIK 175 >gi|257460973|ref|ZP_05626073.1| transcription termination/antitermination factor NusG [Campylobacter gracilis RM3268] gi|257441636|gb|EEV16779.1| transcription termination/antitermination factor NusG [Campylobacter gracilis RM3268] Length = 176 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I L+ + E+ +P+E V+ V+ ++ ER Sbjct: 1 MANKWYAIQTYAGSEMAVKRAIEALKQDEALEAKIGEVLVPTEDVIEVKNTKQTIKERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + PS + + +IE I+ ++ + P Sbjct: 61 YPGYCFANLDLDTTLWHRIQMLPKVSRFIGEAKKPSALPEKDIEIILEKINNR-EAPKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + F+ GE V + DGPFA+FNGIV+ D ++ + V IFGR TP+E++Y+QVEKI+ Sbjct: 120 INFDEGETVRIIDGPFANFNGIVEEYDMIHGKLRLNVSIFGRSTPIEISYSQVEKII 176 >gi|150003400|ref|YP_001298144.1| transcription anti-termination protein [Bacteroides vulgatus ATCC 8482] gi|294777810|ref|ZP_06743254.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|319640312|ref|ZP_07995037.1| transcription antitermination protein nusG [Bacteroides sp. 3_1_40A] gi|149931824|gb|ABR38522.1| transcription anti-termination protein [Bacteroides vulgatus ATCC 8482] gi|294448264|gb|EFG16820.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|317388087|gb|EFV68941.1| transcription antitermination protein nusG [Bacteroides sp. 3_1_40A] Length = 180 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK Sbjct: 125 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 179 >gi|298206601|ref|YP_003714780.1| putative transcription antitermination protein [Croceibacter atlanticus HTCC2559] gi|83849231|gb|EAP87099.1| putative transcription antitermination protein [Croceibacter atlanticus HTCC2559] Length = 183 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 115/178 (64%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K + I +S GL+ V +I +P+E+V+ +R G+KVN ER +F Sbjct: 6 EKKWYVVRSVSGQENKIKDYIEREISHHGLEDFVDQILVPTEKVIQIRNGKKVNKERVYF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118 PGY++++A ++ ++ H IK VIGFLG G +P P+ SE+ ++ +V+ +V Sbjct: 66 PGYIMVQANLSGEIPHIIKGINGVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELSVAADN 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ + VGE + V DGPF FNG V+ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 VAIPYTVGETIKVIDGPFNGFNGTVEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183 >gi|218246573|ref|YP_002371944.1| transcription antitermination protein NusG [Cyanothece sp. PCC 8801] gi|257059613|ref|YP_003137501.1| transcription antitermination protein NusG [Cyanothece sp. PCC 8802] gi|218167051|gb|ACK65788.1| NusG antitermination factor [Cyanothece sp. PCC 8801] gi|256589779|gb|ACV00666.1| NusG antitermination factor [Cyanothece sp. PCC 8802] Length = 208 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 14/187 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRF 60 T RWY VQV S CEK+ ++ R+ + + ++ IP + VRK E + Sbjct: 23 TARWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPKTPTIKVRKDGSRQHGEEKV 82 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109 FPGYVL++ +M D + +K+TP VI F+G + P P++ EIE I Q Sbjct: 83 FPGYVLVRMIMDDDAWQVVKNTPHVINFVGAEQSRGTGRGRGHVRPVPLSPGEIERIFKQ 142 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + VQ PV + VG+++ V GPF F G V V E+ ++ + IFGR TPVEL Sbjct: 143 --SEVQEPVVKIDTMVGDKIMVLSGPFKDFEGEVVEVSPERGKLRALLSIFGRDTPVELE 200 Query: 170 YNQVEKI 176 +NQ+EK+ Sbjct: 201 FNQIEKL 207 >gi|222529521|ref|YP_002573403.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|312622249|ref|YP_004023862.1| nusg antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|222456368|gb|ACM60630.1| NusG antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|312202716|gb|ADQ46043.1| NusG antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 174 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V GPFA F G V +++E+ +V V + +FGR TPVE Y+QVE++ Sbjct: 122 EVGDNVKVVSGPFADFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174 >gi|254458743|ref|ZP_05072167.1| transcription termination/antitermination factor NusG [Campylobacterales bacterium GD 1] gi|207084509|gb|EDZ61797.1| transcription termination/antitermination factor NusG [Campylobacterales bacterium GD 1] Length = 175 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y E+ +I + GL ++E+ +P+E V+ V+ G+K +ER Sbjct: 1 MAHQWYSIQTY-GSERAVRIAILNMIEEMGLQDFISEVIVPTEDVIEVKDGKKKITERSL 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GYV + +V H I PKV GF+G P+P+++ +I I+++V P Sbjct: 60 YSGYVFANIDLNTEVQHLITALPKVSGFIGEANTPTPLSEHDINVILDRVNNRA-APKPK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V+F+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+ Sbjct: 119 VYFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175 >gi|312793745|ref|YP_004026668.1| nusg antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876856|ref|ZP_07736833.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796371|gb|EFR12723.1| NusG antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|312180885|gb|ADQ41055.1| NusG antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 174 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V GPF F G V ++ E+ +V V + +FGR TPVE Y+QVE++ Sbjct: 122 EVGDNVKVVSGPFTDFYGPVVEINRERKKVKVMLNLFGRETPVEFDYHQVERL 174 >gi|25027042|ref|NP_737096.1| transcription antitermination protein NusG [Corynebacterium efficiens YS-314] gi|259508475|ref|ZP_05751375.1| transcription antitermination protein NusG [Corynebacterium efficiens YS-314] gi|23492322|dbj|BAC17296.1| putative transcription antitermination protein NusG [Corynebacterium efficiens YS-314] gi|259163939|gb|EEW48493.1| transcription antitermination protein NusG [Corynebacterium efficiens YS-314] Length = 287 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 22/194 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R ++ + E+ +P E+V +R G++ +R+ PGY Sbjct: 93 WYIIQCYSGYENKVKANLDMRAQTLEVEEDIYEVVVPIEQVTEIRDGKRKLVKRKLLPGY 152 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------------- 108 VL++ M D+V+ ++DTP V F+G N + V ++ + Sbjct: 153 VLVRMEMNDRVWSVVRDTPGVTSFVGNEGNATAVKHRDVAKFLMPQESAVVAGEAAPTTA 212 Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + +V F+VGE V + G FAS + + ++D E ++ V IFGR Sbjct: 213 EGEQVVAMPTDSAAQQVTVDFQVGEAVTILTGAFASVSATISSIDVENQKLEALVSIFGR 272 Query: 163 VTPVELAYNQVEKI 176 TPV+L ++QVEKI Sbjct: 273 ETPVDLKFDQVEKI 286 >gi|227825215|ref|ZP_03990047.1| NusG antitermination factor [Acidaminococcus sp. D21] gi|226905714|gb|EEH91632.1| NusG antitermination factor [Acidaminococcus sp. D21] Length = 185 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY++ YS E K ++ ++ G++ ++ ++ +P + + + ++ R+ FPG Sbjct: 6 HWYVIHTYSGYENKVKLNLESKVHSLGMEDMIFQVLVPMQDELETKDDQQKVVSRKVFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP------ 117 YVLI+ ++ D+ ++ +++TP V GF+GTG P P++ E+ I+ + + Sbjct: 66 YVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSPREVARILGKQSTGKKEASVEAPI 125 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+ + V + F G V + +E+ +V V + +FGRVTPVE+ ++QVE I Sbjct: 126 RMKCPVELDQTVRIKAPGFNDMVGTVAEISDEQQKVKVMIEMFGRVTPVEVNFSQVEAI 184 >gi|325283114|ref|YP_004255655.1| NusG antitermination factor [Deinococcus proteolyticus MRP] gi|324314923|gb|ADY26038.1| NusG antitermination factor [Deinococcus proteolyticus MRP] Length = 189 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKG-RKVNSER 58 M+ WY V Y E + + + R + G+ + ++ PSE+ V +R G +K ER Sbjct: 1 MSIEWYAVHTYIGQEDRVQQHLLERARKLGMLGTKIFQVLQPSEQAVELRDGGKKETVER 60 Query: 59 RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 + FPGYV ++ + D + +++T V GF+GT P P++ E++ ++ V Sbjct: 61 KLFPGYVFVQMDIEDDDAPGELGESWEVVRNTNGVTGFVGTATYPVPLSPDEVQRLLASV 120 Query: 111 ----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V+ P V + G+ V V GPFA FNG+V V+ +++V V V IFGR TPV Sbjct: 121 GVGTVPKVEAPKVQVDLKPGDMVKVKSGPFADFNGVVSEVNAAQAKVKVLVSIFGRETPV 180 Query: 167 ELAYNQVEK 175 EL + QV K Sbjct: 181 ELDFAQVSK 189 >gi|284047641|ref|YP_003397980.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731] gi|283951862|gb|ADB46665.1| NusG antitermination factor [Acidaminococcus fermentans DSM 20731] Length = 191 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 12/186 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ YS E K ++ ++ G++ + ++ +P + V + ++ R+ FP Sbjct: 5 KHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA--------- 113 GYVLI+ ++ D+ ++ +++TP V GF+GTG P P++D E+E I+ Sbjct: 65 GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGK 124 Query: 114 -VQRPVSSVFFEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 V+ PV + VG + V + F G V +++E+ ++ V V +FGR TP+E+ + Sbjct: 125 AVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKF 184 Query: 171 NQVEKI 176 QVE I Sbjct: 185 TQVEAI 190 >gi|224023595|ref|ZP_03641961.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM 18228] gi|224016817|gb|EEF74829.1| hypothetical protein BACCOPRO_00302 [Bacteroides coprophilus DSM 18228] Length = 180 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+ VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKEAKVKEYLEAEMRHSDLGEYVSQVLIPTEKTYQVRNGKKIVKERTYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLVEAALVGEVAHQLRNITNVIGFLGGQDHPVPLRQSEVNRILGTVDELQEIGEDLN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK Sbjct: 125 IPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179 >gi|260905750|ref|ZP_05914072.1| transcription termination/antitermination factor [Brevibacterium linens BL2] Length = 302 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + +++ R L+ + E +P E VV ++ G++ R PGY Sbjct: 114 WYVIHSYAGYENRVKQNLENRAISLNLEEFIFESQVPMEDVVEIKNGQRKQVRRVRIPGY 173 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 VL++ +TD+ + ++ TP V GF+G +P+P++ E+ ++ + Q Sbjct: 174 VLVRMELTDESWGAVRHTPGVTGFVGNAYDPTPLSIDEVFTMLAPIFEERQAEAAAAEGV 233 Query: 116 --------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 P++ V +EVGE V V +G F ++ + E ++ V + IF R PVE Sbjct: 234 QAEQAAKSAPITEVEYEVGESVLVKEGSFEGHPATIQEIRPESQKLTVLLSIFERDVPVE 293 Query: 168 LAYNQVEKI 176 L+++QV K+ Sbjct: 294 LSFDQVSKL 302 >gi|225569799|ref|ZP_03778824.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM 15053] gi|225161269|gb|EEG73888.1| hypothetical protein CLOHYLEM_05893 [Clostridium hylemonae DSM 15053] Length = 171 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKATQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + + + V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIR------QENIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V G +A G+++ ++ K + + V +FGR TPVE+++ +V+K+ Sbjct: 117 DFEVGDTVQVIAGAWADTVGVIQALNIPKQSLTINVELFGRETPVEISFAEVKKM 171 >gi|154175492|ref|YP_001408646.1| transcription antitermination protein NusG [Campylobacter curvus 525.92] gi|112803934|gb|EAU01278.1| transcription termination/antitermination factor NusG [Campylobacter curvus 525.92] Length = 176 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E I + G++ + E+ +P+E V+ ++ G++ +ER Sbjct: 1 MAHKWYAIQTYAGSEMAVKRGIENLVKDHGIEEQLKEVIVPTEDVIEIKNGKQKINERTL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + P+P++D +I I+ +V+ P Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGESKKPTPLSDKDINTILEKVQKRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPV++ Y+QVEKI+ Sbjct: 120 IFFDEGESVRITEGPFANFTGIVEEYDMVHGKLRLNVSIFGRSTPVDILYSQVEKII 176 >gi|218438014|ref|YP_002376343.1| transcription antitermination protein NusG [Cyanothece sp. PCC 7424] gi|218170742|gb|ACK69475.1| NusG antitermination factor [Cyanothece sp. PCC 7424] Length = 213 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 10/182 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK E + FP Sbjct: 30 RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQVQIPQTPTVKIRKDGSRQHGEEKVFP 89 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113 GYVL++ +M D + +K+TP VI F+G + +A Sbjct: 90 GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSSSEVERIFRQAQ 149 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +NQ+ Sbjct: 150 GQEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFNQI 209 Query: 174 EK 175 EK Sbjct: 210 EK 211 >gi|312127420|ref|YP_003992294.1| nusg antitermination factor [Caldicellulosiruptor hydrothermalis 108] gi|311777439|gb|ADQ06925.1| NusG antitermination factor [Caldicellulosiruptor hydrothermalis 108] Length = 174 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLADRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEIFDI 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++ Sbjct: 122 EVGDNVKVVSGPFTDFYGPVVEINKERRKVKVMLNLFGRETPVEFDYHQVERL 174 >gi|295107783|emb|CBL21736.1| transcription antitermination protein nusG [Ruminococcus obeum A2-162] Length = 171 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 6/174 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV +R G +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + ++ V Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKAEDIQV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+ V V+ G + G++ ++ +K V + V +FGR TPVE+++ +++K Sbjct: 117 DFAEGDMVVVTGGAWKDTAGVITAINTQKQTVTINVELFGRETPVEISFAEIKK 170 >gi|261880900|ref|ZP_06007327.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bergensis DSM 17361] gi|270332408|gb|EFA43194.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bergensis DSM 17361] Length = 182 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 103/175 (58%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++V S E K E I + S L V+++ IP E+ V++R G++V ++ Sbjct: 6 KNWYVLRVVSGKEAKVKEYIEAEMKHSTQLADHVSQVLIPMEKHVAIRNGKRVEKDKTSM 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ ++A + V ++ P +GF+G +NPSPV S+I ++ E + S+ Sbjct: 66 PGYIFVEAELNGDVAAALRFMPNCLGFIGGLDNPSPVPQSQINRMLGAAEESDMDNEVSI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + E V V DGPF+ F GI++ V+ EK ++ V V IFGR TP+EL++ QVEK+ Sbjct: 126 PYVLDETVKVVDGPFSGFEGIIEEVNTEKRKLKVMVKIFGRKTPLELSFMQVEKV 180 >gi|75908765|ref|YP_323061.1| transcription antitermination protein NusG [Anabaena variabilis ATCC 29413] gi|75702490|gb|ABA22166.1| transcription antitermination protein nusG [Anabaena variabilis ATCC 29413] Length = 210 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + ++E + Sbjct: 25 EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ VM D + +++T VI F+G + + Sbjct: 85 FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 145 TTEQEPIVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204 Query: 172 QVEK 175 QVEK Sbjct: 205 QVEK 208 >gi|305664391|ref|YP_003860678.1| putative transcription antitermination protein [Maribacter sp. HTCC2170] gi|88708408|gb|EAR00644.1| putative transcription antitermination protein [Maribacter sp. HTCC2170] Length = 183 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I ++R G + ++ +P+E+V+ +R G+K+N ER +F Sbjct: 6 EKKWYVVRAVSGQENKIKGYIESEVTRLGFSDYLEDVLVPTEKVIQIRNGKKINKERVYF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118 PGY++IKA + ++ H I+ VIGFLG G +P P+ +E+ ++ +V+ AV Sbjct: 66 PGYIMIKANLGGEMIHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELAVNTDS 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 IAIPFVHGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183 >gi|189499294|ref|YP_001958764.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1] gi|189494735|gb|ACE03283.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1] Length = 193 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 104/174 (59%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY +++YS E+K E I + R L+ + ++ +P E+ V VR G+K + + FP Sbjct: 18 PRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLI+A++ + + I D P V+GFLG + P+P+ E+E I+ QR V Sbjct: 78 GYVLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAP 137 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ I Sbjct: 138 FRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191 >gi|254412797|ref|ZP_05026570.1| transcription termination/antitermination factor NusG [Microcoleus chthonoplastes PCC 7420] gi|196180532|gb|EDX75523.1| transcription termination/antitermination factor NusG [Microcoleus chthonoplastes PCC 7420] Length = 205 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 + RWY VQV S CEK+ ++ R+ + + + IP V +RK + +SE + Sbjct: 20 SARWYAVQVASGCEKRVKTNLEQRVQTLDVADRILRVQIPQTPTVKIRKDGSRQHSEEKV 79 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ VM D+ + +K+TP VI F+G + Sbjct: 80 FPGYVLVEMVMDDESWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPVPLSPGEVERIFKH 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q PV V VG+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 140 TEEQEPVIKVDMAVGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 199 Query: 172 QVEK 175 QVEK Sbjct: 200 QVEK 203 >gi|283798907|ref|ZP_06348060.1| transcription termination/antitermination factor NusG [Clostridium sp. M62/1] gi|291073370|gb|EFE10734.1| transcription termination/antitermination factor NusG [Clostridium sp. M62/1] gi|295092664|emb|CBK78771.1| transcription antitermination protein nusG [Clostridium cf. saccharolyticum K10] Length = 171 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + GL + E+++P + VV ++ G + ++ F Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPMQDVVEIKNGAQKQVAKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ ++ + V V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMANLGFKPAGVV------V 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E+G+ V V G + G++K+++E K + + V +FGR TPVEL + +V+K+ Sbjct: 117 DYEIGDAVVVISGAWKDTVGVIKSINENKQTLEITVEMFGRETPVELNFTEVKKM 171 >gi|17232791|ref|NP_489339.1| transcription antitermination protein NusG [Nostoc sp. PCC 7120] gi|17134438|dbj|BAB76998.1| transcription antitermination protein [Nostoc sp. PCC 7120] Length = 210 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + ++E + Sbjct: 25 EARWYAVQVASGCEKRVKTNLEQRIQTFDVAEKIVQVEIPHTPAVKIRKDGSRQHTEEKV 84 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ VM D + +++T VI F+G + + Sbjct: 85 FPGYVLVRMVMDDDTWQVVRNTSHVINFVGAEQKRGTGKGRGHVKPLPLSHSEVERIFKQ 144 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 145 TTEQEPVVKIDMASGDKIIVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 204 Query: 172 QVEK 175 QVEK Sbjct: 205 QVEK 208 >gi|260063562|ref|YP_003196642.1| putative transcription antitermination protein [Robiginitalea biformata HTCC2501] gi|88783006|gb|EAR14180.1| putative transcription antitermination protein [Robiginitalea biformata HTCC2501] Length = 183 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I + R G + E+ +P+E+VV +R G+K+N ER +F Sbjct: 6 EKKWYVVRAVSGQENKIKGYIESEVERHGFGDNLEEVLVPTEKVVQIRNGKKINKERVYF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV-QRPV 118 PGY+++KA +T ++ H I+ VIGFLG G +P P+ SE+ ++ +V+ Sbjct: 66 PGYIMVKANLTGEMIHIIRSITNVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAINTDA 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 VAIPFVLGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183 >gi|315639708|ref|ZP_07894847.1| transcription antitermination protein NusG [Enterococcus italicus DSM 15952] gi|315484485|gb|EFU74942.1| transcription antitermination protein NusG [Enterococcus italicus DSM 15952] Length = 214 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R + + + +P E V+ G++ + F Sbjct: 39 EKSWYVLHTYSGYENKVKTNIESRAQSMRMGDYIFRVVVPEEVEKEVKNGKEKEIVHKTF 98 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ EI I+ + + + Sbjct: 99 PGYVLVEMIMTDESWYVVRNTPGVTGFVGSHGAGSKPAPLLQEEINSILRSLGMSTRTVE 158 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V + +G F+ G V +DEE+ ++ V + +FGR T EL ++QV+ I Sbjct: 159 LKVAL--GQTVKIIEGAFSGLEGQVTEIDEERQKLKVNIDMFGRETSTELDFDQVDDI 214 >gi|310659520|ref|YP_003937241.1| transcription termination factor [Clostridium sticklandii DSM 519] gi|308826298|emb|CBH22336.1| transcription termination factor [Clostridium sticklandii] Length = 180 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 103/182 (56%), Gaps = 9/182 (4%) Query: 1 MTP------RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M+ +WY++ YS E K +I ++ G++ L+ ++ +P E VV + G++ Sbjct: 1 MSMSEQEQAKWYVIHTYSGHENKVKATIEKAVANRGMEDLIQDVAVPVEDVVENKNGKEK 60 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114 +R+ FPGYVLIK ++TD+ ++ +++T V GF+G P +T E+E N Sbjct: 61 IRQRKVFPGYVLIKMIVTDESWYVVRNTKGVTGFVGPNSKPVALTAEEVE---NMGVEKQ 117 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + V F +G+++ VS GPF F G ++ ++ +K V + +FGR TPVEL + QV+ Sbjct: 118 KSFDLVVDFSIGDKIQVSGGPFDGFAGTIEEINHDKKHAKVNISMFGRETPVELEFYQVK 177 Query: 175 KI 176 K+ Sbjct: 178 KV 179 >gi|302871673|ref|YP_003840309.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47] gi|302574532|gb|ADL42323.1| NusG antitermination factor [Caldicellulosiruptor obsidiansis OB47] Length = 174 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y+ E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYAGYENKVKANLEKIIENRNLSDRILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKAVM +++++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAVMDNEIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAM-----GIKEEVVEVFDI 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V + GPF F G V +++E+ +V V + +FGR TPVE Y+QVE++ Sbjct: 122 EVGDNVKIVSGPFTDFYGPVVEINKERKKVRVMLNLFGRETPVEFDYHQVERL 174 >gi|167772354|ref|ZP_02444407.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM 17241] gi|167665457|gb|EDS09587.1| hypothetical protein ANACOL_03731 [Anaerotruncus colihominis DSM 17241] Length = 174 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+V YS E K +I + L L E+ +P++ V ++ +K ER+ F Sbjct: 5 AMRWYVVHTYSGYENKVATNIEKAVENRKLHDLFGEVKVPTQTVTEIKDNKKREVERKIF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +MTD ++ +++ V GF+G G P P+T+ E++ + V++ V Sbjct: 65 PGYVLVKMIMTDDSWYVVRNIRGVTGFVGPGSKPVPLTEEEVQRL------GVEQRNIEV 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F VG+ V VS G F G V +D + + V V V + G+ PVEL +QVE Sbjct: 119 NFAVGDSVRVSGGYLEGFIGTVDEIDLQDALVRVTVSMMGKDVPVELELDQVE 171 >gi|291561991|emb|CBL40802.1| transcription antitermination protein nusG [butyrate-producing bacterium SS3/4] Length = 171 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K I + GL + E+++P E V+ ++ G + ER+ F Sbjct: 3 EAQWYVVHTYSGYENKVKVDIEKTIENRGLQDQILEVSVPLEEVIELKNGAQKQVERKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+++ E+ + + P V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLSEEEM------MSLGFKAPDVVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V+ G + G+++ V+E K + + V +FGR TPVEL++++++K+ Sbjct: 117 DFAVGDTVVVTAGAWKDTVGVIRTVNESKQSITINVEMFGRETPVELSFSEIKKM 171 >gi|254881310|ref|ZP_05254020.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA] gi|254834103|gb|EET14412.1| transcription anti-termination protein [Bacteroides sp. 4_3_47FAA] Length = 183 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 8 EKKWYVLRAVSGKESKVKEYLDADIKNSDLSEYVSQVLIPTEKVYQVRNGKKIVKERSYL 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++TP VIGFLG ENP P+ SE+ I+ V+ + + Sbjct: 68 PGYVLVEAALVGEVAHHLRNTPNVIGFLGGSENPVPLRQSEVNRILGTVDELQEGGEELN 127 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V+ GPF+ F+G+++ V+ EK ++ V V IFGR TP+EL + VEK Sbjct: 128 VPYTVGETVKVTVGPFSGFSGLIEEVNTEKRKLKVMVKIFGRKTPLELGFMDVEK 182 >gi|167043576|gb|ABZ08271.1| putative transcription termination factor nusG [uncultured marine microorganism HF4000_APKG2K17] Length = 272 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E + ++I +L G++HLV EI IPSE ++ ++G+K +++FPG Sbjct: 97 KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVLI +T +++H + + +V GF+G + P P+ + E+E I +QV Q+ + Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + VG++V +++G F +F+G + V+ E+ ++ V V IFGR TPVE+ + V+ +V Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHVV 271 >gi|34556887|ref|NP_906702.1| transcription antitermination protein NusG [Wolinella succinogenes DSM 1740] gi|34482602|emb|CAE09602.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Wolinella succinogenes] Length = 176 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY +Q YS E+ +I + + ++ + +I +P+E ++ V+ +K +ER Sbjct: 1 MSFDWYAIQTYSGSEQSVKRAIENLIRENKIEDRLEQIVVPTEDIIEVKNNKKKITERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV IK + +++H I+ P+V F+G + P+P+++++I I+ +V+ P Sbjct: 61 YPGYVFIKVSLDTELWHLIQSLPRVGRFIGEAKKPTPLSEADINTILEKVKNRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V FE GE V +++GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV Sbjct: 120 VSFEAGEVVRITEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176 >gi|163839736|ref|YP_001624141.1| transcription termination/antitermination factor [Renibacterium salmoninarum ATCC 33209] gi|162953212|gb|ABY22727.1| transcription termination/antitermination factor [Renibacterium salmoninarum ATCC 33209] Length = 264 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 13/185 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + EI +P E VV ++ ++ R PGY Sbjct: 80 WYVIHSYAGYENRVKANLETRAQSLNMEEHIFEIQVPMEEVVEIKNAQRKVVNRVRIPGY 139 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 140 VLVRMELTDASWGVVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEDEQAAESGKGSA 199 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + +V FE+GE V V +GPF + + + E + V V +F R TPV L+++ Sbjct: 200 TKAAQAPIAVDFEIGESVIVKEGPFETLPATISEIKPESQTLVVLVSLFERETPVTLSFS 259 Query: 172 QVEKI 176 QV KI Sbjct: 260 QVTKI 264 >gi|255971873|ref|ZP_05422459.1| transcription antitermination protein NusG [Enterococcus faecalis T1] gi|255974868|ref|ZP_05425454.1| transcription antitermination protein NusG [Enterococcus faecalis T2] gi|256616771|ref|ZP_05473617.1| transcription antitermination protein NusG [Enterococcus faecalis ATCC 4200] gi|256957955|ref|ZP_05562126.1| transcription antitermination protein NusG [Enterococcus faecalis DS5] gi|256961025|ref|ZP_05565196.1| transcription antitermination protein NusG [Enterococcus faecalis Merz96] gi|256963833|ref|ZP_05568004.1| transcription antitermination protein NusG [Enterococcus faecalis HIP11704] gi|257079893|ref|ZP_05574254.1| transcription antitermination protein NusG [Enterococcus faecalis JH1] gi|257081708|ref|ZP_05576069.1| transcription antitermination protein NusG [Enterococcus faecalis E1Sol] gi|257084305|ref|ZP_05578666.1| transcription antitermination protein NusG [Enterococcus faecalis Fly1] gi|257087696|ref|ZP_05582057.1| transcription antitermination protein NusG [Enterococcus faecalis D6] gi|257090914|ref|ZP_05585275.1| transcriptional antitermination protein nusG [Enterococcus faecalis CH188] gi|257416898|ref|ZP_05593892.1| transcription antitermination protein NusG [Enterococcus faecalis AR01/DG] gi|257420120|ref|ZP_05597114.1| transcription antitermination protein nusG [Enterococcus faecalis T11] gi|257421659|ref|ZP_05598649.1| transcription antitermination protein nusG [Enterococcus faecalis X98] gi|255962891|gb|EET95367.1| transcription antitermination protein NusG [Enterococcus faecalis T1] gi|255967740|gb|EET98362.1| transcription antitermination protein NusG [Enterococcus faecalis T2] gi|256596298|gb|EEU15474.1| transcription antitermination protein NusG [Enterococcus faecalis ATCC 4200] gi|256948451|gb|EEU65083.1| transcription antitermination protein NusG [Enterococcus faecalis DS5] gi|256951521|gb|EEU68153.1| transcription antitermination protein NusG [Enterococcus faecalis Merz96] gi|256954329|gb|EEU70961.1| transcription antitermination protein NusG [Enterococcus faecalis HIP11704] gi|256987923|gb|EEU75225.1| transcription antitermination protein NusG [Enterococcus faecalis JH1] gi|256989738|gb|EEU77040.1| transcription antitermination protein NusG [Enterococcus faecalis E1Sol] gi|256992335|gb|EEU79637.1| transcription antitermination protein NusG [Enterococcus faecalis Fly1] gi|256995726|gb|EEU83028.1| transcription antitermination protein NusG [Enterococcus faecalis D6] gi|256999726|gb|EEU86246.1| transcriptional antitermination protein nusG [Enterococcus faecalis CH188] gi|257158726|gb|EEU88686.1| transcription antitermination protein NusG [Enterococcus faecalis ARO1/DG] gi|257161948|gb|EEU91908.1| transcription antitermination protein nusG [Enterococcus faecalis T11] gi|257163483|gb|EEU93443.1| transcription antitermination protein nusG [Enterococcus faecalis X98] Length = 171 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 5/171 (2%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 YS E K +I R G+ + + +P E V+ G++ + FPGYVL++ Sbjct: 2 HTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIVHKTFPGYVLVE 61 Query: 69 AVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +MTD ++ +++TP V GF+G+ G P+P+ EI HI+ + + ++ V Sbjct: 62 MIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMSTRQSDLEVAL-- 119 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V + +G F+ G+V +DEEK ++ V + +FGR T EL + QV+ I Sbjct: 120 GDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI 170 >gi|154503736|ref|ZP_02040796.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149] gi|153795836|gb|EDN78256.1| hypothetical protein RUMGNA_01560 [Ruminococcus gnavus ATCC 29149] Length = 172 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 7/177 (3%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ +WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ Sbjct: 1 MSDAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVVELKNGVQKASQKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVLI +M D ++ +++T V GF+G G P P+ + E+ ++ +++ Sbjct: 61 MFPGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMANL------GIKQEDI 114 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+ V V G + G+++ ++E+K + + V +FGR TPVEL +++V K+ Sbjct: 115 VVDFEVGDTVTVLSGAWEGTVGMIQAINEQKQSLSINVELFGRETPVELNFSEVRKM 171 >gi|323486268|ref|ZP_08091595.1| transcription antitermination protein nusG [Clostridium symbiosum WAL-14163] gi|323693941|ref|ZP_08108127.1| transcription antitermination protein nusG [Clostridium symbiosum WAL-14673] gi|323400413|gb|EGA92784.1| transcription antitermination protein nusG [Clostridium symbiosum WAL-14163] gi|323501987|gb|EGB17863.1| transcription antitermination protein nusG [Clostridium symbiosum WAL-14673] Length = 171 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P + V+ ++ G + ++ F Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRKLQDQILEVSVPMQDVIELKNGAQKQVAKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T++E++ + + V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMDALGFR------EAGLVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V+ G + G++K+++E K + + V +FGR TPVEL + +V+K+ Sbjct: 117 EFEEGDTVVVTAGAWKDTVGVIKSINEGKQTLTINVEMFGRETPVELNFTEVKKM 171 >gi|291458135|ref|ZP_06597525.1| transcription termination/antitermination factor NusG [Oribacterium sp. oral taxon 078 str. F0262] gi|291419218|gb|EFE92937.1| transcription termination/antitermination factor NusG [Oribacterium sp. oral taxon 078 str. F0262] Length = 176 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 100/175 (57%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+ YS E K + + GL L+ E+++P + V+ ++ G + ++++ F Sbjct: 7 EARWYVAHTYSGYENKVKMDLEKTIENRGLQDLILEVSVPMQPVIEMKNGVEKKTDKKMF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D+ ++ +++T V GF+G G P P+++ EI + + + V Sbjct: 67 PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEIRILGYRESEIL------V 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F +G+ V V+ G + G++ ++E+K V + V +FGR TPVEL+Y +++K+ Sbjct: 121 DFALGDTVNVTSGAWKDTIGVITEINEQKRTVTINVEMFGRDTPVELSYGEIQKL 175 >gi|227510708|ref|ZP_03940757.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513723|ref|ZP_03943772.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC 11577] gi|227083042|gb|EEI18354.1| transcriptional antiterminator NusG [Lactobacillus buchneri ATCC 11577] gi|227189829|gb|EEI69896.1| transcriptional antiterminator NusG [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 183 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 6/176 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60 +WY++ YS E K ++ R G+ L+ + +P V K K + Sbjct: 6 EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRVVVPETEEHEVDKKGKDKVKMDKT 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + + Sbjct: 66 FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHE 125 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V VG+ V + DG F NG V +D EK R+ V + +FGR T EL +NQV Sbjct: 126 DLDVN--VGDSVKIVDGAFTGLNGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQV 179 >gi|169350901|ref|ZP_02867839.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552] gi|169292487|gb|EDS74620.1| hypothetical protein CLOSPI_01675 [Clostridium spiroforme DSM 1552] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 5/176 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K E++ R+ GL ++ +I IP ++ G+K+ + FPG Sbjct: 10 QWYVVNTYSGHENKVKENLEKRIESMGLQDVLFQIVIPEHVETEIKDGKKITKTKNMFPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 YVL++ +MTD+ ++ +++T V GF+ G G P P+ SE++ I+ ++ + + Sbjct: 70 YVLVEMIMTDEAWYVVRNTSGVTGFIGSSGGGAKPFPLQKSELDPILEKMGLSSTKV--E 127 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F+ G+ V V DGPF G V+++D EK V V G +T V++ Q++K+ Sbjct: 128 VDFQEGDEVDVIDGPFVGKRGKVESIDTEKEIAKVLVDFLGNLTQVDIELTQLKKV 183 >gi|315605093|ref|ZP_07880145.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315313200|gb|EFU61265.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 264 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+P WY++ YS E+K ++ R++ ++ + + +P E V+ R K Sbjct: 76 MSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGTAKKRVRHV 135 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGY ++ + Y +K+TP V GF+G NP P++ E+ ++ Sbjct: 136 RIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAV 195 Query: 120 S----------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +EVGE V V DGPF + + + + E ++ V V IF R TP+EL Sbjct: 196 KDQPAPVQAVQTQYEVGEIVTVIDGPFETMSATISEIMPETQKLKVLVTIFERETPLELG 255 Query: 170 YNQVEKI 176 ++QVEK+ Sbjct: 256 FDQVEKL 262 >gi|153813451|ref|ZP_01966119.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174] gi|149830472|gb|EDM85564.1| hypothetical protein RUMOBE_03871 [Ruminococcus obeum ATCC 29174] Length = 171 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 6/174 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV +R G +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLQEVVEMRNGAAKQVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + ++ V Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKNDDIQV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+ V V+ G + G++ + +K V + V +FGR TPVE+++ ++K Sbjct: 117 DFAEGDMVVVTAGAWKDTAGVITAISTQKQTVTINVELFGRETPVEISFADIKK 170 >gi|326693428|ref|ZP_08230433.1| transcription termination/antitermination factor NusG [Leuconostoc argentinum KCTC 3773] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 10/185 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R G+ + I +P + V + + G S F Sbjct: 22 EKSWFVVHTYSGYEHKVKANLESRTQTMGMTEQIFRILVPEQEVTTFQDGEAKTSVENDF 81 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112 PGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ Sbjct: 82 PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRM-G 140 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V R V + EVG+ V + GPFA G V +VD EK + V +FGR TP EL + Sbjct: 141 MVTREVVDLDVEVGQIVKIIAGPFAGMEGTVVSVDAEKQTLEATVEVFGRETPTELDFAD 200 Query: 173 VEKIV 177 V+ ++ Sbjct: 201 VDTVL 205 >gi|319953894|ref|YP_004165161.1| transcription antitermination protein nusg [Cellulophaga algicola DSM 14237] gi|319422554|gb|ADV49663.1| transcription antitermination protein nusG [Cellulophaga algicola DSM 14237] Length = 183 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K I ++R G + E+ +P+E+V+ VR G+KVN ER +FP Sbjct: 7 KKWYVVRAVSGQENKIKGYIESEVARLGFGDYLDEVLVPTEKVIQVRNGKKVNKERVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119 GY+++KA + +V H I+ VIGFLG G +P P+ +E+ ++ +V+ V Sbjct: 67 GYIMVKANLGGEVAHIIRSITNVIGFLGETKGGDPVPLRKTEVNRMLGKVDELTVTTENV 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE V V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 127 AIPFVMGETVKVIDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183 >gi|167749970|ref|ZP_02422097.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702] gi|167656991|gb|EDS01121.1| hypothetical protein EUBSIR_00938 [Eubacterium siraeum DSM 15702] gi|291530535|emb|CBK96120.1| transcription antitermination protein nusG [Eubacterium siraeum 70/3] gi|291557875|emb|CBL34992.1| transcription antitermination protein nusG [Eubacterium siraeum V10Sc8a] Length = 173 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS E K +I + + L HL+ E+ +P+E VV G+ E + F Sbjct: 3 EAKWYILHTYSGYENKVAGNIMKVVENNNLHHLIEEVMVPTETVVEEHDGKTKTYESKLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YV +K ++TD+ ++ ++T GF+G G P P+TD E++++ V V+ + Sbjct: 63 PSYVYVKMILTDESWYICRNTRGCTGFVGPGSKPIPLTDEEVKNL------GVTTKVAEI 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ + + G F G V ++DEE V V +FGR TP + + V+K+ Sbjct: 117 SFAVGDTIKIVSGSLEGFEGTVDSIDEENGTAQVTVSMFGRPTPATVEISAVQKV 171 >gi|212716698|ref|ZP_03324826.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM 16992] gi|212660402|gb|EEB20977.1| hypothetical protein BIFCAT_01632 [Bifidobacterium catenulatum DSM 16992] Length = 269 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS EK+ ++ R++ G++ + +I +P E V + K R PG Sbjct: 84 KWYVLHTYSGYEKRVKTNVESRVASFGMEDKIFQIEVPMEEVEKHTEKGKKVITRVRVPG 143 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV--------- 114 YVLI+ + + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 144 YVLIRMLPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVSMMAPMIASEALKKAGDKP 203 Query: 115 ---QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +N Sbjct: 204 AANKKRVLEVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFN 263 Query: 172 QVEKI 176 QVEK+ Sbjct: 264 QVEKL 268 >gi|116617397|ref|YP_817768.1| transcription antitermination protein nusG [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431256|ref|ZP_03913310.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096244|gb|ABJ61395.1| transcription antitermination protein nusG [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227353018|gb|EEJ43190.1| transcriptional antiterminator NusG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 192 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R G+ + I +P + V +++ G + F Sbjct: 6 EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKQTVENDF 65 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAA 113 PGYVL++ MTD+ ++ +++TP V GFLG+ S E ++ + Sbjct: 66 PGYVLVEMATPYEDNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMGM 125 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V R + VG+ V + GPF+ G+V ++D+EK + V +FGR TP EL ++ V Sbjct: 126 VTREQVDLDVAVGQTVKIISGPFSGMEGVVTSIDQEKQTLEATVAVFGRETPTELDFSDV 185 >gi|312892230|ref|ZP_07751727.1| transcription antitermination protein nusG [Mucilaginibacter paludis DSM 18603] gi|311295360|gb|EFQ72532.1| transcription antitermination protein nusG [Mucilaginibacter paludis DSM 18603] Length = 180 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S EKK + I ++R G+ HLV ++ IP E+ +R G+K+ ER FFPG Sbjct: 6 KWYVVRAISGKEKKVKQYIDAEINRLGISHLVPQVLIPMEKYYQMRDGKKIAKERNFFPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ +V+ ++ +V Sbjct: 66 YVLMEAALDGELEHIIKNINSVIGFLGDKAGNAIPLRQAEVNRILGKVDEMSEQGETMNV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + +GE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK Sbjct: 126 PYYIGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRRTPLELNYMQVEK 179 >gi|223936440|ref|ZP_03628352.1| NusG antitermination factor [bacterium Ellin514] gi|223894958|gb|EEF61407.1| NusG antitermination factor [bacterium Ellin514] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 70/182 (38%), Positives = 111/182 (60%), Gaps = 8/182 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +W+++ S E+K ESI R+ ++ + E+ +P E+VV VR +K S R+ Sbjct: 1 MRSQWFVIHTLSGQEQKVKESIEKRIKAEEMEEYIKEVLVPMEKVVEVRNQKKTVSTRKL 60 Query: 61 FPGYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 +PGYV + + D+ ++ IK+T VIGF+G GE P+P E+E I +Q+ + Sbjct: 61 WPGYVFVDMALLDENKRIIEKPWYFIKETQGVIGFVG-GEPPTPTPADEVESIKSQISDS 119 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +R V FEVGE V +++GPF +F+G+++ ++ E+ ++ V V IFGR TPVEL Y QV Sbjct: 120 EEREKPKVNFEVGETVKINNGPFLNFSGVIEEIEPERGKLKVTVNIFGRNTPVELEYWQV 179 Query: 174 EK 175 EK Sbjct: 180 EK 181 >gi|94984750|ref|YP_604114.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300] gi|94555031|gb|ABF44945.1| NusG antitermination factor [Deinococcus geothermalis DSM 11300] Length = 190 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58 M+ WY V Y E + + + R + G+ H + ++ P+E V +R+G +K R Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLLERAKKLGMLHTKIFQVLQPTEEAVELREGGKKETVRR 60 Query: 59 RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 + FPGYV ++ + D + ++ T V GF+GT P P++ E++ ++ V Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLASV 120 Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP Sbjct: 121 GVAAQPQEEAAPRVKVDLKPGDMVRVTAGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180 Query: 166 VELAYNQVEK 175 VEL + QV K Sbjct: 181 VELDFAQVSK 190 >gi|294101324|ref|YP_003553182.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261] gi|293616304|gb|ADE56458.1| NusG antitermination factor [Aminobacterium colombiense DSM 12261] Length = 181 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 98/175 (56%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWYIVQ Y+ E + ++ R++ G++ + + +P E V V+ G+ R+ + Sbjct: 7 ERRWYIVQTYAGYENRVKANLEQRIATMGMEEEIFSVLVPVEERVFVKDGKSKKVTRKLY 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL++ + D+ ++ ++ TP V GF+G G +P P+++ EI+ IM+++ +P + Sbjct: 67 PSYVLVEMKLNDQSWYVVRHTPGVTGFVGAGNHPIPLSEKEIKEIMSKIGKDHAKPKIEM 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V GPF G V + EK +V + +FGR T VE Y +++K+ Sbjct: 127 NLKPGDIVKVKSGPFEGQVGPVVEIVPEKGKVKFTITVFGRETVVETDYTELDKL 181 >gi|325126276|gb|ADY85606.1| Transcriptional antiterminator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 184 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E + +G++ + FP Sbjct: 7 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKREEVNEKVFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120 GYVL++ VMTD+ + +++TP V GF+G+ S + E + Q++ Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+ Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182 >gi|166031509|ref|ZP_02234338.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC 27755] gi|166028914|gb|EDR47671.1| hypothetical protein DORFOR_01207 [Dorea formicigenerans ATCC 27755] Length = 171 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 102/175 (58%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKSVENRHLEDQILEVRVPLQDVVELKNGVQKVSQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + Q + V V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIQQDNIV------V 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V G +A G+++ ++ +K V + V +FGR TPVE+++ +++++ Sbjct: 117 DFEVGDTVQVVAGAWADTVGVIQAMNAQKQSVTINVELFGRETPVEISFAEIKRV 171 >gi|146297208|ref|YP_001180979.1| NusG antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410784|gb|ABP67788.1| transcription antitermination protein nusG [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 175 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 4/172 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V Y E K ++ + L + +I IP+E V ++ G+K+ E++ FP Sbjct: 7 KWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLIKAVM + +++TI++ V GF+G P+P+TD EIE + + V Sbjct: 67 YVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEA----MGIKEEEVVEVFDI 122 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVG+ V + GPFA F G V ++++E+ +V V + +FGR TPVE Y+QVEK Sbjct: 123 EVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >gi|300865662|ref|ZP_07110433.1| transcription antitermination protein NusG [Oscillatoria sp. PCC 6506] gi|300336340|emb|CBN55583.1| transcription antitermination protein NusG [Oscillatoria sp. PCC 6506] Length = 211 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 RW+ VQV S CEK+ ++ R+ ++ + E+ IP + + + G + +S+ + Sbjct: 26 EARWFAVQVASGCEKRVKANLEQRIQTLDVNDRILEVEIPQTPAIKLGKDGARRHSDEKV 85 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ +M ++ + +K+TP VI F+G + + Sbjct: 86 FPGYVLVRMLMDEETWQIVKNTPNVINFVGAEQKRRYGRGRGHVKPLPLSNSEVERIFRQ 145 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 PV V G+ V V GPF F G V V E++++ V + IFGR TPVEL +N Sbjct: 146 TQEAEPVVKVSMAAGDHVVVLSGPFKDFEGDVIEVSPERNKLKVLLSIFGRDTPVELEFN 205 Query: 172 QVEK 175 QV+K Sbjct: 206 QVQK 209 >gi|223038971|ref|ZP_03609263.1| transcription termination/antitermination factor NusG [Campylobacter rectus RM3267] gi|255322049|ref|ZP_05363197.1| transcription termination/antitermination factor NusG [Campylobacter showae RM3277] gi|222879944|gb|EEF15033.1| transcription termination/antitermination factor NusG [Campylobacter rectus RM3267] gi|255300862|gb|EET80131.1| transcription termination/antitermination factor NusG [Campylobacter showae RM3277] Length = 176 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I + + ++ + EI +P+E V+ ++ G+K +ER Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVRDNHIEEQLKEIIVPTEDVIEIKNGKKKINERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY + ++H I+ PKV F+G + P+P+++ +I I+ +V+ P Sbjct: 61 YPGYAFAHLDLDTALWHKIQSLPKVGRFIGEAKKPTPLSEKDINLILEKVQKRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +FF+ GE V +++GPFA+F GIV+ D ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 120 IFFDNGENVRITEGPFANFTGIVEEYDMIHGKLRLNVSIFGRSTPVEILYSQVEKIV 176 >gi|186685895|ref|YP_001869091.1| transcription antitermination protein NusG [Nostoc punctiforme PCC 73102] gi|186468347|gb|ACC84148.1| NusG antitermination factor [Nostoc punctiforme PCC 73102] Length = 213 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + ++E + Sbjct: 28 EARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPQTPAVKIRKDGSRQHTEEKV 87 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ +M D + +++T VI F+G+ + H + Sbjct: 88 FPGYVLVRMMMDDDTWQVVRNTSHVINFVGSEQKRGSSKGRGHVHPIPLSSSEVERIFKQ 147 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + Q V + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 148 TSEQEAVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 207 Query: 172 QVEK 175 QVEK Sbjct: 208 QVEK 211 >gi|293400421|ref|ZP_06644567.1| transcription termination/antitermination factor NusG [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306821|gb|EFE48064.1| transcription termination/antitermination factor NusG [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 183 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F Sbjct: 7 KQWYVVNTYAGHENRVKENLERRVETMGLQDFLFRIVVAEEKEIEYKNGKEVEKTKNPFS 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ +MTD+ ++ +++TP V GF+ G G P PV + E+E I+ ++ + ++ Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEDEMEAILRRLGMSERKVQ- 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F VG+RV + G FA+ G V+ + E+ V +++FGR TP E++Y +EK+ Sbjct: 126 -IDFAVGDRVRILSGAFANSEGTVEELHEDSQTAIVLLILFGRETPTEISYGDLEKV 181 >gi|255282704|ref|ZP_05347259.1| transcription termination/antitermination factor NusG [Bryantella formatexigens DSM 14469] gi|255266725|gb|EET59930.1| transcription termination/antitermination factor NusG [Bryantella formatexigens DSM 14469] Length = 171 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L+ + E+ +P E VV V+ G +++ F Sbjct: 3 EANWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVSKTVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T++E+ + Q + + V Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIQAKNVM------V 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V V G + G+V++++E K V + V +FGR TPVE+ + +++K+ Sbjct: 117 DIEVGDTVSVIGGIWKDTVGVVQSINESKQIVTINVELFGRETPVEIGFAEIQKM 171 >gi|78188330|ref|YP_378668.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3] gi|78170529|gb|ABB27625.1| transcription antitermination protein nusG [Chlorobium chlorochromatii CaD3] Length = 191 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 105/174 (60%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY +++YS E+K E+I ++R GL + ++ +P ER V V+ G+K + + +P Sbjct: 16 PRWYALRIYSGHERKVKEAIEFEVARCGLSDKILQVHVPYERFVEVKNGKKRSLTKNAYP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLI++V+ + + I D P VIGFLG +NP P+ E+E I+ + R V V Sbjct: 76 GYVLIESVLDKQTRNLILDVPSVIGFLGVDDNPIPLRPDEVEKILEPEKDVEHRSVVDVP 135 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V DGPF+S G+V V E+ +V V + FGR TP EL + QV+ + Sbjct: 136 FNVGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRGTPTELDFTQVKPL 189 >gi|227522460|ref|ZP_03952509.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC 8290] gi|227090412|gb|EEI25724.1| transcriptional antiterminator NusG [Lactobacillus hilgardii ATCC 8290] Length = 183 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 6/176 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60 +WY++ YS E K ++ R G+ L+ I +P V K K + Sbjct: 6 EKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRIVVPETEEHEVDKKGKDKVKMDKT 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ +MTD+ ++ +++TP V GF+G+ G P+P+ E++ ++ ++ + + Sbjct: 66 FPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGMSSRHE 125 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V VG+ V + DG F G V +D EK R+ V + +FGR T EL +NQV Sbjct: 126 DLDVN--VGDSVKIVDGAFTGLKGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQV 179 >gi|88802462|ref|ZP_01117989.1| putative transcription antitermination protein [Polaribacter irgensii 23-P] gi|88781320|gb|EAR12498.1| putative transcription antitermination protein [Polaribacter irgensii 23-P] Length = 183 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 115/177 (64%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ E K I ++R GL V+++ +P+E+V+ ++ G+K+N E+ +FP Sbjct: 7 MKWYVVRAIGGQENKVKAYIETEIARLGLSDFVSQVIVPTEKVIQIKDGKKINKEKVYFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119 GY++++A ++ +V H IK VIGFLG G P P+ +E+ ++ +V+ ++Q Sbjct: 67 GYIMVEANLSGEVPHVIKGITGVIGFLGEVKGGAPVPMRKAEVNRMLGKVDELSIQDENV 126 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F++GE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 127 AIPFDIGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 183 >gi|184200230|ref|YP_001854437.1| transcription antitermination protein NusG [Kocuria rhizophila DC2201] gi|183580460|dbj|BAG28931.1| transcription antitermination protein NusG [Kocuria rhizophila DC2201] Length = 294 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ Y+ E + ++ R+ ++ + +I +P E VV ++ ++ R PGY Sbjct: 103 WFVIHTYAGYENRVKTNLETRIQSLNMEEDIFQIEVPMEEVVEIKNSQRKTVRRVRIPGY 162 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQR------- 116 VL++ +TD + ++ TP V GF+G NP+P+ E+ ++ ++ Sbjct: 163 VLVRMNLTDASWGAVRHTPGVTGFVGQDAYNPAPLRLDEVFDMLAPTFETPEKAKGLGET 222 Query: 117 ------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 +V FEVGE V V +GPF + + + E ++ V V IF R T Sbjct: 223 AGPGAGSQGGAAQQVTVDFEVGESVIVKEGPFETLPATISEIKVESQQLVVLVSIFERET 282 Query: 165 PVELAYNQVEKI 176 PV L +NQV KI Sbjct: 283 PVTLGFNQVTKI 294 >gi|167758528|ref|ZP_02430655.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704] gi|167663724|gb|EDS07854.1| hypothetical protein CLOSCI_00868 [Clostridium scindens ATCC 35704] Length = 171 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 100/175 (57%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGVQKATQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + + + V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIR------QENIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+ Sbjct: 117 DFQEGDTVQVIAGAWADTVGVIQSMNIQKQSLTINVELFGRETPVEIGFAEVKKM 171 >gi|153852603|ref|ZP_01994040.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814] gi|149754245|gb|EDM64176.1| hypothetical protein DORLON_00013 [Dorea longicatena DSM 13814] Length = 171 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E VV ++ G + S+++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVVEMKNGVQKVSQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+TD+E+ + Q R + Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDAEMAPLGIQ------REEVVM 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E G+ V V G +A G++++++ +K + + V +FGR TPVE+ + +V+K+ Sbjct: 117 DYEEGDTVQVIAGAWADTVGVIQSINMQKQSLTINVELFGRETPVEIGFAEVKKM 171 >gi|81299446|ref|YP_399654.1| transcription antitermination protein NusG [Synechococcus elongatus PCC 7942] gi|81168327|gb|ABB56667.1| transcription antitermination protein nusG [Synechococcus elongatus PCC 7942] Length = 205 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K + ++E + FP Sbjct: 22 RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 81 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111 GYVL++ ++ D + +++TP VI F+G + P P++ E+ I + + Sbjct: 82 GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQ 141 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 142 E--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 199 Query: 172 QVEK 175 QV+K Sbjct: 200 QVQK 203 >gi|255530756|ref|YP_003091128.1| transcription termination/antitermination factor NusG [Pedobacter heparinus DSM 2366] gi|255343740|gb|ACU03066.1| transcription termination/antitermination factor NusG [Pedobacter heparinus DSM 2366] Length = 180 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S EKK + I +SR G HLV ++ IP E+ ++ G+K+ ER F+PG Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKDGKKIAKERNFYPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVLI+A++ ++ H IK+ VIGFLG G NP P+ +E+ I+ +V+ Q+ +V Sbjct: 66 YVLIEAILDGELEHIIKNINSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK Sbjct: 126 AYYVGENVKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179 >gi|300779868|ref|ZP_07089724.1| transcription antitermination protein nusg [Corynebacterium genitalium ATCC 33030] gi|300533978|gb|EFK55037.1| transcription antitermination protein nusg [Corynebacterium genitalium ATCC 33030] Length = 342 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 24/197 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63 WYI+Q YS E K ++ R+ ++ + ++ +P E+V + G+K +R+ PG Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + +++TP V F+G N +PV ++ + Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASEA 265 Query: 109 --------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 + ++P + F+VGE V + G AS + + +D E ++ V IF Sbjct: 266 NTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSIF 325 Query: 161 GRVTPVELAYNQVEKIV 177 GR TPVEL +Q+E+I+ Sbjct: 326 GRETPVELTADQIERIM 342 >gi|260909715|ref|ZP_05916409.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260636140|gb|EEX54136.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 181 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I L + L V ++ IP E+ S+R G++V E+ Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAELKHNTLLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV ++A + V HT++ P V+GFLG +NPSPV S+I ++ E ++ Sbjct: 66 PGYVFVEANLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQSDINRMLGAAENTELENDINI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 126 PYSVDETVKVTDGPFSGFTGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|104774463|ref|YP_619443.1| transcription antitermination protein nusG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514567|ref|YP_813473.1| transcription antiterminator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423544|emb|CAI98456.1| Transcription antitermination protein nusG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093882|gb|ABJ59035.1| transcription antitermination protein nusG [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 184 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E + +G+K + FP Sbjct: 7 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120 GYVL++ VMTD+ + +++TP V GF+G+ S + E + Q++ Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V +++G F G + + ++K ++ + + +FG T EL ++QV+K+ Sbjct: 127 YDYEVGESVMITEGAFNGMVGKIAEIQDDKKKIFLTIDMFGHATTAELDFDQVKKM 182 >gi|325261295|ref|ZP_08128033.1| transcription termination/antitermination factor NusG [Clostridium sp. D5] gi|324032749|gb|EGB94026.1| transcription termination/antitermination factor NusG [Clostridium sp. D5] Length = 172 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + V+ ++ G + S+++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMQEVIELKNGVQKASQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+ + E+ + + + V Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEEEMNRLGIR------QENVIV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V G + G++++++E+K + + V +FGR TPVEL + +V K+ Sbjct: 117 EFAVGDAVTVLSGAWEGTVGVIQSLNEQKQSLSINVELFGRETPVELGFAEVRKM 171 >gi|56750899|ref|YP_171600.1| transcription antitermination protein NusG [Synechococcus elongatus PCC 6301] gi|56685858|dbj|BAD79080.1| transcription antitermination protein NusG [Synechococcus elongatus PCC 6301] Length = 209 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S CEK+ ++ R+ + + ++ IP +V ++K + ++E + FP Sbjct: 26 RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 85 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111 GYVL++ ++ D + +++TP VI F+G + P P++ E+ I + + Sbjct: 86 GYVLVRMILDDDAWQIVRNTPHVINFVGAEQKRPYGRGRGHVKPMPLSPGEVGRIFKRAQ 145 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q+P + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 146 E--QKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELEFN 203 Query: 172 QVEK 175 QV+K Sbjct: 204 QVQK 207 >gi|225017232|ref|ZP_03706424.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum DSM 5476] gi|224950007|gb|EEG31216.1| hypothetical protein CLOSTMETH_01158 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY+V YS E K ++I + L L+ E+ IP+E VV ++ + ER+ F Sbjct: 4 TAKWYVVHTYSGYENKVAQNIEKAVESRQLHDLIQEVKIPTETVVEIKDNKTREVERKLF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K ++TD ++ +++ V GF+G P P+T E+E + V+ V Sbjct: 64 PSYVLVKMIITDDTWYVVRNIRGVTGFVGPTSKPIPLTKKEVEAL------GVEDKKVEV 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +++G+ V + DG F GIV+ +D + + V V V +FGR TPVEL QV Sbjct: 118 DYQIGDSVKIVDGSLEGFIGIVQELDVDNNMVKVTVSMFGRETPVELELTQV 169 >gi|325662632|ref|ZP_08151232.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 4_1_37FAA] gi|331086382|ref|ZP_08335462.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471129|gb|EGC74355.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 4_1_37FAA] gi|330406148|gb|EGG85671.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 9_1_43BFAA] Length = 171 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + V+ ++ G + +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQEVIELKNGAEKAVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+T+ E+ + +Q V Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIQSESIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ + V G + G V+ V+ K + + V +FGR TPVEL++ +V+K+ Sbjct: 117 DFEEGDTITVVAGAWEGTVGAVQTVNPAKQSLTINVELFGRETPVELSFTEVKKM 171 >gi|218508075|ref|ZP_03505953.1| transcription antitermination protein NusG [Rhizobium etli Brasil 5] Length = 157 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 94/157 (59%), Positives = 123/157 (78%) Query: 20 ESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTI 79 E I + + GL+HL +I +P+E+VV VR+GRKV+SER+FFPGYVL++A +TD+ YH I Sbjct: 1 EDIENKARQKGLEHLFEKILVPTEKVVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLI 60 Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139 K+TPKV GFLG+ P P+ D E E I+ QV+ V+RP +S+ FE+GE+V VSDGPFASF Sbjct: 61 KNTPKVTGFLGSDNKPVPIPDYEAERILGQVQEGVERPKASITFEIGEQVRVSDGPFASF 120 Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 NG V++VDEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 121 NGTVQDVDEERSRLKVEVSIFGRATPVELEYAQVEKV 157 >gi|331091902|ref|ZP_08340734.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 2_1_46FAA] gi|330402801|gb|EGG82368.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 2_1_46FAA] Length = 171 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G + ++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGVQKAVSKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+TD E+ + Q + V Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPLGIQ------KEEIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V+ G + G+++ ++ +K + + V +FGR TPVE+++ +V+K+ Sbjct: 117 DFEEGDTVTVTAGAWEGTVGVIQAMNAQKQSLTINVELFGRETPVEISFKEVKKM 171 >gi|227505155|ref|ZP_03935204.1| transcription antitermination protein NusG [Corynebacterium striatum ATCC 6940] gi|227198268|gb|EEI78316.1| transcription antitermination protein NusG [Corynebacterium striatum ATCC 6940] Length = 281 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 21/194 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG Sbjct: 87 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQILENKDGKKKIVKRKLLPG 146 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + +++TP V F+G N +PV ++ + Sbjct: 147 YVLVRMELNDAAWSVVRETPGVTSFVGNEGNATPVKIRDVAKFLMPNEAAPEAKSSAGDQ 206 Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + + FEVGE V + GP AS + + +D E ++ V IFGR Sbjct: 207 DGEQVVAMPEKAAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 266 Query: 163 VTPVELAYNQVEKI 176 TPVEL+ ++E+I Sbjct: 267 ETPVELSPTEIERI 280 >gi|126659912|ref|ZP_01731036.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110] gi|126618776|gb|EAZ89521.1| transcription antitermination protein NusG [Cyanothece sp. CCY0110] Length = 206 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 14/186 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + +I IP V VRK + E + Sbjct: 21 AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 80 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109 FPGYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q Sbjct: 81 FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 140 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 E PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL Sbjct: 141 AEQP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 198 Query: 170 YNQVEK 175 +NQVEK Sbjct: 199 FNQVEK 204 >gi|257438468|ref|ZP_05614223.1| transcription termination/antitermination factor NusG [Faecalibacterium prausnitzii A2-165] gi|257199047|gb|EEU97331.1| transcription termination/antitermination factor NusG [Faecalibacterium prausnitzii A2-165] Length = 176 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 5/170 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+K VM D ++ +++T GF+G P P++ E+E + + +V F Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLTVDFN 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174 >gi|226355465|ref|YP_002785205.1| transcription antitermination protein [Deinococcus deserti VCD115] gi|226317455|gb|ACO45451.1| putative transcription antitermination protein nusG [Deinococcus deserti VCD115] Length = 190 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 15/190 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58 M+ WY V Y E + + + R ++ G+ + ++ P+E V +R G +K +R Sbjct: 1 MSIEWYAVHTYVGQEDRVEQHLMERATKLGMRGTKIFQVLQPTEEAVELRDGGKKETVQR 60 Query: 59 RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 + FPGYV ++ + D + ++ T V GF+GT P P++ E++ ++ V Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSTQEVDRLLASV 120 Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + P + + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP Sbjct: 121 GVATQAPVEEAPRVKIDLKAGDMVRVTSGPFADFSGVVSEVNLPQAKVKVLVSIFGRETP 180 Query: 166 VELAYNQVEK 175 VEL ++QV K Sbjct: 181 VELDFSQVSK 190 >gi|226198300|ref|ZP_03793871.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei Pakistan 9] gi|225929820|gb|EEH25836.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei Pakistan 9] Length = 164 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74 EK ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD+ Sbjct: 2 EKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDE 61 Query: 75 VYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133 +H +K+T KV GF+G PSP++ E+E IM+Q++ V++P FEVGE V V + Sbjct: 62 TWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKE 121 Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GPF FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 122 GPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 164 >gi|170077651|ref|YP_001734289.1| transcription antitermination protein NusG [Synechococcus sp. PCC 7002] gi|169885320|gb|ACA99033.1| transcription termination/antitermination factor NusG [Synechococcus sp. PCC 7002] Length = 200 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61 PRWY VQV S CE++ ++ R+ + + ++ IP V +RK E + F Sbjct: 16 PRWYAVQVASGCEQRVKANLEQRIHTLDVADRIFQVQIPQTPTVKIRKDGSRQHGEEKVF 75 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEA 112 PGYVLI+ + D+ + IK+TP VI F+G + S +A Sbjct: 76 PGYVLIQMTLDDEAWQVIKNTPHVINFVGAEQKRSYGRGRGHVKPVPLSKSEVERIFKQA 135 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V P V +G+++ V GPF F G + V E+S++ + IFGR TPVEL + Q Sbjct: 136 QVVEPTVKVDMAIGDKILVLSGPFKDFEGEIIEVSPERSKLKALLSIFGRDTPVELEFTQ 195 Query: 173 VEK 175 VEK Sbjct: 196 VEK 198 >gi|119356075|ref|YP_910719.1| transcription antitermination protein nusG [Chlorobium phaeobacteroides DSM 266] gi|119353424|gb|ABL64295.1| transcription antitermination protein nusG [Chlorobium phaeobacteroides DSM 266] Length = 191 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 103/174 (59%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY +++YS E+K E I ++R GL + +I +P ER V V+ G+K + + FP Sbjct: 16 PRWYALRIYSGHERKVKEGIEAEVARCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V Sbjct: 76 GYVLIEAVLDKQTRNVILDMPSVMGFLGVDDVPTPLRPEEVEKILVTENTVEHRAVIEAP 135 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F +G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ + Sbjct: 136 FRIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189 >gi|225573375|ref|ZP_03782130.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM 10507] gi|225039288|gb|EEG49534.1| hypothetical protein RUMHYD_01567 [Blautia hydrogenotrophica DSM 10507] Length = 172 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E VV +R G + + +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPMEDVVEMRNGTQKSVQKKLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + Q P V Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMRPLGIQ------EPSIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE G+ V V+ G + GI+++++ +K + V +FGR TPVE+++ +++K Sbjct: 117 DFEEGDEVVVTGGAWKDTVGIIQSLNIQKQVATINVELFGRETPVEISFLEIKK 170 >gi|307720234|ref|YP_003891374.1| transcription antitermination protein nusG [Sulfurimonas autotrophica DSM 16294] gi|306978327|gb|ADN08362.1| transcription antitermination protein nusG [Sulfurimonas autotrophica DSM 16294] Length = 175 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y ++ ++I + GL +T++ +P+E V+ V+ G+K SER Sbjct: 1 MAHQWYSIQTY-GSDRTVRDAIFNMIEEHGLQDYITDVIVPTEDVIEVKDGKKKVSERSL 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GYV + + ++ H I+ PKV GF+G G P+P+++ +I I+++V P Sbjct: 60 YSGYVFARIDLNTEIQHMIQSIPKVSGFIGEGNVPTPLSEHDINVILDRVNNRA-APKPK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VFF+ GE V + DGPFA+F V D E + + V IFGR TPV+++Y QVEKI+ Sbjct: 119 VFFDNGETVRIIDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKII 175 >gi|172056126|ref|YP_001812586.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15] gi|171988647|gb|ACB59569.1| NusG antitermination factor [Exiguobacterium sibiricum 255-15] Length = 183 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-----SERVVSVRKGRKVN 55 M +W++VQ YS E ++ R+ +D + + +P E + + Sbjct: 1 MDKQWFVVQTYSGFENNVKANLERRIESMNMDEKIFRVLVPIETVQEEVTNKKGETKIKE 60 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEA 112 E + FPGYVL++ VMTD ++ +++TP V GF +G G P+P+ E E+I+ + Sbjct: 61 REIKIFPGYVLVEMVMTDDSWYVVRNTPNVTGFLGSVGGGSKPTPLLPEEAENILGSMGL 120 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + S F +G+ V + +G FA+ G ++ ++ E ++ V V +FGR T VEL ++Q Sbjct: 121 VDMK--SRYDFTMGQIVRIKEGVFANLEGTIEELETEAEKMKVSVDMFGRETKVELDFSQ 178 Query: 173 VEKI 176 VEKI Sbjct: 179 VEKI 182 >gi|329767076|ref|ZP_08258604.1| transcription termination/antitermination factor NusG [Gemella haemolysans M341] gi|328837801|gb|EGF87426.1| transcription termination/antitermination factor NusG [Gemella haemolysans M341] Length = 181 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 + WY++ YS E K ++I R+ G++ + I +P E+ + +K R+ Sbjct: 6 SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ VMTD + +++TP V GF+G+ S + E I ++ V Sbjct: 66 FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSNVVD 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ V V GPF G V N+D + V + I GR T VEL +EK Sbjct: 126 IDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIEIMGRETKVELELYNIEK 180 >gi|301168471|emb|CBW28061.1| putative transcription antitermination protein [Bacteriovorax marinus SJ] Length = 211 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 2/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+I + + E K ++ R+ +EI +P E V S GRK +++ FPG Sbjct: 39 KWFIAKTLTGQEGKVQRALRERIVNYKQTEFFSEIMVPEETVTSHANGRKRTIKKKLFPG 98 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YVLIK +M D +H +KDT K+ GF+G + P+P++D E ++ Q ++ ++V Sbjct: 99 YVLIKMIMNDNTWHLVKDTDKITGFVGGTSDKPAPISDEEAAYMTGQQGEGFKKSKTTVD 158 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE V V +GPFASF G V+ + EK ++ V V IFGR TPVEL + Q+EK Sbjct: 159 FAEGETVKVIEGPFASFVGTVEAI-SEKGKIRVNVSIFGRPTPVELDFTQIEK 210 >gi|83815555|ref|YP_445881.1| transcription termination/antitermination factor NusG [Salinibacter ruber DSM 13855] gi|294507791|ref|YP_003571849.1| transcription antitermination protein NusG [Salinibacter ruber M8] gi|83756949|gb|ABC45062.1| transcription termination/antitermination factor NusG [Salinibacter ruber DSM 13855] gi|294344119|emb|CBH24897.1| transcription antitermination protein NusG [Salinibacter ruber M8] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 3/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++ +SN EKK + + R GL+ V EI IP+E V ++ G K E+ FFPGY Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 +L+ +T + +D P VIGF GTG+ P+ + + EI+ I+ +++ A + + Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F+VG+ V V DGPF SFNGIV++V ++ +V V V IFGR TPVEL Y QVE Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182 >gi|307152580|ref|YP_003887964.1| NusG antitermination factor [Cyanothece sp. PCC 7822] gi|306982808|gb|ADN14689.1| NusG antitermination factor [Cyanothece sp. PCC 7822] Length = 210 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62 RWY VQV S CEK+ ++ R+ + + +I IP V +RK E + FP Sbjct: 27 RWYAVQVASGCEKRVKTNLEQRIHTLDVADRILQIQIPQTPTVKIRKDGSRQHGEEKVFP 86 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113 GYVL++ +M D + +K+TP VI F+G + A Sbjct: 87 GYVLVQMIMDDDAWQVVKNTPNVINFVGAEQKRRYGRGRGHVKPMPLSSSEVERIFKVAQ 146 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 Q PV V EVG+++ V GPF F G V V E+S++ + IFGR TPVEL +NQ+ Sbjct: 147 GQEPVVKVDLEVGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRETPVELEFNQI 206 Query: 174 EK 175 EK Sbjct: 207 EK 208 >gi|197303970|ref|ZP_03169002.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC 29176] gi|197296938|gb|EDY31506.1| hypothetical protein RUMLAC_02707 [Ruminococcus lactaris ATCC 29176] Length = 172 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEEVTELRNGVEKAVQRKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+ +SE+E++ + + + Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENL------GINKEDVIM 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+ Sbjct: 117 DLAVGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171 >gi|172035143|ref|YP_001801644.1| transcription antitermination protein NusG [Cyanothece sp. ATCC 51142] gi|171696597|gb|ACB49578.1| transcription antitermination protein [Cyanothece sp. ATCC 51142] Length = 214 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 14/186 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + +I IP V VRK + E + Sbjct: 29 AARWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKV 88 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQ 109 FPGYVL+K +M D + +K+TP VI F+G+ + P P++ SE+E I Q Sbjct: 89 FPGYVLVKMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRGRGHVKPLPLSPSEVERIFRQ 148 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 E PV + E+G+++ V GPF F G V V E++++ + IFGR TPVEL Sbjct: 149 AEQP--EPVVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELE 206 Query: 170 YNQVEK 175 +NQVEK Sbjct: 207 FNQVEK 212 >gi|189460672|ref|ZP_03009457.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136] gi|189432631|gb|EDV01616.1| hypothetical protein BACCOP_01319 [Bacteroides coprocola DSM 17136] Length = 180 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + S L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKESKVKEYLEAEMRNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + +V H +++ VIGFLG E+P P+ SE+ I+ V+ + ++ Sbjct: 65 PGYVLVEAALVGEVAHHLRNITNVIGFLGGQEHPVPLRQSEVNRILGTVDELQEVSEDTN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V VS GPF+ F+GI++ V EK ++ V V IFGR TP+EL + VEK Sbjct: 125 IPYTVGETVKVSVGPFSGFSGIIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179 >gi|226322715|ref|ZP_03798233.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758] gi|225208876|gb|EEG91230.1| hypothetical protein COPCOM_00487 [Coprococcus comes ATCC 27758] Length = 171 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P + VV ++ G + S+++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDEILEVRVPMQEVVELKNGVQKASQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+TD E+ + Q + V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMAPLGIQ------KEDIVV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V+ G + G+++ ++ K + + V +FGR TPVE+++ +V+K+ Sbjct: 117 DFEEGDTVTVTGGAWEGTVGMIQTINMAKQSLTINVDLFGRETPVEISFAEVKKM 171 >gi|153816492|ref|ZP_01969160.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756] gi|317500772|ref|ZP_07958989.1| transcription antitermination protein nusG [Lachnospiraceae bacterium 8_1_57FAA] gi|331089751|ref|ZP_08338645.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 3_1_46FAA] gi|145846188|gb|EDK23106.1| hypothetical protein RUMTOR_02745 [Ruminococcus torques ATCC 27756] gi|316897865|gb|EFV19919.1| transcription antitermination protein nusG [Lachnospiraceae bacterium 8_1_57FAA] gi|330403634|gb|EGG83189.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 3_1_46FAA] Length = 172 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E +R G + +R+ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKAIENRHLEDQILEVRVPMEEATELRNGVQKAVQRKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I VM D ++ +++T V GF+G G P P+ + E+E++ Q R V Sbjct: 63 PGYVMIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLEEHEMENLGIQ------RDNVIV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V G + G V++++E+K + + V +FGR TPVEL++++V+K+ Sbjct: 117 NFGVGDMVVVLSGAWEGTVGTVQSMNEQKKSLSINVELFGRDTPVELSFSEVKKM 171 >gi|166366402|ref|YP_001658675.1| transcription antitermination protein NusG [Microcystis aeruginosa NIES-843] gi|166088775|dbj|BAG03483.1| transcription antitermination protein [Microcystis aeruginosa NIES-843] Length = 205 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61 PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK E + F Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQAATVKVRKDGSRQHGEEKVF 80 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEA 112 PGYVLIK +M D + +K+TP VI F+G + + +A Sbjct: 81 PGYVLIKMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +NQ Sbjct: 141 QIQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEFNQ 200 Query: 173 VEK 175 VEK Sbjct: 201 VEK 203 >gi|295100380|emb|CBK97925.1| transcription antitermination protein nusG [Faecalibacterium prausnitzii L2-6] Length = 176 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 5/170 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K + + L L+ +I +P+E V ++ G++ E + FPGY Sbjct: 10 WYVVHTYSGYENKVATDLQTMVENRRLQDLICDIKVPTEMVPEIKDGKERMVEHKLFPGY 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+K VM D ++ +++T GF+G P P+T E+E + + +V F Sbjct: 70 VLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLTVDFN 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE Sbjct: 125 VGDTVQITAGPLEGFMGLVEGIDTESFKVKLKVNMFGRETPAEVDIAQVE 174 >gi|182412062|ref|YP_001817128.1| NusG antitermination factor [Opitutus terrae PB90-1] gi|177839276|gb|ACB73528.1| NusG antitermination factor [Opitutus terrae PB90-1] Length = 192 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 8/179 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ + S E K I LD + E+ +P+E V V+ G+K R+ +PG Sbjct: 12 QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71 Query: 64 YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 YV I+ + +K ++ +K+ VIGF+G G+ P+ + SEI+ I ++EAA + Sbjct: 72 YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANGK 130 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V V + VGE V ++DG FAS G + +D E+ ++ V V IFGR TPVEL Y QV++ Sbjct: 131 EVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189 >gi|189345740|ref|YP_001942269.1| NusG antitermination factor [Chlorobium limicola DSM 245] gi|189339887|gb|ACD89290.1| NusG antitermination factor [Chlorobium limicola DSM 245] Length = 191 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 106/174 (60%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY +++YS E+K E I + R GL+ + ++ +P ER V V+ G+K + + FP Sbjct: 16 PRWYALRIYSGHERKVKEGIDAEVLRCGLEDKILQVYVPYERFVEVKNGKKRSLTKNAFP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V Sbjct: 76 GYVLIEAVLDKQTRNLILDIPSVMGFLGVDDNPTPLRPEEVEKILVPDNAVEHRSVIEAP 135 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V V DGPF+S G+V +V E+ +V V + FGR TP EL ++QV+ + Sbjct: 136 FRVGDSVKVVDGPFSSLTGVVHDVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189 >gi|225026865|ref|ZP_03716057.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353] gi|224955872|gb|EEG37081.1| hypothetical protein EUBHAL_01119 [Eubacterium hallii DSM 3353] Length = 174 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 3/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L + E+ +P + VV ++ G K N ++ F Sbjct: 3 ELNWYVVHTYSGYENKVKANIEKTIENRKLQDQIFEVRVPLQDVVEMKGGVKKNVSKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G +P P++++E+ ++ ++ + + Sbjct: 63 PGYVLVNMVMNDDTWYVVRNTRGVTGFVGPGSDPVPLSEAEMRNLGIVAQSDNE---VEI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+G+ V V+ G + V ++ K V +EV +FGR T VE+ + V+K+ Sbjct: 120 DIEIGDLVEVTSGAWEGRVSTVTAINMNKQTVTIEVDMFGRETSVEIGFLDVKKL 174 >gi|170017874|ref|YP_001728793.1| transcription termination/antitermination factor NusG [Leuconostoc citreum KM20] gi|169804731|gb|ACA83349.1| Transcription termination/antitermination factor NusG [Leuconostoc citreum KM20] Length = 211 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 8/184 (4%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R G+ + I +P + V +++ G S F Sbjct: 25 EKSWFVVHTYSGYEHKVKANLESRTQTMGMSQQIFRILVPEQEVTTIQDGEAKTSVENDF 84 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAA 113 PGYVL++ MTD+ ++ +++TP V GFLG+ S E ++ + Sbjct: 85 PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVDLLMKRMGM 144 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V R V + EVG+ V + GPF+ G V +D EK + V +FGR TP EL + V Sbjct: 145 VTREVVDLDVEVGQVVKIIAGPFSGMEGTVTAIDSEKQTLEATVEVFGRETPTELDFADV 204 Query: 174 EKIV 177 + ++ Sbjct: 205 DTVL 208 >gi|21672991|ref|NP_661056.1| transcription antitermination protein NusG [Chlorobium tepidum TLS] gi|21646053|gb|AAM71398.1| transcription antitermination protein NusG [Chlorobium tepidum TLS] Length = 191 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 104/173 (60%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY +++YS E+K ESI + R GL + ++ IP ER V V+ G+K + + FPG Sbjct: 17 HWYALRIYSGHERKVKESIEMEVERCGLSESIKQVYIPYERFVEVKNGKKRSLTKNAFPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI+AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F Sbjct: 77 YVLIEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPGGAIEHRAVVEAPF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ + Sbjct: 137 KVGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKPV 189 >gi|159028397|emb|CAO89839.1| nusG [Microcystis aeruginosa PCC 7806] Length = 205 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 10/183 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFF 61 PRWY VQV S CEK+ ++ R+ + + ++ IP V VRK E + F Sbjct: 21 PRWYAVQVASGCEKRVKANLEQRIHTLDVADRILQVQIPQSATVKVRKDGSRQHGEEKVF 80 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------NQVEA 112 PGYVLI+ +M D + +K+TP VI F+G + + +A Sbjct: 81 PGYVLIRMIMDDDAWQVVKNTPHVINFVGAEQKRHYGRGRGHVTPLPLSMSEVDRIFKQA 140 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 +Q PV + EVG+++ V GPF F G V V E+ ++ + IFGR TPVEL +NQ Sbjct: 141 EIQEPVVKINMEVGDQILVLSGPFKDFEGEVIEVSPERGKLKALLSIFGRDTPVELEFNQ 200 Query: 173 VEK 175 VEK Sbjct: 201 VEK 203 >gi|210613431|ref|ZP_03289714.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787] gi|210151174|gb|EEA82182.1| hypothetical protein CLONEX_01921 [Clostridium nexile DSM 1787] Length = 176 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P VV ++ G + ++++ F Sbjct: 8 EAKWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMLEVVEMKNGTQKAAQKKMF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+T++EI+ + V Sbjct: 68 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEIDALGIM------DADIVV 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVGE V V+ G + G+++ V+ +K + + V +FGR TPVE+++ +V+K+ Sbjct: 122 DFEVGEVVKVTKGAWKDTIGVIQEVNAQKQSLVINVELFGRETPVEISFAEVKKM 176 >gi|225012649|ref|ZP_03703084.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A] gi|225003182|gb|EEG41157.1| NusG antitermination factor [Flavobacteria bacterium MS024-2A] Length = 184 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K + I +SR G DHLV +I +P+E+V+ +R G+K+N ER +FP Sbjct: 8 KKWYVVRAVSGQEAKIKDYIMSEISRFGYDHLVEDILVPTEKVIQIRNGKKINKERVYFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV-QRPVS 119 GY+++KA +T ++ H IK VIGFLG G P P+ SE+ ++ +V+ Sbjct: 68 GYIMVKANLTGELPHIIKSVTNVIGFLGETKGGEPVPLRVSEVNRMLGKVDELALATEHV 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F GE V V DGPF F G ++NV+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 128 SIPFTEGENVKVIDGPFNGFTGAIENVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 184 >gi|149278895|ref|ZP_01885030.1| putative transcription antitermination protein [Pedobacter sp. BAL39] gi|149230514|gb|EDM35898.1| putative transcription antitermination protein [Pedobacter sp. BAL39] Length = 180 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S EKK + I +SR G HLV ++ IP E+ +++G+K+ ER F+PG Sbjct: 6 KWYVVRAVSGKEKKVKQYIDSEISRLGFSHLVPQVLIPMEKYYQMKEGKKIAKERNFYPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVLI+A + ++ H IK+ VIGFLG G NP P+ +E+ I+ +V+ Q+ ++ Sbjct: 66 YVLIEANLDGELEHIIKNVNSVIGFLGDKGGNPVPMRQAEVNRILGKVDEMSQQGETMNI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE + V DGPF F G+++ V+EEK ++ V V IFGR TP+EL Y QVEK Sbjct: 126 AYYVGENIKVMDGPFNGFTGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179 >gi|291549807|emb|CBL26069.1| transcription antitermination protein nusG [Ruminococcus torques L2-14] Length = 172 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E V +R G + +R+ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIDKTIETRHLEDQILEVRVPLEEVPEIRNGVEKVVQRKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+I +M D ++ +++T V GF+G G P P+ +SE+E++ + + + + Sbjct: 63 PGYVMIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLDESEMENLGIKQDEVI------L 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+G+ V V G + G V+ ++E+K + + V +FGR TPVEL +++V+K+ Sbjct: 117 DLEIGDVVTVLSGAWEGTVGAVQTINEQKKSLTINVELFGRETPVELGFSEVKKM 171 >gi|325104986|ref|YP_004274640.1| transcription antitermination protein nusG [Pedobacter saltans DSM 12145] gi|324973834|gb|ADY52818.1| transcription antitermination protein nusG [Pedobacter saltans DSM 12145] Length = 180 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 111/174 (63%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S EKK + I +SR L+HLV ++ IP E+ +R G+K+ ER ++PG Sbjct: 6 KWYVVRAVSGKEKKVKQYIDAEISRLELNHLVPQVLIPMEKYYQMRDGKKIAKERNYYPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVL++A + ++ IK+ VIGFLG N P+ +E+ I+ +V+ ++ + ++ Sbjct: 66 YVLVEAALNAELELIIKNLNSVIGFLGDKDGNAVPLRPAEVNRILGKVDEMTEQGEMMNI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V DGPF F+G+++ V+EEK ++ V V IFGR TP+EL Y QVEK Sbjct: 126 PYYVGENVKVMDGPFNGFSGVIEEVNEEKKKLKVMVKIFGRKTPLELNYMQVEK 179 >gi|86606432|ref|YP_475195.1| transcription antitermination protein NusG [Synechococcus sp. JA-3-3Ab] gi|86554974|gb|ABC99932.1| transcription termination/antitermination factor NusG [Synechococcus sp. JA-3-3Ab] Length = 223 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 14/186 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVE 111 GYVL++ + D + +K TP VI F+GT E P P++ SE++ I + VE Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V+ + G+R+ V GPF F G V +V E+ ++ + IFGR TPVEL + Sbjct: 160 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217 Query: 172 QVEKIV 177 QV K V Sbjct: 218 QVRKEV 223 >gi|241889605|ref|ZP_04776903.1| transcription termination/antitermination factor NusG [Gemella haemolysans ATCC 10379] gi|241863227|gb|EER67611.1| transcription termination/antitermination factor NusG [Gemella haemolysans ATCC 10379] Length = 181 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 + WY++ YS E K ++I R+ G++ + I +P E+ + +K R+ Sbjct: 6 SKEWYVIHTYSGYENKVKDNIEKRVESLGMEDKIFRIVVPEEKETILTPTGKKKEVNRKT 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGYVL++ VMTD + +++TP V GF+G+ S + E I ++ V Sbjct: 66 FPGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSNVVD 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ V V GPF G V N+D + V + + GR T VEL +EK Sbjct: 126 IDIEVGDYVRVISGPFVDMEGKVVNLDLHNYKADVMIELMGRETKVELELYNIEK 180 >gi|227549794|ref|ZP_03979843.1| transcription antitermination protein NusG [Corynebacterium lipophiloflavum DSM 44291] gi|227078049|gb|EEI16012.1| transcription antitermination protein NusG [Corynebacterium lipophiloflavum DSM 44291] Length = 311 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 24/198 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R+ ++ + ++ +P E+ + ++ G++ R+ PG Sbjct: 114 QWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQAIELKDGKRKIVNRKLLPG 173 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ M D + +++TP V F+G N +PV ++ + Sbjct: 174 YVLVRMDMNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKEPTVVGDASQKSA 233 Query: 109 ---------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 + P + +EVGE V + G A+ + + +D E ++ V I Sbjct: 234 VNAEGETVIAMPEQEVAPKLAHDYEVGEAVTILTGALATVSATISEIDPESGKIQALVSI 293 Query: 160 FGRVTPVELAYNQVEKIV 177 FGR TPVEL +Q+E+I+ Sbjct: 294 FGRETPVELTADQIERIM 311 >gi|288929390|ref|ZP_06423235.1| transcription termination/antitermination factor NusG [Prevotella sp. oral taxon 317 str. F0108] gi|288329492|gb|EFC68078.1| transcription termination/antitermination factor NusG [Prevotella sp. oral taxon 317 str. F0108] Length = 181 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I L + + V ++ IP E+ S+R G++V E+ Sbjct: 6 KNWYVLRAVSGKEAKVKEYIEAELKHNTMLQSHVFQVLIPMEKQASLRNGKRVEKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV ++A + V HT++ P V+GFLG +NPSPV ++I ++ E + Sbjct: 66 PGYVFVEADLKGDVAHTLRFMPNVLGFLGGLDNPSPVPQADINRMLGAAENTELENDIDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V+DGPF+ F G+++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 126 PYSVDETVKVTDGPFSGFMGVIEEVNTEKHKLKVMVKIFGRKTPLELGFMQVEK 179 >gi|220913452|ref|YP_002488761.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6] gi|219860330|gb|ACL40672.1| NusG antitermination factor [Arthrobacter chlorophenolicus A6] Length = 267 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R+ ++ + EI +P E VV ++ ++ R PGY Sbjct: 85 WYVIHSYAGYENRVKANLETRIQTLDMEDYIFEIQVPMEEVVEIKNAQRKVINRVRIPGY 144 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 145 VLVRMDLTDASWGAVRHTPGVTGFVGNAHNPVPLRLDEVFSMLAPVFEEEQAEKGKPVNK 204 Query: 121 -------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V FEVGE V V +GPF + + + E + V V IF R TPV LA+NQV Sbjct: 205 QHQAPVDVDFEVGESVIVKEGPFETLPATISEIKVESQTLVVLVSIFERETPVTLAFNQV 264 Query: 174 EKI 176 KI Sbjct: 265 TKI 267 >gi|295396488|ref|ZP_06806649.1| transcription termination/antitermination factor NusG [Brevibacterium mcbrellneri ATCC 49030] gi|294970680|gb|EFG46594.1| transcription termination/antitermination factor NusG [Brevibacterium mcbrellneri ATCC 49030] Length = 270 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 18/190 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + E+ +P E VV V+ ++ R PGY Sbjct: 81 WYVIHSYAGYENRVKANLENRTVSLDMEDYIFEVQVPMEDVVEVKNAQRKTVRRVRIPGY 140 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---- 120 VL++ +TD+ + ++ TP V GF+G +P P+T E+ ++ V + ++ Sbjct: 141 VLVRMELTDESWGVVRHTPGVTGFVGNAYDPIPLTMDEVVSMLAPVIEEHEAARAAEEGE 200 Query: 121 --------------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V FEVGE V V +G F ++ + E+ ++ V + IF R PV Sbjct: 201 ARKAAEAASGSEIVVEFEVGETVMVKEGSFEGHPATIQEIRPEQQKLTVLLSIFERDVPV 260 Query: 167 ELAYNQVEKI 176 EL + QV KI Sbjct: 261 ELGFGQVSKI 270 >gi|196233624|ref|ZP_03132465.1| NusG antitermination factor [Chthoniobacter flavus Ellin428] gi|196222294|gb|EDY16823.1| NusG antitermination factor [Chthoniobacter flavus Ellin428] Length = 188 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 7/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY VQV + E K ++++ R+ + V E+ +P+ERV V++G+K + R+ PG Sbjct: 9 QWYAVQVLAGQENKVLDNLTKRIKTEEMSDFVYEVIVPTERVSEVKRGKKTETVRKLMPG 68 Query: 64 YVLIKAVM-------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 YVL+ + D+ ++ I++T VIGF G E P P+ SE+E ++ QV ++ Sbjct: 69 YVLVNMWLLDENRQPVDRTWYFIRETTGVIGFAGNKERPIPMRPSEVEAVLAQVRGTEEK 128 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F VGE V VSDGPF + +G V +D ++ ++ V + IFGR EL Y Q+E+ Sbjct: 129 AKPKIEFNVGETVKVSDGPFQNQSGTVTEIDPDRGKIRVSISIFGREAIAELEYWQIER 187 >gi|317495156|ref|ZP_07953526.1| transcription termination/antitermination factor NusG [Gemella moribillum M424] gi|316914578|gb|EFV36054.1| transcription termination/antitermination factor NusG [Gemella moribillum M424] Length = 181 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY++ YS E K ++I R+ ++ + I +P E+ + ++ R+ F Sbjct: 7 KEWYVIHTYSGYENKVKDNIEKRVESLNMEDKIFRIVVPEEKETIITPTGKRKEVNRKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ VMTD + +++TP V GF+G+ S + E I ++ V V Sbjct: 67 PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSSVVDV 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVG+ V V GPF G V N+D +V V + + GR T VEL +EK Sbjct: 127 DIEVGDHVRVISGPFVGMEGKVVNIDLNNYKVDVMIELMGRETKVELELYNIEK 180 >gi|89890187|ref|ZP_01201698.1| transcription termination/antitermination factor NusG [Flavobacteria bacterium BBFL7] gi|89518460|gb|EAS21116.1| transcription termination/antitermination factor NusG [Flavobacteria bacterium BBFL7] Length = 185 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V+ S E K + I ++ L + +I +P+E+VV +R G+K+N E+ +FP Sbjct: 9 MHWYVVRSVSGQENKIKDYIESEIAHHNLQDYLKQILVPTEKVVQIRNGKKINKEKVYFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119 GY++I+A + +V H IK VIGFLG G +P P+ SE+ ++ +V+ ++ Sbjct: 69 GYIMIQARLEGEVPHIIKSVNGVIGFLGETKGGDPVPLRKSEVNRMLGKVDELAEQVDNI 128 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ ++VGE + V DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 129 AIPYKVGETIKVVDGPFNGFNGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKV 185 >gi|315651271|ref|ZP_07904300.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Eubacterium saburreum DSM 3986] gi|315486475|gb|EFU76828.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Eubacterium saburreum DSM 3986] Length = 177 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 94/175 (53%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ F Sbjct: 3 EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI M D+ ++ +++T V GF+G G P P+T+ E+ + A V Sbjct: 63 PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTEDELVALGYSGNATKPEARLEV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V G + G++ V+E++ V + V +FGR T VEL + +V K+ Sbjct: 123 DLKVGDMVSVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVRKV 177 >gi|325299607|ref|YP_004259524.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170] gi|324319160|gb|ADY37051.1| NusG antitermination factor [Bacteroides salanitronis DSM 18170] Length = 180 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E I + + L V+++ IP+E+V VR G+K+ ER + Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIEAEMRNTELGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVLI+A + +V H +++ VIGFLG ++P P+ SE+ I+ V+ + + Sbjct: 65 PGYVLIEAALVGEVAHQLRNITNVIGFLGGLDHPVPLRQSEVNRILGTVDELQEVSEDMN 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V VS GPF+ F+G+++ V EK ++ V V IFGR TP+EL + VEK Sbjct: 125 VPYAVGETVKVSVGPFSGFSGVIEEVSAEKRKLKVMVKIFGRKTPLELGFTDVEK 179 >gi|23012400|ref|ZP_00052495.1| COG0250: Transcription antiterminator [Magnetospirillum magnetotacticum MS-1] Length = 244 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 108/151 (71%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY++ VYS EKK +SI + + G+ +I +P+E VV VR+G KVN+ER+FF Sbjct: 3 TARWYVIHVYSGFEKKVAQSIREQAEQKGMAEAFEQILVPTEEVVEVRRGTKVNAERKFF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K +TD +H +K+TPKV GFLG P P+T+ E E I+ QV+ V+RP S+ Sbjct: 63 PGYVLVKMNLTDDTWHLVKNTPKVTGFLGGKGRPVPITEREAERIIKQVQEGVERPKPSI 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSR 152 FEVGE+V VSDGPF SFNG+V+ VDEEK+R Sbjct: 123 TFEVGEQVRVSDGPFTSFNGMVEEVDEEKAR 153 >gi|119511572|ref|ZP_01630680.1| transcription antitermination protein NusG [Nodularia spumigena CCY9414] gi|119463807|gb|EAW44736.1| transcription antitermination protein NusG [Nodularia spumigena CCY9414] Length = 203 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + ++E + Sbjct: 18 EARWYAVQVASGCEKRVKTNLEQRIQTFDVSDKIVQVEIPHTPAVKIRKDGSRQHTEEKV 77 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ VM D + +++T VI F+G + + Sbjct: 78 FPGYVLVRMVMEDDTWQVVRNTSHVINFVGAEQKRGGSKSRGHVKPVPLGASEVERIFKQ 137 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + Q P+ + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 138 TSEQEPIVKIDMAAGDKIVVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 197 Query: 172 QVEK 175 QVEK Sbjct: 198 QVEK 201 >gi|194337666|ref|YP_002019460.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|194310143|gb|ACF44843.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 191 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 102/173 (58%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY +++YS E+K E+I + R GL + +I +P ER V V+ G+K + + FPG Sbjct: 17 RWYALRIYSGHERKVKEAIDADVIRCGLADKILQIYVPYERFVEVKNGKKRSLTKNAFPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI+AV+ + + I D P V+GFLG + P+P+ E+E I+ R V F Sbjct: 77 YVLIEAVLDKQTRNLILDIPSVMGFLGVDDVPTPLRPEEVEKILEPESTIEHRSVVEAPF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G+ V V DGPF+S G+V V E+ +V V + FGR TP EL ++QV+ + Sbjct: 137 RIGDSVKVIDGPFSSLTGVVHEVCTERMKVKVMISFFGRSTPTELDFSQVKSV 189 >gi|323141142|ref|ZP_08076045.1| transcription termination/antitermination factor NusG [Phascolarctobacterium sp. YIT 12067] gi|322414408|gb|EFY05224.1| transcription termination/antitermination factor NusG [Phascolarctobacterium sp. YIT 12067] Length = 186 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY++ YS E K ++ ++ G+++ + I IP+E+ V + +K E + F Sbjct: 8 KHWYVIHTYSGYENKVRANLERKVHSLGMENEIFRIEIPTEKEVEITSDGKKKVVEHKVF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP---V 118 PGYVL++ ++ ++ ++ +++T V GF+G+ +E + Sbjct: 68 PGYVLVEMIVNERNWYAVRNTAGVTGFVGSDSTHPTPLTAEEVRQIMPSMGMEVEETVKP 127 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + F++ +RV + PF F G + ++EEK ++ V V I GR TPVE+ + QVE+I Sbjct: 128 AKIDFQLHQRVRIKTAPFMDFEGTISEINEEKGKLKVLVDIMGRETPVEIDFTQVEEI 185 >gi|291521805|emb|CBK80098.1| transcription antitermination protein nusG [Coprococcus catus GD/7] Length = 187 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 3/175 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K +I + L+ + ++ +P + V+ V+ G+K +++ FPGY Sbjct: 13 WYVVHTYSGYENKVKTNIDKSIQNLHLEDQILDVQVPVQEVIEVKDGKKKTVQKKLFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS---V 121 VL+ +M D+ ++ +++T V GF+G P P+T+ E+ + + A + V Sbjct: 73 VLLHMIMNDETWYVVRNTRGVTGFVGPESKPVPLTEEEMAAMGINMNDAEKDEPDQMILV 132 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E G+ V + G + GIV++V+ V V + +FGR T VE+++ + K+ Sbjct: 133 DIEEGDMVNIVSGAWQDKEGIVQSVNSANGTVTVGLDMFGRETAVEISFLDIRKM 187 >gi|110589446|gb|ABG77232.1| transcription antitermination protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 179 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 + S+ R++R G++ E+ +P+E VV +R G++ SER+FFPGYVL++ M Sbjct: 13 PGSNAQVQRSLKERVARFGMEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEM 72 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 TD+ +H +KD PKV+GF+G P+TD E + I+ +V+ V++P V FE GE V Sbjct: 73 TDETWHLVKDVPKVLGFIGGYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVV 132 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V DGPF F+G+V+ VD EKSR+ V V+IFGR TPV+L + QVEK Sbjct: 133 RVVDGPFNDFSGVVEEVDYEKSRLKVSVLIFGRSTPVDLEFGQVEK 178 >gi|329907539|ref|ZP_08274680.1| Transcription antitermination protein NusG [Oxalobacteraceae bacterium IMCC9480] gi|327546946|gb|EGF31851.1| Transcription antitermination protein NusG [Oxalobacteraceae bacterium IMCC9480] Length = 164 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%) Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74 EK ++ R++R+G+D +I +P+E V+ V+ G+K +ERRFFPGYVL++ MTD+ Sbjct: 2 EKSVQRALTERVTRAGMDEKFGQILVPTEEVIEVKNGQKTVTERRFFPGYVLVEMEMTDE 61 Query: 75 VYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSD 133 +H +K+T KV GF+G P+P+ +E++ IM Q++ +++P V +EVGE V + D Sbjct: 62 TWHLVKNTSKVTGFIGGKSNKPTPIPPNEVDKIMQQMQEGIEKPRPKVLYEVGELVRIKD 121 Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GPF FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK Sbjct: 122 GPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEK 163 >gi|325285445|ref|YP_004261235.1| NusG antitermination factor [Cellulophaga lytica DSM 7489] gi|324320899|gb|ADY28364.1| NusG antitermination factor [Cellulophaga lytica DSM 7489] Length = 183 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ S E K I ++R G + ++ +P+E+VV VR G+K+N E+ +F Sbjct: 6 EKKWYVVRAVSGQENKIKGYIESEVARLGFSDYLEDVLVPTEKVVQVRNGKKINKEKVYF 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPV 118 PGY+++KA + ++ H I+ VIGFLG G +P P+ SE+ ++ +V+ AV Sbjct: 66 PGYIMVKANLGGEMVHIIRSITNVIGFLGEVKGGDPVPLRKSEVNRMLGKVDELAVTTDS 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F +GE + V DGPF FNG V+ ++EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 VAIPFVLGETIKVVDGPFNGFNGTVEKINEEKRKLEVMVKIFGRKTPLELSYMQVEKV 183 >gi|296111502|ref|YP_003621884.1| transcription antitermination protein NusG [Leuconostoc kimchii IMSNU 11154] gi|295833034|gb|ADG40915.1| transcription antitermination protein NusG [Leuconostoc kimchii IMSNU 11154] Length = 217 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 10/185 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R + + I +P + V +++ G S F Sbjct: 32 EKSWFVVHTYSGYEHKVKANLESRTQTMRMTEQIFRILVPEQEVTTIQDGEAKTSVENDF 91 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112 PGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ Sbjct: 92 PGYVLVEMATPQDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRM-G 150 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 R V ++ E G+ V + GPF+ G V VD EK + V +FGR TP EL + Sbjct: 151 MSTREVVTLDVEAGQIVKIIAGPFSGMEGTVTAVDPEKQTLEATVEVFGRETPTELDFAD 210 Query: 173 VEKIV 177 V+ ++ Sbjct: 211 VDTVL 215 >gi|313673493|ref|YP_004051604.1| transcription antitermination protein nusg [Calditerrivibrio nitroreducens DSM 19672] gi|312940249|gb|ADR19441.1| transcription antitermination protein nusG [Calditerrivibrio nitroreducens DSM 19672] Length = 175 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 4/177 (2%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ +WY+V YS EK+ + + ++ L EI IP+E VV + KG K S++ Sbjct: 1 MSNKQWYVVHTYSGFEKRVKKLLEEKIKNENLYDSFGEILIPTENVVELVKGTKKISKKS 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGY+L+ VM + +H +K PKV GF+G I A + P Sbjct: 61 TFPGYILVNMVMNTENWHKVKSIPKVTGFVGGVNPVPIPEQDVKAMID---LAKSEAPRI 117 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ + G+ V V DGPF F G+V V+ EK +V V V IFGR TP++L + Q++++ Sbjct: 118 AMKYIKGDVVEVVDGPFQGFTGVVDEVNTEKEKVKVIVSIFGRQTPIDLDFLQIKRV 174 >gi|268678989|ref|YP_003303420.1| transcription termination/antitermination factor NusG [Sulfurospirillum deleyianum DSM 6946] gi|268617020|gb|ACZ11385.1| transcription termination/antitermination factor NusG [Sulfurospirillum deleyianum DSM 6946] Length = 176 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E+ + I ++ G+ + +I +P+E V+ V+ G+K SER Sbjct: 1 MAHKWYAIQTYAGSEQAVKKGIITLVNDHGIAEKLEQIVVPTEDVIEVKNGKKKISERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGY K + ++H I+ PKV F+G + P+P+T+ +I I+ + P Sbjct: 61 YPGYAFAKLDLDTALWHLIQSLPKVGRFIGESKKPTPLTEKDIALILEK-AEKKGAPKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +FFE GE V +++GPFA+F G V+ D ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 120 IFFETGESVRITEGPFANFTGSVEEYDMVHGKLTLNVSIFGRSTPVEILYSQVEKIV 176 >gi|199598558|ref|ZP_03211975.1| Transcription antiterminator [Lactobacillus rhamnosus HN001] gi|229552909|ref|ZP_04441634.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus LMS2-1] gi|258509294|ref|YP_003172045.1| transcription antitermination protein NusG [Lactobacillus rhamnosus GG] gi|258540480|ref|YP_003174979.1| transcription antitermination protein nusG [Lactobacillus rhamnosus Lc 705] gi|199590600|gb|EDY98689.1| Transcription antiterminator [Lactobacillus rhamnosus HN001] gi|229313717|gb|EEN79690.1| transcriptional antiterminator NusG [Lactobacillus rhamnosus LMS2-1] gi|257149221|emb|CAR88194.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus GG] gi|257152156|emb|CAR91128.1| Transcription antitermination protein nusG [Lactobacillus rhamnosus Lc 705] gi|259650575|dbj|BAI42737.1| transcription antiterminator [Lactobacillus rhamnosus GG] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E K ++ R S +D + + +P E + G++ ++ F Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ +++ + + Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVASVLHSMG--MSTRH 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F+VGE V + DG F +G V VD++K ++ V +F R EL ++QV+K+ Sbjct: 127 QDVEFDVGEPVTIIDGAFTGMHGKVTAVDKDKMKLKVVTEMFDREVTAELDFDQVDKL 184 >gi|260437417|ref|ZP_05791233.1| transcription termination/antitermination factor NusG [Butyrivibrio crossotus DSM 2876] gi|292810049|gb|EFF69254.1| transcription termination/antitermination factor NusG [Butyrivibrio crossotus DSM 2876] Length = 175 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K +I + L+ + E+++P + V ++ G K +++ FPGY Sbjct: 10 WYVVHTYSGYENKVKANIEKTIENRHLEDQILEVSVPLQDAVEIKNGVKKQVQKKIFPGY 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VLI ++ D ++ +++T V GF+G G P P+TD E+ ++ + + Sbjct: 70 VLIHMILNDDTWYVVRNTRGVTGFVGPGSKPVPLTDEEMNNLGISIGKVAAE------YS 123 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G+ V G + + G +K++++ K V + V +FGR TPVEL + ++ I Sbjct: 124 LGDTVMAISGVWENTVGEIKSINDNKQTVTITVDMFGRETPVELGFTEIRHI 175 >gi|330997390|ref|ZP_08321241.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] gi|329570764|gb|EGG52480.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] Length = 181 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E I + + V+++ IP+E+VV VR G+++ ER Sbjct: 5 EMKWYVMRAVSGKESKVKEYIDAEIKKGDFGKFVSQVLIPTEKVVQVRNGKRIVKERNHL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++A + ++ +++TP V+GFLG + NP+P+ SE+ ++ V+ P Sbjct: 65 PGYVLVEAALVGEIPVLLRNTPNVLGFLGESNSNPTPLRQSEVNRLLGAVDEMQDVPEEV 124 Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + GE V V++GPF+ F+ +++ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 125 LIPYAEGETVKVTEGPFSGFSAVIEEVNNEKKKLKVMVKIFGRKTPLELGFMQVEK 180 >gi|266621462|ref|ZP_06114397.1| transcription termination/antitermination factor NusG [Clostridium hathewayi DSM 13479] gi|288866903|gb|EFC99201.1| transcription termination/antitermination factor NusG [Clostridium hathewayi DSM 13479] Length = 171 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P E V+ ++ G + ++++ F Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+T+ E+ ++ + V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMANLGFR------NEEVIV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V G + G +K+++E K + + V +FGR TPVEL +N+++K+ Sbjct: 117 DFEVGDTVVVISGAWKDTVGAIKSINEGKKSITINVEMFGRETPVELNFNEIKKM 171 >gi|225420372|ref|ZP_03762675.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme DSM 15981] gi|225040991|gb|EEG51237.1| hypothetical protein CLOSTASPAR_06717 [Clostridium asparagiforme DSM 15981] Length = 171 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P VV ++ G + ++++ F Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ E++ + + E V V Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEDEMKGLGFRHEDVV------V 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V++G + G +K +++ K V + V +FGR TPVEL + +V+K+ Sbjct: 117 DFEVGDTVVVTNGAWKDTVGAIKAINDGKKTVTINVEMFGRETPVELGFAEVKKM 171 >gi|223982628|ref|ZP_03632862.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM 12042] gi|223965408|gb|EEF69686.1| hypothetical protein HOLDEFILI_00136 [Holdemania filiformis DSM 12042] Length = 182 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V Y+ E + E++ R+ G+ + I + E + + G+KV FP Sbjct: 6 KEWYVVNTYAGHENRVKENLQRRVDTMGISDYLFRILVAEEPEIEYKNGKKVEKMHNLFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ +MTD+ ++ +++TP V GF+ G G P PV+ EI+ I+ ++ + ++ Sbjct: 66 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVSPEEIDSILRRIGMSDRKV-- 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SV F G+RV + GPF+ G + ++++ V ++FGR TP E+AYN +EK+ Sbjct: 124 SVNFTTGDRVKILTGPFSGIEGSIDAMNDDTQTATVLCILFGRETPTEIAYNDLEKV 180 >gi|67925194|ref|ZP_00518562.1| transcription antitermination protein NusG [Crocosphaera watsonii WH 8501] gi|67852953|gb|EAM48344.1| transcription antitermination protein NusG [Crocosphaera watsonii WH 8501] Length = 214 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S CEK+ ++ R+ + + +I IP V VRK + E + FP Sbjct: 31 RWYAVQVASGCEKRVKNNLEQRIQTLDVADRILQIQIPKTPTVKVRKDGSRQQGEEKVFP 90 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------- 115 GYVL++ +M D + +K+TP VI F+G+ + + + + V+ Sbjct: 91 GYVLVRMIMDDDAWLVVKNTPNVINFVGSEQRRAYGRRRGHVKPLPLSASEVERIFRQAE 150 Query: 116 --RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 P+ + E+G+++ V GPF F G V V E++++ + IFGR TPVEL +NQV Sbjct: 151 QPEPLVKIDMEIGDKILVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFNQV 210 Query: 174 EK 175 EK Sbjct: 211 EK 212 >gi|227536126|ref|ZP_03966175.1| transcription antitermination protein NusG [Sphingobacterium spiritivorum ATCC 33300] gi|300772097|ref|ZP_07081967.1| transcription termination/antitermination factor NusG [Sphingobacterium spiritivorum ATCC 33861] gi|227244023|gb|EEI94038.1| transcription antitermination protein NusG [Sphingobacterium spiritivorum ATCC 33300] gi|300760400|gb|EFK57226.1| transcription termination/antitermination factor NusG [Sphingobacterium spiritivorum ATCC 33861] Length = 181 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +WY+V+ S EKK + I +SR G+ HLV ++ IP E+ +R G+KV ER ++ Sbjct: 5 SLKWYVVRAVSGKEKKVKQYIDAEISRLGIQHLVAQVLIPMEKYYQMRDGKKVAKERNYY 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVS 119 PGYVLI+A + + H IK+ VIGFLG N P+ SE+ I+ +V+ ++ Sbjct: 65 PGYVLIEASLDAETEHVIKNINSVIGFLGDKAGNAIPLRPSEVNRILGKVDEMAEQGETI 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +V + VGE V V+DGPF F G ++ V E+K ++ V V +FGR TP+EL Y QVEK Sbjct: 125 NVPYYVGETVKVNDGPFNGFTGEIEEVHEDKKKLIVMVKVFGRKTPLELNYMQVEK 180 >gi|302337466|ref|YP_003802672.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293] gi|301634651|gb|ADK80078.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ YS E K + + +T++ +PSE VV V+ G+K + R+F Sbjct: 1 MAKGWYVLHTYSGYENKIERFLRKMMGDGDFGDALTDVKVPSEEVVEVKDGKKKVTNRKF 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAV 114 PGY+L++ + D+ + IK V GF+G G P P++ E + I+ + Sbjct: 61 LPGYILLEMDLPDRGWKAVCSQIKKIQGVTGFVGAPVGAKPQPISSDEAKAILQKSGEIK 120 Query: 115 QR--PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 F VGE V + DGPF +F G ++ V+ EK ++ V V IFGR TPVE+ + Q Sbjct: 121 ADRTVRPRQSFSVGEVVRIVDGPFDTFTGNIEEVNLEKGKLRVMVGIFGRSTPVEVDFLQ 180 Query: 173 VEKI 176 VEKI Sbjct: 181 VEKI 184 >gi|300812659|ref|ZP_07093071.1| transcription termination/antitermination factor NusG [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496389|gb|EFK31499.1| transcription termination/antitermination factor NusG [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 194 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E + +G+K + FP Sbjct: 17 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120 GYVL++ VMTD+ + +++TP V GF+G+ S + E + Q++ Sbjct: 77 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 136 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V ++ G F G + + ++K ++ + + +FG T EL ++QV+K+ Sbjct: 137 YDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHATTAELGFDQVKKM 192 >gi|116495742|ref|YP_807476.1| transcription antiterminator [Lactobacillus casei ATCC 334] gi|227533698|ref|ZP_03963747.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630147|ref|ZP_04673178.1| transcription antiterminator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067297|ref|YP_003789320.1| transcription antiterminator [Lactobacillus casei str. Zhang] gi|116105892|gb|ABJ71034.1| transcription antitermination protein nusG [Lactobacillus casei ATCC 334] gi|227188682|gb|EEI68749.1| transcriptional antiterminator NusG [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527759|gb|EEQ66760.1| transcription antiterminator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439704|gb|ADK19470.1| Transcription antiterminator [Lactobacillus casei str. Zhang] gi|327383308|gb|AEA54784.1| NusG antitermination factor [Lactobacillus casei LC2W] gi|327386491|gb|AEA57965.1| NusG antitermination factor [Lactobacillus casei BD-II] Length = 184 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E K ++ R S +D + + +P E + G++ ++ F Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMG--MSTRH 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+ Sbjct: 127 NDVEFDVGEPVTIIDGAFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184 >gi|282899203|ref|ZP_06307177.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281195886|gb|EFA70809.1| NusG antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 209 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + +E + Sbjct: 24 EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ +M+D + +K+T VI F+G + + Sbjct: 84 FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSGRSRGHVKPVPLSNSEVERIFKQ 143 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203 Query: 172 QVEK 175 QV+K Sbjct: 204 QVQK 207 >gi|313904451|ref|ZP_07837828.1| NusG antitermination factor [Eubacterium cellulosolvens 6] gi|313470787|gb|EFR66112.1| NusG antitermination factor [Eubacterium cellulosolvens 6] Length = 174 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 4/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + L+ + E+ +P E VV V+ G K +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKANIEKTIENRHLEDQILEVRVPLEDVVEVKNGVKKQVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ +M ++ +++T V GF+G+ + + Sbjct: 63 PGYVLVHMIMNKDNWYVVRNTRGVTGFVGSNPQEPVPLSPAEMQPLG----VGSEEKMVI 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+G++V V GP+ G + +++ K V + V +FGR TPVE+ + +V K+ Sbjct: 119 DLEIGDQVVVIGGPWKDSEGEITAINQSKQTVTINVEMFGRATPVEIGFAEVRKV 173 >gi|329944007|ref|ZP_08292275.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 170 str. F0386] gi|328531208|gb|EGF58054.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 170 str. F0386] Length = 321 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 32/208 (15%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56 M+ +WY++ YS E++ I R ++ + + T+P E V+ ++ +K Sbjct: 114 MSALPGQWYVLHTYSGYERRVATDIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 173 Query: 57 ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 R PGYV ++ + D + TIKDTP V GF+G NP P+T E + Sbjct: 174 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 233 Query: 112 AAVQRPV-----------------------SSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + V FEVGE V V+DGPF S + + Sbjct: 234 EEIAAKETAAVEATAPETGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHP 293 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E ++ V + +FGR TP EL++ QV KI Sbjct: 294 ETQKLQVLISLFGRDTPAELSFTQVAKI 321 >gi|260588883|ref|ZP_05854796.1| transcription termination/antitermination factor NusG [Blautia hansenii DSM 20583] gi|331083427|ref|ZP_08332539.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 6_1_63FAA] gi|260540662|gb|EEX21231.1| transcription termination/antitermination factor NusG [Blautia hansenii DSM 20583] gi|330404120|gb|EGG83668.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 6_1_63FAA] Length = 173 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L+ + E+ +P + VV ++ G K +++ F Sbjct: 3 EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGEKKQVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ EIE + V+ + Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEGEIEALGISFTGDVE-----I 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V+ G + G+V++++E K V + V +FGR TPV+L++ +V+ Sbjct: 118 DFTEGDSVVVTGGVWKDTVGVVQSINEAKQIVTINVELFGRETPVDLSFAEVK 170 >gi|227873027|ref|ZP_03991322.1| transcriptional antiterminator NusG [Oribacterium sinus F0268] gi|227841102|gb|EEJ51437.1| transcriptional antiterminator NusG [Oribacterium sinus F0268] Length = 176 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+ YS E K + + GL ++ E+++P + V+ V+ G + ++++ F Sbjct: 7 EARWYVAHTYSGYENKVKMDLEKTIDNRGLQDVILEVSVPMQPVIEVKNGVEKKTDKKMF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D+ ++ +++T V GF+G G P P+++ EI + + + V Sbjct: 67 PGYVLVNMVMNDETWYVVRNTRGVTGFVGPGSKPVPLSEEEILTLGYR------KSEVLV 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V V G + G++ ++++K V + V +FGR TPVEL+Y +V+K+ Sbjct: 121 DFAEGDTVSVVSGAWKDTVGVITEINDQKKTVTINVEMFGRDTPVELSYGEVQKL 175 >gi|303237461|ref|ZP_07324026.1| transcription termination/antitermination factor NusG [Prevotella disiens FB035-09AN] gi|302482281|gb|EFL45311.1| transcription termination/antitermination factor NusG [Prevotella disiens FB035-09AN] Length = 181 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 +WY+++ S E K E I L + L V E+ +P+E S+R G++V +E+ Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAELRQNAKLAERVFEVLLPTESHASLRNGKRVVTEKLS 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++A+M +V T++ P V+GFLG P+PV +E+ ++ VE V Sbjct: 65 LPGYVLVEAIMNSEVASTLRFMPNVLGFLGGVAEPTPVRQAEVNRLLGNVEDTALEEVQD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 IPYTVGESVKVTDGPFSGFHGIIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 179 >gi|86134005|ref|ZP_01052587.1| transcriptional antitermination factor NusG [Polaribacter sp. MED152] gi|85820868|gb|EAQ42015.1| transcriptional antitermination factor NusG [Polaribacter sp. MED152] Length = 182 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ E K I +SR GL V ++ +P+E+VV +R G+KVN ER +FP Sbjct: 6 MKWYVVRAIGGQENKVKNYIETEISRVGLSDYVNQVIVPTEKVVQIRNGKKVNRERVYFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA-AVQRPVS 119 GY++++A ++ +V H IK VIGFLG G P P+ SE+ ++ +V+ +VQ Sbjct: 66 GYIMVEANLSGEVPHVIKAITGVIGFLGEVKGGEPVPMRKSEVNRMLGKVDELSVQDENI 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ + VGE V V DGPF F+G ++ V+EEK ++ V V IFGR TP+EL+Y QVEKI Sbjct: 126 AIPYNVGETVKVVDGPFNGFDGTIEKVNEEKRKLEVMVKIFGRKTPLELSYMQVEKI 182 >gi|206900373|ref|YP_002251089.1| transcription termination/antitermination factor NusG [Dictyoglomus thermophilum H-6-12] gi|206739476|gb|ACI18534.1| transcription termination/antitermination factor NusG [Dictyoglomus thermophilum H-6-12] Length = 176 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ F Sbjct: 3 EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ V + V I++T V GF+GT PS + E I +E RP V Sbjct: 63 PGYLFIRMVEDEDVIRLIRNTTGVTGFVGTPGRPSTLNPQEEHWIKRFLEQKEIRPELKV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVKVLLSIFGRETPTEIDHTQVEK 174 >gi|134096333|ref|YP_001101408.1| transcription antitermination protein [Herminiimonas arsenicoxydans] Length = 159 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + ++ R++R+G+ +I +P+E V+ V+ G+K SERRFFPGYVL++ MTD+ +H Sbjct: 1 MRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFPGYVLVEMEMTDETWHL 60 Query: 79 IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +K+T KV GF+G P+P+ E++ IM Q++ V++P V +EVGE V + DGPF Sbjct: 61 VKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKVLYEVGEMVRIKDGPFT 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG V+ V+ EKS+V V V IFGR TPVEL + QVEK+ Sbjct: 121 DFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 159 >gi|295397927|ref|ZP_06807984.1| transcription termination/antitermination factor NusG [Aerococcus viridans ATCC 11563] gi|294973812|gb|EFG49582.1| transcription termination/antitermination factor NusG [Aerococcus viridans ATCC 11563] Length = 184 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61 WY++ Y+ E K +++ R++ ++ + + +P E V + G++ + + F Sbjct: 9 KEWYVIHTYAGYENKVKQNLEMRITSMDMEDYIYRVIVPEEEHVEKTKSGKENIVKIKNF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++ +M+D+ + +++TP V GFLG+ S T + + N + + + Sbjct: 69 PGYVLVEMIMSDEAWFVVRNTPGVTGFLGSHGQGSKPTPLLPDEVRNILSSLGEGGRNRD 128 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F++ E V V DG F G V+ +D E ++ + V +FGR T E+ Y+QV+K Sbjct: 129 ISFDIDEVVKVIDGAFDGMEGRVQEIDAEHGKLKLTVEMFGRETLAEVDYDQVDK 183 >gi|282896127|ref|ZP_06304153.1| NusG antitermination factor [Raphidiopsis brookii D9] gi|281199045|gb|EFA73920.1| NusG antitermination factor [Raphidiopsis brookii D9] Length = 209 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP V +RK + +E + Sbjct: 24 EARWYAVQVASGCEKRVKTTLEQRIQTFDVADKIIQVEIPHTPAVKIRKDGTRQQTEEKV 83 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVL++ +M+D + +K+T VI F+G + + Sbjct: 84 FPGYVLVRMMMSDDTWQIVKNTSHVINFVGAEQKHGSSRSRGHVKPVPLSNSEVERIFKQ 143 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL +N Sbjct: 144 TTEQEPVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFN 203 Query: 172 QVEK 175 QV+K Sbjct: 204 QVQK 207 >gi|254431017|ref|ZP_05044720.1| transcription termination/antitermination factor NusG [Cyanobium sp. PCC 7001] gi|197625470|gb|EDY38029.1| transcription termination/antitermination factor NusG [Cyanobium sp. PCC 7001] Length = 231 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K + ++E + FP Sbjct: 48 RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPGVKLKKDGSRQSTEEKVFP 107 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G E P P++ E++ I + Sbjct: 108 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEERRATARARGHIKPRPLSRQEVDRIFKRAA 167 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL + Sbjct: 168 E--KKPVVKVDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFA 225 Query: 172 QVEK 175 Q+ K Sbjct: 226 QISK 229 >gi|87300788|ref|ZP_01083630.1| transcription antitermination protein NusG [Synechococcus sp. WH 5701] gi|87284659|gb|EAQ76611.1| transcription antitermination protein NusG [Synechococcus sp. WH 5701] Length = 226 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 14/187 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERR 59 M RWY VQV S+CEKK ++ R G+D + EI IP V ++K + E + Sbjct: 40 MVARWYAVQVASSCEKKVKATLEQRAITLGVDSRILEIEIPQTPAVKLKKDGSRQAAEEK 99 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMN 108 FPGYVL++ ++ + ++ TP VI F+G E P P++ E++ I Sbjct: 100 VFPGYVLVRMMLDEDTMMAVRSTPNVINFVGQEERRSTGRARGHIKPRPLSRQEVDRIFK 159 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + ++PV V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL Sbjct: 160 RAAE--KKPVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVEL 217 Query: 169 AYNQVEK 175 + Q+ K Sbjct: 218 EFAQISK 224 >gi|311739242|ref|ZP_07713079.1| transcription antitermination protein NusG [Corynebacterium pseudogenitalium ATCC 33035] gi|311305668|gb|EFQ81734.1| transcription antitermination protein NusG [Corynebacterium pseudogenitalium ATCC 33035] Length = 306 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++A + D + I++TP V F+G N +PV ++ + Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230 Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + + FEVGE V + GP A+ + + +D E ++ V IFG Sbjct: 231 AEGEQVVAMPEKEEAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL+ ++E+I Sbjct: 291 RETPVELSPTEIERI 305 >gi|288573182|ref|ZP_06391539.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568923|gb|EFC90480.1| NusG antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 103/178 (57%), Gaps = 4/178 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYIVQ Y+ E K ++ R++ G++ + ++ +P E V V+ G+ ++ FP Sbjct: 7 KKWYIVQTYAGYENKVKANLEQRIATMGMEDKIFDVLVPVEEKVVVKDGKSKKVTKKLFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPV 118 YVL++ VM D+ ++ ++ TP V GF+G+G +P P++D E++ IM+++ RPV Sbjct: 67 SYVLVEMVMEDQPWYVVRHTPGVTGFVGSGNHPIPLSDREVDDIMSKIGLSGSKKNNRPV 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + G+ + V GPF G + V EK +V V +FGR T VE+ Y +++K+ Sbjct: 127 FEMDLKKGDVIKVKSGPFEGAVGPIIEVLPEKGKVKFSVSVFGRDTLVEIDYIEIDKL 184 >gi|160881812|ref|YP_001560780.1| NusG antitermination factor [Clostridium phytofermentans ISDg] gi|160430478|gb|ABX44041.1| NusG antitermination factor [Clostridium phytofermentans ISDg] Length = 172 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 7/175 (4%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ WY+V YS E K +I + L + E+++P + V+ V+ G K +++ Sbjct: 1 MSDANWYVVHTYSGYENKVKANIEKTIENRKLQDQILEVSVPLQDVIEVKNGVKKKVQKK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+ +M D ++ +++T V GF+G G P P+TD E++ + +++ Sbjct: 61 MFPGYVLLNMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDFEMKSM------GIKKDEM 114 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F VG+ V V G + + G++K ++E K V + + +FGR TPVE+++ V Sbjct: 115 VIDFAVGDTVTVVSGVWENTQGVIKAINEHKQIVTINIDMFGRETPVEISFTDVR 169 >gi|282878708|ref|ZP_06287476.1| transcription termination/antitermination factor NusG [Prevotella buccalis ATCC 35310] gi|281299099|gb|EFA91500.1| transcription termination/antitermination factor NusG [Prevotella buccalis ATCC 35310] Length = 181 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I + + L V+++ IP E++ ++R G++V E+ Sbjct: 6 KNWYVLRAVSGKEAKLKEYIEAEIKHNTLLQQHVSQVLIPMEKLATLRNGKRVEKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ + E V Sbjct: 66 PGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGEAEDTEIMNGIEV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 126 PYEVDEVVKVTDGPFSGFSGVIEEVNAEKHKLKVLVKIFGRKTPLELSFMQVEK 179 >gi|86608696|ref|YP_477458.1| transcription antitermination protein NusG [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557238|gb|ABD02195.1| transcription termination/antitermination factor NusG [Synechococcus sp. JA-2-3B'a(2-13)] Length = 221 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 10/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWY VQV S CE K ++ R + + + E+ IP + R G++ E + FP Sbjct: 38 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 97 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVEAA 113 GYVL++ M D + +K TP VI F+GT E + Sbjct: 98 GYVLVRMDMNDDTWMVVKTTPNVINFVGTEEKRAYGRGRGHVTPRPLSQSEVQRIFSSVE 157 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V+ + G+R+ V GPF F G V V E+ ++ + IFGR TPVEL + QV Sbjct: 158 VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVEVSPERGKLKALISIFGRDTPVELEFGQV 217 Query: 174 EKIV 177 K V Sbjct: 218 RKEV 221 >gi|227487148|ref|ZP_03917464.1| transcription antitermination protein NusG [Corynebacterium glucuronolyticum ATCC 51867] gi|227541685|ref|ZP_03971734.1| transcription antitermination protein NusG [Corynebacterium glucuronolyticum ATCC 51866] gi|227092806|gb|EEI28118.1| transcription antitermination protein NusG [Corynebacterium glucuronolyticum ATCC 51867] gi|227182500|gb|EEI63472.1| transcription antitermination protein NusG [Corynebacterium glucuronolyticum ATCC 51866] Length = 255 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI+Q YS E K ++ R +D + +I +P E V +R G+K +++ PGY Sbjct: 66 WYIIQTYSGYENKVKTNLTQRAENLEVDEYIHDIVVPVEEVTEMRDGKKKIVKKKLLPGY 125 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV---------- 114 VL++ M D V+ ++ TP V F+G +PV ++ + +A Sbjct: 126 VLVRMEMNDSVWSVVRGTPGVTSFVGNEGQATPVKPKDVAKFLMPQQAVEEQAADAEGDT 185 Query: 115 -------QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 ++ V FEVGE V + G A+ + + ++D + ++H V IFGR TPVE Sbjct: 186 VVAAPAAEKKPVEVDFEVGESVTILSGALATVSATISDIDRDSGKLHALVSIFGRDTPVE 245 Query: 168 LAYNQVEKI 176 L ++QVEKI Sbjct: 246 LTFDQVEKI 254 >gi|330718911|ref|ZP_08313511.1| transcription antitermination protein nusG [Leuconostoc fallax KCTC 3537] Length = 188 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R G+ + I +P + V +++ G + F Sbjct: 6 EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIKDGEAKQTIENDF 65 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGTGENPSPVT--DSEIEHIMNQVEAA 113 PGYVL++ MTD+ ++ +++TP V GFLG+ S E ++ + Sbjct: 66 PGYVLVEMATPQEGNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLLPEEVELLLRRMGM 125 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V R + E+G+ V + GPF+ GIV ++D EK + V +FGR TP EL++ + Sbjct: 126 VTRETVDLDVEIGDAVKIIAGPFSGMEGIVTSIDPEKQAIEATVEVFGRETPTELSFTDI 185 >gi|218283698|ref|ZP_03489659.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989] gi|218215687|gb|EEC89225.1| hypothetical protein EUBIFOR_02253 [Eubacterium biforme DSM 3989] Length = 181 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 101/177 (57%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V Y E + E++ R+ GL+ + +I + E+ + + G+ V F Sbjct: 6 KEWYVVNTYVGQENRVKENLERRIKTMGLEDFLFQIVVAEEKEIEYKNGKPVEKTHNLFS 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+L++ +MTD+ ++ +++TP V GF+G+ P PV E++ ++ ++ Q Sbjct: 66 GYLLVQMIMTDEAWYIVRNTPGVTGFIGSSGKGAKPFPVAQEEVDAVLRRLGR--QDVNV 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+RV +++G F + G ++++DEEK V +++FGR TP E+ Y ++K+ Sbjct: 124 QVDFEVGDRVEITNGAFKNSEGTIESMDEEKKEATVLLILFGRETPTEIPYMDLKKV 180 >gi|260655340|ref|ZP_05860828.1| transcription termination/antitermination factor NusG [Jonquetella anthropi E3_33 E1] gi|260629788|gb|EEX47982.1| transcription termination/antitermination factor NusG [Jonquetella anthropi E3_33 E1] Length = 185 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 97/174 (55%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ VQ YS E K ++ R++ + + + +P E VV V+ G+ R+ FP Sbjct: 12 QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSVF 122 YVL++ +M D+ ++ ++ TP V GF+G G +P P++D E+ ++ +V + P V Sbjct: 72 YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V GPF G+V +V+ +V + +FGR T E+ + ++E++ Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >gi|217967757|ref|YP_002353263.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724] gi|217336856|gb|ACK42649.1| NusG antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 176 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 P+W++V + E K + ++ + L+ V EI +P E+V++V+ G+K ++ F Sbjct: 3 EPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ + + V I++T V GF+GT PS + E I +E RP V Sbjct: 63 PGYLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+RV + GPF + G V V EK V V + IFGR TP E+ + QVEK Sbjct: 123 --KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174 >gi|330812087|ref|YP_004356549.1| transcription antitermination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380195|gb|AEA71545.1| transcription antitermination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 159 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E E I+ +V +P FE GE V V+DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159 >gi|320527651|ref|ZP_08028825.1| transcription termination/antitermination factor NusG [Solobacterium moorei F0204] gi|320131972|gb|EFW24528.1| transcription termination/antitermination factor NusG [Solobacterium moorei F0204] Length = 196 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 100/177 (56%), Gaps = 6/177 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWY+V Y+ E + E++ R+ G+ + I + E + + G+ + + FP Sbjct: 19 RWYVVNTYAGHENRVKENLEKRVETMGIQDSLFRIVVAEETETVIGKDGKPKDVKTNVFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ MTD+ ++ +++TP V GF+G G P PV E+E I+ ++ + ++ Sbjct: 79 GYLFVEMKMTDEAWYVVRNTPGVTGFIGSSGGGAKPFPVAPDEMEAILRRIGQSDKK--I 136 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ FE+G+ V + GPF+ G V +++++ +V +++FGR TP ++ Y +EK+ Sbjct: 137 SIDFEIGDTVKILAGPFSGMEGRVASLNDQTQTANVLIMLFGRETPTDINYGDLEKV 193 >gi|317057218|ref|YP_004105685.1| NusG antitermination factor [Ruminococcus albus 7] gi|315449487|gb|ADU23051.1| NusG antitermination factor [Ruminococcus albus 7] Length = 175 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 4/174 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ F Sbjct: 4 EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVRIPMETVTEIKGEKTVEAEKKLF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K V+TD ++ +++T V GF+G G P P++D E+E + V Sbjct: 64 PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDREVEA----LGVDVGTQTVRT 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VG+ V + G F +G V ++D E + V V +FGR T V L Q+ K Sbjct: 120 DIAVGDDVIMVGGSFDGMSGTVSSLDLENAAADVTVSMFGRETTVTLPLTQLRK 173 >gi|154484467|ref|ZP_02026915.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC 27560] gi|149734315|gb|EDM50232.1| hypothetical protein EUBVEN_02181 [Eubacterium ventriosum ATCC 27560] Length = 172 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L + E+++P++ VV ++ G + SE++ F Sbjct: 3 EANWYVVHTYSGYENKVKTTIEQTIENRKLHDQILEVSVPTQEVVELKNGVRKVSEKKLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+TD+E+ + ++ V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDTEM------LSLGIKNEKVEV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ G+ + V G ++ G+VK +DE + V + V +FGR TPVEL + +V+K+ Sbjct: 117 DFKEGDMIAVIGGVWSGTAGVVKRIDENRQTVTINVDMFGRETPVELNFTEVKKM 171 >gi|313884771|ref|ZP_07818526.1| transcription termination/antitermination factor NusG [Eremococcus coleocola ACS-139-V-Col8] gi|312620032|gb|EFR31466.1| transcription termination/antitermination factor NusG [Eremococcus coleocola ACS-139-V-Col8] Length = 181 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 1/173 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ YS E K E+I R ++ + + +P E V V+ G + + + FP Sbjct: 5 KEWYVLHTYSGYENKVKENIDLRKESMDMEDNIFRVEVPEEEVTEVKDGERTSKVEKTFP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121 GYVL++ +M+D + +++TP V GF+G+ S E + + +P + Sbjct: 65 GYVLVEMIMSDDAWFVVRNTPGVTGFVGSHGAGSKPAPLLEEEVEAILGDRPMKPAPVEL 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + DGPFA+F+G ++ + +E R+ V + + GR T EL + QV Sbjct: 125 DVAVGDYVDIVDGPFANFSGQIEEISQETQRLKVVLEMMGRETVTELDFAQVR 177 >gi|193213527|ref|YP_001999480.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327] gi|193087004|gb|ACF12280.1| NusG antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 191 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 102/173 (58%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY +++YS E+K E I R GL + ++ IP ER V V+ G+K + + FPG Sbjct: 17 HWYALRIYSGHERKVKEGIEMEAERHGLVDKIKQVYIPYERFVEVKNGKKRSLTKNAFPG 76 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++AV+ + + I D P V+GFLG +NP+P+ E+E I+ A R V F Sbjct: 77 YVLLEAVLDKQTRNLIMDIPSVMGFLGVDDNPTPLRPDEVEKILVPESAVEHRAVVEAPF 136 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V V DGPF+S GIV V E+ +V V + FGR TP EL ++QV+ + Sbjct: 137 KVGDSVKVIDGPFSSLTGIVHEVCTERMKVKVMINFFGRSTPTELDFSQVKSV 189 >gi|189218811|ref|YP_001939452.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4] gi|189185669|gb|ACD82854.1| Transcription antiterminator NusG [Methylacidiphilum infernorum V4] Length = 201 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 8/180 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY + V S E+K +++ R+ + LV E+ IP ERV VRKG+++ R+ +P Sbjct: 21 MQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYP 80 Query: 63 GYVLIKAVMTD-------KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 GYV ++ + D + ++ +++T VIGF G+NP P+ ++E ++ Q++ Sbjct: 81 GYVFLQIQLRDSSGKLIERAWYFVRETSGVIGFA-DGDNPLPMPREQVEGMLRQIQERTS 139 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F VG+RV V DGPF + G+++ VD E+ ++ V V IFGR TPVEL Y QVEK Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199 >gi|149177085|ref|ZP_01855693.1| transcription antiterminator NusG [Planctomyces maris DSM 8797] gi|148844150|gb|EDL58505.1| transcription antiterminator NusG [Planctomyces maris DSM 8797] Length = 194 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 2/177 (1%) Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 R WY+++V SN EK +++ + R GL+ EI IP+E+VV + G+K ER+ Sbjct: 18 EKRLWYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKL 77 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VS 119 +PGY++I+ + D ++ ++ T V F G P P+ + EI ++ + E+ + P Sbjct: 78 YPGYLMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKI 137 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F+VG+ V V D F F G + VDE +V V + IF R TP EL Y Q+EK+ Sbjct: 138 KLDFQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194 >gi|300742100|ref|ZP_07072121.1| transcription termination/antitermination factor NusG [Rothia dentocariosa M567] gi|300381285|gb|EFJ77847.1| transcription termination/antitermination factor NusG [Rothia dentocariosa M567] Length = 255 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K I R+ + + E+ +P E VV + K R PGY Sbjct: 75 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 134 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 135 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEDQQSKGLPTP 194 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK Sbjct: 195 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 254 Query: 176 I 176 I Sbjct: 255 I 255 >gi|325678944|ref|ZP_08158542.1| transcription termination/antitermination factor NusG [Ruminococcus albus 8] gi|324109448|gb|EGC03666.1| transcription termination/antitermination factor NusG [Ruminococcus albus 8] Length = 175 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 4/174 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K ++I + L L+ E+ IP E V ++ + V +E++ F Sbjct: 4 EAKWYVVHTYSGYENKVAQNIEKVVENRKLHDLIPEVKIPMETVTEIKGTKTVEAEKKLF 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YVL+K V+TD ++ +++T V GF+G G P P++D E+E + Sbjct: 64 PSYVLVKMVLTDDSWYIVRNTRGVTGFVGPGSKPVPLSDKEVEA----LGVDTGTQTVQT 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 EVG+ V + G F +G V +D E + V V +FGR T V L Q+ K Sbjct: 120 NIEVGDDVVMVGGSFDGMSGTVTALDLENAAADVTVSMFGRETSVTLPLTQLRK 173 >gi|300172658|ref|YP_003771823.1| transcription antitermination protein NusG [Leuconostoc gasicomitatum LMG 18811] gi|299887036|emb|CBL91004.1| Transcription antitermination protein NusG [Leuconostoc gasicomitatum LMG 18811] Length = 209 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++V YS E K ++ R G+ + I +P + V +++ G S F Sbjct: 23 EKSWFVVHTYSGYEHKVKANLESRTQTMGMSEQIFRILVPEQEVTTIQDGEAKTSVENDF 82 Query: 62 PGYVLIKA------VMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEA 112 PGYVL++ MTD+ ++ +++TP V GFLG+ G P+ + E++ +M ++ Sbjct: 83 PGYVLVEMATPHDYNMTDEAWYVVRNTPGVTGFLGSHGAGSKPNSLMPEEVDLLMKRM-G 141 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V R V + EVG+ V + GPF+ V VD EK + V +FGR TP EL + Sbjct: 142 MVTREVVDLAVEVGQTVKIITGPFSGMEATVTMVDVEKQTLEATVEVFGRETPTELDFAD 201 Query: 173 VEKIV 177 V+ ++ Sbjct: 202 VDTVL 206 >gi|325068005|ref|ZP_08126678.1| NusG antitermination factor [Actinomyces oris K20] Length = 281 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 32/208 (15%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56 M+ +WY++ YS E++ I R ++ + + T+P E V+ ++ +K Sbjct: 74 MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 133 Query: 57 ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 R PGYV ++ + D + TIKDTP V GF+G NP P+T E + Sbjct: 134 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 193 Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + V V FEVGE V V+DGPF S + + Sbjct: 194 EELAAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATIAEIHP 253 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E ++ V + +FGR TP EL++ QV KI Sbjct: 254 ETQKLQVLISLFGRDTPAELSFTQVAKI 281 >gi|242309997|ref|ZP_04809152.1| transcription antitermination protein nusG [Helicobacter pullorum MIT 98-5489] gi|239523294|gb|EEQ63160.1| transcription antitermination protein nusG [Helicobacter pullorum MIT 98-5489] Length = 176 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVKEHHLEERLTDIVVPTEDIIEVKNNKKKISERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV I+ + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P Sbjct: 61 YPGYVFIRVDLDTALWHTIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV Sbjct: 120 IIFEAGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176 >gi|213964871|ref|ZP_03393070.1| transcription antitermination protein NusG [Corynebacterium amycolatum SK46] gi|213952407|gb|EEB63790.1| transcription antitermination protein NusG [Corynebacterium amycolatum SK46] Length = 294 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 23/195 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63 WYI+Q YS E K ++ R G+D + E+ +P E V + +K +R+ PG Sbjct: 99 WYIIQCYSGYENKVKTNLEMRAQTMGVDEQIHEVIVPVEEVEERKDDGKKKIVKRKLLPG 158 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + ++DTP V F+G+ PS V E+ + Sbjct: 159 YVLVRMSLDDPSWSVVRDTPGVTSFVGSEGQPSKVKIREVAKFLMPKETITADAAEEAAN 218 Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ ++ +EVGE V + GPFAS + +D + R+ V IFG Sbjct: 219 ADGELAVAAAPQAEKKAVAIDYEVGESVTILSGPFASVAATISEIDPDTGRMKALVSIFG 278 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++VEK+ Sbjct: 279 RETPVELGIDEVEKL 293 >gi|224418583|ref|ZP_03656589.1| transcription antitermination protein NusG [Helicobacter canadensis MIT 98-5491] gi|253826866|ref|ZP_04869751.1| transcription antitermination protein NusG [Helicobacter canadensis MIT 98-5491] gi|313142111|ref|ZP_07804304.1| transcription antitermination protein nusg [Helicobacter canadensis MIT 98-5491] gi|253510272|gb|EES88931.1| transcription antitermination protein NusG [Helicobacter canadensis MIT 98-5491] gi|313131142|gb|EFR48759.1| transcription antitermination protein nusg [Helicobacter canadensis MIT 98-5491] Length = 176 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV IK + ++H I+ PKV F+G + P+P+++++I HI+ +V+ P Sbjct: 61 YPGYVFIKVDLDTALWHKIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V FE GE V + +GPFA+F G V+ D E ++ + V IFGR TP+E+ Y+QVEKIV Sbjct: 120 VIFETGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176 >gi|331001619|ref|ZP_08325142.1| transcription termination/antitermination factor NusG [Lachnospiraceae oral taxon 107 str. F0167] gi|330413340|gb|EGG92707.1| transcription termination/antitermination factor NusG [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 95/175 (54%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +W++ YS E K I + GL + E+T+P E ++ V+ G + +S+++ F Sbjct: 3 EAQWFVAHTYSGYENKVKVDIEKTIENRGLQDQILEVTVPMETILEVKNGVEKSSDKKLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI M D+ ++ +++T V GF+G G P P+T+ E+ + ++ V Sbjct: 63 PGYVLIHMYMNDETWYVVRNTRGVTGFVGPGSKPVPLTNDELVALGYSGDSTKPEAKLHV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V G + G++ V+E++ V + V +FGR T VEL + +V+K+ Sbjct: 123 DLKEGDMVTVISGAWKDTVGVITAVNEKRKTVSINVEMFGRETKVELEFTEVKKM 177 >gi|226942765|ref|YP_002797838.1| transcription termination/antitermination factor NusG [Azotobacter vinelandii DJ] gi|226717692|gb|ACO76863.1| transcription termination/antitermination factor NusG [Azotobacter vinelandii DJ] Length = 159 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLIERVKLAGMEDQFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 IKDTP+V+GF+G + P+P+TD E E I+ +V + RP FE GE V V DGPFA Sbjct: 61 IKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADSGDRPKPKTLFEPGEVVRVIDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEK 158 >gi|191639230|ref|YP_001988396.1| Transcription antitermination protein NusG [Lactobacillus casei BL23] gi|190713532|emb|CAQ67538.1| Transcription antitermination protein NusG [Lactobacillus casei BL23] Length = 184 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E K ++ R S +D + + +P E + G++ ++ F Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ + +++TP V GF+G+ G P+P+ E+ ++++ + + Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVANVLHSMG--MSTRH 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + V F+VGE V + DG F +G V VD+EK ++ V +F R EL ++QV+K+ Sbjct: 127 NDVEFDVGEPVTIIDGDFTGMHGKVTAVDKEKMKLKVVTEMFDREVTAELDFDQVDKL 184 >gi|167748127|ref|ZP_02420254.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662] gi|317472342|ref|ZP_07931669.1| transcription termination/antitermination factor NusG [Anaerostipes sp. 3_2_56FAA] gi|167652119|gb|EDR96248.1| hypothetical protein ANACAC_02871 [Anaerostipes caccae DSM 14662] gi|316900184|gb|EFV22171.1| transcription termination/antitermination factor NusG [Anaerostipes sp. 3_2_56FAA] Length = 182 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+V YS E K +I + L + E+ +P + V ++ G K ++ FPG Sbjct: 5 NWYVVHTYSGYENKVKANIEKTIENRKLQDQILEVRVPLQDVTELKNGVKKQVSKKMFPG 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS 119 YVLI VM D ++ +++T V GF+G G P P+T +E++ + V E ++ Sbjct: 65 YVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGISVGGTNEETPKKEKI 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ + V+ G + V V+E K V +EV +FGR T VE+ + ++K Sbjct: 125 DIDVEVGDIIVVTSGAWEGTTSAVTVVNEHKQTVTIEVEMFGRATSVEIDFLDIKK 180 >gi|311748526|ref|ZP_07722311.1| transcription termination/antitermination factor NusG [Algoriphagus sp. PR1] gi|126577042|gb|EAZ81290.1| transcription termination/antitermination factor NusG [Algoriphagus sp. PR1] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 7/181 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++V + EKK + +SR +D + E+ IPSE+V +R G+K ER FF Sbjct: 3 EHKWYVLRVVAGQEKKTKTYLDNEISRQEIDEFIPEVLIPSEKVYEMRNGKKRVRERNFF 62 Query: 62 PGYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEAAVQ 115 PGYVL+ A + + H I P VIGFLG+ + P P+ SE+ I+ +VE + Sbjct: 63 PGYVLVNADLSNGEANHVITSIPGVIGFLGSSQGGASKTPEPLRQSEVNRILGKVEEIDE 122 Query: 116 -RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F VGE V V DGPF+ F G ++ V ++K +++V V IFGR TPVEL + QVE Sbjct: 123 FAEKLDTPFIVGEAVKVMDGPFSGFTGTIEEVFDDKKKLNVMVKIFGRNTPVELNFIQVE 182 Query: 175 K 175 K Sbjct: 183 K 183 >gi|237753301|ref|ZP_04583781.1| transcription antitermination protein nusG [Helicobacter winghamensis ATCC BAA-430] gi|229375568|gb|EEO25659.1| transcription antitermination protein nusG [Helicobacter winghamensis ATCC BAA-430] Length = 176 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY +Q Y E+ I + L+ +T+I +P+E ++ V+ +K SER Sbjct: 1 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV +K + ++HTI+ PKV F+G + P+P+++++I HI+ +V+ P Sbjct: 61 YPGYVFVKVDLDTALWHTIQSLPKVSRFIGESKKPTPLSEADINHIIEKVQNRA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + FE GE V + +GPFA+F GIV+ D E ++ + V IFGR TP+E+ Y+QVEKIV Sbjct: 120 IIFEAGEVVRIIEGPFANFTGIVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV 176 >gi|254425360|ref|ZP_05039078.1| transcription termination/antitermination factor NusG [Synechococcus sp. PCC 7335] gi|196192849|gb|EDX87813.1| transcription termination/antitermination factor NusG [Synechococcus sp. PCC 7335] Length = 218 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 14/185 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 PRWY VQV S CEKK ++ R+ L +++ E+ IP V +RK + + E + F Sbjct: 34 PRWYAVQVASGCEKKVKLTLEQRVKTFDLSNVILEVEIPQTPAVKMRKDGSRHSIEEKVF 93 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQV 110 PGYVLI+ + D + +K+TP VI F+G + P P++ E++ I Q Sbjct: 94 PGYVLIRMALDDDAWQVVKNTPHVINFVGAEQRRAQGRGRGHVKPMPLSAGEVKRIFKQT 153 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + Q PV + G+++ V GPF F G V V E+S++ + IFGR TPVEL + Sbjct: 154 QE--QAPVVKIDMAAGDKITVLSGPFKDFEGEVVEVSPERSKLKALLSIFGRDTPVELEF 211 Query: 171 NQVEK 175 NQV+K Sbjct: 212 NQVKK 216 >gi|313900413|ref|ZP_07833906.1| transcription termination/antitermination factor NusG [Clostridium sp. HGF2] gi|312954475|gb|EFR36150.1| transcription termination/antitermination factor NusG [Clostridium sp. HGF2] Length = 183 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V Y+ E + E++ R+ GL + + + E+ + + G++V F Sbjct: 7 KQWYVVNTYAGHENRVKENLLRRVESMGLQDYLFRVIVAEEKEIEYKNGKEVEKTTNLFS 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ +MTD+ ++ +++TP V GF+ G G P PV + E+E I+ ++ + ++ Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMESILRRLGMSERKVQ- 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F VG+RV + G FA+ G V+ + E+ V ++FGR TP E+ Y ++EK+ Sbjct: 126 -IDFAVGDRVRILSGAFANVEGTVEELHEDSQTAVVLTILFGRETPTEIGYGELEKV 181 >gi|91200655|emb|CAJ73705.1| strongly similar to transcription antitermination protein NusG [Candidatus Kuenenia stuttgartiensis] Length = 182 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 112/182 (61%), Gaps = 6/182 (3%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W++++V SN E K +++ R+ G++ L+T + +PSE++ V+ G+K S+R+ Sbjct: 1 MPKEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKI 60 Query: 61 FPGYVLIKAVMTDK------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114 +PGY++++ + +K V+ TI++T F+G P P+T E+E +++ ++ Sbjct: 61 YPGYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKE 120 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +RP + + F GE+V + +GPF +++GIV+ V RV V + +FGR TPVEL Y QVE Sbjct: 121 ERPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180 Query: 175 KI 176 I Sbjct: 181 SI 182 >gi|329769657|ref|ZP_08261061.1| transcription termination/antitermination factor NusG [Gemella sanguinis M325] gi|328838412|gb|EGF88021.1| transcription termination/antitermination factor NusG [Gemella sanguinis M325] Length = 181 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY++ YS E K +++ R+ ++ + I +P E+ + +K R+ F Sbjct: 7 KEWYVIHTYSGYENKVKDNLEKRVESLNMEDKIFRIVVPEEKETIITPTGKKKEVNRKTF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL++ VMTD + +++TP V GF+G+ S + E I ++ V + Sbjct: 67 PGYVLVELVMTDDSWFVVRNTPGVTGFVGSHGGGSKPSPLLPEEINFILQQMGLSSVVDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E+G+ V V GPF +G V N+D + V + + GR T VEL +EK Sbjct: 127 DIELGDHVRVISGPFVDMDGKVVNIDTNNFKADVMIELMGRETKVELELYNIEK 180 >gi|320333435|ref|YP_004170146.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211] gi|319754724|gb|ADV66481.1| NusG antitermination factor [Deinococcus maricopensis DSM 21211] Length = 190 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 14/189 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58 M+ WY V Y E + +++ R + + ++ P+E V +++G +K +R Sbjct: 1 MSIEWYAVHTYVGQEDRVEDNLIKRARAYSMYGLKIFQVLQPTEEAVELKEGGKKETVKR 60 Query: 59 RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 + FPGYV ++ + D+ + ++ TP V GF+GT P P++ E++ ++ V Sbjct: 61 KMFPGYVFVQMDIEDEHSPGELGESWEVVRGTPGVTGFVGTTTRPVPLSPEEVQRLLASV 120 Query: 111 ----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 +A P V F+ G+ V V+ GPFA F+G+V V+ +++V V V IFGR TPV Sbjct: 121 GVAAKATEVAPRIKVNFKEGDMVRVTSGPFADFSGVVSEVNAAQAKVKVLVSIFGRETPV 180 Query: 167 ELAYNQVEK 175 EL ++QV + Sbjct: 181 ELDFSQVSR 189 >gi|326773946|ref|ZP_08233228.1| transcription termination/antitermination factor NusG [Actinomyces viscosus C505] gi|326636085|gb|EGE36989.1| transcription termination/antitermination factor NusG [Actinomyces viscosus C505] Length = 300 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 32/208 (15%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56 M+ +WY++ YS E++ I R ++ + + T+P E V+ ++ +K Sbjct: 93 MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 152 Query: 57 ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 R PGYV ++ + D + TIKDTP V GF+G NP P+T E + Sbjct: 153 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 212 Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + V V FEVGE V V+DGPF S + + Sbjct: 213 EEIAAKEAAAAEVTAPESGSGTQIAAGGQVFEVAFEVGESVIVTDGPFESLPATIAEILP 272 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E ++ V + +FGR TP EL++NQV KI Sbjct: 273 ETQKLQVLISLFGRDTPAELSFNQVAKI 300 >gi|325954358|ref|YP_004238018.1| NusG antitermination factor [Weeksella virosa DSM 16922] gi|323436976|gb|ADX67440.1| NusG antitermination factor [Weeksella virosa DSM 16922] Length = 180 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ S E K I L + ++ +P E+V +R G+K E+ FP Sbjct: 4 KKWYVVKTVSGQELKVKNYIENEAQYHKLTDYIGQVVVPMEKVFQIRNGKKYQKEKVHFP 63 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 GYV+I+A + +V H +K+ P VI FL G +P P+ SE+ ++ +V+ + Sbjct: 64 GYVMIEASLQGEVPHIVKNIPGVISFLSATKGGDPVPMRQSEVNRMLGKVDELADSIESN 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F+VGE + V DGPF+ F G ++ + E+K ++ V V+IFGR TP+EL + QVEKI Sbjct: 124 SIPFDVGETIKVIDGPFSGFTGSIEKIHEDKRKLEVMVLIFGRKTPLELNFGQVEKI 180 >gi|227832183|ref|YP_002833890.1| transcription antitermination protein [Corynebacterium aurimucosum ATCC 700975] gi|262183965|ref|ZP_06043386.1| transcription antitermination protein NusG [Corynebacterium aurimucosum ATCC 700975] gi|227453199|gb|ACP31952.1| transcription antitermination protein [Corynebacterium aurimucosum ATCC 700975] Length = 302 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 21/194 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+ + + G+K +R+ PG Sbjct: 108 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPVEQAIEKKDGKKKVVKRKLLPG 167 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++ + D + ++DTP V F+G N +PV ++ + Sbjct: 168 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKIRDVAKFLMPNDPTVSPEASAADS 227 Query: 109 ------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + + FEVGE V + GP AS + + +D E ++ V IFGR Sbjct: 228 EGEQVVAMPEKEAAKAYAHDFEVGEAVTILSGPLASVSATISEIDPETGKMQGLVSIFGR 287 Query: 163 VTPVELAYNQVEKI 176 TPVEL+ ++E+I Sbjct: 288 ETPVELSPTEIERI 301 >gi|158336005|ref|YP_001517179.1| transcription antitermination protein NusG [Acaryochloris marina MBIC11017] gi|158306246|gb|ABW27863.1| transcription termination/antitermination factor NusG [Acaryochloris marina MBIC11017] Length = 206 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV-NSERRFFP 62 WY VQV S CEKK ++ RL + + +I IP + VRK E + FP Sbjct: 24 HWYAVQVASGCEKKVKHNLEQRLQTLDVADRIVQIEIPQTPTIKVRKDGSRLTGEEKVFP 83 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ D+ + +K+TP VI F+G + P P++ SE+E I Q + Sbjct: 84 GYVLVRMILDDETWQVVKNTPNVINFVGAEQQRRYGRGRGHVKPMPLSPSEVERIFRQAQ 143 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 Q PV V VG+++ V +GPF F G V V E++++ + IFGR TPVEL +N Sbjct: 144 E--QEPVVKVDMSVGDKIQVLNGPFKDFEGEVIEVSLERNKLKALLSIFGRDTPVELEFN 201 Query: 172 QVEK 175 QV K Sbjct: 202 QVRK 205 >gi|107103787|ref|ZP_01367705.1| hypothetical protein PaerPA_01004858 [Pseudomonas aeruginosa PACS2] gi|313111429|ref|ZP_07797233.1| transcription antitermination protein NusG [Pseudomonas aeruginosa 39016] gi|310883735|gb|EFQ42329.1| transcription antitermination protein NusG [Pseudomonas aeruginosa 39016] Length = 159 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E + I+ +V + +P FE GE V V DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKPKTLFEPGETVRVIDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159 >gi|291516066|emb|CBK65276.1| transcription antitermination protein nusG [Alistipes shahii WAL 8301] Length = 186 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 7/180 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +P Sbjct: 6 KQWYVVRAIGGKEGKVKEYIEAEIRHNHLEDYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEA-AVQ 115 GYVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V+ Q Sbjct: 66 GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDELNAQ 125 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVEK Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVEK 185 >gi|313115119|ref|ZP_07800606.1| transcription termination/antitermination factor NusG [Faecalibacterium cf. prausnitzii KLE1255] gi|310622559|gb|EFQ06027.1| transcription termination/antitermination factor NusG [Faecalibacterium cf. prausnitzii KLE1255] Length = 177 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 6/171 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63 WY+V YS E K + + L L+ +I +P E V + + G++ E + FPG Sbjct: 10 WYVVHTYSGYENKVANDLQTMVENRHLQDLICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K VM D ++ +++T GF+G P P++ E+E + + +V F Sbjct: 70 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLSAEEVEKM-----GVEKAAPLAVDF 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE Sbjct: 125 NVGDTVQITAGPLEGFMGLVEEIDTENFKVKLKVNMFGRETPAEVEIGQVE 175 >gi|282858393|ref|ZP_06267573.1| transcription termination/antitermination factor NusG [Prevotella bivia JCVIHMP010] gi|282588841|gb|EFB93966.1| transcription termination/antitermination factor NusG [Prevotella bivia JCVIHMP010] Length = 181 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 +WY+++ S E K E I +L + L V E+ +P E+ S+R G++V E+ Sbjct: 5 EKKWYVLRAISGKEAKVKEYIDAQLRLNTKLAERVFEVLLPMEKHASLRNGKRVIKEKLS 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++A MT + T++ P V+GFLG PSP+ ++I ++ VE + Sbjct: 65 LPGYVLVQANMTPDIASTLRFMPNVLGFLGGTSEPSPIRQADINRLLGNVEETEVNGMQD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V +GPFA F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 VPYSVGESVKVIEGPFAGFHGVIEEINTEKHKLKVMVMIFGRQNPLELSFMQVSK 179 >gi|284928831|ref|YP_003421353.1| transcription antitermination protein NusG [cyanobacterium UCYN-A] gi|284809290|gb|ADB94995.1| transcription antitermination protein nusG [cyanobacterium UCYN-A] Length = 206 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S CEK+ ++ R+ + +I IP + VRK + E + FP Sbjct: 23 RWYAVQVASGCEKRVKSNLEQRVQTLDTAGNILQIQIPKAPTIKVRKDGSRQQGEEKVFP 82 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GY+L+K +M D + IK TP VI F+G+ + P P++ SE+E I Q E Sbjct: 83 GYILVKMIMDDDTWLVIKSTPNVINFVGSEQRRASGRGRGHVKPLPLSPSEVERIFRQTE 142 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + P+ + EVG+++ V GPF F G V V E++++ + IFGR TPVEL +N Sbjct: 143 RS--EPIIKIDMEVGDKIVVLSGPFKDFEGEVVEVSSERNKLRALLSIFGRDTPVELEFN 200 Query: 172 QVEK 175 QVEK Sbjct: 201 QVEK 204 >gi|318040711|ref|ZP_07972667.1| transcription antitermination protein NusG [Synechococcus sp. CB0101] Length = 226 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62 RWY VQV S+CEKK ++ R G+D+ + EI IP V ++K +E + FP Sbjct: 43 RWYAVQVASSCEKKVKATLEQRAVTLGVDNRILEIEIPQTPAVKLKKDGSRTSTEEKVFP 102 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 103 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 162 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++PV V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 163 E--KKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 220 Query: 172 QVEK 175 Q+ K Sbjct: 221 QISK 224 >gi|226226256|ref|YP_002760362.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca T-27] gi|226089447|dbj|BAH37892.1| transcription antitermination protein NusG [Gemmatimonas aurantiaca T-27] Length = 181 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSR---SGLDHLVTEITIPSERVVSVRKGRKVNSER 58 RWY +Q S E K I ++ D L+ + +P+++VV ++ G+KV ER Sbjct: 3 EHRWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVER 62 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP- 117 + FPGYVL++ V + H I VI F+G ++P P+ D E+ ++ Q + A + P Sbjct: 63 KIFPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETPV 122 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F VG+ V +++GPFA FNG V+ + +K +V V V +FGR T VEL Y Q+ Sbjct: 123 REEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179 >gi|260592783|ref|ZP_05858241.1| transcription termination/antitermination factor NusG [Prevotella veroralis F0319] gi|260535314|gb|EEX17931.1| transcription termination/antitermination factor NusG [Prevotella veroralis F0319] Length = 181 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 68/175 (38%), Positives = 105/175 (60%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 +WY+++ S E K E I +L L V E+ +P E+ ++R G++V E+ Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRQNDKLAERVFEVLLPMEKHATLRNGKRVVKEKLS 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V Sbjct: 65 LPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEETELDEVQD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +EVGE V V+DGPF+ F+G+++ ++ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 VPYEVGETVKVTDGPFSGFHGVIEEMNAEKHKLKVMVMIFGRQNPLELSFMQVAK 179 >gi|305433028|ref|ZP_07402184.1| transcription termination/antitermination factor NusG [Campylobacter coli JV20] gi|304443729|gb|EFM36386.1| transcription termination/antitermination factor NusG [Campylobacter coli JV20] Length = 184 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER + Sbjct: 10 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 69 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P + Sbjct: 70 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+ Sbjct: 129 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 184 >gi|295099392|emb|CBK88481.1| transcription antitermination protein nusG [Eubacterium cylindroides T2-87] Length = 181 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V Y+ E + E++ R+ GL+ + +I + E+ + + G+ V + F Sbjct: 6 KEWYVVNTYAGQENRVKENLERRVKTMGLEDSLFQIVVAEEKEIEYKNGKPVEKTKNLFS 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ +MTD+ ++ +++TP V GF+G+ P PV+ EI+ ++ ++ Q Sbjct: 66 GYVLVQMIMTDEAWYVVRNTPGVTGFIGSSGKGAKPFPVSQEEIDSVLRRLGR--QDMSV 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+ V + +G F + G V+ +D++K V +++FGR TP ++ Y ++K+ Sbjct: 124 QVDFEVGDTVEILNGAFKNSEGTVEKMDDDKKEATVLLILFGRETPTDIPYMDLKKV 180 >gi|332178503|gb|AEE14192.1| NusG antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 179 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 7/181 (3%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 MT +WY++ SN EK+ E+I R R GL+ +T + IP E+ V + +K Sbjct: 1 MTKANPNLKWYVITTLSNYEKRVEEAILVRAQREGLEDKITRVLIPVEKEVKMIGHQKKE 60 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 S ++ FPGYVL++ + D ++ ++ TP V GF+ + + P P++ E+E IM + A Sbjct: 61 SSKKVFPGYVLVEMDLDDATWNLVRTTPGVTGFISSKKKPLPLSPEEVEKIM--MYAKSD 118 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +PV V FE G+ V V+ GPFA G++ + EK V + + +FGR TP E+A Q+EK Sbjct: 119 KPVIRVEFEKGQVVRVTAGPFAEQTGVIDEIFPEKGTVRLVINLFGRDTPAEIALTQIEK 178 Query: 176 I 176 + Sbjct: 179 V 179 >gi|57504724|ref|ZP_00370778.1| transcription termination/antitermination factor NusG [Campylobacter coli RM2228] gi|57019380|gb|EAL56078.1| transcription termination/antitermination factor NusG [Campylobacter coli RM2228] Length = 177 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER + Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P + Sbjct: 63 SGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+ Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177 >gi|1709421|sp|P52852|NUSG_STRGB RecName: Full=Transcription antitermination protein nusG gi|1213238|emb|CAA65165.1| transcription terminator [Streptomyces galbus] Length = 309 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 13/183 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ Y+ E + ++ R ++ + + +P E VV ++ G + ++ PGY Sbjct: 127 WYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGY 186 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM------------NQVEA 112 VL++ +T++ + +++TP V GF+G +P P+T EI ++ + Sbjct: 187 VLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPAP 246 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + V + FEVG V V+DGPFA+ + + + +V V IFG TPVEL+++Q Sbjct: 247 QRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSFDQ 305 Query: 173 VEK 175 ++K Sbjct: 306 IQK 308 >gi|255324702|ref|ZP_05365816.1| transcription antitermination protein NusG [Corynebacterium tuberculostearicum SK141] gi|255298177|gb|EET77480.1| transcription antitermination protein NusG [Corynebacterium tuberculostearicum SK141] Length = 306 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 22/195 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+V+ + G+K +R+ PG Sbjct: 111 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFEVVVPIEQVLENKDGKKKIVKRKLLPG 170 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN--------------- 108 YVL++A + D + I++TP V F+G N +PV ++ + Sbjct: 171 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPSTKGDAAPNE 230 Query: 109 -------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + FEVGE V + GP A+ + + +D E ++ V IFG Sbjct: 231 AEGEQVVAMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 290 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL+ ++E+I Sbjct: 291 RETPVELSPTEIERI 305 >gi|124024464|ref|YP_001018771.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9303] gi|123964750|gb|ABM79506.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9303] Length = 241 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 58 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 117 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E++ I + Sbjct: 118 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 177 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 178 E--KKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 235 Query: 172 QVEK 175 Q+ K Sbjct: 236 QINK 239 >gi|160941939|ref|ZP_02089264.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC BAA-613] gi|158435146|gb|EDP12913.1| hypothetical protein CLOBOL_06833 [Clostridium bolteae ATCC BAA-613] Length = 172 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P VV ++ G + ++++ F Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ + + V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASL-----GFHREEDVLV 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+K+ Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKKM 172 >gi|327399535|ref|YP_004340404.1| NusG antitermination factor [Hippea maritima DSM 10411] gi|327182164|gb|AEA34345.1| NusG antitermination factor [Hippea maritima DSM 10411] Length = 179 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF-FP 62 +WY + E K + +L GL+ V EI +P E V+ ++K K ++ +P Sbjct: 5 KWYAIHTQVGYEDKVKVMLQNKLKEEGLEGEVEEIFVPFEEVIEIKKNNKKEKVKKCLYP 64 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV +KA M+DK+Y+ +K V GF+G P P+ + EI IM +VE++ + P SV Sbjct: 65 SYVFVKARMSDKLYNLVKRMSFVSGFVGYKNEPLPMDEKEIRDIMQRVESSKEAPRLSVS 124 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE GE+V V DGPFA+F G + VD +K R+ + + IFGR TPVEL YNQVEK+ Sbjct: 125 FEPGEQVRVLDGPFANFTGTIDEVDVDKGRLRILISIFGRSTPVELNYNQVEKV 178 >gi|15807041|ref|NP_295770.1| transcription antitermination protein NusG [Deinococcus radiodurans R1] gi|18203424|sp|Q9RSS6|NUSG_DEIRA RecName: Full=Transcription antitermination protein nusG gi|6459839|gb|AAF11597.1|AE002041_1 transcription antitermination protein NusG [Deinococcus radiodurans R1] Length = 190 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 15/190 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKG-RKVNSER 58 M+ WY V Y E + + + R R G+ + ++ P E V +++G +KVN +R Sbjct: 1 MSIEWYAVHTYVGQEDRVQDQLMDRARRLGMYRTKIFQVLQPEEEAVEIQEGGKKVNVKR 60 Query: 59 RFFPGYVLIKAVMTDKV--------YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 + FPGYV ++ + D + ++ T V GF+GT P P++ E++ ++ V Sbjct: 61 KLFPGYVFVQMDVEDDDAPGELGESWEVVRGTSGVTGFVGTATRPVPLSPEEVQRLLTSV 120 Query: 111 -----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + P V + G+ V V+ GPFA F+G+V V+ +++V V V IFGR TP Sbjct: 121 GVAAQPVVEEAPRIKVDLKAGDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETP 180 Query: 166 VELAYNQVEK 175 VEL ++QV K Sbjct: 181 VELDFSQVAK 190 >gi|116491404|ref|YP_810948.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1] gi|118586217|ref|ZP_01543682.1| transcriptional antitermination factor [Oenococcus oeni ATCC BAA-1163] gi|290890972|ref|ZP_06554036.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429] gi|116092129|gb|ABJ57283.1| transcription antitermination protein nusG [Oenococcus oeni PSU-1] gi|118433346|gb|EAV40047.1| transcriptional antitermination factor [Oenococcus oeni ATCC BAA-1163] gi|290479371|gb|EFD88031.1| hypothetical protein AWRIB429_1426 [Oenococcus oeni AWRIB429] Length = 185 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY+V YS E + +++ R G+ + ++ +P + F Sbjct: 8 KDWYVVHTYSGYENRVKQNLEQRRESMGMTDFIFQVIVPENEKIKTGPNGELKKVVENDF 67 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ VMTD+ ++ +++TP V GFLG+ G P+PVT EI+ IM+++ ++R V Sbjct: 68 PGYVLVEMVMTDQSWYVVRNTPGVTGFLGSHGQGSKPNPVTKDEIDRIMHRM-GLIERKV 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +VGE V + G G + +D EK V V V +FGR T E+ +N ++KI Sbjct: 127 DDLNVKVGETVSIIGGAMNGMEGKITAIDREKQEVQVLVDMFGRETETEVPFNDIDKI 184 >gi|308178151|ref|YP_003917557.1| transcription antitermination protein NusG [Arthrobacter arilaitensis Re117] gi|307745614|emb|CBT76586.1| transcription antitermination protein NusG [Arthrobacter arilaitensis Re117] Length = 275 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ Y+ E + ++ R+ +D + +I +P E VV V+ ++ R PGY Sbjct: 91 WFVIHTYAGYENRVKVNLETRIQTQDMDEFIFDIQVPMEEVVEVKNTQRKIVRRVRIPGY 150 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSS--- 120 VL++ +TD + ++ TP V GF+G +P+P++ E+ ++ + V++P +S Sbjct: 151 VLVRMELTDASWGVVRHTPGVTGFVGNAHDPNPLSLDEVFSMLEHTIVDPVEQPSASKPG 210 Query: 121 --------VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 V FEVGE V V+DGPF + + + + +++ V V IF R TPV L +NQ Sbjct: 211 RAPITEVTVDFEVGESVIVNDGPFETMPATISEIKLDAAQLVVLVSIFERETPVTLNFNQ 270 Query: 173 VEKI 176 V KI Sbjct: 271 VTKI 274 >gi|57237527|ref|YP_178541.1| transcription antitermination protein NusG [Campylobacter jejuni RM1221] gi|86148936|ref|ZP_01067168.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151847|ref|ZP_01070061.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 260.94] gi|86153839|ref|ZP_01072042.1| transcription termination/antitermination factor NusG [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597087|ref|ZP_01100323.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 84-25] gi|121613601|ref|YP_001000180.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 81-176] gi|148925852|ref|ZP_01809539.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414766|ref|YP_001482022.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 81116] gi|167005138|ref|ZP_02270896.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355346|ref|ZP_03222117.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562128|ref|YP_002343907.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955895|ref|ZP_06373385.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 1336] gi|315124017|ref|YP_004066021.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|14423820|sp|Q9PI36|NUSG_CAMJE RecName: Full=Transcription antitermination protein nusG gi|57166331|gb|AAW35110.1| transcription antitermination protein NusG [Campylobacter jejuni RM1221] gi|85840294|gb|EAQ57551.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841476|gb|EAQ58724.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 260.94] gi|85842800|gb|EAQ60012.1| transcription termination/antitermination factor NusG [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190776|gb|EAQ94749.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 84-25] gi|112359834|emb|CAL34621.1| transcription antitermination protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|121504265|gb|EAQ73248.2| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 81-176] gi|145844838|gb|EDK21942.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385730|gb|ABV52045.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346580|gb|EDZ33212.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792555|gb|EFC31334.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni 1336] gi|284925740|gb|ADC28092.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni IA3902] gi|307747405|gb|ADN90675.1| Transcription antitermination protein nusG [Campylobacter jejuni subsp. jejuni M1] gi|315017739|gb|ADT65832.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057893|gb|ADT72222.1| Transcription antitermination protein NusG [Campylobacter jejuni subsp. jejuni S3] gi|315928198|gb|EFV07515.1| transcription termination/antitermination factor NusG [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929765|gb|EFV08935.1| transcription termination/antitermination factor NusG [Campylobacter jejuni subsp. jejuni 305] gi|315931086|gb|EFV10060.1| transcription termination/antitermination factor NusG [Campylobacter jejuni subsp. jejuni 327] Length = 177 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER + Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P + Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+ Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177 >gi|240143819|ref|ZP_04742420.1| transcription termination/antitermination factor NusG [Roseburia intestinalis L1-82] gi|257204193|gb|EEV02478.1| transcription termination/antitermination factor NusG [Roseburia intestinalis L1-82] gi|291534886|emb|CBL07998.1| transcription antitermination protein nusG [Roseburia intestinalis M50/1] gi|291539447|emb|CBL12558.1| transcription antitermination protein nusG [Roseburia intestinalis XB6B4] Length = 172 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 6/173 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L+ + E+ +P + VV ++ G K + ++ F Sbjct: 3 EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVEMKNGAKKSVSKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+TD E++ +++ V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMK------PLGIKKENIEV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V+ G + G+++ ++ K V + V +FGR TPVE+++ V+ Sbjct: 117 DFTEGDTVVVTGGVWKDTIGVIQAMNHGKQSVTINVELFGRETPVEISFADVK 169 >gi|311112018|ref|YP_003983240.1| transcription termination/antitermination factor NusG [Rothia dentocariosa ATCC 17931] gi|310943512|gb|ADP39806.1| transcription termination/antitermination factor NusG [Rothia dentocariosa ATCC 17931] Length = 242 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K I R+ + + E+ +P E VV + K R PGY Sbjct: 62 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEYKNTVKKTIRRVRVPGY 121 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 122 VLVRMDLTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEEQQSKGLPTP 181 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +PV + VGE V V GPF + + + E +V + +F R TPV L +NQ+EK Sbjct: 182 QPVVESDYTVGENVRVKSGPFEGMDATISEIKPESQQVVTLISVFERDTPVTLEFNQIEK 241 Query: 176 I 176 I Sbjct: 242 I 242 >gi|313124310|ref|YP_004034569.1| transcription antitermination protein nusg [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280873|gb|ADQ61592.1| Transcription antitermination protein nusG [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685659|gb|EGD27741.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 194 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P E + +G+K + FP Sbjct: 17 KQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEVNEKVFP 76 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--SEIEHIMNQVEAAVQRPVSS 120 GYVL++ VMTD+ + +++TP V GF+G+ S + E + Q++ Sbjct: 77 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGEATEKVD 136 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +EVGE V ++ G F G + + ++K ++ + + +FG EL ++QV+K+ Sbjct: 137 YDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHAITAELGFDQVKKM 192 >gi|302384847|ref|YP_003820669.1| NusG antitermination factor [Clostridium saccharolyticum WM1] gi|302195475|gb|ADL03046.1| NusG antitermination factor [Clostridium saccharolyticum WM1] Length = 171 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P E V+ ++ G + ++++ F Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPLESVIELKNGVEKKADKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ E+E + + V Sbjct: 63 PGYVLIHMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMEKL------GFKNEEIIV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G+ V V+ G + G +K+++E K + + V +FGR TPVEL +++V+K+ Sbjct: 117 GFEEGDTVVVTSGAWKDTVGAIKSINEGKKTITMSVEMFGRETPVELNFSEVKKM 171 >gi|160916271|ref|ZP_02078478.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991] gi|158431995|gb|EDP10284.1| hypothetical protein EUBDOL_02298 [Eubacterium dolichum DSM 3991] Length = 183 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 5/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V Y+ E + E++ R+ GL + I + E+ + + G++V + F Sbjct: 7 KQWYVVNTYAGHENRVRENLERRIETMGLQDKLFRIIVAEEKEIEYKNGKEVEKTKNLFS 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ +MTD+ ++ +++TP V GF+ G G P PV + E+E+I+ ++ + ++ Sbjct: 67 GYLFVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVAEEEMENILRRLGMSERKVQ- 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FEVG+RV + G FA+ G V+ + +++ V ++FGR TP E+ Y +EK+ Sbjct: 126 -VDFEVGDRVRILSGAFANVEGTVEELHDDEQTAVVLTILFGRETPTEIPYGDLEKV 181 >gi|283954236|ref|ZP_06371760.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni 414] gi|283794254|gb|EFC32999.1| putative transcription antitermination protein [Campylobacter jejuni subsp. jejuni 414] Length = 177 Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q Y+ E +I +G++ + EI +P+E V+ + G++ SER + Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLAKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P + Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVHNRA-APKPKI 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V + +GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+ Sbjct: 122 SFEEGENVRIIEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177 >gi|225376339|ref|ZP_03753560.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM 16841] gi|225211715|gb|EEG94069.1| hypothetical protein ROSEINA2194_01980 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 6/173 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L+ + E+ +P + VV ++ G ++ F Sbjct: 9 EAHWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPMQDVVELKNGANKTVSKKMF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+TD E++ ++ V Sbjct: 69 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTDMEMK------PLGIKTENVEV 122 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V G + G++++++ K V + V +FGR TPVE+++ ++ Sbjct: 123 DFAEGDTVTVIGGVWKDTVGVIQSMNHSKQIVTINVELFGRETPVEISFADIK 175 >gi|153951948|ref|YP_001398490.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. doylei 269.97] gi|152939394|gb|ABS44135.1| transcription antitermination protein NusG [Campylobacter jejuni subsp. doylei 269.97] Length = 177 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY +Q Y+ E +I + +G++ + EI +P+E V+ + G++ SER + Sbjct: 3 THKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTEDVIEFKNGKEKISERSLY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G + P+P+T+ +I I+ +V P + Sbjct: 63 SGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEKDINLILEKVYNRA-APKPKI 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F IV+ D + + + V IFGR TPVE+ Y+QVEKI+ Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKII 177 >gi|169824235|ref|YP_001691846.1| transcription antiterminator [Finegoldia magna ATCC 29328] gi|302380892|ref|ZP_07269354.1| transcription termination/antitermination factor NusG [Finegoldia magna ACS-171-V-Col3] gi|303234923|ref|ZP_07321548.1| transcription termination/antitermination factor NusG [Finegoldia magna BVS033A4] gi|167831040|dbj|BAG07956.1| transcription antiterminator [Finegoldia magna ATCC 29328] gi|302311270|gb|EFK93289.1| transcription termination/antitermination factor NusG [Finegoldia magna ACS-171-V-Col3] gi|302494041|gb|EFL53822.1| transcription termination/antitermination factor NusG [Finegoldia magna BVS033A4] Length = 193 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 3/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ + Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKE---IDV 140 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI Sbjct: 141 NVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193 >gi|313496807|gb|ADR58173.1| NusG [Pseudomonas putida BIRD-1] Length = 159 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E E I+ +V +P FE GE V V DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVIDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 DFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEKV 159 >gi|37520399|ref|NP_923776.1| transcription antitermination protein NusG [Gloeobacter violaceus PCC 7421] gi|35211392|dbj|BAC88771.1| transcription antitermination protein [Gloeobacter violaceus PCC 7421] Length = 205 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 10/185 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRF 60 P WY VQV S CEKK ++ R+ + + ++ IP + V +R+ S + Sbjct: 19 EPHWYFVQVASGCEKKVKTNLEQRIQTMEMSERILKVEIPERQAVRIRQEGSRTASAEKI 78 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---------IMNQVE 111 FPGYVLI VM D+ + +K+TP VI F+GT E Sbjct: 79 FPGYVLINMVMDDESWQVVKNTPNVINFVGTEERRRYGRGRGHVTPRPLGSAEVNRIFRA 138 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 A + PV V E G ++ V+ GPF FNG V V+ E+ + + IFGR TPVEL +N Sbjct: 139 AEQEEPVIKVDLEPGHKIEVTAGPFQDFNGEVVEVNPERGTLKALISIFGRDTPVELGFN 198 Query: 172 QVEKI 176 QV ++ Sbjct: 199 QVRRL 203 >gi|34540216|ref|NP_904695.1| transcription antitermination protein NusG [Porphyromonas gingivalis W83] gi|188995440|ref|YP_001929692.1| putative transcription antitermination protein [Porphyromonas gingivalis ATCC 33277] gi|34396528|gb|AAQ65594.1| transcription antitermination protein NusG [Porphyromonas gingivalis W83] gi|188595120|dbj|BAG34095.1| putative transcription antitermination protein [Porphyromonas gingivalis ATCC 33277] Length = 179 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 2/175 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 ++Y+++ S E K E + + S L + + ++ IP+E+V++ R G++V ER + Sbjct: 5 EKKFYVLRAISGKENKVREYLEAEMKHSDLGNYLFQVLIPTEKVMTQRAGKRVVKERPYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSS 120 PGYVL++AV+ +V H ++ TP VIGFLG P+P+ SE+ I+ +V+ + Sbjct: 65 PGYVLVEAVLVGEVEHRLRSTPNVIGFLG-DGRPAPLHPSEVSRILGKVDQLDSEDEEYE 123 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F VGE V VSDG FA F+ IV+ V+ +K ++ V V IFGR T +EL+Y QVEK Sbjct: 124 LSFMVGETVKVSDGAFAGFDAIVEEVNPDKKKLKVMVKIFGRKTALELSYVQVEK 178 >gi|224542348|ref|ZP_03682887.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM 15897] gi|224524730|gb|EEF93835.1| hypothetical protein CATMIT_01527 [Catenibacterium mitsuokai DSM 15897] Length = 199 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K E++ R+ GL +++ I IP ++ G+KVN FPG Sbjct: 24 QWYVVNTYSGHENKVKENLEKRVESMGLQNILFNIVIPEHVETEIKNGKKVNKTVNMFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 YVL++ +MTD+ ++ +++TP V GF+ G G P PV E++ I+ + +Q Sbjct: 84 YVLVEMIMTDEAWYIVRNTPGVTGFIGSSGGGAKPFPVNKRELDPILKSMG--IQTTAVE 141 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F G+ V V GPFAS +G V+++D+EK V V G +TP+++ Q++KI Sbjct: 142 VDFVEGDYVEVLAGPFASKSGKVESIDKEKETATVLVDFLGNLTPIDMELIQLKKI 197 >gi|238922785|ref|YP_002936298.1| transcription antitermination protein NusG [Eubacterium rectale ATCC 33656] gi|238874457|gb|ACR74164.1| transcription antitermination protein NusG [Eubacterium rectale ATCC 33656] gi|291523705|emb|CBK89292.1| transcription antitermination protein nusG [Eubacterium rectale DSM 17629] gi|291528833|emb|CBK94419.1| transcription antitermination protein nusG [Eubacterium rectale M104/1] Length = 172 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K +I + L+ + E+ +P E V V+ G + ++ F Sbjct: 3 EANWYVVHTYSGYENKVKANIDKTIENRHLEDQILEVRVPLEDVTEVKNGVRKQVSKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI +M D ++ +++T V GF+G G P P+T++E+ + + E V V Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEMRPLGIKTENVV------V 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+ + V G + G++ ++ K V + V +FGR TPVE+++ V+K Sbjct: 117 DFAEGDMIVVIGGVWKDTVGVITAMNYHKQTVTINVELFGRETPVEVSFADVKK 170 >gi|330721677|gb|EGG99685.1| Transcription antitermination protein NusG [gamma proteobacterium IMCC2047] Length = 159 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + ++ R+ ++ E+ +P+E VV +R G+K SER+F+PGYVL+ M D +H Sbjct: 1 MRALLERIKLHDMEDKFGEVLVPTEEVVEMRGGQKRKSERKFYPGYVLVNMEMDDASWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 + TP+V+GF+G + P+P+T+ E + I+ +VE V++P FE GE V V DGPFA Sbjct: 61 VNSTPRVMGFIGGTADKPAPITEREADAILQRVEQGVEQPRPKTLFEPGEMVRVIDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+G+V+ V+ K+R+ V V IFGR TPVEL ++QVEK Sbjct: 121 DFSGVVEEVNYPKNRLQVAVTIFGRSTPVELGFDQVEK 158 >gi|281425130|ref|ZP_06256043.1| transcription termination/antitermination factor NusG [Prevotella oris F0302] gi|299141115|ref|ZP_07034252.1| transcription termination/antitermination factor NusG [Prevotella oris C735] gi|281400722|gb|EFB31553.1| transcription termination/antitermination factor NusG [Prevotella oris F0302] gi|298577075|gb|EFI48944.1| transcription termination/antitermination factor NusG [Prevotella oris C735] Length = 181 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E K E I L + L V+++ IP E+ S+R G++V E+ P Sbjct: 7 KWYVLRAVSGKEAKLKEYIEAELKHNELLSTHVSQVLIPVEKHASLRNGKRVVKEKISLP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ ++A + V HT++ P +GFLG + PSPV SEI ++ E + Sbjct: 67 GYIFVEANLVGDVAHTLRFMPNCLGFLGGLDEPSPVPQSEINRMLGTAEVTEIEDTVDIP 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 127 YVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELSFMQVEK 179 >gi|297587475|ref|ZP_06946119.1| transcription termination/antitermination factor NusG [Finegoldia magna ATCC 53516] gi|297574164|gb|EFH92884.1| transcription termination/antitermination factor NusG [Finegoldia magna ATCC 53516] Length = 193 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 3/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + G + E+ +P+E VS G K ER+ FPG Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV +K +TD ++ +++T V GF+G P V++ EI+ + ++ ++ + Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKE---IDV 140 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G+ V + G F+ GI++ ++ EK+ V + +FGR T VE++++ +EKI Sbjct: 141 NIGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193 >gi|313206995|ref|YP_004046172.1| transcription antitermination protein nusg [Riemerella anatipestifer DSM 15868] gi|312446311|gb|ADQ82666.1| transcription antitermination protein nusG [Riemerella anatipestifer DSM 15868] gi|315024071|gb|EFT37073.1| Transcription antitermination protein NusG [Riemerella anatipestifer RA-YM] gi|325335571|gb|ADZ11845.1| Transcription antiterminator [Riemerella anatipestifer RA-GD] Length = 180 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K I + R L+ V++I IP E+ + +R G+KV E+ ++ Sbjct: 3 ELKWYVLKAVSGQENKVKSYIENEIQRFKLEDFVSQIVIPMEKTIQMRNGKKVQKEKPYY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPV 118 PGY++++A + +V H IK+ P VI FL G +P P+ SE+ ++ +++ Q Sbjct: 63 PGYLMVEANLKGEVPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSQFATD 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + VGE V V DGPF FNG ++ + E+K ++ V V+IFGR TP+EL Y QVEKI Sbjct: 123 VDIPYVVGESVKVIDGPFNGFNGTIEKIHEDKKKLEVMVLIFGRKTPLELNYMQVEKI 180 >gi|167768207|ref|ZP_02440260.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1] gi|317499074|ref|ZP_07957354.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 5_1_63FAA] gi|167709731|gb|EDS20310.1| hypothetical protein CLOSS21_02763 [Clostridium sp. SS2/1] gi|291560226|emb|CBL39026.1| transcription antitermination protein nusG [butyrate-producing bacterium SSC/2] gi|316893650|gb|EFV15852.1| transcription termination/antitermination factor NusG [Lachnospiraceae bacterium 5_1_63FAA] Length = 181 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 4/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+ +P E VV +R G K R+ F Sbjct: 3 EANWYVVHTYSGYENKVKVDIEKTIENRKLQDEILEVRVPLEDVVEMRNGVKKQVSRKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRP 117 PGYVLI +M D ++ +++T V GF+G G P P+T +E++ + Q+ + R Sbjct: 63 PGYVLIHMIMNDDTWYVVRNTRGVTGFVGPGSKPVPLTPAEMKPLGIQIGGEQQETPARE 122 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG+ + V+ G + V ++E K V +EV +FGR T VE+ + ++K Sbjct: 123 KIELDIEVGDMIVVTSGAWEGTTSAVTAINESKQTVTIEVEMFGRATSVEIDFLDIKK 180 >gi|282857085|ref|ZP_06266331.1| transcription termination/antitermination factor NusG [Pyramidobacter piscolens W5455] gi|282585020|gb|EFB90342.1| transcription termination/antitermination factor NusG [Pyramidobacter piscolens W5455] Length = 181 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ VQ YS E K ++ R++ G+++ + + +P+E V V+ G+ + FP Sbjct: 6 HEWFTVQTYSGYENKVKANLDQRIASMGMENKIFRVLVPTEERVVVKDGKSRRISHKLFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-- 120 YVL++ +M ++ ++ ++ TP V GF+G G +P P+TDSEI+ I+ ++ P Sbjct: 66 SYVLVEMIMDEQSWYVVRHTPGVTGFIGAGNHPLPITDSEIDEILVKIGEKEAAPAPKVE 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + E+G+RV V+ GP G V + K +V +FG T +E+ Y ++EK+ Sbjct: 126 IDCEIGDRVRVATGPLTGMEGPVTEISPGKGKVKFSANVFGHDTEIEMDYAELEKL 181 >gi|313677108|ref|YP_004055104.1| transcription antitermination protein nusg [Marivirga tractuosa DSM 4126] gi|312943806|gb|ADR22996.1| transcription antitermination protein nusG [Marivirga tractuosa DSM 4126] Length = 183 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 5/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++V S EKK + ++R ++ + +I IP+E+V +R G+K E+ FFPG Sbjct: 5 KWYVLRVISGQEKKIKSYLENEIARQKIEDFIPQILIPTEKVYEMRNGKKRVREKNFFPG 64 Query: 64 YVLIKAVMTD-KVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQ-RPV 118 YV + A ++ + +H I P VIGFLG P P+ +E+ I+ +V+ + Sbjct: 65 YVFVSADISHGEAHHVITSIPGVIGFLGGQGDEKEPVPLRQNEVNRILGKVDETEEMDEK 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S + VGE V V DGPF+ F G V+ V EE+ +++V V IFGR TPVEL Y QVEK Sbjct: 125 LSTPYIVGESVKVMDGPFSGFTGSVEEVFEERKKLNVMVKIFGRNTPVELNYMQVEK 181 >gi|116071969|ref|ZP_01469237.1| transcription antitermination protein NusG [Synechococcus sp. BL107] gi|116065592|gb|EAU71350.1| transcription antitermination protein NusG [Synechococcus sp. BL107] Length = 222 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP + ++K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|330505219|ref|YP_004382088.1| transcription antitermination protein NusG [Pseudomonas mendocina NK-01] gi|328919505|gb|AEB60336.1| transcription antitermination protein NusG [Pseudomonas mendocina NK-01] Length = 159 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLIERVKLAGMEDDFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEATWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 IKDTP+V+GF+G + P+P+T+ E E I+ +V + +P FE GE V V DGPFA Sbjct: 61 IKDTPRVMGFIGGTADKPAPITEKEAEAILRRVADSGDKPKPKTLFEPGEMVRVVDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+V+ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 DFGGVVEEVNYEKSRIQVAVTIFGRSTPVELEFSQVEK 158 >gi|239623239|ref|ZP_04666270.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522205|gb|EEQ62071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V YS E K I + L + E+++P VV ++ G + ++++ F Sbjct: 3 EAHWYVVHTYSGYENKVKVDIEKTIENRNLQDQILEVSVPMLPVVELKNGVEKKADKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLI VM D ++ +++T V GF+G G P P+T+ E+ + + + V Sbjct: 63 PGYVLINMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEMASLGFR-----REEDVLV 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V G + G +K +++ K + + V +FGR TPVEL + +V+++ Sbjct: 118 DFEVGDMVVVISGAWKDTVGAIKAINDSKKTITMHVEMFGRETPVELGFAEVKRM 172 >gi|148243458|ref|YP_001228615.1| transcription antitermination protein NusG [Synechococcus sp. RCC307] gi|147851768|emb|CAK29262.1| Transcription antiterminator protein NusG [Synechococcus sp. RCC307] Length = 221 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 38 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKIKKDGSRQSTEEKVFP 97 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVLI+ VM + ++ TP VI F+G E P P++ SE+ I + + Sbjct: 98 GYVLIRMVMDEDTEQAVRSTPNVINFVGHEERRTTGRVRGRIKPRPLSRSEVNRIFKRAQ 157 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++PV V G+R+ V+ GPF F+G V + ++S++ + IFGR TPVEL ++ Sbjct: 158 E--KKPVVKVDLAEGDRISVTAGPFKDFSGEVIEISGDRSKLKALLSIFGRETPVELEFS 215 Query: 172 QVEK 175 Q+ K Sbjct: 216 QISK 219 >gi|213963080|ref|ZP_03391338.1| transcription termination/antitermination factor NusG [Capnocytophaga sputigena Capno] gi|213954164|gb|EEB65488.1| transcription termination/antitermination factor NusG [Capnocytophaga sputigena Capno] Length = 183 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ + E K I SR G V E+ +P+E+VV VR G+K+ +R Sbjct: 6 EKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKITKDRVHM 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGYV++K + +V H IK P V+GFL G +P P+ +++ ++ QV+ + Sbjct: 66 PGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVNRMLGQVDELAETVET 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ FEVGE V + DGPF FNG ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 VAIPFEVGEMVKLIDGPFNGFNGTIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183 >gi|78185724|ref|YP_378158.1| transcription antitermination protein NusG [Synechococcus sp. CC9902] gi|78170018|gb|ABB27115.1| transcription antitermination protein nusG [Synechococcus sp. CC9902] Length = 222 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP + ++K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAIKLKKDGSRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|323344615|ref|ZP_08084839.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella oralis ATCC 33269] gi|323093885|gb|EFZ36462.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella oralis ATCC 33269] Length = 181 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I + + L V ++ IP E+ S+R G++V E+ Sbjct: 6 KNWYVLRAVSGKEAKLKEYIEAEMKHNELLASHVYQVLIPVEKHASLRNGKRVEKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV ++A++ V HT++ P +GFLG ++PSPV S+I ++ E V Sbjct: 66 PGYVFVEAILKGDVAHTLRFMPNCLGFLGGLDDPSPVPQSDINRMLGAAEETELINDVDV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 126 PYTVDETVKVIDGPFSGFSGVIEEVNTEKHKLKVMVKIFGRKTPLELSFMQVEK 179 >gi|327479312|gb|AEA82622.1| transcription antitermination protein NusG [Pseudomonas stutzeri DSM 4166] Length = 159 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLIERVKLAGMEDEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E E I+ +V +P FE GE V V+DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVADGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG+V+ V+ EKSR+ V V+IFGR TPVEL ++QVEK+ Sbjct: 121 DFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV 159 >gi|160944618|ref|ZP_02091845.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii M21/2] gi|158443802|gb|EDP20806.1| hypothetical protein FAEPRAM212_02131 [Faecalibacterium prausnitzii M21/2] gi|295104378|emb|CBL01922.1| transcription antitermination protein nusG [Faecalibacterium prausnitzii SL3/3] Length = 183 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 6/171 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFPG 63 WY+V YS E K + + L L+ +I +P E V + + G++ E + FPG Sbjct: 16 WYVVHTYSGYENKVANDLQTMVENRHLQELICDIKVPVEMVPEIDKNGKQKMVEHKLFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL+K VM D ++ +++T GF+G P P+T E+E + + SV F Sbjct: 76 YVLVKMVMNDDTWYVVRNTRGCTGFVGPASKPVPLTAEEVEKM-----GVEKAAPLSVDF 130 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V ++ GP F G+V+ +D E +V ++V +FGR TP E+ QVE Sbjct: 131 AVGDTVQITAGPLEGFMGLVEAIDTENFKVKLKVNMFGRETPAEVEIGQVE 181 >gi|313159496|gb|EFR58859.1| transcription termination/antitermination factor NusG [Alistipes sp. HGB5] Length = 186 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 109/180 (60%), Gaps = 7/180 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V+ E K E I + + L+ ++++ IP+E+V ++R G+KV+ E+ +P Sbjct: 6 KQWYVVRAIGGKENKVKEYIEAEIRHNNLEEYISQVLIPTEKVYTIRNGKKVSKEKVSYP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEAAVQR 116 GYVL++A ++ I++TP V+GFLG + N +P+ E+ I+ +V+ Sbjct: 66 GYVLVEAAFVGQIPIIIRNTPNVLGFLGDTKEDSRKMNATPLRPQEVARILGRVDEMNAM 125 Query: 117 PVSS-VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + F VGE V V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL + QVEK Sbjct: 126 EEENEIPFFVGETVKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELGFTQVEK 185 >gi|224436430|ref|ZP_03657447.1| transcription antitermination protein NusG [Helicobacter cinaedi CCUG 18818] gi|313142944|ref|ZP_07805137.1| transcription termination factor NusG [Helicobacter cinaedi CCUG 18818] gi|313127975|gb|EFR45592.1| transcription termination factor NusG [Helicobacter cinaedi CCUG 18818] Length = 171 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 4/175 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY +Q YS EK E+I + ++ + E+ +P+E ++ +K +R +P Sbjct: 1 MEWYAIQTYSGSEKSVGEAIRNLIVQNQMQDRFGEVVVPTESIIETKKK---IVDRSLYP 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ + K++H I+ P+V F+G + P+P+++++I I+ +V P + Sbjct: 58 GYVFIQVDLDTKLWHMIQSLPRVGRFIGESKKPTPLSEADIAKILEKVRNPS-APKPKIS 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRNTPVEILYSQVEKIV 171 >gi|134283248|ref|ZP_01769949.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 305] gi|134245443|gb|EBA45536.1| transcription termination/antitermination factor NusG [Burkholderia pseudomallei 305] Length = 160 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 ++ R+ R+G+ +I +P+E VV V+ G K +ERRFFPGYVL++ MTD+ +H Sbjct: 2 QRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFPGYVLVEMEMTDETWHL 61 Query: 79 IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +K+T KV GF+G PSP++ E+E IM+Q++ V++P FEVGE V V +GPF Sbjct: 62 VKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKTLFEVGEMVRVKEGPFT 121 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FNG V+ V+ EKSRV V V IFGR TPVEL + QVEK+ Sbjct: 122 DFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 160 >gi|320531938|ref|ZP_08032843.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 171 str. F0337] gi|320135852|gb|EFW27895.1| transcription termination/antitermination factor NusG [Actinomyces sp. oral taxon 171 str. F0337] Length = 281 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 32/208 (15%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNS 56 M+ +WY++ YS E++ I R ++ + + T+P E V+ ++ +K Sbjct: 74 MSALPGQWYVLHTYSGYERRVAADIMARAENFEVEDYIFDATVPMETVIEIKNGNKKKEV 133 Query: 57 ERRFFPGYVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 R PGYV ++ + D + TIKDTP V GF+G NP P+T E + Sbjct: 134 SRVRIPGYVFVRMDLDDPETSDKVWRTIKDTPAVTGFVGDRYNPVPLTFEEAVAQLGPTP 193 Query: 112 AAVQR-----------------------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + V V FEVGE V V+DGPF S + + Sbjct: 194 EEIAAKEAAAAEATAPESGSGTQIATGGQVFEVAFEVGESVIVTDGPFESLPATISEIHP 253 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E ++ V + +FGR TP EL++ QV KI Sbjct: 254 ETQKLQVLISLFGRDTPAELSFTQVAKI 281 >gi|229827806|ref|ZP_04453875.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC 49176] gi|229788005|gb|EEP24119.1| hypothetical protein GCWU000182_03198 [Abiotrophia defectiva ATCC 49176] Length = 176 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 9/177 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS----ERR 59 WY+V YS E + I + L + E+ +P+E V +R G++ R+ Sbjct: 5 NWYVVHTYSGYENAVKDDIEATIRSRNLQEQIKEVLVPTEEVTIIRSGKESKKGKPTPRK 64 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYV I M D+ ++ I++T V GF+G G P P++ E++ ++N V ++V+ Sbjct: 65 LYPGYVFINMEMNDETWYVIRNTRGVTGFVGPGSKPVPLSAEEMDKMLNSVRSSVEA--- 121 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ V + G F G V V+ ++ V + + GR TPVE+++ ++KI Sbjct: 122 --DIEVGDWVRIVTGSFQDREGEVIEVNLDERLVTININSMGRDTPVEISFTDIKKI 176 >gi|317504004|ref|ZP_07962011.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella salivae DSM 15606] gi|315664864|gb|EFV04524.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella salivae DSM 15606] Length = 181 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E K E I + + L V+++ IP E+ S+R G++V E+ P Sbjct: 7 KWYVLRAVSGKEAKLKEYIDAEMKHNELLSTHVSQVLIPMEKHASLRNGKRVVKEKISLP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ E V Sbjct: 67 GYIFVEANLVGDVVHTLRFMPNCLGFLGGLDNPSPVLQSEINRMLGTAENTEIEGTVDVP 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V E V V DGPF+ F+G+++ ++ EK ++ V V IFGR TP+EL++ QVEK Sbjct: 127 YVVDETVKVIDGPFSGFSGVIEEINAEKHKLKVMVKIFGRKTPLELSFMQVEK 179 >gi|88809791|ref|ZP_01125297.1| transcription antitermination protein NusG [Synechococcus sp. WH 7805] gi|88786175|gb|EAR17336.1| transcription antitermination protein NusG [Synechococcus sp. WH 7805] Length = 222 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V V+K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 QV K Sbjct: 217 QVSK 220 >gi|289803599|ref|ZP_06534228.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 153 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84 + ++ L E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H ++ P+ Sbjct: 1 HIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 60 Query: 85 VIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143 V+GF+G + P+P++D E++ IMN+++ +P FE GE V V+DGPFA FNG+V Sbjct: 61 VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVV 120 Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 EEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 152 >gi|294674795|ref|YP_003575411.1| transcription termination/antitermination factor NusG [Prevotella ruminicola 23] gi|294473430|gb|ADE82819.1| transcription termination/antitermination factor NusG [Prevotella ruminicola 23] Length = 181 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 107/175 (61%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K E + + R L V ++ +P+E+ +R G++V E+ F Sbjct: 6 MKWYVLRAVSGKEAKVKEYLEALMKRDSFLQANVGQVLLPTEKYAQLRNGKRVVKEKLFL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSS 120 PGYVL++A + ++ HT++ P V+GFLG +NP+PV S+I I+ E + Sbjct: 66 PGYVLVEANLQGEMAHTLRFMPNVLGFLGGLDNPTPVKQSDINRILGTAEETEIKSEEIG 125 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + V E V V+DGPF+ F+GI++ V+ EK ++ V V IFGR TP+EL YNQVEK Sbjct: 126 VPYAVDEAVKVTDGPFSGFSGIIEEVNAEKHKLKVMVKIFGRKTPLELGYNQVEK 180 >gi|116074059|ref|ZP_01471321.1| transcription antitermination protein NusG [Synechococcus sp. RS9916] gi|116069364|gb|EAU75116.1| transcription antitermination protein NusG [Synechococcus sp. RS9916] Length = 220 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R + + EI IP V ++K + ++E + FP Sbjct: 37 RWYAVQVASSCEKKVKATLEQRAVTLAVSDRILEIEIPETPAVKIKKDGSRQSTEEKVFP 96 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 97 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 156 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 157 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214 Query: 172 QVEK 175 QV K Sbjct: 215 QVSK 218 >gi|256819266|ref|YP_003140545.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271] gi|315224709|ref|ZP_07866532.1| transcription termination/antitermination factor NusG [Capnocytophaga ochracea F0287] gi|256580849|gb|ACU91984.1| NusG antitermination factor [Capnocytophaga ochracea DSM 7271] gi|314945337|gb|EFS97363.1| transcription termination/antitermination factor NusG [Capnocytophaga ochracea F0287] Length = 183 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ + E K I SR G V E+ +P+E+VV VR G+K +R Sbjct: 6 EKKWYVIKTVTGQENKIKNYIENETSRLGYADYVEEVLVPTEKVVQVRNGKKTTKDRVHM 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGYV++K + +V H IK P V+GFL G +P P+ +++ ++ QV+ + Sbjct: 66 PGYVMVKVHLAGEVVHIIKSIPGVVGFLSETKGGDPLPLRKADVSRMLGQVDELAETVET 125 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ FEVGE V + DGPF FN ++ V+EEK ++ V V IFGR TP+EL+Y QVEK+ Sbjct: 126 VAIPFEVGEMVKLIDGPFNGFNATIERVNEEKRKLEVMVKIFGRKTPLELSYTQVEKL 183 >gi|253579423|ref|ZP_04856693.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849521|gb|EES77481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 171 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K I + L+ + E+ +P + V ++ G +++ F Sbjct: 3 EAKWYVVHTYSGYENKVKVDIEKTIENRHLEDQILEVRVPLQEVAELKNGALKQVQKKMF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+ VM D ++ +++T V GF+G G P P+T+ E+ + +++ V Sbjct: 63 PGYVLLNMVMNDDTWYVVRNTRGVTGFVGPGSKPVPLTEEEM------LPLGIKKEEIQV 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V+ G + G++ ++ +K + V +FGR TPVE+++ +++ Sbjct: 117 DFAEGDTVVVTGGAWKDTVGVITALNVQKQTATINVELFGRETPVEISFAEIK 169 >gi|327404141|ref|YP_004344979.1| transcription antitermination protein nusG [Fluviicola taffensis DSM 16823] gi|327319649|gb|AEA44141.1| transcription antitermination protein nusG [Fluviicola taffensis DSM 16823] Length = 183 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 3/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+V+ S EKK E + +SR LD V+++ IP+E+V +R G+K++ E+ + P Sbjct: 6 KRWYVVRAVSGKEKKVKEYLDLEISRLKLDDYVSQVLIPTEKVFQIRNGKKISKEKAYLP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 GYVLI+A + +V H IK P VIGFLG G +P P+ SE+ I+ +V+ + Sbjct: 66 GYVLIEAALLGEVPHVIKGIPNVIGFLGAEKGGDPQPMRLSEVNRILGKVDELSETEEEL 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F +GE V V DGPF +F+G+V ++E+K ++ V V IFGR +EL+Y QVEK Sbjct: 126 KIPFVIGESVKVIDGPFNNFSGVVDEINEDKKKLKVMVKIFGRKNLLELSYMQVEK 181 >gi|16330012|ref|NP_440740.1| transcription antitermination protein NusG [Synechocystis sp. PCC 6803] gi|548397|sp|P36265|NUSG_SYNY3 RecName: Full=Transcription antitermination protein nusG gi|311688|emb|CAA51202.1| nusG [Synechocystis sp. PCC 6803] gi|1652499|dbj|BAA17420.1| transcription antitermination protein; NusG [Synechocystis sp. PCC 6803] Length = 205 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 10/182 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62 W+ VQV S CEK+ ++ R+ + + ++ IP +V +RK E + FP Sbjct: 22 HWFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFP 81 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP---------VTDSEIEHIMNQVEAA 113 GYVLI+ +M D + +K+TP VI F+G+ + + S E Sbjct: 82 GYVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVD 141 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 Q PV + E+G+ + V GPF F G V V E+S++ + IFGR TPVEL + QV Sbjct: 142 EQEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQV 201 Query: 174 EK 175 EK Sbjct: 202 EK 203 >gi|320536852|ref|ZP_08036847.1| transcription termination/antitermination factor NusG [Treponema phagedenis F0421] gi|320146311|gb|EFW37932.1| transcription termination/antitermination factor NusG [Treponema phagedenis F0421] Length = 185 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+ +S E K +I +S + ++ +I IP E + ++ G+K +R+ Sbjct: 1 MAKEWYILHTFSGYENKIERTIRTLISNGEIPQDVIFDIKIPEEVLTEIKDGKKKTVKRK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKD----TPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113 F PGY+L++ + + + + + V GFLGTG P PV+ +E + I+ + Sbjct: 61 FLPGYLLVEMDLPEMDWKAVCNSVRRIHGVTGFLGTGGNAKPQPVSAAEAKSILQKTGEI 120 Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + + F VG++V + DGPFA+F+G V+ V +++++ V V IFGR TPVEL Sbjct: 121 KGDKTARFARTFTVGQQVKIIDGPFATFSGEVEEVMADRNKLRVMVTIFGRTTPVELEML 180 Query: 172 QVEKI 176 QVE I Sbjct: 181 QVEAI 185 >gi|33864351|ref|NP_895911.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9313] gi|33641131|emb|CAE22261.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9313] Length = 223 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 40 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 99 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E++ I + Sbjct: 100 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 159 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ + V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 160 E--KKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 217 Query: 172 QVEK 175 Q+ K Sbjct: 218 QINK 221 >gi|87123508|ref|ZP_01079359.1| NusG antitermination factor [Synechococcus sp. RS9917] gi|86169228|gb|EAQ70484.1| NusG antitermination factor [Synechococcus sp. RS9917] Length = 220 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V V+K + ++E + FP Sbjct: 37 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 96 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 97 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 156 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 157 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 214 Query: 172 QVEK 175 QV K Sbjct: 215 QVSK 218 >gi|110639547|ref|YP_679756.1| transcription antitermination protein nusG [Cytophaga hutchinsonii ATCC 33406] gi|110282228|gb|ABG60414.1| transcription antitermination protein nusG [Cytophaga hutchinsonii ATCC 33406] Length = 185 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 104/182 (57%), Gaps = 7/182 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V+ S EKK + ++R L V ++ IP+E+V +R G+K ER FF Sbjct: 3 ELHWYVVRAVSGQEKKVKSYLENEITRQRLVDYVPQVLIPAEKVYEMRNGKKRVRERSFF 62 Query: 62 PGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGE-----NPSPVTDSEIEHIMNQVEA-AV 114 PGYVLI+A ++ + H I P V+GFLG E P P+ SE+ I+ V+ V Sbjct: 63 PGYVLIQADLSHGEAAHVITSIPGVLGFLGASEGAASKKPIPLRQSEVNRILGTVDDSQV 122 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V F VGE V V DGPF+ F G V+ V EEK +++V V IFGR TPVEL Y QVE Sbjct: 123 GEVVLETPFVVGETVKVMDGPFSGFTGSVEEVFEEKKKLNVMVKIFGRNTPVELNYIQVE 182 Query: 175 KI 176 K+ Sbjct: 183 KL 184 >gi|261839924|gb|ACX99689.1| transcription antitermination protein NusG [Helicobacter pylori 52] gi|315587091|gb|ADU41472.1| transcription termination/antitermination factor NusG [Helicobacter pylori 35A] Length = 177 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59 M WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER Sbjct: 1 MMMDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERS 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKP 119 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 120 KIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 177 >gi|78213980|ref|YP_382759.1| transcription antitermination protein NusG [Synechococcus sp. CC9605] gi|78198439|gb|ABB36204.1| NusG antitermination factor [Synechococcus sp. CC9605] Length = 222 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|313204187|ref|YP_004042844.1| transcription antitermination protein nusg [Paludibacter propionicigenes WB4] gi|312443503|gb|ADQ79859.1| transcription antitermination protein nusG [Paludibacter propionicigenes WB4] Length = 182 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ S E K E I + S L V ++ IP+E+V +R G+K+ ER PG Sbjct: 8 KWYVMRAISGKENKVKEYIDAEIKNSDLGQFVAQVLIPTEKVYQIRNGKKITKERSCMPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-PSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVLI+A + ++ H +++TP VIGFLG N P+P+ SE+ I+ V+ + Sbjct: 68 YVLIEAYLIGEISHRLRNTPNVIGFLGEKNNVPTPIRPSEVNRILGSVDELQETAEEMLT 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V V GPF+ F+G+++ V+ EK ++ V V+IFGR TP+ELA+ QVEK Sbjct: 128 PFYVGENVKVIFGPFSGFSGLIEEVNSEKKKLKVMVMIFGRKTPLELAFTQVEK 181 >gi|288926253|ref|ZP_06420178.1| transcription termination/antitermination factor NusG [Prevotella buccae D17] gi|315606519|ref|ZP_07881534.1| transcription termination/antitermination factor NusG [Prevotella buccae ATCC 33574] gi|288336944|gb|EFC75305.1| transcription termination/antitermination factor NusG [Prevotella buccae D17] gi|315251925|gb|EFU31899.1| transcription termination/antitermination factor NusG [Prevotella buccae ATCC 33574] Length = 182 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E K E I + + L V++I IP E+ S+R G++V E+ P Sbjct: 7 QWYVLKAVSGKEAKVKEYIEAEMKHNELLASHVSQILIPMEKHASLRNGKRVIKEKVSLP 66 Query: 63 GYVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+ ++A + ++ P V+GFLG +NPSPV SEI ++ E + Sbjct: 67 GYLFVEANLKGGDIASMLRFVPNVLGFLGGLDNPSPVPQSEINRMLGTAEDTELEENLDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F V E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL Y QVEK Sbjct: 127 PFVVDETVKVTDGPFSGFSGVIEEVNAEKHKLKVMVKIFGRKTPLELGYMQVEK 180 >gi|33866874|ref|NP_898433.1| transcription antitermination protein NusG [Synechococcus sp. WH 8102] gi|33639475|emb|CAE08859.1| transcription antitermination protein, NusG [Synechococcus sp. WH 8102] Length = 222 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + EI IP V V+K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAITLGVSKRILEIEIPQTPAVKVKKDGSRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ +E++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRAAGKARGHIKPRPLSRAEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|32265865|ref|NP_859897.1| transcription antitermination protein NusG [Helicobacter hepaticus ATCC 51449] gi|32261914|gb|AAP76963.1| transcription termination factor NusG [Helicobacter hepaticus ATCC 51449] Length = 171 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 4/175 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY +Q YS EK E+I + ++ + ++ +P+E ++ +K +R +P Sbjct: 1 MEWYAIQTYSGSEKVVGEAIRNLIVQNQMQDRFGDVVVPTESIIETKKK---IVDRSLYP 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ + K++H I+ PKV F+G + P+P+++++I I+ +V P + Sbjct: 58 GYVFIQVDLDTKLWHMIQSLPKVGRFIGESKKPTPLSEADIAKILEKVRNPS-APKPKIS 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V + DGPF +F G V+ D E ++ + V IFGR TPVE+ Y+QVEKI+ Sbjct: 117 FEQGEVVRIIDGPFVNFTGTVEEYDLEHKKLKLNVSIFGRSTPVEILYSQVEKII 171 >gi|149922222|ref|ZP_01910660.1| transcription antitermination protein NusG [Plesiocystis pacifica SIR-1] gi|149816962|gb|EDM76447.1| transcription antitermination protein NusG [Plesiocystis pacifica SIR-1] Length = 176 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 103/169 (60%), Gaps = 4/169 (2%) Query: 10 VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA 69 +S E +S+ R+ ++ L+ +I +PSE+V+ R R+V R+FFPGY+ ++ Sbjct: 3 TFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFVRM 62 Query: 70 VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----VQRPVSSVFFEV 125 +T +H +K+TPKV GFL +G+ P PV+ E++ ++ + E + V + + V Sbjct: 63 RLTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDYSV 122 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G++V V G FA+F+G V+ V+ EK ++ + V IFGR T VE+ +++VE Sbjct: 123 GDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171 >gi|261749531|ref|YP_003257217.1| transcription termination/antitermination factor NusG [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497624|gb|ACX84074.1| transcription termination/antitermination factor NusG [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 182 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 107/178 (60%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+ + Sbjct: 5 ERKWYVLKTISGQESKVKSYIENEIRDNGFQEYIGKVLVPIEKVIQMRKGKKIHREKVHY 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 PGYV+I+A + + H IK+ P VI F G G + P+ E+ ++ +++ + Sbjct: 65 PGYVMIEAHLEGEAVHAIKNVPGVINFLSEGKGGSAIPMRKEEVNKMLGKIDQLSENYEN 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F VGE + V DGPF+ FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI Sbjct: 125 FSIPFVVGETIKVIDGPFSGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 182 >gi|148240711|ref|YP_001226098.1| transcription antitermination protein NusG [Synechococcus sp. WH 7803] gi|147849250|emb|CAK24801.1| Transcription antiterminator protein NusG [Synechococcus sp. WH 7803] Length = 222 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKIKKDGSRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 QV K Sbjct: 217 QVSK 220 >gi|306835182|ref|ZP_07468218.1| transcription antitermination protein NusG [Corynebacterium accolens ATCC 49726] gi|304568937|gb|EFM44466.1| transcription antitermination protein NusG [Corynebacterium accolens ATCC 49726] Length = 298 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 22/195 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG Sbjct: 103 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 162 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109 YVL++A + D + I++TP V F+G N +PV ++ + Sbjct: 163 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGDAAPNE 222 Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + FEVGE V + GP A+ + + +D E ++ V IFG Sbjct: 223 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 282 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL+ ++E+I Sbjct: 283 RETPVELSPTEIERI 297 >gi|227502615|ref|ZP_03932664.1| transcription antitermination protein NusG [Corynebacterium accolens ATCC 49725] gi|227076655|gb|EEI14618.1| transcription antitermination protein NusG [Corynebacterium accolens ATCC 49725] Length = 301 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 22/195 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + E+ +P E+++ + G+K +R+ PG Sbjct: 106 QWYIIQCYSGYENKVRTNLDMRAQTLEVEDSIFEVVVPIEQIMENKDGKKKIVKRKLLPG 165 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-------------- 109 YVL++A + D + I++TP V F+G N +PV ++ + Sbjct: 166 YVLVRAELNDAAWSVIRETPGVTSFVGNEGNATPVKTRDVAKFLMPNEAPATKGEAAPNE 225 Query: 110 --------VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + FEVGE V + GP A+ + + +D E ++ V IFG Sbjct: 226 QEGEQVVEMPEKEVAKKYAHDFEVGEAVTILSGPLAAVSATISEIDPETGKMQGLVSIFG 285 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL+ ++E+I Sbjct: 286 RETPVELSPTEIERI 300 >gi|222823474|ref|YP_002575048.1| transcription antitermination protein NusG [Campylobacter lari RM2100] gi|222538696|gb|ACM63797.1| transcription antitermination protein NusG [Campylobacter lari RM2100] Length = 176 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I + G+ + E+ +P+E V+ + G++ SER Sbjct: 1 MNHKWYAIQTYAGSEMAVKRAIENLVRDHGIQEQLLEVIVPTEDVIEFKNGKEKISERSL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GYV ++ +++H I+ PKV F+G + P+P+++ +I I+ +V+ P Sbjct: 61 YSGYVFANIDLSTELWHKIQSLPKVGRFIGESKKPTPLSEKDINLILEKVKNKA-APKPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + F+ E V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEKIV Sbjct: 120 ISFDKEESVRITEGPFANFVGIVEEYDMVRGVLKLNVSIFGRSTPVEILYSQVEKIV 176 >gi|237751211|ref|ZP_04581691.1| transcription antitermination protein nusG [Helicobacter bilis ATCC 43879] gi|229372577|gb|EEO22968.1| transcription antitermination protein nusG [Helicobacter bilis ATCC 43879] Length = 176 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q YS E+ ++I + ++ H + I +P+E V ++ +K +R Sbjct: 1 MEFQWYAIQTYSGSEQSVKKAIENLIEQNNASHRLKNIVVPTEDVFEIKDKKKKTVQRSI 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV + + +++H I+ P+V F+G + P+P+++++I++I++++E P Sbjct: 61 YPGYVFVYISLDTELWHMIQSLPRVGRFIGESKKPTPLSEADIQNILDKIENRP-APRPK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V F GE V ++DGPFA+F G+V++ D + ++ + V IFGR T E+ QVEKI+ Sbjct: 120 VSFATGESVLITDGPFANFTGVVESYDIKTKKLKLNVSIFGRNTLTEINDVQVEKIL 176 >gi|255994046|ref|ZP_05427181.1| transcription termination/antitermination factor NusG [Eubacterium saphenum ATCC 49989] gi|255993714|gb|EEU03803.1| transcription termination/antitermination factor NusG [Eubacterium saphenum ATCC 49989] Length = 198 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 104/173 (60%), Gaps = 6/173 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E+K ++I + G+ L+ +I IP+E V ++ G++ + + + F G Sbjct: 32 RWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFIG 91 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +T++ ++ +++T V GF+G G+ P P+T E+ + +++ + ++ Sbjct: 92 YILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRL------GIEKVIVNLKI 145 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ + V +GPF NG V VDEE + ++ +FGR TPV+L Y Q++K+ Sbjct: 146 KPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDKL 198 >gi|317968194|ref|ZP_07969584.1| transcription antitermination protein NusG [Synechococcus sp. CB0205] Length = 222 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62 RWY VQV S+CEKK ++ R G+D + EI IP V ++K +E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVDKRILEIEIPQTPAVKLKKDGSRTSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKVRGHIKPRPLSRQEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++PV V G+++ V+ GPF F G V V +++++ + IFGR TPVEL ++ Sbjct: 159 E--KKPVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGDRNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|87122751|ref|ZP_01078625.1| transcription antitermination protein NusG [Marinomonas sp. MED121] gi|86161979|gb|EAQ63270.1| transcription antitermination protein NusG [Marinomonas sp. MED121] Length = 149 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G++ EI +P+E VV +R G+K SER+F+PGYVL++ M D +H +K T +V+GF Sbjct: 1 MGMEDYFGEILVPTEEVVEIRDGKKRKSERKFYPGYVLVQMDMNDDSWHLVKGTSRVLGF 60 Query: 89 LGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 +G + PSP+T+ E + I+ +V P FEVGE V V DGPFA FNG+V+ D Sbjct: 61 IGGTADKPSPITEREADAILQRVSDRADNPRPKTLFEVGEVVRVIDGPFADFNGVVEEAD 120 Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +KSR+ V V+IFGR TPV+L ++QVEK Sbjct: 121 YDKSRIKVAVLIFGRSTPVDLEFSQVEK 148 >gi|260435130|ref|ZP_05789100.1| transcription termination/antitermination factor NusG [Synechococcus sp. WH 8109] gi|260413004|gb|EEX06300.1| transcription termination/antitermination factor NusG [Synechococcus sp. WH 8109] Length = 222 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V ++K +E + FP Sbjct: 39 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGTRQSTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ SE++ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRSEVDRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QISK 220 >gi|311693259|gb|ADP96132.1| NusG antitermination factor [marine bacterium HP15] Length = 159 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + ++ R++ ++ EI +P+E VV +R+G+K SER+F+PGYVL++ M D +H Sbjct: 1 MRTLRERVALHEMEDRFGEILVPTEEVVEMREGKKRKSERKFYPGYVLVQMEMDDATWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +K+TP+V+GF+G + P+P+T+ E E I+ +VE+ +P FE GE V V +GPFA Sbjct: 61 VKNTPRVLGFIGGTKDKPAPITEKEAEAILRRVESGADKPKPKTLFEPGEIVRVVEGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FNG+V+ VD +KSRV V V+IFGR TPVEL + QVEK Sbjct: 121 DFNGVVEEVDYDKSRVKVAVLIFGRSTPVELEFGQVEK 158 >gi|159902764|ref|YP_001550108.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9211] gi|159887940|gb|ABX08154.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9211] Length = 219 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 36 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E+ I + Sbjct: 96 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRPTGRGRGHIKPRPLSREEVNRIFKRTS 155 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 156 E--KKTVVKLDLSEGDQILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213 Query: 172 QVEK 175 Q+ K Sbjct: 214 QINK 217 >gi|78776549|ref|YP_392864.1| transcription antitermination protein NusG [Sulfurimonas denitrificans DSM 1251] gi|78497089|gb|ABB43629.1| transcription antitermination protein nusG [Sulfurimonas denitrificans DSM 1251] Length = 179 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 103/181 (56%), Gaps = 6/181 (3%) Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 M + WY +Q Y E+ +I + L +T++ +P+E V+ V+ G+K S Sbjct: 1 MEKKNSHQWYSIQTY-GNERTVRLAILNLIEEMRLQDFITDVIVPTEDVIEVKDGKKKIS 59 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 ER + GYV + + ++ H I+ PKV GF+G P+P+++ +I I+++V+ Sbjct: 60 ERSLYSGYVFARIELNTEIQHIIQSIPKVSGFIGEANIPTPLSEHDINVILDRVQNRA-A 118 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 P VFF+ GE V ++DGPFA+F V D E + + V IFGR TPV+++Y QVEKI Sbjct: 119 PKPKVFFDNGETVRITDGPFANFTATVDEYDLEHGTLKLNVSIFGRATPVDISYTQVEKI 178 Query: 177 V 177 + Sbjct: 179 I 179 >gi|307718195|ref|YP_003873727.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM 6192] gi|306531920|gb|ADN01454.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM 6192] Length = 184 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKLMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114 PGYVL++ + D + I+ V GF+GT P P++ E+ I+ + Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120 Query: 115 QRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180 Query: 173 VEKI 176 VEKI Sbjct: 181 VEKI 184 >gi|315186342|gb|EFU20103.1| transcription antitermination protein nusG [Spirochaeta thermophila DSM 6578] Length = 184 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ Y+ E + +++ + + ++ +P E VV V+ G++ + R+F Sbjct: 1 MARGWYVLHTYTGYENRVEKTLRKFMEEEPYSRYILDVKVPEEEVVEVKDGKRKVTTRKF 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAV 114 PGYVL++ + D + I+ V GF+GT P P++ E+ I+ + Sbjct: 61 LPGYVLVELDLPDIGWRDVCAQIRRINGVTGFVGTTGQSKPHPISQEELRQILQKTGELK 120 Query: 115 QRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 F VGE V + +GPF SF G ++ V+EE+ ++ V V IFGR TP+E+ + Q Sbjct: 121 GERHLRFGETFSVGETVRIVEGPFESFTGTIEEVNEERRKLRVLVGIFGRATPIEVDFLQ 180 Query: 173 VEKI 176 VEKI Sbjct: 181 VEKI 184 >gi|296119180|ref|ZP_06837750.1| transcription antitermination protein NusG [Corynebacterium ammoniagenes DSM 20306] gi|295967806|gb|EFG81061.1| transcription antitermination protein NusG [Corynebacterium ammoniagenes DSM 20306] Length = 299 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYI+Q YS E K ++ R ++ + ++ +P E+V+ + G+K +R+ PG Sbjct: 104 QWYIIQCYSGYENKVKTNLDMRAQTLEVEDSIFDVVVPIEQVLENKDGKKKLVKRKLLPG 163 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM---------------- 107 YVL++ + D + ++DTP V F+G N +PV ++ + Sbjct: 164 YVLVRMELNDAAWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLLPKEGAAAAGDAAANA 223 Query: 108 ------NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + + + VGE V + GPFAS + + +DEE ++ V IFG Sbjct: 224 AEGEQVISMPEKEEAKKYAHDYVVGEAVTILSGPFASVSATISEIDEETGKMVGLVSIFG 283 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL+ ++E+I Sbjct: 284 RETPVELSPTEIERI 298 >gi|261415675|ref|YP_003249358.1| NusG antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372131|gb|ACX74876.1| NusG antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326618|gb|ADL25819.1| transcription termination/antitermination factor NusG [Fibrobacter succinogenes subsp. succinogenes S85] Length = 179 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 5/177 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY V ++ E + + + R G+ I +P+ VVS +G++ S + Sbjct: 1 MSMQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRP 117 FP Y++I+ + + H + V F G P P+ SE++ ++ Sbjct: 61 FPAYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEG 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + +GE VC+ +GPF F G+V + E K + V V +FGR TPVELA+NQVE Sbjct: 121 EIQIPYTIGENVCIKEGPFKGFVGVVDEIMEAK--IKVMVSVFGRSTPVELAFNQVE 175 >gi|283780331|ref|YP_003371086.1| NusG antitermination factor [Pirellula staleyi DSM 6068] gi|283438784|gb|ADB17226.1| NusG antitermination factor [Pirellula staleyi DSM 6068] Length = 267 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 100/176 (56%), Gaps = 4/176 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFFPG 63 WYI++V N E S+ R++ +GL+ ++ +P+E V + G++ +++ +PG Sbjct: 92 WYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYPG 151 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---QVEAAVQRPVSS 120 Y+L+ V D+ + +++T + F G P+P+ ++E I+ +E + ++ Sbjct: 152 YILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRTA 211 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F+VG+RV V +G F +F G + +D+ RV V + IFGR TPVEL + Q+E + Sbjct: 212 IPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267 >gi|28572873|ref|NP_789653.1| transcription antitermination protein NusG [Tropheryma whipplei TW08/27] gi|28411006|emb|CAD67391.1| transcription antitermination protein NusG [Tropheryma whipplei TW08/27] Length = 205 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG Sbjct: 24 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119 YVL++ + + + +++TP + GF+G P P++ E+ ++ + Q Sbjct: 84 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 143 Query: 120 ----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK Sbjct: 144 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 203 >gi|325478598|gb|EGC81710.1| transcription termination/antitermination factor NusG [Anaerococcus prevotii ACS-065-V-Col13] Length = 206 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ F Sbjct: 37 SARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV++K +T+K ++ I++T V GF+G P +T +E+ + ++PV ++ Sbjct: 96 PGYVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVK----DEKPVLNI 151 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + GPF F V+ +D EK + V +FGR T ++L + +E I Sbjct: 152 NVNVGDDVNIISGPFEGFVAKVEEIDSEKGTIKAFVDMFGRDTLIDLDFTDIETI 206 >gi|315452935|ref|YP_004073205.1| transcription antitermination protein nusG [Helicobacter felis ATCC 49179] gi|315131987|emb|CBY82615.1| putative transcription antitermination protein nusG [Helicobacter felis ATCC 49179] Length = 177 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERR 59 M WY +Q YS E+ ++I + + + V E+ +P+E V+ + +K + +ER Sbjct: 1 MGMEWYAIQTYSGSEQAVKKAIENMVHENNIKDRVQEVIVPTEDVIELSKKSKNKVTERS 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGYV IK + ++H I+ P+V F+G + P+P++D++I +I+ ++ P Sbjct: 61 LYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGESKKPTPLSDADIGNILEKITNRA-APKP 119 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +++E GE V + +GPFA+F V+ D E ++ + V IFGR T +E+ Y+QVEKI+ Sbjct: 120 KIYYEKGEVVRIIEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTLIEILYSQVEKII 177 >gi|297380385|gb|ADI35272.1| transcription termination/antitermination factor NusG [Helicobacter pylori v225d] Length = 175 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V DGPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 120 FFEQGEVVRVVDGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175 >gi|28493682|ref|NP_787843.1| transcription antitermination protein [Tropheryma whipplei str. Twist] gi|28476724|gb|AAO44812.1| transcription antitermination protein [Tropheryma whipplei str. Twist] Length = 217 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V + E++A ++ R+ D + ++ +P E VV +R G++ R PG Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119 YVL++ + + + +++TP + GF+G P P++ E+ ++ + Q Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155 Query: 120 ----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V EVGE V + G FA G + + E R+ V + +F R TPVELA++QVEK Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215 >gi|226328678|ref|ZP_03804196.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198] gi|225201864|gb|EEG84218.1| hypothetical protein PROPEN_02573 [Proteus penneri ATCC 35198] Length = 147 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 1/146 (0%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ E+ +P+E VV +R G++ SER+FFPGYVL++ VM D +H +++ P+V+GF+G Sbjct: 1 MEDSFGEVMVPTEEVVEIRSGQRRKSERKFFPGYVLVQMVMNDATWHLVRNVPRVMGFIG 60 Query: 91 T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + P+P++D E++ IMN+++ +P FE GE V VSDGPFA FNG+V+ VD E Sbjct: 61 GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYE 120 Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEK 175 KSR+ V V IFGR TPVEL ++QVEK Sbjct: 121 KSRLKVSVSIFGRATPVELDFSQVEK 146 >gi|300871171|ref|YP_003786043.1| transcription antitermination protein NusG [Brachyspira pilosicoli 95/1000] gi|300688871|gb|ADK31542.1| transcription antitermination protein, NusG [Brachyspira pilosicoli 95/1000] Length = 193 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 11/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV E K E + R+ +G+ LV +I IPSE V + G+KV E F+PG Sbjct: 10 RWYIVHTQHGYENKVRERLEKRIKENGMSDLVVDIYIPSETVQKNKNGKKVTKEEFFYPG 69 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQR- 116 YVL+K VM D ++ TP V GF+G+ N P SE + + + Sbjct: 70 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFEDREAKNK 129 Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + + FE+GE+V V DGPF NG+++N++ +K +V V++ IFGR TP EL +N+ Sbjct: 130 NDINELIGMEFEIGEKVQVIDGPFNGLNGLIENINADKGKVTVKIEIFGRSTPTELDFNK 189 Query: 173 VEKI 176 V+K+ Sbjct: 190 VKKL 193 >gi|69250484|ref|ZP_00605157.1| transcription antitermination protein NusG [Enterococcus faecium DO] gi|68193940|gb|EAN08510.1| transcription antitermination protein NusG [Enterococcus faecium DO] Length = 166 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%) Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72 E K +I R + + + +P E+ V+ G++ + FPGYVL++ +MT Sbjct: 1 GYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTFPGYVLVEMIMT 60 Query: 73 DKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 D ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ V EVGE V Sbjct: 61 DASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQNDLEV--EVGEVV 118 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +G FA G V VD EK ++ V + +FGR T EL ++QV+KI Sbjct: 119 KIIEGAFAGLEGQVTEVDGEKEKLKVNIDMFGRETSTELDFDQVDKI 165 >gi|291334048|gb|ADD93721.1| transcription termination/antitermination factor NusG [uncultured marine bacterium MedDCM-OCT-S05-C114] Length = 192 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 9/180 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY +Q SN E K + ++EI +P E V V+ G+K +R+F+P Sbjct: 10 RWYALQCLSNHEDKVKRYLTKYKEDDEEFASCLSEILVPIETVSEVKNGKKKQRDRKFYP 69 Query: 63 GYVLIKAVMTDK-------VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 GYV ++ + D+ ++ IK+T VI F+G ENP+P+ D EI I+ QV A Sbjct: 70 GYVFVEMKLFDQVGNLKKKPWYKIKETDGVINFIG-RENPTPLADDEIGRILKQVNEAEG 128 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V V F VGE V + DGPF + G ++ +D +K + V V IFGR TPVEL + QVEK Sbjct: 129 KEVPKVKFAVGEVVKILDGPFLNLTGEIEEIDPQKGTLKVSVSIFGRFTPVELEFWQVEK 188 >gi|309792762|ref|ZP_07687207.1| transcription termination/antitermination factor NusG [Oscillochloris trichoides DG6] gi|308225214|gb|EFO78997.1| transcription termination/antitermination factor NusG [Oscillochloris trichoides DG6] Length = 159 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 +++ R+ + + + + +P+E + ++ G++ ++ +PGYVL++ MTD ++ Sbjct: 2 KQNLEHRIDSMEMRNQIFRVIVPTEEEIEIKNGQRRTVNKKIYPGYVLVQMHMTDDSWYV 61 Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138 +++TP V F+G G P+P+ D E++ I+ Q+E + P V ++ G+ V ++DGPF Sbjct: 62 VRNTPGVTSFVGHGNRPTPLEDDEVKTILKQMEG--EAPKVRVSYQKGQAVKITDGPFTD 119 Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F GIV +D E+ RV V V FGR PVEL + QV ++V Sbjct: 120 FEGIVDAIDHERGRVRVLVSFFGREAPVELDFLQVTRLV 158 >gi|300776006|ref|ZP_07085865.1| transcription termination/antitermination factor NusG [Chryseobacterium gleum ATCC 35910] gi|300505139|gb|EFK36278.1| transcription termination/antitermination factor NusG [Chryseobacterium gleum ATCC 35910] Length = 180 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 109/178 (61%), Gaps = 3/178 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+++ S E K I + R G + VT++ IP E+V+ +R G+KV ER ++ Sbjct: 3 ELKWYVLKAISGQENKVKNYIETEIKRLGFEQYVTQVVIPMEKVIQIRNGKKVPKERPYY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPV 118 PGY++I+A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ + Sbjct: 63 PGYLMIEADLMGEIPHVIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFASD 122 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + VGE V V DGPF FNG V+ + E+K ++ V V+IFGR TP+EL+Y QVEK+ Sbjct: 123 VEIPYVVGENVKVIDGPFNGFNGTVEKILEDKKKIEVSVLIFGRKTPMELSYMQVEKV 180 >gi|109948066|ref|YP_665294.1| transcription antitermination protein NusG [Helicobacter acinonychis str. Sheeba] gi|109715287|emb|CAK00295.1| transcription antitermination protein NusG [Helicobacter acinonychis str. Sheeba] Length = 175 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I S L + EI +P+E ++ V +K + +ER + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLASDHDLKDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + + IFGR TP+E+ ++QVEKI+ Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNISIFGRNTPIEILHSQVEKII 175 >gi|33239683|ref|NP_874625.1| transcription antitermination protein NusG [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237208|gb|AAP99277.1| Transcription antiterminator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 219 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+ + + EI IP V ++K + ++E + FP Sbjct: 36 RWYAIQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFP 95 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + ++ TP VI F+G + P P++ E+ I + Sbjct: 96 GYVLVRMILDEDTMMAVRSTPNVINFVGAEDRRITGRGRGHIKPRPLSRQEVNRIFKRAA 155 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 156 E--KKTVVKLDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 213 Query: 172 QVEK 175 Q+ K Sbjct: 214 QISK 217 >gi|227499794|ref|ZP_03929889.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC 35098] gi|227218098|gb|EEI83366.1| transcriptional antiterminator NusG [Anaerococcus tetradius ATCC 35098] Length = 206 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ F Sbjct: 37 SARWYVVHTYTGYENRVKDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 95 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV++K +T+K ++ I++T V GF+G P +T E+ + + P+ ++ Sbjct: 96 PGYVMVKMNVTNKSWYIIRNTQGVTGFVGPDGKPVALTAQEVRKFGVK----EEAPLVNI 151 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++G+ + + GPF F V+ +D+EK + V +FGR T ++L + +E I Sbjct: 152 DLKLGDSINIISGPFKDFVAKVEEIDKEKGTIKAFVDMFGRDTLIDLDFTDIETI 206 >gi|189502709|ref|YP_001958426.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus 5a2] gi|189498150|gb|ACE06697.1| hypothetical protein Aasi_1401 [Candidatus Amoebophilus asiaticus 5a2] Length = 186 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 7/182 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P+WY+++V S EK + L R L V +I IPSE++ +R G++ ER FFP Sbjct: 5 PKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFP 64 Query: 63 GYVLIKAVMTDKVY-HTIKDTPKVIGFLG-----TGENPSPVTDSEIEHIMNQVEAAVQR 116 GY+++ A ++D HTIKD P +GFLG + P P+ + EI I+ +V+ + Sbjct: 65 GYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAED 124 Query: 117 PVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V + DGPF+ F G ++ V EE+ +++V V IF R TP+EL Y QVEK Sbjct: 125 DNGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEK 184 Query: 176 IV 177 I+ Sbjct: 185 IL 186 >gi|262340952|ref|YP_003283807.1| transcription antitermination protein NusG [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272289|gb|ACY40197.1| transcription antitermination protein NusG [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 184 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 107/178 (60%), Gaps = 5/178 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ S E K I + +G + ++ +P E+V+ +RKG+K++ E+ +PG Sbjct: 7 KWYVIKTISGQENKVKSYIENEIRDNGFQEHIGKVLVPIEKVIQMRKGKKIHREKVHYPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 YV+++A + + H IK+ P VI FL G+ P P+ E+ ++ +++ + Sbjct: 67 YVMVEANLEGEAVHAIKNVPGVINFLSEGKGSSAVPIPMRKEEVNKMLGKIDELSENYEN 126 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S+ F VGE + V DGPF FNG ++ ++EEK ++ + V+IFGR TP+EL + Q+EKI Sbjct: 127 ISIPFVVGETIKVIDGPFTGFNGTIEKINEEKRKLELAVLIFGRKTPLELNFTQIEKI 184 >gi|255037208|ref|YP_003087829.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053] gi|254949964|gb|ACT94664.1| NusG antitermination factor [Dyadobacter fermentans DSM 18053] Length = 184 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 6/180 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + W++++ S EKK I ++R L+ V +I IPSE++ +R G+K E+ FF Sbjct: 3 SLNWFVLRAVSGQEKKIKSYIENEITRQKLNEFVPQILIPSEKIYEMRNGKKRVREKNFF 62 Query: 62 PGYVLIKAVMTDKVY-HTIKDTPKVIGF----LGTGENPSPVTDSEIEHIMNQVEAAVQ- 115 PGY++I A ++ H I P VIGF G + P P+ SEI I+ +V+ A Q Sbjct: 63 PGYIIISADLSKGEVLHIITSIPGVIGFLGNAEGNSKVPVPLRQSEINRILGKVDEAEQH 122 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S+ F GE V V DGPF+ F G+V+ V +EK +++V V IFGR TPVEL+Y QVEK Sbjct: 123 EEAPSMSFIKGETVKVVDGPFSGFIGLVEEVFDEKKKLNVVVKIFGRNTPVELSYAQVEK 182 >gi|225621220|ref|YP_002722478.1| transcription antitermination protein NusG [Brachyspira hyodysenteriae WA1] gi|225216040|gb|ACN84774.1| transcription antitermination protein NusG [Brachyspira hyodysenteriae WA1] Length = 195 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 11/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG Sbjct: 12 KWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----TGENPSPVTDSEIEHIMNQVEAAVQR--- 116 YVL+K VM D ++ TP V GF+G T E + + E + ++ + Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKSK 131 Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + + F++GE+V V DGPF NGI++N++ +K RV V++ IFGR TP EL +++ Sbjct: 132 TGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFSK 191 Query: 173 VEKI 176 V+K+ Sbjct: 192 VKKL 195 >gi|283457498|ref|YP_003362079.1| transcription antiterminator [Rothia mucilaginosa DY-18] gi|283133494|dbj|BAI64259.1| transcription antiterminator [Rothia mucilaginosa DY-18] Length = 248 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K I R+ + + E+ +P E VV + K R PGY Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247 Query: 176 I 176 I Sbjct: 248 I 248 >gi|188527990|ref|YP_001910677.1| transcription antitermination protein NusG [Helicobacter pylori Shi470] gi|207091668|ref|ZP_03239455.1| transcription antitermination protein NusG [Helicobacter pylori HPKX_438_AG0C1] gi|217032213|ref|ZP_03437711.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128] gi|217034092|ref|ZP_03439513.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10] gi|298735784|ref|YP_003728309.1| transcriptional antiterminator NusG [Helicobacter pylori B8] gi|308183308|ref|YP_003927435.1| transcription antitermination protein NusG [Helicobacter pylori PeCan4] gi|308184950|ref|YP_003929083.1| transcription antitermination protein NusG [Helicobacter pylori SJM180] gi|188144230|gb|ACD48647.1| transcription antitermination protein NusG [Helicobacter pylori Shi470] gi|216943487|gb|EEC22941.1| hypothetical protein HP9810_893g39 [Helicobacter pylori 98-10] gi|216946084|gb|EEC24695.1| hypothetical protein HPB128_2g15 [Helicobacter pylori B128] gi|261838525|gb|ACX98291.1| transcription termination factor G [Helicobacter pylori 51] gi|298354973|emb|CBI65845.1| transcriptional antiterminator NusG [Helicobacter pylori B8] gi|308060870|gb|ADO02766.1| transcription antitermination protein NusG [Helicobacter pylori SJM180] gi|308062484|gb|ADO04372.1| transcription antitermination protein NusG [Helicobacter pylori Cuz20] gi|308063984|gb|ADO05871.1| transcription antitermination protein NusG [Helicobacter pylori Sat464] gi|308065493|gb|ADO07385.1| transcription antitermination protein NusG [Helicobacter pylori PeCan4] gi|317009881|gb|ADU80461.1| transcription antitermination protein NusG [Helicobacter pylori India7] gi|317012984|gb|ADU83592.1| transcription antitermination protein NusG [Helicobacter pylori Lithuania75] Length = 175 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175 >gi|320101665|ref|YP_004177256.1| NusG antitermination factor [Isosphaera pallida ATCC 43644] gi|319748947|gb|ADV60707.1| NusG antitermination factor [Isosphaera pallida ATCC 43644] Length = 285 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++V S+ E E++ R+ GL+ ++ +P + V +R +K ER+ +PGY Sbjct: 105 WYVLKVQSSREDSIREAMLKRVRIQGLERFFGDVVVPKRKEVEIRNNKKKIVERKTYPGY 164 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------QVEAAVQ 115 +L++ + ++ + TI++TP V F+G +P+ ++ +E++ I+ EA+ + Sbjct: 165 LLVQMELNERTWFTIRETPGVGDFVGPPGSPTKISPAEVQQILGTPSADEKVGIEEASAE 224 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + FE G+RV + DGPF +F G V+ V + V V +VIF R TPV+L Y Q+E+ Sbjct: 225 PVKPKIDFERGDRVKIKDGPFENFEGTVEEVVPARGVVKVMIVIFNRPTPVDLEYWQIER 284 Query: 176 I 176 I Sbjct: 285 I 285 >gi|317182454|dbj|BAJ60238.1| transcription antitermination protein NusG [Helicobacter pylori F57] Length = 176 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E+ ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVERRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|72383408|ref|YP_292763.1| transcription antitermination protein NusG [Prochlorococcus marinus str. NATL2A] gi|72003258|gb|AAZ59060.1| transcription antitermination protein nusG [Prochlorococcus marinus str. NATL2A] Length = 222 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+ + EI IP V ++K + +E + FP Sbjct: 39 RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E+ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QITK 220 >gi|87306550|ref|ZP_01088697.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645] gi|87290729|gb|EAQ82616.1| transcription antiterminator NusG [Blastopirellula marina DSM 3645] Length = 294 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 103/177 (58%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYI++V SN EK ++ R+ +GL+ E+ +P+E +V + G+K ++R+ +P Sbjct: 118 MDWYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYP 177 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---VQRPVS 119 GY+++ + D + +++T + F G P+P+ E+E I +VE + + Sbjct: 178 GYIVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKT 237 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F++G+ V +++G F +F G V+ +DE RV V + IFGR TPVE+ + Q+E + Sbjct: 238 NIRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294 >gi|227497153|ref|ZP_03927401.1| transcription antitermination protein [Actinomyces urogenitalis DSM 15434] gi|226833410|gb|EEH65793.1| transcription antitermination protein [Actinomyces urogenitalis DSM 15434] Length = 263 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63 WY++ YS E++ I R L+ V + +P E V+ V+ +K R PG Sbjct: 64 WYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIPG 123 Query: 64 YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---------- 108 YV ++ + D + TIKDTP V GF+G NP P+T E + Sbjct: 124 YVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYNPVPLTFDEAVSQLGPTPEEVAAKQ 183 Query: 109 ------------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + V V FEVGE V V+DGPF S + + E ++ V Sbjct: 184 AAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQVL 243 Query: 157 VVIFGRVTPVELAYNQVEKI 176 + +FGR TP EL++ QV KI Sbjct: 244 ISLFGRDTPAELSFTQVAKI 263 >gi|90581318|ref|ZP_01237115.1| transcription antitermination protein NusG [Vibrio angustum S14] gi|90437557|gb|EAS62751.1| transcription antitermination protein NusG [Vibrio angustum S14] Length = 150 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G++ E+ +P+E VV VR G++ SER+FFPGYVL++ VM D+ +H ++ P+V+GF Sbjct: 2 HGMEEHFDEVLVPTEEVVEVRAGQRRKSERKFFPGYVLVQMVMNDETWHLVRSIPRVMGF 61 Query: 89 LGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 +G + P+P++D E + I+N+++ A + PV FE GE V V+DGPFA FNG +++VD Sbjct: 62 IGGTSDRPAPISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGTIESVD 121 Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +KSRV V V IFGR TPVEL + Q+EK Sbjct: 122 YDKSRVKVSVSIFGRATPVELEFGQIEK 149 >gi|262163615|ref|ZP_06031358.1| transcription antitermination protein NusG [Vibrio mimicus VM223] gi|262027982|gb|EEY46644.1| transcription antitermination protein NusG [Vibrio mimicus VM223] Length = 148 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 104/147 (70%), Gaps = 1/147 (0%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ L E+ +P+E VV +R G++ SER+FFPGYVL++ +M D+ +H ++ P+V+GF+G Sbjct: 1 MEELFGEVLVPTEEVVEMRAGQRRKSERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIG 60 Query: 91 T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + P+P+TD E + I+N++E A + P FE GE V V+DGPFA FNG V+ VD E Sbjct: 61 GTSDRPAPITDKEADAILNRLEKASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYE 120 Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176 KSR+ V V IFGR TPVEL + QVEK+ Sbjct: 121 KSRLKVSVSIFGRATPVELEFGQVEKL 147 >gi|255326801|ref|ZP_05367877.1| transcription termination/antitermination factor NusG [Rothia mucilaginosa ATCC 25296] gi|255296018|gb|EET75359.1| transcription termination/antitermination factor NusG [Rothia mucilaginosa ATCC 25296] Length = 248 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K I R+ + + E+ +P E VV + K R PGY Sbjct: 68 WYVVHTYSGYENKVKTGIETRIQNLEAEDEIFEVQVPMETVVEFKNTVKKTIRRVRVPGY 127 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGE-NPSPVTDSEIEHIMNQVEAAVQ-------- 115 VL++ +TD + ++ TP V GF+G NP P+ E+ ++ V Q Sbjct: 128 VLVRMELTDHSWGVVRHTPGVTGFVGQDAYNPVPLRMDEVFDMLLPVFEEQQQSQGLPVS 187 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +PV + VGE V V G F + V + E ++ V + +FGR TPV L++ ++EK Sbjct: 188 KPVIESDYTVGENVRVKSGAFEGMDATVSEIKGESQQIVVMISVFGRDTPVTLSFTEIEK 247 Query: 176 I 176 I Sbjct: 248 I 248 >gi|281422263|ref|ZP_06253262.1| transcription termination/antitermination factor NusG [Prevotella copri DSM 18205] gi|281403768|gb|EFB34448.1| transcription termination/antitermination factor NusG [Prevotella copri DSM 18205] Length = 180 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E K E I + + L V+++ IP E+ +VR G++V E+ P Sbjct: 7 KWYVLKAVSGKEAKVKEYIEAEMKHNDLLAANVSQVLIPVEKHATVRNGKRVVKEKVSLP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++A + V HT++ P V+GFLG + P+PV +I ++ E Sbjct: 67 GYVFVEAKLKGDVAHTLRFLPNVLGFLGGLDEPTPVPQRDINRMLGSAEETEFEENLDCP 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + V + V V +GPF+ F+GIV+ V+ EK ++ V V IFGR TP+EL + QVEK Sbjct: 127 YLVNDTVKVMEGPFSGFSGIVEEVNAEKHKLKVTVKIFGRKTPLELGFMQVEK 179 >gi|325853515|ref|ZP_08171347.1| transcription termination/antitermination factor NusG [Prevotella denticola CRIS 18C-A] gi|327313170|ref|YP_004328607.1| transcription termination/antitermination factor NusG [Prevotella denticola F0289] gi|325484319|gb|EGC87247.1| transcription termination/antitermination factor NusG [Prevotella denticola CRIS 18C-A] gi|326944948|gb|AEA20833.1| transcription termination/antitermination factor NusG [Prevotella denticola F0289] Length = 182 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59 +WY+++ S E K E I +L L V E+ +P E+ +VRK K + + Sbjct: 5 EKKWYVLRAVSGKEGKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYVL++A M+ V T++ P V+GFLG +PSPV ++I ++ VE V Sbjct: 65 SLPGYVLVQANMSPDVASTLRFMPNVLGFLGGMSDPSPVRQADINRLLGNVEETELDEVQ 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 DIPYLVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180 >gi|325269552|ref|ZP_08136168.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella multiformis DSM 16608] gi|324988171|gb|EGC20138.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Prevotella multiformis DSM 16608] Length = 182 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59 +WY+++ S E K E I +L L V E+ +P E+ +VRK K + + Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYVL++A MT V T++ P V+GFLG +PSPV ++I ++ VE V Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMADPSPVRQADINRLLGNVEDTELDEVQ 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V V+DGPF+ F+G+++ V+ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 EVPYMVGETVQVTDGPFSGFHGVIEEVNTEKHKLKVMVMIFGRQNPLELSFMQVAK 180 >gi|302345056|ref|YP_003813409.1| transcription termination/antitermination factor NusG [Prevotella melaninogenica ATCC 25845] gi|302149542|gb|ADK95804.1| transcription termination/antitermination factor NusG [Prevotella melaninogenica ATCC 25845] Length = 182 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59 +WY+++ S E K E I +L L V E+ +P E+ +VRK K + + Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 NVPYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180 >gi|57242443|ref|ZP_00370381.1| transcription termination/antitermination factor NusG [Campylobacter upsaliensis RM3195] gi|315639013|ref|ZP_07894183.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Campylobacter upsaliensis JV21] gi|57016728|gb|EAL53511.1| transcription termination/antitermination factor NusG [Campylobacter upsaliensis RM3195] gi|315480925|gb|EFU71559.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Campylobacter upsaliensis JV21] Length = 177 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY +Q Y+ E +I + + ++ + EI +P+E V+ + G++ SER + Sbjct: 3 EHKWYAIQTYAGSEMAVKRAIENLVKDNKIEERLKEIVVPTEDVIEFKNGKEKISERSLY 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV + +++H I+ PKV F+G +NP+P+++ +I I+ + P + Sbjct: 63 SGYVFANLNLDTELWHRIQSLPKVGRFIGESKNPTPLSEKDINLILEKAYNKA-APKPKI 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F GIV+ D + + + V IFGR TPVE+ Y+QVEK++ Sbjct: 122 SFEEGENVRITEGPFANFTGIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKVI 177 >gi|149195233|ref|ZP_01872323.1| transcription antitermination protein NusG [Caminibacter mediatlanticus TB-2] gi|149134666|gb|EDM23152.1| transcription antitermination protein NusG [Caminibacter mediatlanticus TB-2] Length = 179 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY +QVYS E ++I L+ + +I +P+E V+ V+ G+K ER +PG Sbjct: 7 KWYALQVYSGSELAVKKAIENLKKELHLEDKIGQIIVPTEEVIEVKNGKKKIFERSIYPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV ++A + ++H I+ PKV F+G + P+P+ +IE I+ + + P V F Sbjct: 67 YVFLEADLDTALWHKIQSLPKVGRFIGESKKPTPLKKEDIELILQKAKQKT-APKPKVSF 125 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 E GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV Sbjct: 126 EEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 179 >gi|157738108|ref|YP_001490792.1| transcription antitermination protein NusG [Arcobacter butzleri RM4018] gi|315636460|ref|ZP_07891702.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Arcobacter butzleri JV22] gi|157699962|gb|ABV68122.1| transcription termination factor NusG [Arcobacter butzleri RM4018] gi|315479241|gb|EFU69932.1| anaerobic ribonucleoside-triphosphate reductase large subunit [Arcobacter butzleri JV22] Length = 175 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q YS E +++ D + E+ +P+E ++ ++KG+K ER Sbjct: 1 MAHKWYAIQTYSGSELSVKKALIKLAEEMA-DDRIQEVLVPTEDLIEIKKGKKTIVERPL 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P Y K + ++H I+ PKV F+G + P+ ++D +I I+ +V+ Sbjct: 60 YPAYAFAKIDLDTGLWHRIQSMPKVGRFIGESKKPTALSDKDINLILEKVKNRAAA-KPK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V F+ GE V +++G FA+FNG+V++ D + + V IFGR TPVE++Y QVE+IV Sbjct: 119 VSFDTGEMVRINEGAFANFNGLVEDFDMVSGILKLNVSIFGRNTPVEISYTQVERIV 175 >gi|167753046|ref|ZP_02425173.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216] gi|167659360|gb|EDS03490.1| hypothetical protein ALIPUT_01312 [Alistipes putredinis DSM 17216] Length = 186 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 109/181 (60%), Gaps = 7/181 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V+ E K E I + S L+ ++++ IP+E+V ++R G+KV+ E+ + Sbjct: 5 AKQWYVVRTIGGKENKVKEYIESEIRHSHLEEYISQVLIPTEKVYTIRNGKKVSKEKVSY 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN------PSPVTDSEIEHIMNQVEA-AV 114 PGYVLI+A ++ I++ P V+GFLG + +P+ E+ I+ +V+ + Sbjct: 65 PGYVLIEAAFVGQIPIIIRNIPNVLGFLGDTKEDSRKMIATPLRPQEVSRILGRVDELSS 124 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + F VGE + V+DGPF+SF G ++ VD E+ ++ V V IFGR TP+EL++ QVE Sbjct: 125 MEEENEIPFFVGETIKVTDGPFSSFQGTIEAVDNERKKLTVSVKIFGRKTPMELSFTQVE 184 Query: 175 K 175 K Sbjct: 185 K 185 >gi|124024994|ref|YP_001014110.1| transcription antitermination protein NusG [Prochlorococcus marinus str. NATL1A] gi|123960062|gb|ABM74845.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. NATL1A] Length = 222 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+ + EI IP V ++K + +E + FP Sbjct: 39 RWYAIQVASSCEKKVKATLEQRAITLGVSDRIIEIEIPQTPAVKLKKDGSRQTTEEKVFP 98 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E+ I + Sbjct: 99 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVNRIFKRAA 158 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E G+++ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 159 E--KKTVVKLDVEEGDQIVVTAGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 216 Query: 172 QVEK 175 Q+ K Sbjct: 217 QITK 220 >gi|15645817|ref|NP_207994.1| transcription antitermination protein NusG [Helicobacter pylori 26695] gi|108563567|ref|YP_627883.1| transcription antitermination protein NusG [Helicobacter pylori HPAG1] gi|208435099|ref|YP_002266765.1| transcription termination factor [Helicobacter pylori G27] gi|2499340|sp|P55976|NUSG_HELPY RecName: Full=Transcription antitermination protein nusG gi|2314365|gb|AAD08249.1| transcription termination factor NusG (nusG) [Helicobacter pylori 26695] gi|107837340|gb|ABF85209.1| transcription termination factor NusG [Helicobacter pylori HPAG1] gi|208433028|gb|ACI27899.1| transcription termination factor [Helicobacter pylori G27] gi|317177947|dbj|BAJ55736.1| transcription antitermination protein NusG [Helicobacter pylori F16] Length = 176 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|295093315|emb|CBK82406.1| transcription antitermination protein nusG [Coprococcus sp. ART55/1] Length = 175 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K I L + E+ +P E ++ G+ + ER+ PG Sbjct: 8 RWYVVHTYSGYENKVKADIEKTKENRNLQDQILEVVVPVEDATEIKNGKPKSIERKILPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI +M D ++ +++T V GF+G+ E + Q V + Sbjct: 68 YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTDEELSNLYQTSEEV-----VIDV 122 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+ Sbjct: 123 EVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 175 >gi|288803797|ref|ZP_06409224.1| transcription termination/antitermination factor NusG [Prevotella melaninogenica D18] gi|288333704|gb|EFC72152.1| transcription termination/antitermination factor NusG [Prevotella melaninogenica D18] Length = 182 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERR- 59 +WY+++ S E K E I +L L V E+ +P E+ +VRK K + + Sbjct: 5 EKKWYVLRAVSGKEAKVKEYIDAQLRLNEKLAERVFEVLLPMEKHATVRKDGKRVVKEKL 64 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYVL++A MT V T++ P V+GFLG PSPV ++I ++ VE V Sbjct: 65 SLPGYVLVQANMTPDVASTLRFMPNVLGFLGGMSEPSPVRQADINRLLGNVEDTELEEVQ 124 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +V + VGE V V+DGPF+ F+GI++ V+ EK ++ V V+IFGR P+EL++ QV K Sbjct: 125 NVSYMVGETVQVTDGPFSGFHGIIEEVNAEKHKLKVMVMIFGRQNPLELSFMQVAK 180 >gi|284039331|ref|YP_003389261.1| NusG antitermination factor [Spirosoma linguale DSM 74] gi|283818624|gb|ADB40462.1| NusG antitermination factor [Spirosoma linguale DSM 74] Length = 186 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 8/180 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ S EKK + + R LD ++ ++ IP+E+V +R G+K E+ FFPG Sbjct: 5 QWYVIRAVSGQEKKIKSYLDNEIIRQKLDEVIPQVLIPAEKVYEMRNGKKRVREKSFFPG 64 Query: 64 YVLIKAVM-TDKVYHTIKDTPKVIGFLGTGE------NPSPVTDSEIEHIMNQVEAAVQR 116 Y+LI A + ++ I + P V+GFLG + P P+ +E+ I+ +V+ Q Sbjct: 65 YILISADLGNNRALDMILNMPGVLGFLGNSQAGTTSKVPVPLRQAEVNRILGKVDEEAQE 124 Query: 117 PV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +V + GE V V DGPF F G V+ V +++ +V+V V IFGR TPVEL+Y QVEK Sbjct: 125 VAAPTVAYIKGESVKVVDGPFGGFIGTVEEVFDDRKKVNVVVKIFGRNTPVELSYAQVEK 184 >gi|210623165|ref|ZP_03293615.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275] gi|210153778|gb|EEA84784.1| hypothetical protein CLOHIR_01565 [Clostridium hiranonis DSM 13275] Length = 180 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRF 60 +WY+V YS E K +I + G+++++T + +P+E VV +R+ Sbjct: 6 EAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKV 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P YVLIK ++TD+ ++ +++T V GF+G G P P+++ E+ M A + Sbjct: 66 YPSYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIA-MGIELPAQEVVGGD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE G+ V + +G FA G V+ V+ EK V + IFGR +PV + +EKI Sbjct: 125 VDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180 >gi|317178500|dbj|BAJ56288.1| transcription antitermination protein NusG [Helicobacter pylori F30] Length = 176 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ +V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLSRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|307637877|gb|ADN80327.1| Transcription antitermination protein [Helicobacter pylori 908] gi|317014591|gb|ADU82027.1| transcription antitermination protein NusG [Helicobacter pylori Gambia94/24] gi|325996474|gb|ADZ51879.1| Transcription antitermination protein [Helicobacter pylori 2018] gi|325998063|gb|ADZ50271.1| Transcription antitermination protein [Helicobacter pylori 2017] Length = 175 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175 >gi|296126978|ref|YP_003634230.1| NusG antitermination factor [Brachyspira murdochii DSM 12563] gi|296018794|gb|ADG72031.1| NusG antitermination factor [Brachyspira murdochii DSM 12563] Length = 195 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 11/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV E K E I R +G+ L+ +I IPSE V S + G+KV+ E F+PG Sbjct: 12 RWYIVHTQHGYENKVRERIEKRTKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQ-- 115 YVL+K VM D ++ TP V GF+G+ N P SE + + Sbjct: 72 YVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSEADVARIFENRDEKSK 131 Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + + F++GE+V V DGPF NG+++N++ +K RV V++ IFGR TP EL +++ Sbjct: 132 TEINEIIGMEFDIGEKVQVIDGPFNGLNGVIENINSDKGRVTVKIEIFGRSTPTELEFSK 191 Query: 173 VEKI 176 V+K+ Sbjct: 192 VKKL 195 >gi|218133816|ref|ZP_03462620.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC 43243] gi|217991191|gb|EEC57197.1| hypothetical protein BACPEC_01705 [Bacteroides pectinophilus ATCC 43243] Length = 194 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 2/177 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRF 60 PRWY+V YS E K ++SI ++ L+ + ++ +P E V +R ER+ Sbjct: 18 EPRWYVVHTYSGYENKVMDSISKTIANRHLEDQILDVRVPVETVYELRANGTKKAVERKI 77 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 FPGYVL+ VM + ++ +++ V GF+G G P P+T+ E++ + + Sbjct: 78 FPGYVLVNMVMNEDTWYVVRNIRGVTGFVGPGSKPVPLTEEEMKPYGLTSNDSSESDKNV 137 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V +VG+ V V+ G +A +++V+E + V + V +F R TPVE+++++V+K+ Sbjct: 138 VVNLKVGDIVTVTGGAWAGSVKAIQSVNESRQTVTINVDMFSRETPVEISFSEVKKM 194 >gi|224372227|ref|YP_002606599.1| transcription antitermination protein NusG [Nautilia profundicola AmH] gi|223589544|gb|ACM93280.1| transcription termination/antitermination factor NusG [Nautilia profundicola AmH] Length = 174 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY +QVYS E ++I + L ++ E+ +P+E V+ V+ G+K ER +P Sbjct: 1 MNWYALQVYSGSELSVKKAIENLKNELNLHDVIGEVIVPTEEVIEVKNGKKKIFERSIYP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++A + +++H I+ PKV F+G + P+P+ +IE I+ + + P V Sbjct: 61 GYVFLEADLDTELWHKIQSLPKVGRFIGESKKPTPLKKEDIELILEKAKTKT-APKPKVS 119 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FE GE V +++GPFA+F G V++ D EK + + V IFGR TPVE+ Y +VEKIV Sbjct: 120 FEEGEIVRINEGPFANFTGEVEDFDYEKGMLKLNVTIFGRSTPVEIHYTKVEKIV 174 >gi|317180930|dbj|BAJ58716.1| transcription antitermination protein NusG [Helicobacter pylori F32] Length = 176 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F VK D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVKEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|15612191|ref|NP_223843.1| transcription antitermination protein NusG [Helicobacter pylori J99] gi|11387011|sp|Q9ZK20|NUSG_HELPJ RecName: Full=Transcription antitermination protein nusG gi|4155723|gb|AAD06704.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Helicobacter pylori J99] Length = 176 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ Y+QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKII 176 >gi|317011405|gb|ADU85152.1| transcription antitermination protein NusG [Helicobacter pylori SouthAfrica7] Length = 175 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLANDHNIRGRIQEIIVPTEDIIEVSKKSKTKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 120 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 175 >gi|296274146|ref|YP_003656777.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299] gi|296098320|gb|ADG94270.1| NusG antitermination factor [Arcobacter nitrofigilis DSM 7299] Length = 175 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 2/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY +Q +S E ++ RL+ D + ++ +P+E ++ V+KG K ER Sbjct: 1 MAHLWYAIQTHSGSELTVKRALV-RLADEMADGKIADVLVPTEDLIEVKKGNKTIVERPL 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P Y K + ++H I+ PKV F+G + P+P+++ +I I+++V Sbjct: 60 YPAYAFAKIDLDTALWHRIQSMPKVGRFIGESKKPTPLSEKDINSILDKVNNRAAA-KPK 118 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V F+ GE V +++GPFA+FNGIV+ D + + V IFGR TPVE++Y QVE++V Sbjct: 119 VSFDDGEMVRINEGPFANFNGIVEEFDIASGILKLNVSIFGRNTPVEISYTQVERVV 175 >gi|325280613|ref|YP_004253155.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324312422|gb|ADY32975.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 182 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 114/176 (64%), Gaps = 3/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+++V EKK E I ++ GL V+++ IP+E++ VR G+K++ ER FFP Sbjct: 6 KRWYVLRVIGGKEKKVKEYIENEVASLGLQDYVSQVLIPTEKIYQVRNGKKISKERNFFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVS- 119 GYV+I+A + ++ H ++D VIGFLG G +P P+ SEI I+ V+ ++P Sbjct: 66 GYVMIEAALVGEIPHMLRDITNVIGFLGETKGGDPVPMRQSEINRILGTVDELSEQPEEI 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 ++ + VGE V V+DGPF F G+++ V+ +K RV V V +FGR TP+EL++ QVEK Sbjct: 126 NIPYVVGESVKVTDGPFNGFTGVIEEVNNDKKRVKVIVKVFGRQTPLELSFMQVEK 181 >gi|254779750|ref|YP_003057856.1| transcription antitermination protein NusG [Helicobacter pylori B38] gi|254001662|emb|CAX29843.1| Transcription antitermination protein NusG [Helicobacter pylori B38] Length = 176 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 104/176 (59%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + +ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ P+V F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|113953085|ref|YP_731916.1| transcription antitermination protein NusG [Synechococcus sp. CC9311] gi|113880436|gb|ABI45394.1| transcription termination/antitermination factor NusG [Synechococcus sp. CC9311] Length = 192 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+ + + EI IP V V+K + ++E + FP Sbjct: 9 RWYAVQVASSCEKKVKATLEQRAVTLGVSNRILEIEIPETPAVKVKKDGSRQSTEEKVFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ V+ + ++ TP VI F+G + P P++ E++ I + Sbjct: 69 GYVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQEVDRIFKRAA 128 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V V G+++ V+ GPF F G V V E+S++ + IFGR TPVEL ++ Sbjct: 129 E--KKTVVKVDLAEGDQILVTAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFS 186 Query: 172 QVEK 175 Q+ K Sbjct: 187 QISK 190 >gi|255534434|ref|YP_003094805.1| Transcription antitermination protein NusG [Flavobacteriaceae bacterium 3519-10] gi|255340630|gb|ACU06743.1| Transcription antitermination protein NusG [Flavobacteriaceae bacterium 3519-10] Length = 180 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 110/176 (62%), Gaps = 3/176 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ S E K I + G + VT++ IP E+V+ ++ G+KV E+ ++PG Sbjct: 5 KWYVLKSISGQENKVKTYIENEMKHHGFEAFVTQVVIPMEKVIQLKNGKKVPKEKPYYPG 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 Y++++A + ++ H IK+ P VI FL G +P P+ SE+ ++ +++ + +S Sbjct: 65 YLMVEANLVGEIPHIIKNIPGVISFLSLTKGGDPVPMRKSEVNRMLGRMDELSEFAVETS 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F VGE V V DGPF FNG ++ + E+K +V V V+IFGR TP+EL+Y QVEK+ Sbjct: 125 IPFVVGENVKVIDGPFNGFNGTIEKLHEDKKKVEVSVMIFGRKTPMELSYMQVEKV 180 >gi|260880966|ref|ZP_05403283.2| transcription termination/antitermination factor NusG [Mitsuokella multacida DSM 20544] gi|260850064|gb|EEX70071.1| transcription termination/antitermination factor NusG [Mitsuokella multacida DSM 20544] Length = 184 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 96/170 (56%), Gaps = 5/170 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K ++ + + + +++ + +P E V ++ G+K R+ FPGY Sbjct: 18 WYVIHTYSGYENKVKANLERLIHTANMGNMIFNVVVPVEDEVEIKDGKKKVVPRKVFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ ++ + ++ +++T V GF+G+ ++P P+TD+E + I+ + + + Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTDAEAKRILKSMGEEQEH-KPELDVA 136 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V ++ G F ++ G V +D EK+R+ V V TP+EL ++QVE Sbjct: 137 VGDVVRINSGVFENYTGTVSEIDTEKARLKVIVE----ETPIELGFDQVE 182 >gi|125625148|ref|YP_001033631.1| transcription antitermination protein NusG [Lactococcus lactis subsp. cremoris MG1363] gi|124493956|emb|CAL98951.1| transcription antitermination protein nusG [Lactococcus lactis subsp. cremoris MG1363] gi|300071956|gb|ADJ61356.1| transcription antitermination protein NusG [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 3/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKIKDVEENLFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFF 123 VL++ MTD+ + +++TP V GF+G+ N S T + I + + + Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKIVREIDFDV 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+RV + DG F+ F + ++ +K + + V +FGR TPVEL +Q+E I Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183 >gi|210135361|ref|YP_002301800.1| transcription antitermination protein NusG [Helicobacter pylori P12] gi|210133329|gb|ACJ08320.1| transcription antitermination protein NusG [Helicobacter pylori P12] Length = 176 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ ++I + + + EI +P+E ++ V +K + ER + Sbjct: 2 MDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLY 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ PKV F+G + P+P+++++I HI+ ++ P + Sbjct: 62 PGYVFIKVDLDTVLWHKIQSLPKVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKI 120 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 FFE GE V V +GPFA+F V+ D E ++ + V IFGR TP+E+ ++QVEKI+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176 >gi|332182027|gb|AEE17715.1| NusG antitermination factor [Treponema brennaborense DSM 12168] Length = 185 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+ Y+ E K +I L L V +I +P E VV ++ G+K S ++ Sbjct: 1 MAKGWYILHTYTGYEGKIERTIRSLLETGDLSSEAVLDIKVPVEEVVEIKDGKKKTSTKK 60 Query: 60 FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAA 113 F PGY++++ + D + I+ V GF+GTG E P P++ E + ++ + Sbjct: 61 FLPGYIMLELDLPDIGWKAVCSVIRRIQGVTGFVGTGPSERPRPISLEEAKSLLQKSGEI 120 Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + F VGE+V + +G FA+F+G ++ V+ EK+++ V V IFGR TPVE+ Sbjct: 121 KGEKTARLKQSFSVGEQVKIIEGAFATFSGTIEEVNLEKNKLRVMVQIFGRATPVEVDLL 180 Query: 172 QVEKI 176 QVEKI Sbjct: 181 QVEKI 185 >gi|116513058|ref|YP_811965.1| transcription antitermination protein NusG [Lactococcus lactis subsp. cremoris SK11] gi|116108712|gb|ABJ73852.1| Transcription antiterminator [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 3/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++Q Y+ E+K E + R + + + IP+E + + G+ + E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKDVEENLFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVSSVFF 123 VL++ MTD+ + +++TP V GF+G+ N S T E E V Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+RV + DG F+ F + ++ +K + + V +FGR TPVEL +Q+E I Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183 >gi|307565696|ref|ZP_07628165.1| transcription termination/antitermination factor NusG [Prevotella amnii CRIS 21A-A] gi|307345522|gb|EFN90890.1| transcription termination/antitermination factor NusG [Prevotella amnii CRIS 21A-A] Length = 181 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 1/173 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLS-RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E K E I +L S L V E+ +P E+ S+R G++V E+ P Sbjct: 7 KWYVLRAISGKESKVKEYIDAQLRMNSKLAERVFEVLLPMEKHTSLRNGKRVVKEKLSLP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL++A MT V T++ P V+GFLG P+PV +++ ++ VE + V Sbjct: 67 GYVLVQANMTPDVASTLRFIPNVLGFLGGTSEPTPVRQADVNRLLGNVEDVEAGNMQDVP 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V +GPF+ F+G++++V+ EK ++ V V+IFGR P+EL++ QV + Sbjct: 127 YNVGESVKVIEGPFSGFHGVIEDVNTEKHKLKVMVMIFGRQNPLELSFMQVAR 179 >gi|15674086|ref|NP_268261.1| transcription antitermination protein NusG [Lactococcus lactis subsp. lactis Il1403] gi|281492764|ref|YP_003354744.1| transcription antitermination protein NusG [Lactococcus lactis subsp. lactis KF147] gi|14423796|sp|Q9CDV7|NUSG_LACLA RecName: Full=Transcription antitermination protein nusG gi|12725158|gb|AAK06202.1|AE006438_16 transcription antitermination protein [Lactococcus lactis subsp. lactis Il1403] gi|281376416|gb|ADA65902.1| Transcription antitermination protein NusG [Lactococcus lactis subsp. lactis KF147] gi|326407637|gb|ADZ64708.1| transcriptional antiterminator NusG [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 3/173 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++Q Y+ E+K E + R + + + IP+E + + G+ E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-SEIEHIMNQVEAAVQRPVSSVFF 123 VL++ MTD+ + +++TP V GF+G+ N S T E E V Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+RV + DG F+ F + ++ +K + + V +FGR TPVEL +Q+E I Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIEDI 183 >gi|291544032|emb|CBL17141.1| transcription antitermination protein nusG [Ruminococcus sp. 18P13] Length = 175 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 5/175 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY++ YS E K + I + L L+ E+ +P+E+V + G+ ER+ + Sbjct: 4 AAKWYVIHTYSGYENKVAQDIEKVVENRKLHDLILEVKVPTEKVTEITDGKTKEVERKTY 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K V TD ++ +++T V GF+G P+P+T+ E+ + + + VQ V Sbjct: 64 PGYVLLKMVYTDDSWYVVRNTRGVTGFVGPASEPTPLTEKEVAALGVETGSTVQ-----V 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F VG+ V VS F GIV++++ E V V + +FGR TP LA NQV K+ Sbjct: 119 NFAVGDSVKVSGTAMDGFVGIVQSINLEDQTVDVMISMFGRETPATLALNQVIKL 173 >gi|282879912|ref|ZP_06288637.1| transcription termination/antitermination factor NusG [Prevotella timonensis CRIS 5C-B1] gi|281306214|gb|EFA98249.1| transcription termination/antitermination factor NusG [Prevotella timonensis CRIS 5C-B1] Length = 181 Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ + E K E I + + L V++I IP E+ ++R G++V E+ Sbjct: 6 MNWYVLRAVNGKEAKLKEYIEAEMKHNTLLQQHVSQILIPMEKHAALRNGKRVEKEKISL 65 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ ++A + V HT++ P +GFLG +NPSPV SEI ++ VE V Sbjct: 66 PGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGDVEETEITNDVEV 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +EV E V V+DGPF+ F+G+++ V+ EK ++ V V IFGR TP+EL++ QV+K V Sbjct: 126 PYEVDEVVTVTDGPFSGFSGVIEEVNVEKHKLKVMVKIFGRKTPLELSFMQVQKEV 181 >gi|163815635|ref|ZP_02207008.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759] gi|158449272|gb|EDP26267.1| hypothetical protein COPEUT_01810 [Coprococcus eutactus ATCC 27759] Length = 179 Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V YS E K I L + E+ +P E ++ G+ + ER+ PG Sbjct: 12 RWYVVHTYSGYENKVKADIEKTKENRNLQDQIIEVVVPVEDATEIKNGKPKSIERKILPG 71 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVLI +M D ++ +++T V GF+G+ E + Q V + Sbjct: 72 YVLINMIMNDVTWYVVRNTRGVTGFVGSDPRKPVPLTEEELSNLYQTSDEV-----VIDV 126 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EVG+ + V+ G + +K ++ K V +EV +FGRV V++A+ ++K+ Sbjct: 127 EVGDSITVTSGAWEGTVATIKAINTAKQTVAIEVEMFGRVNTVDIAFADIKKL 179 >gi|157412563|ref|YP_001483429.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9215] gi|254525769|ref|ZP_05137821.1| transcription termination/antitermination factor NusG [Prochlorococcus marinus str. MIT 9202] gi|157387138|gb|ABV49843.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9215] gi|221537193|gb|EEE39646.1| transcription termination/antitermination factor NusG [Prochlorococcus marinus str. MIT 9202] Length = 203 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY +QV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAIQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QISK 201 >gi|124005807|ref|ZP_01690645.1| transcription termination/antitermination factor NusG [Microscilla marina ATCC 23134] gi|123988490|gb|EAY28131.1| transcription termination/antitermination factor NusG [Microscilla marina ATCC 23134] Length = 189 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 11/183 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ ++ EKKA + +++ V ++ IPSE+V +R G+K E+ FFPG Sbjct: 5 KWYVVRAIASKEKKAKTYLENEIAKREFHEHVPQVLIPSEKVYEMRNGKKRLREKSFFPG 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG----------TGENPSPVTDSEIEHIMNQVEAA 113 Y++++A + T + + G T ++P + SE+ I+ +V+ + Sbjct: 65 YIMVQANLEKDNPTTGELIHMITSIPGIIGFLGATGSTSKDPVALRQSEVNRILGKVDES 124 Query: 114 VQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + V F VGE V V DGPF F G V+ V EE+ +++V V IFGR TPVEL Y+Q Sbjct: 125 AEDDVKLETTFIVGETVKVIDGPFNGFTGTVEEVFEERQKINVMVKIFGRNTPVELNYSQ 184 Query: 173 VEK 175 VEK Sbjct: 185 VEK 187 >gi|78778593|ref|YP_396705.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9312] gi|78712092|gb|ABB49269.1| transcription antitermination protein nusG [Prochlorococcus marinus str. MIT 9312] Length = 203 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDIEEKDRILVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QINK 201 >gi|126695563|ref|YP_001090449.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9301] gi|126542606|gb|ABO16848.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9301] Length = 203 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QINK 201 >gi|297184066|gb|ADI20185.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 182 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S E+K I ++ +G+ LV + IP E+VV VR G+KV E+ P Sbjct: 6 MKWYVLRTISGQEQKTKTYIEKDMAHAGMSDLVGRVLIPLEKVVQVRNGKKVIKEKTRTP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAVQRPVS- 119 GY+ I+AV+T +V H IK+ P V+GFL GE+PSP+ SE+ ++ +V+ + Sbjct: 66 GYMYIEAVLTGEVSHMIKNLPNVVGFLSNVKGEDPSPMRASEVSRLLGEVDRQAENAAML 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + F +GE V V +GPF++F+ ++ ++EEK ++ V V IFGR TPVEL + +VEK+ Sbjct: 126 MIPFTLGETVKVINGPFSTFDATIEKINEEKQKLEVTVKIFGRKTPVELGFTEVEKL 182 >gi|306820720|ref|ZP_07454347.1| transcription termination/antitermination factor NusG [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551219|gb|EFM39183.1| transcription termination/antitermination factor NusG [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 177 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 4/172 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V YS E K S+ + G+ + + IP E VV +KG + +R+ FPGY Sbjct: 9 WYVVHTYSGYENKVKTSLEKTIENLGMQEYIQNVVIPEENVVENKKGIEKIRKRKIFPGY 68 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VLIK V+TD ++ +++T V GF+G P P+TD E+ ++ + V +V FE Sbjct: 69 VLIKMVVTDDSWYLVRNTKGVTGFVGANSKPIPLTDEEV----AKMRLEEEIYVGNVNFE 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ + + GPF S + + E+KS V ++ +FG+ T +EL ++Q++KI Sbjct: 125 EGDNIIILGGPFDSREAKIIKIMEDKSMVKAQMSMFGKETTIELGFSQIKKI 176 >gi|113474161|ref|YP_720222.1| transcription antitermination protein NusG [Trichodesmium erythraeum IMS101] gi|110165209|gb|ABG49749.1| transcription antitermination protein nusG [Trichodesmium erythraeum IMS101] Length = 224 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 21/195 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP + + G + +SE + Sbjct: 28 ELRWYAVQVASGCEKRVKTNLSQRIQTLDITDKIFKVEIPHIAAIKLRKDGSRQHSEEKV 87 Query: 61 FPGYVLIKAVMT-----------DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---- 105 FPGYVL++ + D+ + +K TP VI F+G + Sbjct: 88 FPGYVLVQMKLNWHEEQKEWRIDDEAWQIVKSTPNVINFVGAEQKRRYGRGRGHVKPLPL 147 Query: 106 -----IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 A Q P V G+ + V GPF F G V V E++++ + IF Sbjct: 148 SSSEVERIFRRAQEQEPYLKVTVAEGDHITVLSGPFKDFEGDVIEVSPERNKLKALLSIF 207 Query: 161 GRVTPVELAYNQVEK 175 GR TPVEL +NQVEK Sbjct: 208 GRDTPVELEFNQVEK 222 >gi|123965469|ref|YP_001010550.1| transcription antitermination protein NusG [Prochlorococcus marinus str. MIT 9515] gi|123199835|gb|ABM71443.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. MIT 9515] Length = 203 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QINK 201 >gi|123967760|ref|YP_001008618.1| transcription antitermination protein NusG [Prochlorococcus marinus str. AS9601] gi|123197870|gb|ABM69511.1| transcription antitermination protein, NusG [Prochlorococcus marinus str. AS9601] Length = 203 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDIEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QINK 201 >gi|257066639|ref|YP_003152895.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548] gi|256798519|gb|ACV29174.1| NusG antitermination factor [Anaerococcus prevotii DSM 20548] Length = 207 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 5/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V Y+ E + + I + + E+T+P+E V V+ K R+ FPG Sbjct: 40 RWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLFPG 98 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K +T+K ++ I++T V GF+G P +T +E+ + + P+ ++ Sbjct: 99 YVMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVK----DEAPILNINV 154 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + GPF F V+ VD+EK + V +FGR T ++L + +E I Sbjct: 155 NVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207 >gi|228470334|ref|ZP_04055238.1| transcription termination/antitermination factor NusG [Porphyromonas uenonis 60-3] gi|228308077|gb|EEK16952.1| transcription termination/antitermination factor NusG [Porphyromonas uenonis 60-3] Length = 180 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + P Sbjct: 1 MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP 117 GYVL++A + HT+ P VIGFL + + P P+ E++ ++ Q + + Sbjct: 61 GYVLVEAALVGDTEHTLCTIPNVIGFLTSRMSDGQLAPEPLRTQEVQDLLGQADRDAEGA 120 Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK Sbjct: 121 GRFDIEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179 >gi|33860765|ref|NP_892326.1| transcription antitermination protein NusG [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633707|emb|CAE18664.1| transcription antitermination protein, NusG [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 203 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWY VQV S+CEKK ++ R G+++ + EI IP + ++K + +E + FP Sbjct: 20 RWYAVQVASSCEKKVKATLEQRSVTLGVNNRIIEIEIPQTPGIKLKKDGSRQTTEEKVFP 79 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDSEIEHIMNQVE 111 GYVL++ ++ + +K TP VI F+G + P P++ E+ I + Sbjct: 80 GYVLVRMILDEDTMMAVKSTPNVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRAS 139 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ V + E +R+ V+ GPF F G V V E++++ + IFGR TPVEL ++ Sbjct: 140 E--KKAVIKLDLEEKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFS 197 Query: 172 QVEK 175 Q+ K Sbjct: 198 QINK 201 >gi|256420746|ref|YP_003121399.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256035654|gb|ACU59198.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 196 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 111/177 (62%), Gaps = 5/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++V S EKK E + + RS +++T+I +P E+V V+ G+KV E+ F+PG Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79 Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVS 119 YV+I+A+ MTD+V +I++ VI FLG + P + +E+ ++ +V+ Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLG-KDKPIALRKAEVNKMLGKVDEMSDNGLTM 138 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S F VGE + + DGPF FNGI++ V E+K ++ V V IFGR TPVEL + QVEKI Sbjct: 139 SEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195 >gi|229830146|ref|ZP_04456215.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM 14600] gi|229791444|gb|EEP27558.1| hypothetical protein GCWU000342_02253 [Shuttleworthia satelles DSM 14600] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 6/168 (3%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 YS E K I ++ L + E+ +P + VV V+ G + ++ FPGYVLI Sbjct: 3 HTYSGYENKVKADIEKTVANRHLQDQILEVMVPMQDVVEVKNGVRKTVSKKIFPGYVLIN 62 Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128 M D ++ +++T GF+G G +P P+T+ E+ + + V F VG+ Sbjct: 63 MYMNDDTWYVVRNTRGATGFVGPGSDPVPLTEREMSKM------GIHTENIEVDFGVGDT 116 Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V G + G+V+ ++ K + + V +FGR TPVE+++ V+K+ Sbjct: 117 VSVIGGAWKDTVGVVQAMNPNKQSLTINVELFGRETPVEISFTDVQKM 164 >gi|119485148|ref|ZP_01619533.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106] gi|119457376|gb|EAW38501.1| transcription antitermination protein NusG [Lyngbya sp. PCC 8106] Length = 210 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 21/195 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60 RWY VQV S CEK+ ++ R+ + + ++ IP + + G + SE + Sbjct: 14 ELRWYAVQVASGCEKRVKVNLEQRIKTLDVGDRILKVQIPQTPTIKLRKDGSRQQSEEKV 73 Query: 61 FPGYVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH---- 105 FPGYVL++ + D+ + +K+TP VI F+G + S Sbjct: 74 FPGYVLVQMKLKWNGDFSHWDIDDEAWQVVKNTPHVINFVGAEQKRSSSRGRGHVKPLPL 133 Query: 106 -----IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 + PV V G+ + V GPF F G V V E++++ + IF Sbjct: 134 SSAEVERIFRQTQQAEPVVQVAMVAGDHIVVLSGPFKDFEGDVIEVSPERNKLKALLSIF 193 Query: 161 GRVTPVELAYNQVEK 175 GR TPVEL +NQVEK Sbjct: 194 GRDTPVELEFNQVEK 208 >gi|313887246|ref|ZP_07820940.1| transcription termination/antitermination factor NusG [Porphyromonas asaccharolytica PR426713P-I] gi|312923299|gb|EFR34114.1| transcription termination/antitermination factor NusG [Porphyromonas asaccharolytica PR426713P-I] gi|332177000|gb|AEE12690.1| NusG antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 180 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 6/179 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 R+Y+++V S EKK E I S L V + +P+E+VVS R G+KV ER + P Sbjct: 1 MRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVVKERPYMP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRP 117 GYVL++A + HT+ P VIGFL + + P P+ E++ ++ Q + + Sbjct: 61 GYVLVEAALVGDTEHTLCTIPNVIGFLNSRMSDGQLSPEPLRTQEVQDLLGQADRDAEGA 120 Query: 118 -VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V + DGPF+ F+ + V +K ++ V V IFGR TP+EL Y QVEK Sbjct: 121 GRFDVEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELDYTQVEK 179 >gi|189184706|ref|YP_001938491.1| transcription antitermination protein NusG [Orientia tsutsugamushi str. Ikeda] gi|189181477|dbj|BAG41257.1| transcription antitermination protein NusG [Orientia tsutsugamushi str. Ikeda] Length = 178 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++ Sbjct: 1 MAYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKT 59 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGY+LIK M D+V ++ K+ F G+ VT+ E++ +M Q+E Q P Sbjct: 60 MPGYILIKMDMIDQVKDFMQKVVKLNRFPGSESKIVQVTEKEVQEMMVQLENKAQDPSFL 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+ Sbjct: 120 EKYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 175 >gi|15639228|ref|NP_218676.1| transcription antitermination protein (nusG) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025469|ref|YP_001933241.1| transcription antitermination protein [Treponema pallidum subsp. pallidum SS14] gi|6093601|sp|O83264|NUSG_TREPA RecName: Full=Transcription antitermination protein nusG gi|3322506|gb|AAC65224.1| transcription antitermination protein (nusG) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018044|gb|ACD70662.1| transcription antitermination protein [Treponema pallidum subsp. pallidum SS14] gi|291059639|gb|ADD72374.1| transcription termination/antitermination factor NusG [Treponema pallidum subsp. pallidum str. Chicago] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+ +S E + ++ + + + +++ +I IP E + V+ G+K R+ Sbjct: 1 MAKEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKD----TPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113 FFPGY+L++ + + + + + P V GFLG+ P V+ E I+ + Sbjct: 61 FFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEI 120 Query: 114 --VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + P + F VG++V + +GPFA+F+G V+ V E+++V V V IFGR TPVEL Sbjct: 121 KGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELV 180 Query: 172 QVEKI 176 QVE + Sbjct: 181 QVEAL 185 >gi|326792626|ref|YP_004310447.1| NusG antitermination factor [Clostridium lentocellum DSM 5427] gi|326543390|gb|ADZ85249.1| NusG antitermination factor [Clostridium lentocellum DSM 5427] Length = 172 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M RWY+V +S E K +I + ++ L+ + +P ++ V + G K +R+ Sbjct: 1 MEKARWYVVHTFSGYENKVKANIEKAIKNRNMEELIHAVEVPLQQEVEEKNGVKKTVQRK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FPGYVL+K VMTD ++ +++T V GF+G P ++ E++++ ++ + Sbjct: 61 TFPGYVLVKMVMTDDTWYVVRNTRGVTGFVGPDSKPVSLSLEEVKNMGIELYGPAPKV-- 118 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 ++G+ V + G F + GIVK + + K + V V FGR PVE++ NQVE Sbjct: 119 ----KIGDAVTLLTGAFENSEGIVKEIHQSKGTIVVSVSGFGREFPVEISMNQVE 169 >gi|212696286|ref|ZP_03304414.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM 7454] gi|325846531|ref|ZP_08169446.1| transcription termination/antitermination factor NusG [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676915|gb|EEB36522.1| hypothetical protein ANHYDRO_00823 [Anaerococcus hydrogenalis DSM 7454] gi|325481289|gb|EGC84330.1| transcription termination/antitermination factor NusG [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 197 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV++K +T++ ++ I++T V GF+G P P+T E+ + +PV ++ Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKFGIK----EDKPVLNID 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + GPF +K +D EK + + +FGR T ++L + +E I Sbjct: 144 INVGDNVNIIQGPFKDLVAEIKEIDPEKQIIKALIDMFGRDTIIDLGFEDIETI 197 >gi|306830215|ref|ZP_07463398.1| transcription termination/antitermination factor NusG [Streptococcus mitis ATCC 6249] gi|304427582|gb|EFM30679.1| transcription termination/antitermination factor NusG [Streptococcus mitis ATCC 6249] Length = 183 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+K E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMMISMFGNDTIAEVNLNQI 180 >gi|307243194|ref|ZP_07525367.1| transcription termination/antitermination factor NusG [Peptostreptococcus stomatis DSM 17678] gi|306493455|gb|EFM65435.1| transcription termination/antitermination factor NusG [Peptostreptococcus stomatis DSM 17678] Length = 180 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-VSVRKGRKVNSERRFF 61 +WY+V YS E K +I + G+++++ ++ +P+E V + + G++ +R+ F Sbjct: 7 MQWYVVHTYSGHENKVKTTIENTVKNRGMENIIEQVIVPTEDVVTTTKTGKEKMVQRKVF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YV++K MTD+ ++ +++T V GF+G G P P+T E+ M A + + Sbjct: 67 PSYVIVKMEMTDESWYVVRNTKGVTGFVGPGSKPVPLTVDEV-RAMGIELPASKIVSGEI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V G F G V++V+ EK V V V FGR V L +EKI Sbjct: 126 DLNPGDTVRVISGAFVDNVGEVEDVNIEKKEVKVYVNAFGRKALVTLGLENIEKI 180 >gi|257126639|ref|YP_003164753.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b] gi|257050578|gb|ACV39762.1| NusG antitermination factor [Leptotrichia buccalis C-1013-b] Length = 207 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 16/191 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS EKK + R+ L V I +P E V+ ++G++V R+ F Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 P YV+I+ + ++ I++T V GF+G G +P P++D E +++ Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLA 134 Query: 109 QVEAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 ++ V+ P + F+VGE V V G F G + +D E +V V + + GR+TP Sbjct: 135 KIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTP 194 Query: 166 VELAYNQVEKI 176 VE+ + ++ KI Sbjct: 195 VEVEHTEIAKI 205 >gi|307702534|ref|ZP_07639487.1| transcription termination/antitermination factor NusG [Streptococcus oralis ATCC 35037] gi|331265605|ref|YP_004325235.1| transcription antitermination protein NusG [Streptococcus oralis Uo5] gi|307623880|gb|EFO02864.1| transcription termination/antitermination factor NusG [Streptococcus oralis ATCC 35037] gi|326682277|emb|CBY99894.1| transcription antitermination protein NusG [Streptococcus oralis Uo5] Length = 178 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+K E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 175 >gi|220909378|ref|YP_002484689.1| transcription antitermination protein NusG [Cyanothece sp. PCC 7425] gi|219865989|gb|ACL46328.1| NusG antitermination factor [Cyanothece sp. PCC 7425] Length = 217 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 25/196 (12%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61 WY VQV S CEKK +++ R + + +I IP + + G + SE + F Sbjct: 22 KHWYAVQVASGCEKKVKQNLEQRRQTLDVADRILQIEIPQTPTIKLRKDGSRQTSEEKVF 81 Query: 62 PGYVLI-----------KAVMTDKVYHTIKDTPKVIGFLGTGENPS-----------PVT 99 PGYVL+ K + D+ + I++TP VI F+G + + Sbjct: 82 PGYVLLLIREAWDDKRGKWRIDDEAWQVIRNTPNVINFVGAEQRKHTGRGRGHVEPVRLH 141 Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 SE+E I Q + Q PV + G+++ V +GPF F G V V E+S++ + I Sbjct: 142 PSEVERIFRQTKE--QEPVHKIDLAAGDKIRVLNGPFKDFEGEVIEVSGERSKLKALLSI 199 Query: 160 FGRVTPVELAYNQVEK 175 FGR TPVEL NQV+K Sbjct: 200 FGRETPVELEVNQVQK 215 >gi|307705692|ref|ZP_07642538.1| transcription termination/antitermination factor NusG [Streptococcus mitis SK597] gi|307707716|ref|ZP_07644195.1| transcription termination/antitermination factor NusG [Streptococcus mitis NCTC 12261] gi|307710897|ref|ZP_07647323.1| transcription termination/antitermination factor NusG [Streptococcus mitis SK321] gi|307616214|gb|EFN95408.1| transcription termination/antitermination factor NusG [Streptococcus mitis NCTC 12261] gi|307617253|gb|EFN96427.1| transcription termination/antitermination factor NusG [Streptococcus mitis SK321] gi|307620706|gb|EFN99796.1| transcription termination/antitermination factor NusG [Streptococcus mitis SK597] Length = 178 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175 >gi|260890608|ref|ZP_05901871.1| transcription termination/antitermination factor NusG [Leptotrichia hofstadii F0254] gi|260859653|gb|EEX74153.1| transcription termination/antitermination factor NusG [Leptotrichia hofstadii F0254] Length = 207 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 16/191 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ F Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 74 Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 P YV+I+ + ++ I++T V GF+G G +P P++D E ++ Sbjct: 75 PSYVMIEMRSVREENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASDLLA 134 Query: 109 QVEAAVQ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 +V V P + F+VGE V + G F G + +D E +V V + + GR+TP Sbjct: 135 KVGMDVDGENAPRIGIDFKVGEVVAIRGGSFDGQQGEISEIDYEHGKVKVMLEVLGRLTP 194 Query: 166 VELAYNQVEKI 176 VE+ + ++ KI Sbjct: 195 VEVEHTEIAKI 205 >gi|270293432|ref|ZP_06199640.1| transcription antitermination protein NusG [Streptococcus sp. M143] gi|293364534|ref|ZP_06611257.1| transcription antitermination protein NusG [Streptococcus oralis ATCC 35037] gi|315611917|ref|ZP_07886835.1| transcription termination/antitermination factor NusG [Streptococcus sanguinis ATCC 49296] gi|322376154|ref|ZP_08050662.1| transcription termination/antitermination factor NusG [Streptococcus sp. C300] gi|270278094|gb|EFA23943.1| transcription antitermination protein NusG [Streptococcus sp. M143] gi|291316946|gb|EFE57376.1| transcription antitermination protein NusG [Streptococcus oralis ATCC 35037] gi|315315906|gb|EFU63940.1| transcription termination/antitermination factor NusG [Streptococcus sanguinis ATCC 49296] gi|321278836|gb|EFX55881.1| transcription termination/antitermination factor NusG [Streptococcus sp. C300] Length = 183 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+K E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 180 >gi|322379403|ref|ZP_08053773.1| transcription antitermination protein NusG [Helicobacter suis HS1] gi|322379973|ref|ZP_08054247.1| transcription antitermination protein NusG [Helicobacter suis HS5] gi|321147601|gb|EFX42227.1| transcription antitermination protein NusG [Helicobacter suis HS5] gi|321148112|gb|EFX42642.1| transcription antitermination protein NusG [Helicobacter suis HS1] Length = 175 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 107/176 (60%), Gaps = 2/176 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY +Q YS E+ +++ + +G+ + V ++ +P+E V+ + +KG+ +ER + Sbjct: 1 MEWYAIQTYSGSEQSVKKAVENMVRENGIANRVEKVIVPTEDVIELSKKGKNKVTERSLY 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV IK + ++H I+ PKV F+G + P+P++D++I +I+ ++ P + Sbjct: 61 PGYVFIKVDLDTVLWHKIQSLPKVSRFIGESKKPTPLSDADIGNILEKMANRA-APKPKI 119 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 ++E GE V + +GPFA+F V+ D E ++ + V IFGR T +++ Y+QVEKI+ Sbjct: 120 YYEKGEVVRIVEGPFANFTATVEEYDVEHRKLKLSVSIFGRNTLIDILYSQVEKII 175 >gi|261367232|ref|ZP_05980115.1| transcription termination/antitermination factor NusG [Subdoligranulum variabile DSM 15176] gi|282570832|gb|EFB76367.1| transcription termination/antitermination factor NusG [Subdoligranulum variabile DSM 15176] Length = 179 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK------VNSE 57 WY+V YS E K + + + L L+ ++ +P+E V+ + + Sbjct: 6 NWYVVHTYSGYENKVAQDLMTMVENRRLQDLICDVKVPTETVIEEVLDKTGNKTGEKEVQ 65 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 R+ +PGYV +K VM D ++ +++T GF+G P P+T++E+ + Sbjct: 66 RKLYPGYVFVKMVMNDNTWYIVRNTRGCTGFVGPESKPEPLTEAEVAKM-----GVETTA 120 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V ++VG+ V ++ GP G V+ +D +V V++ +FGR P EL +QV+ Sbjct: 121 ELQVDYKVGDTVEITAGPMEGSVGTVEEIDIPARKVRVKITMFGRELPAELELHQVK 177 >gi|306826325|ref|ZP_07459658.1| transcription termination/antitermination factor NusG [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431438|gb|EFM34421.1| transcription termination/antitermination factor NusG [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 183 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+K E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEIEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTIAEVNLNQI 180 >gi|319946091|ref|ZP_08020339.1| transcription antitermination protein NusG [Streptococcus australis ATCC 700641] gi|319747737|gb|EFV99982.1| transcription antitermination protein NusG [Streptococcus australis ATCC 700641] Length = 178 Score = 134 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQIEKNGKTKEIEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I N + + Q ++ Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRNILISMGQTVQDFNI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIITMFGNDTVAEVNLNQI 175 >gi|268608956|ref|ZP_06142683.1| transcription antitermination protein NusG [Ruminococcus flavefaciens FD-1] Length = 175 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 5/172 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K + I + L L+ E+ +P+E V + G+ ER+ + Sbjct: 4 AAKWYVVHTYSGYENKVAKDIEKTVENRKLHELIQEVRVPTETVTEITDGKTKEVERKTY 63 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVLIK V+ D ++ +++T GF+G P+P++++E++ + V V Sbjct: 64 PGYVLIKMVVNDDTWYLVRNTRGCTGFVGPASEPTPLSEAEVKQLFG-----VDVSSVEV 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F+VG+RV +S F G+V+N++ E V + V +FGR TP L +QV Sbjct: 119 NFKVGDRVQISGTAMDGFIGVVQNINLEDRSVDLLVSMFGRETPTTLPISQV 170 >gi|160947356|ref|ZP_02094523.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270] gi|158446490|gb|EDP23485.1| hypothetical protein PEPMIC_01290 [Parvimonas micra ATCC 33270] Length = 179 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 8/174 (4%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY+V YS E K +I + G D + E+ +P+ + + ER+ F Sbjct: 13 EAKWYVVHTYSGHENKVKANIEKLVVNRGNDIDIFEVVVPTVKEETETGK---IKERQLF 69 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYVL+K ++TD ++ +++T V GF+G+G P P+++ E+E + +P +V Sbjct: 70 PGYVLVKMIITDISWYLVRNTRGVTGFVGSGNKPVPLSEKEVEAL-----GVSAKPYDNV 124 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ + + DG F V V +E ++ V +FGR T EL ++ V K Sbjct: 125 DIHEGDSITIIDGAFKDLTAKVIEVSQENGKLKAFVSLFGRDTLAELDFSDVIK 178 >gi|326799806|ref|YP_004317625.1| NusG antitermination factor [Sphingobacterium sp. 21] gi|326550570|gb|ADZ78955.1| NusG antitermination factor [Sphingobacterium sp. 21] Length = 181 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 113/174 (64%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V+ S EKK + I ++R G++HLV ++ IP E+ +R+G+K+ ER ++PG Sbjct: 7 KWYVVRAVSGKEKKVKQYIEAEINRLGINHLVPQVLIPMEKYFQMREGKKIAKERNYYPG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 YVL++A + ++ H IK+ VIGFLG N P+ +E+ I+ V+ ++ + +V Sbjct: 67 YVLLEAALDGELEHVIKNINSVIGFLGDKAGNAIPLRQAEVNRILGTVDEMSEQGEMMNV 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + VGE V V+DGPF F+G ++ V+EEK ++ V V +FGR TP+EL Y QVEK Sbjct: 127 PYYVGESVKVTDGPFNGFSGEIEEVNEEKKKLKVMVKVFGRKTPLELNYMQVEK 180 >gi|284050920|ref|ZP_06381130.1| transcription antitermination protein NusG [Arthrospira platensis str. Paraca] gi|291565933|dbj|BAI88205.1| transcription antitermination protein NusG [Arthrospira platensis NIES-39] Length = 223 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 25/195 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFP 62 RWY VQV S CEK+ ++ R+ + + ++ IP + + +RK + + FP Sbjct: 29 RWYAVQVASGCEKRVKLNLDQRVQTLDVADRILKVEIPQTQAIKLRKDGSRQHGQEKVFP 88 Query: 63 GYVLIKA-----------VMTDKVYHTIKDTPKVIGFLGTGENPS-----------PVTD 100 GYVLI+ + D+ + +K+TP VI F+G + P++ Sbjct: 89 GYVLIQMKLNWNNELNQWDVDDEAWQVVKNTPHVINFVGAEQKRHSGRGRGHVKPLPLSP 148 Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 SE++ I Q + Q V V G+ + V GPF F G V V E++++ + IF Sbjct: 149 SEVDRIFRQTQQ--QETVVKVEMASGDHILVLSGPFKDFEGDVIEVSPERNKLKALLSIF 206 Query: 161 GRVTPVELAYNQVEK 175 GR TPVEL +NQVEK Sbjct: 207 GRDTPVELEFNQVEK 221 >gi|322392790|ref|ZP_08066248.1| transcription antitermination protein NusG [Streptococcus peroris ATCC 700780] gi|321144368|gb|EFX39771.1| transcription antitermination protein NusG [Streptococcus peroris ATCC 700780] Length = 178 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 NVEVGQTVRIIDGAFTDYTGKITEID--NNKVKMTISMFGNDTVAEVNLNQI 175 >gi|322378273|ref|ZP_08052755.1| transcription termination/antitermination factor NusG [Streptococcus sp. M334] gi|321280775|gb|EFX57793.1| transcription termination/antitermination factor NusG [Streptococcus sp. M334] Length = 183 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDL 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180 >gi|315222231|ref|ZP_07864138.1| transcription termination/antitermination factor NusG [Streptococcus anginosus F0211] gi|319940425|ref|ZP_08014775.1| transcription antitermination protein nusG [Streptococcus anginosus 1_2_62CV] gi|315188734|gb|EFU22442.1| transcription termination/antitermination factor NusG [Streptococcus anginosus F0211] gi|319810481|gb|EFW06823.1| transcription antitermination protein nusG [Streptococcus anginosus 1_2_62CV] Length = 178 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVKVGDTVRIIDGAFADYTGKITEID--NNKVKMIISLFGNDTVAEVNLNQI 175 >gi|15901830|ref|NP_346434.1| transcription antitermination protein NusG [Streptococcus pneumoniae TIGR4] gi|116515696|ref|YP_817227.1| transcription antitermination protein NusG [Streptococcus pneumoniae D39] gi|168487640|ref|ZP_02712148.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC1087-00] gi|169834180|ref|YP_001695362.1| transcription antitermination protein NusG [Streptococcus pneumoniae Hungary19A-6] gi|172079577|ref|ZP_02709033.2| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC1873-00] gi|183603315|ref|ZP_02714099.2| transcription termination/antitermination factor NusG [Streptococcus pneumoniae SP195] gi|183603677|ref|ZP_02718816.2| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC3059-06] gi|194398075|ref|YP_002038590.1| transcription antitermination protein NusG [Streptococcus pneumoniae G54] gi|221232730|ref|YP_002511884.1| transcription antitermination factor [Streptococcus pneumoniae ATCC 700669] gi|225855498|ref|YP_002737010.1| transcription antitermination protein NusG [Streptococcus pneumoniae JJA] gi|225857582|ref|YP_002739093.1| transcription antitermination protein NusG [Streptococcus pneumoniae P1031] gi|225859764|ref|YP_002741274.1| transcription antitermination protein NusG [Streptococcus pneumoniae 70585] gi|225861827|ref|YP_002743336.1| transcription antitermination protein NusG [Streptococcus pneumoniae Taiwan19F-14] gi|298229090|ref|ZP_06962771.1| transcription antitermination protein NusG [Streptococcus pneumoniae str. Canada MDR_19F] gi|307068619|ref|YP_003877585.1| transcription antiterminator [Streptococcus pneumoniae AP200] gi|307128208|ref|YP_003880239.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae 670-6B] gi|14973517|gb|AAK76074.1| transcription antitermination protein NusG [Streptococcus pneumoniae TIGR4] gi|116076272|gb|ABJ53992.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae D39] gi|168996682|gb|ACA37294.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae Hungary19A-6] gi|172042609|gb|EDT50655.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC1873-00] gi|183569582|gb|EDT90110.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC1087-00] gi|183571666|gb|EDT92194.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae SP195] gi|183575431|gb|EDT95959.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC3059-06] gi|194357742|gb|ACF56190.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae G54] gi|220675192|emb|CAR69778.1| transcription antitermination factor [Streptococcus pneumoniae ATCC 700669] gi|225720344|gb|ACO16198.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae 70585] gi|225723234|gb|ACO19087.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae JJA] gi|225724365|gb|ACO20217.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae P1031] gi|225727169|gb|ACO23020.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae Taiwan19F-14] gi|301794946|emb|CBW37409.1| transcription antitermination factor [Streptococcus pneumoniae INV104] gi|301800768|emb|CBW33418.1| transcription antitermination factor [Streptococcus pneumoniae OXC141] gi|301802685|emb|CBW35452.1| transcription antitermination factor [Streptococcus pneumoniae INV200] gi|306410156|gb|ADM85583.1| Transcription antiterminator [Streptococcus pneumoniae AP200] gi|306485270|gb|ADM92139.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae 670-6B] gi|327389002|gb|EGE87349.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae GA04375] gi|332071720|gb|EGI82212.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae GA17545] gi|332071800|gb|EGI82290.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae GA17570] gi|332071866|gb|EGI82355.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae GA41301] Length = 178 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175 >gi|22297838|ref|NP_681085.1| transcription antitermination protein NusG [Thermosynechococcus elongatus BP-1] gi|22294015|dbj|BAC07847.1| transcription antitermination protein [Thermosynechococcus elongatus BP-1] Length = 227 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 25/195 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63 WY VQV S CEKK +I RL + + I IP V+ ++K + E + FPG Sbjct: 34 WYAVQVASGCEKKVKSTIEQRLHTLDVADRIFRIEIPQTPVIKIKKDGSRQTIEEKVFPG 93 Query: 64 YVLIK-----------AVMTDKVYHTIKDTPKVIGFLGTGE-----------NPSPVTDS 101 YVL++ + D+ + IK+TP VI F+G + P P++ + Sbjct: 94 YVLVQVRAQQSPETGEWQIDDEAWQVIKNTPNVINFVGAEQRRSTGRGRGHVKPMPLSPA 153 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E+E I + + Q PV + G+++ V +GPF F G V V E+S++ + IFG Sbjct: 154 EVERIFRKAQE--QEPVHRIDLNSGDKIKVLNGPFKDFEGEVIEVSAERSKLKALLSIFG 211 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL QVEK+ Sbjct: 212 RETPVELEVTQVEKV 226 >gi|328949288|ref|YP_004366625.1| NusG antitermination factor [Treponema succinifaciens DSM 2489] gi|328449612|gb|AEB15328.1| NusG antitermination factor [Treponema succinifaciens DSM 2489] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 9/185 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+Q YS E+K ++ L+ LD ++V ++ +P E VV + G+K Sbjct: 1 MARSWYILQTYSGYEQKIQRTLATMLTEQKLDSNIVFQVKVPMEEVVEISNGKKHVRNNL 60 Query: 60 FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEA- 112 PGY++I+ + + I+ V GF+G E P P++ E ++I+ Sbjct: 61 ILPGYIMIEMDLPQIGWKNTCSLIRRVQGVTGFVGVKPSEKPRPISTDEAKNILQMAGEL 120 Query: 113 -AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ FEVGE V +++GPFA+F+G +++++ EK+++ V V IFGR TPVE+ Sbjct: 121 KGEKQVRIKQNFEVGETVKITEGPFATFSGAIEDINTEKNKLRVNVQIFGRATPVEVDVL 180 Query: 172 QVEKI 176 QVEKI Sbjct: 181 QVEKI 185 >gi|182684943|ref|YP_001836690.1| transcription antitermination protein NusG [Streptococcus pneumoniae CGSP14] gi|182630277|gb|ACB91225.1| transcription antitermination protein NusG [Streptococcus pneumoniae CGSP14] Length = 183 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ + FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVQENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180 >gi|39938741|ref|NP_950507.1| transcription antiterminator [Onion yellows phytoplasma OY-M] gi|39721850|dbj|BAD04340.1| transcription antiterminator [Onion yellows phytoplasma OY-M] Length = 204 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ ++TD+ + +++TP++ GFLG+ S I + Sbjct: 90 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I Sbjct: 150 NFIGKKVEIISGSFSGQIGQVSSIDDDREKMTVEVDLFGRATPVEISFNDFKEI 203 >gi|157150102|ref|YP_001451256.1| transcription antitermination protein NusG [Streptococcus gordonii str. Challis substr. CH1] gi|262283603|ref|ZP_06061368.1| transcription termination/antitermination factor NusG [Streptococcus sp. 2_1_36FAA] gi|157074896|gb|ABV09579.1| transcription termination/antitermination factor NusG [Streptococcus gordonii str. Challis substr. CH1] gi|262260660|gb|EEY79361.1| transcription termination/antitermination factor NusG [Streptococcus sp. 2_1_36FAA] Length = 178 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I N + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 HVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLNQI 175 >gi|322386605|ref|ZP_08060230.1| transcription antitermination protein NusG [Streptococcus cristatus ATCC 51100] gi|321269278|gb|EFX52213.1| transcription antitermination protein NusG [Streptococcus cristatus ATCC 51100] Length = 178 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKSKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVQEFDL 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG FA++ G + +D ++V + + +FG T E+ +Q+ Sbjct: 126 DVKVGDTVRIIDGAFANYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQI 175 >gi|257462552|ref|ZP_05626963.1| transcription antitermination protein nusG [Fusobacterium sp. D12] gi|317060205|ref|ZP_07924690.1| transcription antitermination protein nusG [Fusobacterium sp. D12] gi|313685881|gb|EFS22716.1| transcription antitermination protein nusG [Fusobacterium sp. D12] Length = 194 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 102/188 (54%), Gaps = 14/188 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FP Sbjct: 7 KRWFMIHTYSGYEKKVKTDLEQKIETLGMKEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66 Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ + ++ +++T V GF+G G +P P+ + E+E+I Sbjct: 67 GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126 Query: 110 V-EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + R F++G+ V V DG F + G V +D E+ +V + + IFGR+TPVE+ Sbjct: 127 IGYEQEVREFHKADFQIGDYVKVLDGAFVNKEGKVAEMDYEQGKVKIMIDIFGRMTPVEV 186 Query: 169 AYNQVEKI 176 +++ VEK+ Sbjct: 187 SFSSVEKM 194 >gi|283769310|ref|ZP_06342210.1| transcription termination/antitermination factor NusG [Bulleidia extructa W1219] gi|283104086|gb|EFC05469.1| transcription termination/antitermination factor NusG [Bulleidia extructa W1219] Length = 196 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 6/177 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 RWY+V Y+ E + +++ RL G+ + I + E + ++ + + FP Sbjct: 19 RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY+ ++ MTD+ ++ +++TP V GF+G G P PV++ E+E I+ ++ Q+ V Sbjct: 79 GYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVV- 137 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F+VG+ V + GPFA+ G + ++++ V ++FGR TP E++Y ++K+ Sbjct: 138 -VDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193 >gi|162447021|ref|YP_001620153.1| transcription antitermination protein [Acholeplasma laidlawii PG-8A] gi|161985128|gb|ABX80777.1| transcription antitermination protein [Acholeplasma laidlawii PG-8A] Length = 182 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFFP 62 RWY++Q YS EK E + R+ G+ + +I +P E + + G+ R+ +P Sbjct: 9 RWYVIQTYSGYEKAVKEDLARRVDSMGMQDYIYQIIVPEETYIEKNKDGKDKEKVRQIYP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++ ++TD + +++TP+V GFLG+ + E I + A + Sbjct: 69 GYVFVEMLVTDDSWFVVRNTPRVTGFLGSSGGGTKPVPLLEEEIRPILLKANVISKPNYE 128 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +G+ V + G F G V VD ++ ++ V++ +FGR TP E+ + Q ++I Sbjct: 129 YLLGKEVQIISGAFEGQIGRVSYVDADQEKMMVDIDVFGRATPTEIDFTQFKEI 182 >gi|148989702|ref|ZP_01821011.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP6-BS73] gi|147924818|gb|EDK75901.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP6-BS73] Length = 183 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180 >gi|110004182|emb|CAK98520.1| putative transcription antitermination nusg transmembrane protein [Spiroplasma citri] Length = 217 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ YS E + + + R+ + +V +I + E V + + G+ + E+ +PG Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQV---------E 111 Y+ I +M D+ ++ +++T V GF+G+ P P+TD E ++++ + Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V FEV + V + G F G V +D K V + +FGR+TP E+ ++ Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 172 QVEKI 176 Q EKI Sbjct: 212 QCEKI 216 >gi|253581636|ref|ZP_04858860.1| transcription antitermination protein nusG [Fusobacterium varium ATCC 27725] gi|251835985|gb|EES64522.1| transcription antitermination protein nusG [Fusobacterium varium ATCC 27725] Length = 199 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 19/192 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+ FP Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGIGEIVTKVLVPEEETIEEVRGKKKTVARKIFP 66 Query: 63 GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ + ++ +++T V GF+G G +P P+ D E+ +I Sbjct: 67 GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVANIFRV 126 Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + E + V + F +G+ V + G FA G V +D E+ +V V + +FGR+ Sbjct: 127 IGYDIPEEEKENKEVLKINFGLGDFVKILGGGFAGHEGKVAEIDMEQRKVKVMIEMFGRM 186 Query: 164 TPVELAYNQVEK 175 TPVE+ +N VEK Sbjct: 187 TPVEVDFNSVEK 198 >gi|15903862|ref|NP_359412.1| transcription antitermination protein NusG [Streptococcus pneumoniae R6] gi|111657098|ref|ZP_01407887.1| hypothetical protein SpneT_02001671 [Streptococcus pneumoniae TIGR4] gi|148985943|ref|ZP_01818996.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP3-BS71] gi|148992157|ref|ZP_01821931.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP9-BS68] gi|148998770|ref|ZP_01826207.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP11-BS70] gi|149007846|ref|ZP_01831442.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP18-BS74] gi|149011858|ref|ZP_01833006.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP19-BS75] gi|149020768|ref|ZP_01835297.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP23-BS72] gi|168492586|ref|ZP_02716729.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC0288-04] gi|237650119|ref|ZP_04524371.1| transcription antitermination protein NusG [Streptococcus pneumoniae CCRI 1974] gi|298254841|ref|ZP_06978427.1| transcription antitermination protein NusG [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501505|ref|YP_003723445.1| transcription antitermination protein NusG [Streptococcus pneumoniae TCH8431/19A] gi|303260785|ref|ZP_07346741.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP-BS293] gi|303263114|ref|ZP_07349043.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS292] gi|303265162|ref|ZP_07351074.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS397] gi|303267720|ref|ZP_07353538.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS457] gi|303270091|ref|ZP_07355800.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS458] gi|15459507|gb|AAL00623.1| Transcription antitermination factor [Streptococcus pneumoniae R6] gi|147755331|gb|EDK62381.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP11-BS70] gi|147760696|gb|EDK67669.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP18-BS74] gi|147763813|gb|EDK70746.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP19-BS75] gi|147921916|gb|EDK73041.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP3-BS71] gi|147929206|gb|EDK80217.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP9-BS68] gi|147930409|gb|EDK81392.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP23-BS72] gi|183573260|gb|EDT93788.1| transcription termination/antitermination factor NusG [Streptococcus pneumoniae CDC0288-04] gi|298237100|gb|ADI68231.1| transcription antitermination protein NusG [Streptococcus pneumoniae TCH8431/19A] gi|302635736|gb|EFL66242.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS292] gi|302638067|gb|EFL68546.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP-BS293] gi|302640373|gb|EFL70811.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS458] gi|302642750|gb|EFL73079.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS457] gi|302645243|gb|EFL75478.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS397] Length = 183 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180 >gi|322388919|ref|ZP_08062511.1| transcription antitermination protein NusG [Streptococcus infantis ATCC 700779] gi|321140302|gb|EFX35815.1| transcription antitermination protein NusG [Streptococcus infantis ATCC 700779] Length = 178 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+K E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKKKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + +G FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 NVEVGQTVRIIEGAFADYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQI 175 >gi|167950492|ref|ZP_02537566.1| NusG antitermination factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 148 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 2/147 (1%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ E+ +P+E VV +R G++ SER+FFPGYVL++ MTD+ +H +KD PKV+GF+G Sbjct: 1 MEDKFGEVLVPTEEVVEMRAGQQRKSERKFFPGYVLVQMEMTDETWHLVKDVPKVLGFIG 60 Query: 91 TGENPS--PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 P+TD E + I+ +V+ V++P V FE GE V V DGPF F+G+V+ VD Sbjct: 61 GYRRSPGRPITDKEADAILQRVQEGVEKPRPKVLFEPGEVVRVVDGPFNDFSGVVEEVDY 120 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175 EKSR+ V V+IFGR TPV+L + QVEK Sbjct: 121 EKSRLKVSVLIFGRSTPVDLEFGQVEK 147 >gi|289167124|ref|YP_003445391.1| transcription antitermination factor [Streptococcus mitis B6] gi|288906689|emb|CBJ21523.1| transcription antitermination factor [Streptococcus mitis B6] Length = 178 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYDMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 EVG+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175 >gi|237821865|ref|ZP_04597710.1| transcription antitermination protein NusG [Streptococcus pneumoniae CCRI 1974M2] gi|303255490|ref|ZP_07341550.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS455] gi|302597550|gb|EFL64636.1| transcription antitermination protein NusG [Streptococcus pneumoniae BS455] Length = 182 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G++ E FP Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKNGKRKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDF 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E+G+ V + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 131 DVEIGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 180 >gi|256545060|ref|ZP_05472427.1| transcription antitermination protein NusG [Anaerococcus vaginalis ATCC 51170] gi|256399263|gb|EEU12873.1| transcription antitermination protein NusG [Anaerococcus vaginalis ATCC 51170] Length = 197 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 5/174 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY+V Y+ E + + I + ++ ++T+P E V V+ K R+ FP Sbjct: 29 PRWYVVHTYTGYENRVKDKIQMMIDNEQNPDII-DVTVPEEEYVEVKNESKKLKTRKLFP 87 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV++K +T++ ++ I++T V GF+G P P+T E+ + +PV ++ Sbjct: 88 GYVMVKMNITNRSWYIIRNTQGVTGFVGPDSKPVPLTKREVRKFGIK----EDKPVLNIN 143 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ + + GPF VK VD +K + + +FGR T ++L++ +E I Sbjct: 144 INVGDNINIIQGPFKDLVAEVKEVDTDKQIIKALIDMFGRDTIIDLSFEDIETI 197 >gi|282889737|ref|ZP_06298276.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500311|gb|EFB42591.1| hypothetical protein pah_c004o099 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 182 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 104/175 (59%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+VQ S+ EKKA +++ G+ L+ + +P E+V V+ G + E+R +P Sbjct: 2 HKWYVVQAISSQEKKAKKNLEEHREHKGMSELIERVVLPIEKVSEVKNGLQKVVEKRLWP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+LIK +TD+ + +K+T V+ FLG G+ P+ +T+ E++ I+ +E Q Sbjct: 62 GYLLIKMTLTDESWSYVKNTIGVVDFLG-GDQPAALTEKEVDEILKDLEDKKQTVTQRHK 120 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 F VG+RV + DG F +F G V V +K R+ V V IFGR T V +L + QVE+I Sbjct: 121 FNVGDRVKIVDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 175 >gi|40786356|dbj|BAD07006.1| transcription anti-termination factor [Onion yellows phytoplasma] Length = 204 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P Sbjct: 30 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 89 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ ++TD+ + +K+TP++ GFLG+ S I + Sbjct: 90 GYVFIQMMITDRSWFVVKNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 149 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G++V + G F+ G V ++D+++ ++ VEV +FGR TPVE+++N ++I Sbjct: 150 NFIGKKVEIISGSFSGQIGQVSSIDDDREKMKVEVDLFGRATPVEISFNDFKEI 203 >gi|125718987|ref|YP_001036120.1| transcription antitermination protein NusG [Streptococcus sanguinis SK36] gi|323350655|ref|ZP_08086316.1| transcription antitermination protein NusG [Streptococcus sanguinis VMC66] gi|125498904|gb|ABN45570.1| Transcription antitermination factor NusG, putative [Streptococcus sanguinis SK36] gi|322123075|gb|EFX94766.1| transcription antitermination protein NusG [Streptococcus sanguinis VMC66] gi|324989882|gb|EGC21825.1| transcription antitermination protein NusG [Streptococcus sanguinis SK353] gi|324992605|gb|EGC24526.1| transcription antitermination protein NusG [Streptococcus sanguinis SK405] gi|324995865|gb|EGC27776.1| transcription antitermination protein NusG [Streptococcus sanguinis SK678] gi|325686704|gb|EGD28730.1| transcription antitermination protein NusG [Streptococcus sanguinis SK72] gi|325688846|gb|EGD30854.1| transcription antitermination protein NusG [Streptococcus sanguinis SK115] gi|325695370|gb|EGD37270.1| transcription antitermination protein NusG [Streptococcus sanguinis SK150] gi|325697311|gb|EGD39197.1| transcription antitermination protein NusG [Streptococcus sanguinis SK160] gi|327460008|gb|EGF06347.1| transcription antitermination protein NusG [Streptococcus sanguinis SK1] gi|327463500|gb|EGF09819.1| transcription antitermination protein NusG [Streptococcus sanguinis SK1057] gi|327467893|gb|EGF13383.1| transcription antitermination protein NusG [Streptococcus sanguinis SK330] gi|327472154|gb|EGF17591.1| transcription antitermination protein NusG [Streptococcus sanguinis SK408] gi|327488598|gb|EGF20398.1| transcription antitermination protein NusG [Streptococcus sanguinis SK1058] gi|328944700|gb|EGG38861.1| transcription antitermination protein NusG [Streptococcus sanguinis SK1087] Length = 178 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I N + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRNILISMGQTVQEFDL 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLSQI 175 >gi|322390410|ref|ZP_08063931.1| transcription antitermination protein NusG [Streptococcus parasanguinis ATCC 903] gi|321142868|gb|EFX38325.1| transcription antitermination protein NusG [Streptococcus parasanguinis ATCC 903] Length = 178 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDL 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 175 >gi|296875634|ref|ZP_06899704.1| transcription termination/antitermination factor NusG [Streptococcus parasanguinis ATCC 15912] gi|312866822|ref|ZP_07727035.1| transcription termination/antitermination factor NusG [Streptococcus parasanguinis F0405] gi|296433364|gb|EFH19141.1| transcription termination/antitermination factor NusG [Streptococcus parasanguinis ATCC 15912] gi|311097605|gb|EFQ55836.1| transcription termination/antitermination factor NusG [Streptococcus parasanguinis F0405] Length = 178 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEIEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVQEFDL 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F + G + +D ++V + + +FG T E+ NQ+ Sbjct: 126 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTVAEVNLNQI 175 >gi|194476830|ref|YP_002049009.1| transcription antitermination protein NusG [Paulinella chromatophora] gi|171191837|gb|ACB42799.1| transcription antitermination protein NusG [Paulinella chromatophora] Length = 228 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFPG 63 WY VQV S+CEKK ++ R G+ + + EI IP + ++K + + E + FPG Sbjct: 46 WYAVQVASSCEKKVKTTLEKRAMTLGVSNRILEIAIPEIPTLKIKKDGSRQSIEEKVFPG 105 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------PSPVTDSEIEHIMNQVEA 112 YVLI+ ++ + I+ TP VI F+G P P++ E++ I + Sbjct: 106 YVLIRMILDEDTMMAIRSTPHVINFVGNEAKRVNRRIRGHIDPKPLSRQEVDRIFKRATQ 165 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++ + + G+R+ V GPF F G V V E+S++ + IFGR TPVEL + Q Sbjct: 166 --KKNLVKSDLDEGDRIVVIAGPFKDFQGEVIEVSGERSKLKALLSIFGRETPVELEFAQ 223 Query: 173 VEK 175 + K Sbjct: 224 ISK 226 >gi|297571949|ref|YP_003697723.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM 20595] gi|296932296|gb|ADH93104.1| NusG antitermination factor [Arcanobacterium haemolyticum DSM 20595] Length = 288 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ Y+ EK+ + R+ ++ + +I +P E V V+KG + R PG Sbjct: 101 RWYVLHTYAGYEKRVKHDLETRMHSLDMEDYIFQIEVPMEEVFEVKKGSRKLVSRVRIPG 160 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR------- 116 Y LI+ MTD + ++DT V GF+G G P +T E+ ++ + Sbjct: 161 YALIRMKMTDDSWRVVQDTNGVTGFVGNGRTPVALTPDEVVQMLTPIVEKEAAVAVETAG 220 Query: 117 -------PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 V + VGE V ++ P+ + VD R+ V + + G+ TPV+L+ Sbjct: 221 KKVGNVGVTLEVEYSVGEIVTLTTEPWMGMPATISQVDAVNQRLTVLMTLVGQETPVDLS 280 Query: 170 YNQVEKI 176 + QV+K+ Sbjct: 281 FGQVKKM 287 >gi|262067338|ref|ZP_06026950.1| transcription termination/antitermination factor NusG [Fusobacterium periodonticum ATCC 33693] gi|291378901|gb|EFE86419.1| transcription termination/antitermination factor NusG [Fusobacterium periodonticum ATCC 33693] Length = 193 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + V++ I++T V GF+G G +P P+ D E+++I N + Sbjct: 68 YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|257470018|ref|ZP_05634110.1| transcription antitermination protein nusG [Fusobacterium ulcerans ATCC 49185] gi|317064243|ref|ZP_07928728.1| transcription antitermination protein nusG [Fusobacterium ulcerans ATCC 49185] gi|313689919|gb|EFS26754.1| transcription antitermination protein nusG [Fusobacterium ulcerans ATCC 49185] Length = 199 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 19/192 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ YS EKK + ++ G+ +VT++ +P E + +G+K R+ FP Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGIGDIVTKVLVPEEETIEEVRGKKKTVARKIFP 66 Query: 63 GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ + ++ +++T V GF+G G +P P+ D E+ +I Sbjct: 67 GYVMLEMVATREESEDGINFRVDSNAWYVVRNTNGVTGFVGVGSDPIPMEDDEVLNIFRV 126 Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + E + V + F +GE V + G FA G V +D E+ +V V + +FGR+ Sbjct: 127 IGYDIPEEEKENKEVVKINFGLGEFVKILGGGFAGHEGKVAEIDMEQKKVKVMIEMFGRM 186 Query: 164 TPVELAYNQVEK 175 TPVE+ +N VEK Sbjct: 187 TPVEVDFNSVEK 198 >gi|289422487|ref|ZP_06424330.1| transcription termination/antitermination factor NusG [Peptostreptococcus anaerobius 653-L] gi|289157059|gb|EFD05681.1| transcription termination/antitermination factor NusG [Peptostreptococcus anaerobius 653-L] Length = 180 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 +WY+V YS E K +I + G++ ++ ++ +P+E VV+ K ++ ++R+ FP Sbjct: 8 KWYVVHTYSGHENKVKTTIENTVKNRGMEDIIEQVIVPTEEVVTTTKTGKEKLTQRKVFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV++K MTD+ ++ +++T V GF+G G P P+T E+ M A + + Sbjct: 68 SYVIVKMEMTDESWYIVRNTKGVTGFVGPGSKPVPLTVDEV-KAMGIELPASKIISGEID 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V G F G V +V+ EK V V V FGR V L +EK+ Sbjct: 127 LAPGDTVKVISGAFVDNVGEVDDVNIEKREVKVYVNAFGRKALVTLGLENIEKV 180 >gi|257452912|ref|ZP_05618211.1| transcription antitermination protein nusG [Fusobacterium sp. 3_1_5R] gi|257466707|ref|ZP_05631018.1| transcription antitermination protein nusG [Fusobacterium gonidiaformans ATCC 25563] gi|315917859|ref|ZP_07914099.1| transcription antitermination protein nusG [Fusobacterium gonidiaformans ATCC 25563] gi|317059454|ref|ZP_07923939.1| transcription antitermination protein nusG [Fusobacterium sp. 3_1_5R] gi|313685130|gb|EFS21965.1| transcription antitermination protein nusG [Fusobacterium sp. 3_1_5R] gi|313691734|gb|EFS28569.1| transcription antitermination protein nusG [Fusobacterium gonidiaformans ATCC 25563] Length = 196 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 16/190 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW+++ YS EKK + ++ G+ +V++I +P E+ + +G++ R+ FP Sbjct: 7 KRWFMIHTYSGYEKKVKTDLEQKIETLGMTEIVSKILVPEEKSTEIVRGKEKVVFRKIFP 66 Query: 63 GYVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ + ++ +++T V GF+G G +P P+ + E+E+I Sbjct: 67 GYVMLEMTAVREESDEGINYKVDSDAWYVVRNTNGVTGFVGVGSDPIPMEEHEVENIFRV 126 Query: 110 V---EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + E ++ + FEVG+ V V DG F + G V +D E+ +V + + IFGR+TPV Sbjct: 127 IGYKEEVREQQLYKADFEVGDYVKVLDGGFVNKEGRVAEMDYEQGKVKIMIDIFGRMTPV 186 Query: 167 ELAYNQVEKI 176 E++++ VEK+ Sbjct: 187 EVSFSSVEKM 196 >gi|291166888|gb|EFE28934.1| transcription termination/antitermination factor NusG [Filifactor alocis ATCC 35896] Length = 181 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 93/173 (53%), Gaps = 4/173 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+V YS E K +I + ++ ++ +++P E +V + G+K R+ FPG Sbjct: 8 KWYVVHTYSGHENKVKATIEKAVQNRNMEDIIPRVSVPVEEIVEEKNGKKHTRYRKIFPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y L+K ++TD+ ++ +++T V GF+G P P+T+ E ++N + + F Sbjct: 68 YCLVKMIVTDESWYVVRNTKGVTGFVGPNSKPIPLTEQE---VINMGLEEEVPVIYKIDF 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG-RVTPVELAYNQVEK 175 G+RV + G F+ V ++ EK ++V +FG R T V++ +Q+EK Sbjct: 125 AEGDRVIIKGGAFSGLRATVVSLHPEKGMAKIKVYMFGDRETLVDIEVSQLEK 177 >gi|322373828|ref|ZP_08048363.1| transcription termination/antitermination factor NusG [Streptococcus sp. C150] gi|321277200|gb|EFX54270.1| transcription termination/antitermination factor NusG [Streptococcus sp. C150] Length = 179 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F G V +D ++V + + +FG T EL Q+ Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEID--NNKVKIMINMFGSETAAELELYQI 176 >gi|241895135|ref|ZP_04782431.1| transcriptional antiterminator NusG [Weissella paramesenteroides ATCC 33313] gi|241871631|gb|EER75382.1| transcriptional antiterminator NusG [Weissella paramesenteroides ATCC 33313] Length = 184 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 4/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ Y+ E + ++ R+ G+ + + +P + V + G + FP Sbjct: 8 KQWYVLHTYAGYENRVKSNLESRIETMGMTDYIFRVLVPEQEVEVEKDGETKIVKENDFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GY L++ +MTD+ ++ +++TP V GFL G G P P+ E++ ++ ++ ++ Sbjct: 68 GYALVEMIMTDEAWYVVRNTPGVTGFLGSHGGGSKPVPLLPEEVDDMLARMNLVERKVEH 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VS FA G + +D+E V + + +FGR TP ++++N ++ + Sbjct: 128 LDVVVGDSVDVVSG-SFAGQEGEITAIDDEHQEVTILINMFGRDTPTQISFNDIKPV 183 >gi|225867754|ref|YP_002743702.1| transcription antitermination factor [Streptococcus equi subsp. zooepidemicus] gi|225869698|ref|YP_002745645.1| transcription antitermination factor [Streptococcus equi subsp. equi 4047] gi|225699102|emb|CAW92268.1| transcription antitermination factor [Streptococcus equi subsp. equi 4047] gi|225701030|emb|CAW97809.1| transcription antitermination factor [Streptococcus equi subsp. zooepidemicus] Length = 186 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 12 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD + +++TP V GF+G+ N S T E I + + Q Sbjct: 72 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 132 NIKEGDMVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 181 >gi|329121897|ref|ZP_08250511.1| transcription antitermination factor NusG [Dialister micraerophilus DSM 19965] gi|327467694|gb|EGF13190.1| transcription antitermination factor NusG [Dialister micraerophilus DSM 19965] Length = 207 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LI+ + D ++ +++TP V GF+GT P P++D E E I + ++ + Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +VG+++ ++ GPFA + +V V ++K V ++ FG T +EL Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199 >gi|218960795|ref|YP_001740570.1| transcription antitermination protein NusG [Candidatus Cloacamonas acidaminovorans] gi|167729452|emb|CAO80363.1| transcription antitermination protein NusG [Candidatus Cloacamonas acidaminovorans] Length = 177 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 1/175 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K +I L+ + L+ V + +P + +R+G+K+ +++ F Sbjct: 1 MKWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFT 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV+++A MT ++ I V FLG + E + + V+ Sbjct: 61 SYVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVY 120 Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V GPF F GIV+ E +++ +EV +FGR TPVEL +QVE I Sbjct: 121 SYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVELI 175 >gi|312865546|ref|ZP_07725773.1| transcription termination/antitermination factor NusG [Streptococcus downei F0415] gi|311099064|gb|EFQ57281.1| transcription termination/antitermination factor NusG [Streptococcus downei F0415] Length = 180 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 3/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMTENILRVEIPTQTVNVEKNGKTKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 GYVL++ VMTD + +++TP V GF+G+ N S T E I + + Q V Sbjct: 67 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVEVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V + DG F G V + E ++V + + +FG T E+ Q+ +I Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVIEI--ENNKVKIMINMFGSETAAEVELYQIAEI 179 >gi|313892111|ref|ZP_07825706.1| transcription termination/antitermination factor NusG [Dialister microaerophilus UPII 345-E] gi|313119466|gb|EFR42663.1| transcription termination/antitermination factor NusG [Dialister microaerophilus UPII 345-E] Length = 207 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K E++ ++ G+D + +I +P V+ G K R+ FPG Sbjct: 37 RWYVIHTYSGYENKVKETLTRKVHSMGMDDTILQIMLPMHNEEEVKDGEKRVVARKVFPG 96 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LI+ + D ++ +++TP V GF+GT P P++D E E I + ++ + Sbjct: 97 YLLIQMEVNDHSWYVVRNTPGVTGFVGTTTKPIPLSDEEAERI---IAGDNKKVSVTTEA 153 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +VG+++ ++ GPFA + +V V ++K V ++ FG T +EL Sbjct: 154 KVGDKIRITQGPFAEHSAVVLEVSDDKKLVIADISTFGNTTKIELE 199 >gi|163752685|ref|ZP_02159848.1| transcription antitermination protein NusG [Shewanella benthica KT99] gi|161327425|gb|EDP98648.1| transcription antitermination protein NusG [Shewanella benthica KT99] Length = 161 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + ++++ + ++H EI +P+E VV +R G++ SER+FFP Sbjct: 9 KRWYVVQAFSGYEGRVLKTLNEYIQMYKMEHFFGEILVPTEEVVEMRAGQRRKSERKFFP 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYVL++ M D+ +H +K P+V+GF+G + P+P++D E + I+ +++ + P V Sbjct: 69 GYVLVQMEMNDESWHLVKSVPRVMGFIGGTSDRPAPISDVEADRILQRLQETTESPTHRV 128 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 FE GE V V+DGPFA FNG V+ VD EK+RV Sbjct: 129 MFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVK 161 >gi|262038204|ref|ZP_06011598.1| transcription termination/antitermination factor NusG [Leptotrichia goodfellowii F0264] gi|261747785|gb|EEY35230.1| transcription termination/antitermination factor NusG [Leptotrichia goodfellowii F0264] Length = 205 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 15/189 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS EKK + R+ L V I +P E V+ ++G+ V R+ F Sbjct: 16 EKKWYIIHTYSGYEKKVATDLEKRIESLNLTDRVFRILVPEEEVLEEKRGKMVKVPRKLF 75 Query: 62 PGYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 P YV+++ + + ++ I++T V GF+G G +P P++D E ++++ Sbjct: 76 PSYVMVEMLSVKEENDLGLGYRVDSEAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLS 135 Query: 109 Q--VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + + ++ E+GE+V V F G V +D E RV V + +FGR+TPV Sbjct: 136 KIGINGFENENKFNIDVEIGEKVIVKKDSFLDQEGEVAEIDYEHGRVKVLLEVFGRLTPV 195 Query: 167 ELAYNQVEK 175 E YN+++K Sbjct: 196 EFEYNEIQK 204 >gi|258646899|ref|ZP_05734368.1| transcription termination/antitermination factor NusG [Dialister invisus DSM 15470] gi|260404338|gb|EEW97885.1| transcription termination/antitermination factor NusG [Dialister invisus DSM 15470] Length = 206 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 3/166 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ YS E K +++ ++ G+D + +I +P V+ G K R+ FPG Sbjct: 35 RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LI+ + D+ ++ +++TP V GF+GT P P++D E + I +E ++ + Sbjct: 95 YLLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRI---IEGKDKKQTAKTDA 151 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +VG+ + ++ GPFA + +V +V +++S++ ++ FG T +EL Sbjct: 152 KVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197 >gi|288904354|ref|YP_003429575.1| transcription antitermination factor [Streptococcus gallolyticus UCN34] gi|288731079|emb|CBI12625.1| transcription antitermination factor [Streptococcus gallolyticus UCN34] Length = 179 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG FA G V + E ++V + + +FG T EL Q+ Sbjct: 127 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 176 >gi|148284111|ref|YP_001248201.1| transcription antitermination protein [Orientia tsutsugamushi str. Boryong] gi|146739550|emb|CAM79279.1| transcription antitermination protein [Orientia tsutsugamushi str. Boryong] Length = 184 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI++ S E ++I + ++ G+ H EI IP +VV +++G+ +N ++ Sbjct: 8 AYQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTM 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+LIK M D+V ++ K+ F G VT+ E++ +M Q+E Q P Sbjct: 67 PGYILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLE 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +++GE V V+DGPF +F G ++ VD K + + + IF R T + + ++QVEK+ Sbjct: 127 KYQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181 >gi|161870928|ref|YP_001600108.1| transcription antitermination protein [Neisseria meningitidis 053442] gi|161596481|gb|ABX74141.1| transcription antitermination protein [Neisseria meningitidis 053442] Length = 148 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 + +I +P E+VV +R GRK SER+ +PGYVL++ MTD +H +K TP+V GF+G Sbjct: 1 MGDYFGQILVPVEKVVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIG 60 Query: 91 T-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 P P++ E E I+ QV+ +++P V FEVG++V V++GPFA FNG+V+ V+ E Sbjct: 61 GRANRPMPISQREAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYE 120 Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++++ V V IFGR TPVEL ++QVEKI Sbjct: 121 RNKLRVSVQIFGRETPVELEFSQVEKI 147 >gi|22538197|ref|NP_689048.1| transcription antitermination protein NusG [Streptococcus agalactiae 2603V/R] gi|25012055|ref|NP_736450.1| transcription antitermination protein NusG [Streptococcus agalactiae NEM316] gi|76786867|ref|YP_330590.1| transcription antitermination protein NusG [Streptococcus agalactiae A909] gi|76797850|ref|ZP_00780114.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae 18RS21] gi|77406157|ref|ZP_00783229.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae H36B] gi|77409156|ref|ZP_00785869.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae COH1] gi|77411825|ref|ZP_00788159.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae CJB111] gi|77412987|ref|ZP_00789190.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae 515] gi|22535108|gb|AAN00921.1|AE014285_3 transcription antitermination protein NusG [Streptococcus agalactiae 2603V/R] gi|24413598|emb|CAD47676.1| Unknown [Streptococcus agalactiae NEM316] gi|76561924|gb|ABA44508.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae A909] gi|76586810|gb|EAO63304.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae 18RS21] gi|77160999|gb|EAO72107.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae 515] gi|77162102|gb|EAO73079.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae CJB111] gi|77172240|gb|EAO75396.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae COH1] gi|77175237|gb|EAO78034.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae H36B] gi|319746037|gb|EFV98316.1| transcription termination/antitermination factor NusG [Streptococcus agalactiae ATCC 13813] Length = 179 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T EL QV Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMINMFGSETQAELELYQV 176 >gi|195977307|ref|YP_002122551.1| transcription antitermination protein NusG [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974012|gb|ACG61538.1| transcription antitermination protein NusG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 181 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD + +++TP V GF+G+ N S T E I + + Q Sbjct: 67 GYVLVEMVMTDDAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 127 NIKEGDVVQIIDGAFIGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 176 >gi|325972673|ref|YP_004248864.1| NusG antitermination factor [Spirochaeta sp. Buddy] gi|324027911|gb|ADY14670.1| NusG antitermination factor [Spirochaeta sp. Buddy] Length = 186 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSR-SGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M WY+V YS E+K I + + T++ +P E VV V+ G + + +R+ Sbjct: 1 MAKGWYVVHTYSGYEQKIERIINKMRETDTDFALVCTDVKVPFETVVEVKDGVRRDVKRK 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIG------FLGTGENPSPVTDSEIEHIMNQVEAA 113 PGY+L++ + D + T K I P P+ +E++ + + Sbjct: 61 ILPGYILVELDLPDHSWKTWCSQVKRIQGVTGFVTPNDSVKPQPLNAAEVKSLFQKTGDL 120 Query: 114 VQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V F +GE+V + +GPF SF G+++ V+ EK+R+ V V IFGR TPVE+ + Sbjct: 121 PAEKVFKPKQSFSIGEQVRIIEGPFDSFTGVIEEVNLEKARMRVSVGIFGRSTPVEVDFL 180 Query: 172 QVEKIV 177 QVEKI+ Sbjct: 181 QVEKIL 186 >gi|55820313|ref|YP_138755.1| transcription antitermination protein NusG [Streptococcus thermophilus LMG 18311] gi|55822203|ref|YP_140644.1| transcription antitermination protein NusG [Streptococcus thermophilus CNRZ1066] gi|116627154|ref|YP_819773.1| transcription antitermination protein NusG [Streptococcus thermophilus LMD-9] gi|228476487|ref|ZP_04061177.1| transcription termination/antitermination factor NusG [Streptococcus salivarius SK126] gi|312864059|ref|ZP_07724295.1| transcription termination/antitermination factor NusG [Streptococcus vestibularis F0396] gi|322517533|ref|ZP_08070402.1| transcription termination/antitermination factor NusG [Streptococcus vestibularis ATCC 49124] gi|55736298|gb|AAV59940.1| transcription antitermination factor [Streptococcus thermophilus LMG 18311] gi|55738188|gb|AAV61829.1| transcription antitermination factor [Streptococcus thermophilus CNRZ1066] gi|116100431|gb|ABJ65577.1| Transcription antiterminator [Streptococcus thermophilus LMD-9] gi|228251908|gb|EEK10954.1| transcription termination/antitermination factor NusG [Streptococcus salivarius SK126] gi|311100472|gb|EFQ58679.1| transcription termination/antitermination factor NusG [Streptococcus vestibularis F0396] gi|312277631|gb|ADQ62288.1| Transcription antitermination protein nusG [Streptococcus thermophilus ND03] gi|322123793|gb|EFX95367.1| transcription termination/antitermination factor NusG [Streptococcus vestibularis ATCC 49124] Length = 179 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F G V + E ++V + + +FG T EL Q+ Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKIMINMFGSETAAELELYQI 176 >gi|297620824|ref|YP_003708961.1| Transcription antitermination protein nusG [Waddlia chondrophila WSU 86-1044] gi|297376125|gb|ADI37955.1| Transcription antitermination protein nusG [Waddlia chondrophila WSU 86-1044] Length = 180 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 2/175 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W++V V S EKK ++I + G+ L+ + +P E + V+KG++ E+R +P Sbjct: 2 HNWFVVHVLSAQEKKVKKAIEEQRDLKGMTDLIDIVLLPVENISEVKKGQQKVVEKRMWP 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+L+K +TD+ + I D P VIGFLG G+ P+P+T E++ I+ +E ++ V Sbjct: 62 GYLLVKMTLTDESWGYICDVPGVIGFLG-GDQPTPLTPQEVDEILQDIEEKKEKVVQKHQ 120 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 FEVG+ V + DG F +F G V +V +K R+ V+V IFGR T V +L + QVE++ Sbjct: 121 FEVGDNVKIIDGVFVNFVGTVTDVQPDKGRLSVQVSIFGRETQVDDLEFVQVEEV 175 >gi|253752634|ref|YP_003025775.1| transcription antitermination factor [Streptococcus suis SC84] gi|253754460|ref|YP_003027601.1| transcription antitermination factor [Streptococcus suis P1/7] gi|253756393|ref|YP_003029533.1| transcription antitermination factor [Streptococcus suis BM407] gi|330833594|ref|YP_004402419.1| transcription antitermination factor [Streptococcus suis ST3] gi|251816923|emb|CAZ52572.1| transcription antitermination factor [Streptococcus suis SC84] gi|251818857|emb|CAZ56700.1| transcription antitermination factor [Streptococcus suis BM407] gi|251820706|emb|CAR47468.1| transcription antitermination factor [Streptococcus suis P1/7] gi|329307817|gb|AEB82233.1| transcription antitermination factor [Streptococcus suis ST3] Length = 179 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q + Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 127 DVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176 >gi|322412789|gb|EFY03697.1| transcription antitermination protein NusG [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 179 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q V Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLLLNMFGSETVAEVELYQI 176 >gi|237738810|ref|ZP_04569291.1| transcription antitermination protein nusG [Fusobacterium sp. 2_1_31] gi|229423913|gb|EEO38960.1| transcription antitermination protein nusG [Fusobacterium sp. 2_1_31] Length = 193 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ L +VT I +P E + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKVGTLQLRDVVTNILVPEEETTEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + V++ I++T V GF+G G +P P+ D E+++I N + Sbjct: 68 YVMLEMEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|329116684|ref|ZP_08245401.1| transcription termination/antitermination factor NusG [Streptococcus parauberis NCFD 2020] gi|326907089|gb|EGE54003.1| transcription termination/antitermination factor NusG [Streptococcus parauberis NCFD 2020] Length = 179 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLLRAQTYNMLDNILRVEIPTQTVNVEKNGQSKEIEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T + I + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEDEIRAILLSMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 127 NIKVGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETIAEVELYQI 176 >gi|222153827|ref|YP_002563004.1| transcription antitermination protein NusG [Streptococcus uberis 0140J] gi|222114640|emb|CAR43677.1| transcription antitermination factor [Streptococcus uberis 0140J] Length = 180 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTVDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETLAEVELYQI 176 >gi|237736026|ref|ZP_04566507.1| transcription antitermination protein nusG [Fusobacterium mortiferum ATCC 9817] gi|229421840|gb|EEO36887.1| transcription antitermination protein nusG [Fusobacterium mortiferum ATCC 9817] Length = 200 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 19/192 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ YS EKK + ++ G+ +VT+I +P E + +G+K R+ FP Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLGMGDIVTKILVPEEETIEEVRGKKKTVARKIFP 66 Query: 63 GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ + ++ +++T V GF+G G +P P+ D E+++I Sbjct: 67 GYVMLEMVATREESNEGINFRVDSDAWYVVRNTNGVTGFVGVGSDPIPMEDEEVKNIFEV 126 Query: 110 V------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + E + V + F VG+ V V G FA G V +D E + V + +FGR+ Sbjct: 127 IGLDLTEEEKELKEVIKINFAVGDYVKVLKGGFADQEGKVAEIDMEHKKAKVMIEMFGRM 186 Query: 164 TPVELAYNQVEK 175 TPVE+ ++ V+K Sbjct: 187 TPVEVDFDSVQK 198 >gi|330444705|ref|YP_004377691.1| transcription termination/antitermination factor NusG [Chlamydophila pecorum E58] gi|328807815|gb|AEB41988.1| transcription termination/antitermination factor NusG [Chlamydophila pecorum E58] Length = 182 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMAEFIQEIILPSENVMEVKKGEHKVVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD + +K T V+ FLG G P +++ E+ I+ +E V F Sbjct: 63 YLLVKMHLTDDSWLYVKSTAGVVEFLG-GAKPVALSEDEVRDILTDMEEKKAGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 EVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|24380295|ref|NP_722250.1| transcription antitermination protein NusG [Streptococcus mutans UA159] gi|290579732|ref|YP_003484124.1| putative transcription antitermination factor [Streptococcus mutans NN2025] gi|24378309|gb|AAN59556.1|AE015019_1 putative transcription antitermination factor [Streptococcus mutans UA159] gi|254996631|dbj|BAH87232.1| putative transcription antitermination factor [Streptococcus mutans NN2025] Length = 178 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 6 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEVEENRFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q + Sbjct: 66 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTVDIIDT 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T EL Q+ Sbjct: 126 NIKEGDVVQIIDGAFVGQEGRVVEI--ENNKVKIMINMFGAETQAELELYQI 175 >gi|325977351|ref|YP_004287067.1| transcription antitermination protein nusG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177279|emb|CBZ47323.1| Transcription antitermination protein nusG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 183 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG FA G V + E ++V + + +FG T EL Q+ Sbjct: 131 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180 >gi|254429258|ref|ZP_05042965.1| transcription termination/antitermination factor NusG [Alcanivorax sp. DG881] gi|196195427|gb|EDX90386.1| transcription termination/antitermination factor NusG [Alcanivorax sp. DG881] Length = 150 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 4/149 (2%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ L EI +P+E VV ++ G+K SER+FFPGYVL++ M D +H IK+TPKV+GF+G Sbjct: 1 MEELFGEILVPTEEVVEIKGGQKRKSERKFFPGYVLVQMEMCDDSWHLIKETPKVMGFIG 60 Query: 91 ----TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146 SP+T E + I+ +++ AV++P FE GE V V+DGPFA FNG+++ V Sbjct: 61 EDPKNPGRVSPITQKEADAILRRMDDAVEKPKPKTLFEAGEVVRVNDGPFADFNGVIEEV 120 Query: 147 DEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 NYEKSRLQVAVMIFGRSTPVELEFGQVEK 149 >gi|294781917|ref|ZP_06747249.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 1_1_41FAA] gi|294481728|gb|EFG29497.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 1_1_41FAA] Length = 193 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ L +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKIGTLQLRDVVTNILVPEEESIEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + V++ I++T V GF+G G +P P+ D E+++I N + Sbjct: 68 YVMLEIEATREENENGISYKVDPDVWYIIRNTNGVTGFVGVGSDPIPMEDDEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GMDTSKETIKLDFAEGDFVKILKGSFIDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|313890368|ref|ZP_07823999.1| transcription termination/antitermination factor NusG [Streptococcus pseudoporcinus SPIN 20026] gi|313121211|gb|EFR44319.1| transcription termination/antitermination factor NusG [Streptococcus pseudoporcinus SPIN 20026] Length = 204 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 31 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNIEKNGQTKEVEENRFP 90 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q V Sbjct: 91 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILLSMGQTIDVFDT 150 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 151 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLTLNMFGSETIAEVELYQI 200 >gi|306830387|ref|ZP_07463557.1| transcription termination/antitermination factor NusG [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427412|gb|EFM30514.1| transcription termination/antitermination factor NusG [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 215 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 43 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 102 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 162 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG FA G V + E ++V + + +FG T EL Q+ Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 212 >gi|15835611|ref|NP_300135.1| transcription antitermination protein NusG [Chlamydophila pneumoniae J138] gi|16752968|ref|NP_445241.1| transcription antitermination protein NusG [Chlamydophila pneumoniae AR39] gi|18203670|sp|Q9Z9A5|NUSG_CHLPN RecName: Full=Transcription antitermination protein nusG gi|7189614|gb|AAF38507.1| transcription antitermination protein NusG [Chlamydophila pneumoniae AR39] gi|8978449|dbj|BAA98286.1| transcriptional antitermination [Chlamydophila pneumoniae J138] Length = 182 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 EVG RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 EVGSRVKINDGVFVNFIGTVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|15674369|ref|NP_268543.1| transcription antitermination protein NusG [Streptococcus pyogenes M1 GAS] gi|19745330|ref|NP_606466.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS8232] gi|21909663|ref|NP_663931.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS315] gi|71909952|ref|YP_281502.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS5005] gi|139473014|ref|YP_001127729.1| transcription antitermination protein NusG [Streptococcus pyogenes str. Manfredo] gi|57014085|sp|P68893|NUSG_STRP1 RecName: Full=Transcription antitermination protein nusG gi|57014086|sp|P68894|NUSG_STRP3 RecName: Full=Transcription antitermination protein nusG gi|57014087|sp|P68895|NUSG_STRP8 RecName: Full=Transcription antitermination protein nusG gi|57015406|sp|Q5XE43|NUSG_STRP6 RecName: Full=Transcription antitermination protein nusG gi|13621457|gb|AAK33264.1| putative transcription antitermination factor [Streptococcus pyogenes M1 GAS] gi|19747432|gb|AAL96965.1| putative transcription antitermination factor [Streptococcus pyogenes MGAS8232] gi|21903845|gb|AAM78734.1| putative transcription antitermination factor [Streptococcus pyogenes MGAS315] gi|56403933|dbj|BAD77788.1| hypothetical TRANSCRIPTION ANTITERMINATION PROTEIN [Streptococcus dysgalactiae subsp. equisimilis] gi|71852734|gb|AAZ50757.1| transcription antitermination protein [Streptococcus pyogenes MGAS5005] gi|134271260|emb|CAM29476.1| transcription antitermination factor [Streptococcus pyogenes str. Manfredo] Length = 179 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q V Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 176 >gi|150008879|ref|YP_001303622.1| transcription anti-termination protein [Parabacteroides distasonis ATCC 8503] gi|255014707|ref|ZP_05286833.1| transcription anti-termination protein [Bacteroides sp. 2_1_7] gi|256841127|ref|ZP_05546634.1| transcription termination/antitermination factor NusG [Parabacteroides sp. D13] gi|262383752|ref|ZP_06076888.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_33B] gi|298375892|ref|ZP_06985848.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_19] gi|301311924|ref|ZP_07217846.1| transcription termination/antitermination factor NusG [Bacteroides sp. 20_3] gi|149937303|gb|ABR44000.1| transcription anti-termination protein [Parabacteroides distasonis ATCC 8503] gi|256736970|gb|EEU50297.1| transcription termination/antitermination factor NusG [Parabacteroides sp. D13] gi|262294650|gb|EEY82582.1| transcription termination/antitermination factor NusG [Bacteroides sp. 2_1_33B] gi|298266929|gb|EFI08586.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_19] gi|300830026|gb|EFK60674.1| transcription termination/antitermination factor NusG [Bacteroides sp. 20_3] Length = 180 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 ++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + P Sbjct: 6 KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121 GYVL++A + +V H +++ P VIGFLG + P P+ +E+ I+ V+ Q+ + Sbjct: 66 GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDTPVPLRPAEVNRILGTVDELQEQQEDLDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V ++ GPF+ F GI++ V+ EK ++ V V +FGR TP+EL Y QVEK Sbjct: 126 QFYVGESVKITFGPFSGFTGIIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179 >gi|306832628|ref|ZP_07465767.1| transcription termination/antitermination factor NusG [Streptococcus bovis ATCC 700338] gi|304425236|gb|EFM28363.1| transcription termination/antitermination factor NusG [Streptococcus bovis ATCC 700338] Length = 215 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 43 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 102 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 103 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVIDT 162 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG FA G V + E ++V + + +FG T EL Q+ Sbjct: 163 NIKPGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 212 >gi|313896787|ref|ZP_07830335.1| transcription termination/antitermination factor NusG [Selenomonas sp. oral taxon 137 str. F0430] gi|320530078|ref|ZP_08031148.1| transcription termination/antitermination factor NusG [Selenomonas artemidis F0399] gi|312974704|gb|EFR40171.1| transcription termination/antitermination factor NusG [Selenomonas sp. oral taxon 137 str. F0430] gi|320137511|gb|EFW29423.1| transcription termination/antitermination factor NusG [Selenomonas artemidis F0399] Length = 183 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSDMLFNVVVPVEDELEVKDGKEKVVPRKVFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + P Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRAKVA 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + G F + G V ++D +RV V++ TP+++ +QVE I Sbjct: 136 VGDNVRIVSGAFEDYAGKVISIDSAGARVQVDIE----GTPIDIEIDQVELI 183 >gi|154491726|ref|ZP_02031352.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC 43184] gi|218264360|ref|ZP_03478217.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii DSM 18315] gi|154087967|gb|EDN87012.1| hypothetical protein PARMER_01337 [Parabacteroides merdae ATCC 43184] gi|218222058|gb|EEC94708.1| hypothetical protein PRABACTJOHN_03908 [Parabacteroides johnsonii DSM 18315] Length = 180 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 ++Y+++ S E K E + L + L V+++ IP+E+ +VR G+KV ER + P Sbjct: 6 KKFYVLRAISGKENKVREYLEAELKNTDLGEYVSQVLIPTEKTFTVRNGKKVMKERAYLP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-AVQRPVSSV 121 GYVL++A + +V H +++ P VIGFLG +NP P+ +E+ I+ V+ Q+ + Sbjct: 66 GYVLVEAALVGEVAHRLRNIPNVIGFLGGSDNPVPLRPAEVSRILGTVDELQEQQDDLDI 125 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VGE V ++ GPF F G+++ V+ EK ++ V V +FGR TP+EL Y QVEK Sbjct: 126 QFYVGENVKITFGPFNGFTGVIEEVNAEKKKLKVMVKVFGRKTPLELGYMQVEK 179 >gi|298372192|ref|ZP_06982182.1| transcription termination/antitermination factor NusG [Bacteroidetes oral taxon 274 str. F0058] gi|298275096|gb|EFI16647.1| transcription termination/antitermination factor NusG [Bacteroidetes oral taxon 274 str. F0058] Length = 186 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSG-LDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+++ S EK+ E I L + G L V+++ IP+ERV VR G+KV ER F P Sbjct: 7 KWYVLRAMSGKEKQVKEYIDIELEKGGELSKYVSQVVIPTERVYVVRNGKKVIKERTFLP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRP 117 GYVLI+ +T ++ +++ P V+GFLG E+P E+ ++ V++ + P Sbjct: 67 GYVLIEVALTREISGWLRNVPNVLGFLGVNESPGNYQPIPLRSQEVTRLLGTVDSLDENP 126 Query: 118 VSSVF-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + VGE V V GPF F G+V+ V EK R+ V V IFGR T +EL + QVEK Sbjct: 127 EELLEPYLVGETVRVITGPFNGFTGVVEEVSNEKRRMKVNVKIFGRNTTLELGFMQVEK 185 >gi|42527927|ref|NP_973025.1| transcription antitermination protein NusG [Treponema denticola ATCC 35405] gi|41818972|gb|AAS12944.1| transcription antitermination protein NusG [Treponema denticola ATCC 35405] gi|325474848|gb|EGC78034.1| transcription antitermination protein NusG [Treponema denticola F0402] Length = 185 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 9/185 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+ YS E K +I + + + VT+I IP E V+ + G+K N +R+ Sbjct: 1 MAKAWYILHTYSGYENKIERTIRTLIEKGIISADFVTDIKIPEELVIENKGGKKRNVKRK 60 Query: 60 FFPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113 F PGY+L++ + D + + I+ V GFLGT P P++ E + I+ + Sbjct: 61 FLPGYMLVEMNLPDLGWKSVCSEIRKIQGVTGFLGTAGNEKPQPISPDEAKEILQKTGEI 120 Query: 114 VQRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 V F G+ V + +G FASF G++ V +K+++ V V IFGR TPVE+ + Sbjct: 121 KGDKNIRVIQNFSEGQHVKIIEGAFASFTGVIDEVMADKNKLRVMVAIFGRTTPVEVEMS 180 Query: 172 QVEKI 176 Q E I Sbjct: 181 QAEII 185 >gi|292670290|ref|ZP_06603716.1| transcription antitermination factor NusG [Selenomonas noxia ATCC 43541] gi|292648021|gb|EFF65993.1| transcription antitermination factor NusG [Selenomonas noxia ATCC 43541] Length = 183 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + P Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRTKVS 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V ++ G F + G + ++D RV V+V TP+++ +QVE I Sbjct: 136 VGDTVRIASGAFEDYAGKITSIDSSGLRVQVDVE----GTPLDVEIDQVELI 183 >gi|28895041|ref|NP_801391.1| transcription antitermination protein NusG [Streptococcus pyogenes SSI-1] gi|50913531|ref|YP_059503.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS10394] gi|71902802|ref|YP_279605.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS6180] gi|94987771|ref|YP_595872.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS9429] gi|94989649|ref|YP_597749.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS10270] gi|94991642|ref|YP_599741.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS2096] gi|94993540|ref|YP_601638.1| transcription antitermination protein NusG [Streptococcus pyogenes MGAS10750] gi|209558715|ref|YP_002285187.1| transcription antitermination protein NusG [Streptococcus pyogenes NZ131] gi|251783420|ref|YP_002997725.1| transcription antitermination protein NusG [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306828165|ref|ZP_07461428.1| transcription termination/antitermination factor NusG [Streptococcus pyogenes ATCC 10782] gi|28810286|dbj|BAC63224.1| putative transcription antitermination factor [Streptococcus pyogenes SSI-1] gi|50902605|gb|AAT86320.1| Transcription antitermination protein [Streptococcus pyogenes MGAS10394] gi|71801897|gb|AAX71250.1| transcription antitermination protein [Streptococcus pyogenes MGAS6180] gi|94541279|gb|ABF31328.1| transcription antitermination protein [Streptococcus pyogenes MGAS9429] gi|94543157|gb|ABF33205.1| Transcription antitermination protein nusG [Streptococcus pyogenes MGAS10270] gi|94545150|gb|ABF35197.1| Transcription antitermination protein nusG [Streptococcus pyogenes MGAS2096] gi|94547048|gb|ABF37094.1| Transcription antitermination protein nusG [Streptococcus pyogenes MGAS10750] gi|209539916|gb|ACI60492.1| Transcription antitermination protein NusG [Streptococcus pyogenes NZ131] gi|242392052|dbj|BAH82511.1| transcription antitermination protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304429702|gb|EFM32748.1| transcription termination/antitermination factor NusG [Streptococcus pyogenes ATCC 10782] gi|323128169|gb|ADX25466.1| transcription antitermination protein NusG [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 184 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 12 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 71 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q V Sbjct: 72 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 131 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F G V + E ++V + + +FG T E+ Q+ Sbjct: 132 NIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 181 >gi|320547809|ref|ZP_08042093.1| transcription termination/antitermination factor NusG [Streptococcus equinus ATCC 9812] gi|320447569|gb|EFW88328.1| transcription termination/antitermination factor NusG [Streptococcus equinus ATCC 9812] Length = 183 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKIKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVVDT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG FA G V + E ++V + + +FG T EL Q+ Sbjct: 131 NIKAGDVVQIIDGAFAGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180 >gi|19705332|ref|NP_602827.1| transcription antitermination protein nusG [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329159|ref|ZP_06871661.1| transcription termination/antitermination factor NusG [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713309|gb|AAL94126.1| Transcription antitermination protein nusG [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153733|gb|EFG94549.1| transcription termination/antitermination factor NusG [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 193 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENENGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKENVKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|146321834|ref|YP_001201545.1| transcription antitermination protein NusG [Streptococcus suis 98HAH33] gi|145692640|gb|ABP93145.1| Transcription antiterminator [Streptococcus suis 98HAH33] Length = 179 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q + Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176 >gi|227486738|ref|ZP_03917054.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC 51172] gi|227235326|gb|EEI85341.1| transcriptional antiterminator NusG [Anaerococcus lactolyticus ATCC 51172] Length = 192 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 5/171 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V Y+ E + + I + + ++T+P+E V V+ K R+ FPG Sbjct: 27 RWYVVHTYTGYENRVADKIQMMIDNEQNPD-IVDVTVPTEEYVEVKNNDKKVKTRKLFPG 85 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV++K +T K ++ I++T V GF+G +P P+T +E+ + + PV ++ Sbjct: 86 YVMVKMNVTSKSWYIIRNTQGVTGFVGPDGDPVPLTKAEVRKFGVK----EKEPVLNIKV 141 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ V + GPF F + +D EK + V +FGR T ++L Y+ +E Sbjct: 142 KPGDDVNIIAGPFKDFVAKIDEIDNEKGIIKAYVDMFGRDTLIDLEYSDIE 192 >gi|34762878|ref|ZP_00143861.1| Transcription antitermination protein nusG [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887442|gb|EAA24529.1| Transcription antitermination protein nusG [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 193 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|237743080|ref|ZP_04573561.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1] gi|260495681|ref|ZP_05815804.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_33] gi|229433376|gb|EEO43588.1| transcription antitermination protein nusG [Fusobacterium sp. 7_1] gi|260196746|gb|EEW94270.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_33] Length = 193 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + V F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKETIKVDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|256028511|ref|ZP_05442345.1| transcription antitermination protein nusG [Fusobacterium sp. D11] gi|289766431|ref|ZP_06525809.1| transcription antitermination protein nusG [Fusobacterium sp. D11] gi|289717986|gb|EFD81998.1| transcription antitermination protein nusG [Fusobacterium sp. D11] Length = 193 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFKEVVTNILVPEEELTEIVRGKPKKVYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + V F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKETIQVDFTEGDYVKILKGSFKDQEGQVAEIDYEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|237740928|ref|ZP_04571409.1| transcription antitermination protein nusG [Fusobacterium sp. 4_1_13] gi|256846757|ref|ZP_05552213.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_36A2] gi|294784292|ref|ZP_06749586.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_27] gi|229430972|gb|EEO41184.1| transcription antitermination protein nusG [Fusobacterium sp. 4_1_13] gi|256717977|gb|EEU31534.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_36A2] gi|294488048|gb|EFG35400.1| transcription termination/antitermination factor NusG [Fusobacterium sp. 3_1_27] Length = 193 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENEQGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKEAIKIDFTEGDYVKILKGSFKDQEGQVAEIDHEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|237802743|ref|YP_002887937.1| transcription antitermination protein NusG [Chlamydia trachomatis B/Jali20/OT] gi|231273977|emb|CAX10769.1| transcription antitermination protein [Chlamydia trachomatis B/Jali20/OT] Length = 182 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177 EVG +V ++DG F +F G++ V +K R+ V V IFGR T V +L + QVE++V Sbjct: 122 EVGSQVKINDGVFVNFVGVLSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176 >gi|254302296|ref|ZP_04969654.1| transcription antitermination protein NusG [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322488|gb|EDK87738.1| transcription antitermination protein NusG [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 193 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ YS EKK + ++ G +VT I +P E + + +G+ R+ FP Sbjct: 8 KWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLFPA 67 Query: 64 YVLIKAV-------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV+++ + +V++ +++T V GF+G G +P P+ + E+++I N + Sbjct: 68 YVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFNII 127 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + + F G+ V + G F G V +D E RV V V IFGR+TPVE+ Sbjct: 128 GVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEIEV 187 Query: 171 NQVEKI 176 + V K+ Sbjct: 188 DGVLKV 193 >gi|171778894|ref|ZP_02919956.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282540|gb|EDT47964.1| hypothetical protein STRINF_00817 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 183 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G+ E FP Sbjct: 11 KGWFVLQTYSGYENKVKETLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKVKEVEENRFP 70 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + + Q Sbjct: 71 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVVDT 130 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V + DG F+ G V + E ++V + + +FG T EL Q+ Sbjct: 131 NIKAGDVVQIIDGAFSGQEGRVVEI--ENNKVKLMINMFGTETQAELELYQI 180 >gi|15618000|ref|NP_224284.1| transcription antitermination protein NusG [Chlamydophila pneumoniae CWL029] gi|33241411|ref|NP_876352.1| transcription antitermination protein NusG [Chlamydophila pneumoniae TW-183] gi|4376333|gb|AAD18229.1| Transcriptional Antitermination [Chlamydophila pneumoniae CWL029] gi|33235919|gb|AAP98009.1| transcription antitermination factor [Chlamydophila pneumoniae TW-183] Length = 182 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T ++ FLG G P +++ E+ I+ +E V F Sbjct: 63 YLLVKMHLTDESWLYVKSTAGIVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|212550368|ref|YP_002308685.1| transcription antitermination protein NusG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548606|dbj|BAG83274.1| transcription antitermination protein NusG [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 177 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 3/177 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRL-SRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M R+Y+++ + E K E + + S L + ++ +P+ERVV +G+ ER Sbjct: 1 MERRFYVLRAVNGKESKVKECLESEIRKNSNLRDCILQVIVPTERVVRNIRGKNYRKERA 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PV 118 F PGYV+I+AV+ +V H IK V GFLG G P P+ E+ I+ QV+ R Sbjct: 61 FLPGYVVIEAVLKSEVVHFIKSINFVSGFLG-GNRPVPLRPVEVSRILGQVDEMQNRTEE 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + VGE V ++ GPF F G ++ V +K R+ V V IFGR +P+EL Y QVEK Sbjct: 120 FDVNYNVGETVKITFGPFTGFYGEIEEVHPDKKRLKVMVKIFGRKSPLELGYLQVEK 176 >gi|304437205|ref|ZP_07397166.1| transcription termination/antitermination factor NusG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369867|gb|EFM23531.1| transcription termination/antitermination factor NusG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 183 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K ++ + + + ++ + +P E + V+ G++ R+ FPGY Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFNVVVPVENEIEVKDGKEKVVPRKVFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + P + Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGGAPKRRAKVD 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + G F + G + ++D RV V+V T +++ +QVE+I Sbjct: 136 VGDTVRIISGAFEDYAGKITSIDTSSMRVQVDVD----GTQLDVEIDQVERI 183 >gi|269302953|gb|ACZ33053.1| transcription termination/antitermination factor NusG [Chlamydophila pneumoniae LPCoLN] Length = 182 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKGEHKVVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +TD+ + +K T V+ FLG G P +++ E+ I+ +E V F Sbjct: 63 YLLIKMHLTDESWLYVKSTAGVVEFLG-GGVPVALSEDEVRSILTDIEEKKSGVVQKHQF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 EVG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 EVGSRVKINDGVFVNFIGMVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|85057746|ref|YP_456662.1| transcription antitermination protein nusG [Aster yellows witches'-broom phytoplasma AYWB] gi|84789851|gb|ABC65583.1| transcription antitermination protein nusG [Aster yellows witches'-broom phytoplasma AYWB] Length = 199 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI Q YS E + + R+ G+ LV+ + P E R G+KV ER+ +P Sbjct: 25 KWYIAQTYSGYENVVKDDLLRRVESIGIGDLVSNVLSPKEEYYETRLDGKKVKKERKMYP 84 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ ++TD+ + +++TP++ GFLG+ S I + Sbjct: 85 GYVFIQMMITDRSWFVVRNTPRITGFLGSSGMGSKPVPLSENEINPVLLKMGIINKPDYK 144 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G++V + G F G V ++D ++ ++ +EV +FGR TPVE+++N ++I Sbjct: 145 KFIGKKVEIISGSFVGQIGQVSSIDADREKMILEVDLFGRATPVEISFNDFKEI 198 >gi|260885404|ref|ZP_05734982.2| transcription termination/antitermination factor NusG [Prevotella tannerae ATCC 51259] gi|260852286|gb|EEX72155.1| transcription termination/antitermination factor NusG [Prevotella tannerae ATCC 51259] Length = 180 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++ S E K E I + + V+++ +P+E++V V G++ ER + Sbjct: 5 EMAWYVLRAISGKENKVKEYIDAEIKLNAFQGNVSQVLVPTEKIVQVHNGKRTVKERNYL 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 PGYVL++A + ++ H +++TP V+GFL +P+P+ +SE+ I+ + + + Sbjct: 65 PGYVLVEAKLVGEITHMLRNTPNVLGFLPDTNDPTPLRESEVNRILGKADEEPDVNEALT 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F +G+ V V++GPF+ F+G V+ +D+EK +V V V +FGR T ++L + QVEK Sbjct: 125 VPFVIGDSVKVTEGPFSGFSGTVEKIDDEKKKVTVTVKVFGRSTGLDLGFMQVEK 179 >gi|291276547|ref|YP_003516319.1| putative transcription antitermination protein [Helicobacter mustelae 12198] gi|290963741|emb|CBG39576.1| putative transcription antitermination protein [Helicobacter mustelae 12198] Length = 173 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 4/177 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY +Q YS E+ +++ L + ++ + +P+E V + G+K+ +R Sbjct: 1 MLLDWYAIQTYSGSEQSVEKAVKNLLDNANIECRI---VVPTEDVFEYKNGKKITKKRSI 57 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +PGYV I+ +T ++H I+ PKV F+G + P+P++ ++ I+ +VE P Sbjct: 58 YPGYVFIQVNLTTSIWHMIQRLPKVSKFIGEDKKPTPLSREDVASILEKVEKRSD-PKPK 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 ++F GE V + +GPF +F +V+ D E ++ + V IFGR TP+E+ Y+QVEKIV Sbjct: 117 IYFGKGEIVRIINGPFINFTAMVEEYDVEHEKLKLNVSIFGRNTPIEILYSQVEKIV 173 >gi|126697627|ref|YP_001086524.1| transcription antitermination protein [Clostridium difficile 630] gi|255099220|ref|ZP_05328197.1| transcription antitermination protein [Clostridium difficile QCD-63q42] gi|255305002|ref|ZP_05349174.1| transcription antitermination protein [Clostridium difficile ATCC 43255] gi|255654149|ref|ZP_05399558.1| transcription antitermination protein [Clostridium difficile QCD-23m63] gi|296449812|ref|ZP_06891580.1| transcription termination/antitermination factor NusG [Clostridium difficile NAP08] gi|296877876|ref|ZP_06901897.1| transcription termination/antitermination factor NusG [Clostridium difficile NAP07] gi|115249064|emb|CAJ66875.1| transcription antitermination protein [Clostridium difficile] gi|296261356|gb|EFH08183.1| transcription termination/antitermination factor NusG [Clostridium difficile NAP08] gi|296431130|gb|EFH16956.1| transcription termination/antitermination factor NusG [Clostridium difficile NAP07] Length = 180 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 WY+V YS E K +I + G++ + ++ +P+E VV + G++ +R+ Sbjct: 6 EASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKV 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P YVL+K ++TD+ ++ +++T V GF+G G P P+++ E+ M + S Sbjct: 66 YPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEV-KAMGIDTTDPKVVNSD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + FE+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI Sbjct: 125 IDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180 >gi|325921468|ref|ZP_08183323.1| transcription antitermination protein nusG [Xanthomonas gardneri ATCC 19865] gi|325548015|gb|EGD19014.1| transcription antitermination protein nusG [Xanthomonas gardneri ATCC 19865] Length = 165 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 68/163 (41%), Positives = 106/163 (65%), Gaps = 10/163 (6%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTD 73 R+ R+ ++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + + Sbjct: 2 RDRIVRAEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEAGIPRIDN 61 Query: 74 KVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132 + +H +K+T KV+GF+G + P P+ D E + I+ +V+ V++P V FE G+ V V+ Sbjct: 62 ESWHLVKETSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVT 121 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 DGPF FNG+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 122 DGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 164 >gi|229497072|ref|ZP_04390776.1| transcription termination/antitermination factor NusG [Porphyromonas endodontalis ATCC 35406] gi|229315997|gb|EEN81926.1| transcription termination/antitermination factor NusG [Porphyromonas endodontalis ATCC 35406] Length = 184 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 5/178 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 R+Y+++ S EKK E+I + S + V + +P+E+V++ RK +KV ER Sbjct: 7 EKRFYVLRAISGKEKKVKETIEREMSLPEPSTISQRVFRVVVPTEKVMTQRKTKKVIIER 66 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 + GYVLI+ +M+ + + ++D P VIGFLG +NPSP++ +E+E ++++V+ + P Sbjct: 67 PYLSGYVLIECMMSQLLINALRDLPDVIGFLGN-DNPSPLSLAEVEKLLHEVDTTNEGPD 125 Query: 119 SSVFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V GE V + DG F F+ ++ + EK ++ V V IFGR TP+EL Y QVEK Sbjct: 126 VVDMQFVLGESVKIIDGAFVGFSATIEEILSEKKKLKVMVKIFGRKTPLELGYAQVEK 183 >gi|254973718|ref|ZP_05270190.1| transcription antitermination protein [Clostridium difficile QCD-66c26] gi|255091108|ref|ZP_05320586.1| transcription antitermination protein [Clostridium difficile CIP 107932] gi|255312762|ref|ZP_05354345.1| transcription antitermination protein [Clostridium difficile QCD-76w55] gi|255515522|ref|ZP_05383198.1| transcription antitermination protein [Clostridium difficile QCD-97b34] gi|255648616|ref|ZP_05395518.1| transcription antitermination protein [Clostridium difficile QCD-37x79] gi|260681833|ref|YP_003213118.1| transcription antitermination protein [Clostridium difficile CD196] gi|260685431|ref|YP_003216564.1| transcription antitermination protein [Clostridium difficile R20291] gi|306518739|ref|ZP_07405086.1| transcription antitermination protein [Clostridium difficile QCD-32g58] gi|260207996|emb|CBA60162.1| transcription antitermination protein [Clostridium difficile CD196] gi|260211447|emb|CBE01557.1| transcription antitermination protein [Clostridium difficile R20291] Length = 180 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 2/176 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRF 60 WY+V YS E K +I + G++ + ++ +P+E VV + G++ +R+ Sbjct: 6 EASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVVPTEEVVETTKTGKEKTRQRKV 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P YVL+K ++TD+ ++ +++T V GF+G G P P+++ E+ M + S Sbjct: 66 YPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEDEV-KAMGIDTTDPKVVNSD 124 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+G+ V VS GPF+ G ++ +D E V V + FG+ T + +EKI Sbjct: 125 VDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVCINAFGKRTLFVIELEGIEKI 180 >gi|319759050|gb|ADV70992.1| transcription antitermination factor [Streptococcus suis JS14] Length = 179 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + +++TP V GF+G+ N S T E I + + Q + Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILVSMGQTVQEFDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ V + D F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 127 DVKVGDTVRIIDSAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176 >gi|213019489|ref|ZP_03335295.1| transcription antiterminator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994911|gb|EEB55553.1| transcription antiterminator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 256 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SN E+K + I R +++ + IP E + + K +K R+ FP Sbjct: 78 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 137 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I + PK V GFL G P + D+EI + + + A + Sbjct: 138 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 197 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI Sbjct: 198 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 254 >gi|58699178|ref|ZP_00373995.1| transcription antitermination protein NusG, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534308|gb|EAL58490.1| transcription antitermination protein NusG, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 246 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP Sbjct: 68 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 127 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I PK V GFL G P + D EI + N + A + Sbjct: 128 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 187 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI Sbjct: 188 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 244 >gi|29840454|ref|NP_829560.1| transcription antitermination protein NusG [Chlamydophila caviae GPIC] gi|29834803|gb|AAP05438.1| transcription antitermination protein NusG [Chlamydophila caviae GPIC] Length = 182 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 +VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|329943041|ref|ZP_08291815.1| transcription termination/antitermination factor NusG [Chlamydophila psittaci Cal10] gi|313848197|emb|CBY17198.1| putative transcription antitermination protein [Chlamydophila psittaci RD1] gi|325506733|gb|ADZ18371.1| transcription antitermination factor [Chlamydophila psittaci 6BC] gi|328814588|gb|EGF84578.1| transcription termination/antitermination factor NusG [Chlamydophila psittaci Cal10] gi|328914875|gb|AEB55708.1| transcription termination/antitermination factor NusG [Chlamydophila psittaci 6BC] Length = 182 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 +VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|310777978|ref|YP_003966311.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926] gi|309747301|gb|ADO81963.1| NusG antitermination factor [Ilyobacter polytropus DSM 2926] Length = 198 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 18/191 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ YS EKK + ++ +VT I +P E V +R+G+K R+ FP Sbjct: 7 KKWFMIHTYSGYEKKVKTDLEQKIETLEKGEIVTRILVPEEESVELRRGKKKVVARKLFP 66 Query: 63 GYVLIKAVM-------------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 GYV+++ ++ ++ I++T V GF+G G +P P+ D E+E+I Sbjct: 67 GYVMVEMIVTREESADGINFKVDSDAWYIIRNTNGVTGFVGVGSDPIPMEDEEVENIFRV 126 Query: 110 V-----EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + + + + F VG+ V + +G + G V +D E RV V V +FGR+T Sbjct: 127 IGLNDGDDKEVKETVQINFSVGDYVELLEGGLSGHGGKVAEIDMEHKRVKVMVEMFGRMT 186 Query: 165 PVELAYNQVEK 175 PVE+ ++ V+K Sbjct: 187 PVEVGFDGVKK 197 >gi|42519937|ref|NP_965852.1| transcription antitermination protein NusG, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409674|gb|AAS13786.1| transcription antitermination protein NusG, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 196 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP Sbjct: 18 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I + PK V GFL G P + D EI + N + A + Sbjct: 78 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETRKL 137 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI Sbjct: 138 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 194 >gi|190570973|ref|YP_001975331.1| transcription antiterminator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357245|emb|CAQ54667.1| transcription antiterminator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 278 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SN E+K + I R +++ + IP E + + K +K R+ FP Sbjct: 100 KWYILRVASNYEEKVRQYILENSMRLNINNYFNRVFIPCEELSEMDLKSKKNAKRRKSFP 159 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I + PK V GFL G P + D+EI + + + A + Sbjct: 160 GYVFLYMNLCDEVLNFINNIPKSLKVYGFLKNGNVPKVIEDNEIRSMCSALYNAQETKKL 219 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S +E GE+V ++DG F +F G V V++EK +++EV I G+ T +EL QVEKI Sbjct: 220 SYGYEKGEKVKINDGLFQNFTGKVDMVNDEKKIINIEVSILGKPTIIELDLAQVEKI 276 >gi|62185279|ref|YP_220064.1| transcription antitermination protein NusG [Chlamydophila abortus S26/3] gi|62148346|emb|CAH64113.1| putative transcription antitermination protein [Chlamydophila abortus S26/3] Length = 182 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +++ G SG+ + EI +P E V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKALEGFKESSGMTDFIQEIVLPIENVMEVKKGEHKVVEKFIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 +VG RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 DVGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|225631286|ref|ZP_03787965.1| Transcription antiterminator [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591020|gb|EEH12223.1| Transcription antiterminator [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 278 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I + PK V GFL G P + D EI + N + A + Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276 >gi|146319637|ref|YP_001199349.1| transcription antitermination protein NusG [Streptococcus suis 05ZYH33] gi|145690443|gb|ABP90949.1| Transcription antiterminator [Streptococcus suis 05ZYH33] Length = 179 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMWENILRVEIPNQTVQVEKNGEVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSV 121 GYVL++ VMTD+ + + +TP V GF+G+ N S E I + Q + Sbjct: 67 GYVLVEMVMTDEAWFVVCNTPNVTGFVGSHGNRSKPNPLLEEEIRQILVFMGQTVQEFDI 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +VG+ VC+ DG F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 127 DVKVGDTVCIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 176 >gi|225629888|ref|YP_002726679.1| Transcription antiterminator [Wolbachia sp. wRi] gi|225591869|gb|ACN94888.1| Transcription antiterminator [Wolbachia sp. wRi] Length = 278 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I PK V GFL G P + D EI + N + A + Sbjct: 160 GYVFLYVNLCDEVLNFINSIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +E GE+V ++DG F +F G V V++EK ++VEV I G+ T +EL QVEKI Sbjct: 220 GYGYEKGEKVKINDGLFQNFTGKVNMVNDEKKIINVEVSILGKPTIIELDLAQVEKI 276 >gi|203284306|ref|YP_002222046.1| transcription antitermination factor [Borrelia duttonii Ly] gi|203287842|ref|YP_002222857.1| transcription antitermination factor [Borrelia recurrentis A1] gi|201083749|gb|ACH93340.1| transcription antitermination factor [Borrelia duttonii Ly] gi|201085062|gb|ACH94636.1| transcription antitermination factor [Borrelia recurrentis A1] Length = 184 Score = 124 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++Q +S EKK + I +S + V ++ P ERV +R G+K ER+ Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGVFGNNVLDVKAPIERVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGT--GENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ ++D+ + + I V+ F+GT + P P++D E++ + Sbjct: 61 WPGYILIELDLSDQEWKSTVANIIKISGVVNFVGTTKEQKPLPISDEEVKSVFMLAGEIK 120 Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ + Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|126640370|ref|YP_001083354.1| transcription antitermination protein [Acinetobacter baumannii ATCC 17978] Length = 160 Score = 124 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ RS + ++ +P+E VV ++ G+K SER+FFPGYVL++ M D +H Sbjct: 1 MRSLKERIQRSAVADSFGDVLVPTEEVVEMKDGKKRKSERKFFPGYVLVEMEMNDDTWHI 60 Query: 79 IKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +K+ PKV+GF+G E P+P+T E + I+ +V + P FE GE + V DGPF Sbjct: 61 VKECPKVLGFIGGTPEKPAPITQREADAILARVRNTGEAPRPKTMFEPGEELLVIDGPFT 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F G+V+ V +KSR+ + + +F R T VEL + QVEK + Sbjct: 121 DFKGVVEEVQYDKSRLTLTINVFNRPTQVELEFRQVEKTI 160 >gi|89898122|ref|YP_515232.1| transcription antitermination protein NusG [Chlamydophila felis Fe/C-56] gi|89331494|dbj|BAE81087.1| transcription antitermination [Chlamydophila felis Fe/C-56] Length = 182 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EK +++ SG+ + EI +P E V+ V++G E+ +PG Sbjct: 3 KWYVVQVFTAQEKTVKKALEDFKESSGMTDFIQEIVLPIENVMEVKRGEHKIVEKFIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+LIK +TD+ + +K+ P V+ FLG G P +++ E+ +I+ +E V F Sbjct: 63 YLLIKMHLTDESWLYVKNNPGVVEFLG-GGVPLALSEDEVRNILKDIEEKKAGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 ++G RV ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 DIGSRVKINDGVFVNFIGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|58584909|ref|YP_198482.1| transcription antiterminator [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419225|gb|AAW71240.1| Transcription antiterminator [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 278 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 4/177 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SN E+K + + R G++ E+ IP E + V + +K R+ FP Sbjct: 100 KWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCFP 159 Query: 63 GYVLIKAVMTDKVYHTIKDTPK---VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + + + PK V GFL G P ++D EI + N + A + Sbjct: 160 GYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKKL 219 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S +E GE+V ++DG F +F G V +++EK +++EV I G+ T +EL QVEKI Sbjct: 220 SHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276 >gi|238927916|ref|ZP_04659676.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC 43531] gi|238884249|gb|EEQ47887.1| transcriptional antiterminator NusG [Selenomonas flueggei ATCC 43531] Length = 183 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 90/172 (52%), Gaps = 6/172 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ YS E K ++ + + + ++ ++ +P E + V+ G++ R+ FPGY Sbjct: 18 WYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 VL+ ++ + ++ +++T V GF+G+ ++P P+T E E I++ + P Sbjct: 78 VLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILS--GSVGAEPKRRTKVN 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V ++ G F + G + ++D V V+V G+ VE+ QVE I Sbjct: 136 VGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEID--QVELI 183 >gi|197294704|ref|YP_001799245.1| Transcription antitermination protein [Candidatus Phytoplasma australiense] gi|171854031|emb|CAM12004.1| Transcription antitermination protein [Candidatus Phytoplasma australiense] Length = 204 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 1/174 (0%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFFP 62 RWYI Q Y E + + R+ G+ L++ + P E R +K + ER +P Sbjct: 30 RWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYP 89 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ ++TD + +K+TP++ GFLG+ S + I + + Sbjct: 90 GYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGIMSKPNYD 149 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G++V + G A+ V +D ++ ++ VEV +FGR PVE++++ ++I Sbjct: 150 HLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203 >gi|219684566|ref|ZP_03539509.1| transcription termination/antitermination factor NusG [Borrelia garinii PBr] gi|219671928|gb|EED28982.1| transcription termination/antitermination factor NusG [Borrelia garinii PBr] Length = 184 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|289566015|ref|ZP_06446453.1| transcription termination/antitermination factor NusG [Enterococcus faecium D344SRF] gi|289162213|gb|EFD10075.1| transcription termination/antitermination factor NusG [Enterococcus faecium D344SRF] Length = 156 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 5/153 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ YS E K +I R + + + +P E+ V+ G++ + F Sbjct: 5 EKNWYVLHTYSGYENKVKANIESRAQSMKMADFIFRVVVPEEKETEVKNGKEKEIVHKTF 64 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGT---GENPSPVTDSEIEHIMNQVEAAVQRPV 118 PGYVL++ +MTD ++ +++TP V GF+G+ G P+P+ E+ HI+ + ++++ Sbjct: 65 PGYVLVEMIMTDASWYVVRNTPGVTGFVGSHGAGSKPAPLLPEEVNHILRSIGMSLRQND 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151 V EVGE V + +G FA G V VD EK Sbjct: 125 LEV--EVGEVVKIIEGAFAGLEGQVTEVDGEKE 155 >gi|325926955|ref|ZP_08188233.1| transcription antitermination protein nusG [Xanthomonas perforans 91-118] gi|325542667|gb|EGD14131.1| transcription antitermination protein nusG [Xanthomonas perforans 91-118] Length = 156 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 102/155 (65%), Gaps = 10/155 (6%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAV---------MTDKVYHTIKD 81 ++ ++ +P+E V+ +R G+K SER+FFPGYVL++ + ++ +H +K+ Sbjct: 1 MEDRFGDVLVPTEEVIEMRAGQKRRSERKFFPGYVLVQIETHEEGGIPRIDNESWHLVKE 60 Query: 82 TPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFN 140 T KV+GF+G + P P+ D E + I+ +V+ V++P V FE G+ V V++GPF FN Sbjct: 61 TSKVMGFIGGTADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFN 120 Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+V+ V+ EKSR+ V V+IFGR TPVEL + QVEK Sbjct: 121 GVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEK 155 >gi|219685431|ref|ZP_03540249.1| transcription termination/antitermination factor NusG [Borrelia garinii Far04] gi|219672987|gb|EED30008.1| transcription termination/antitermination factor NusG [Borrelia garinii Far04] Length = 184 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGAFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDVIANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|32475090|ref|NP_868084.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1] gi|32445630|emb|CAD75636.1| transcription antiterminator NusG [Rhodopirellula baltica SH 1] gi|327542511|gb|EGF28986.1| transcription antitermination protein NusG [Rhodopirellula baltica WH47] Length = 225 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 4/178 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRFF 61 WYI++V N E E++ ++ + +I +PSE V + R G++ S+R+ Sbjct: 48 MDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLL 107 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-- 119 PGY+++ + D + +++ + F G+ P P+ ++E +N+ + Sbjct: 108 PGYIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIK 167 Query: 120 -SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ F+VG+RV V +G F + G V VDE RV V + IFGR P+EL + QVE + Sbjct: 168 TAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225 >gi|187918260|ref|YP_001883823.1| transcription antitermination protein NusG [Borrelia hermsii DAH] gi|119861108|gb|AAX16903.1| transcription antitermination protein NusG [Borrelia hermsii DAH] Length = 184 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++Q +S EKK + I +S V ++ P ERV ++ G+K ER+ Sbjct: 1 MSRAWYVLQTFSQYEKKIEQEIKLLISEGIFGANVLDVKAPIERVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ + Sbjct: 61 WPGYILIELDLPEQDWKSTVANIIKIPGVVNFVGTNKEQKPLPISDEEVKSVFMLAGEIK 120 Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + FE GERV + GPF SF GI+ ++D EK ++ V V IFGR TPVE+ + Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGIIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|224534614|ref|ZP_03675188.1| transcription termination/antitermination factor NusG [Borrelia spielmanii A14S] gi|224514083|gb|EEF84403.1| transcription termination/antitermination factor NusG [Borrelia spielmanii A14S] Length = 184 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E++ +R G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIKLLISEGVFSGVVLDVKAPIEKIEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+L++ + + + I VI F+G G+ P P++D E++ + Sbjct: 61 WPGYILVELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPISDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVSVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|57238898|ref|YP_180034.1| transcription antitermination protein NUSG [Ehrlichia ruminantium str. Welgevonden] gi|58578830|ref|YP_197042.1| transcription antitermination protein NUSG [Ehrlichia ruminantium str. Welgevonden] gi|57160977|emb|CAH57883.1| transcription antitermination protein NusG [Ehrlichia ruminantium str. Welgevonden] gi|58417456|emb|CAI26660.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium str. Welgevonden] Length = 179 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+ Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV + + + + ++ PKV+ FL P ++DSE+E + ++ +V + Sbjct: 61 SPGYVFLHMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+ Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177 >gi|15594739|ref|NP_212528.1| transcription antitermination factor (nusG) [Borrelia burgdorferi B31] gi|195941256|ref|ZP_03086638.1| transcription antitermination factor (nusG) [Borrelia burgdorferi 80a] gi|218249824|ref|YP_002374911.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi ZS7] gi|223888778|ref|ZP_03623369.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 64b] gi|224533004|ref|ZP_03673611.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi WI91-23] gi|225549179|ref|ZP_03770154.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 94a] gi|226320543|ref|ZP_03796105.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 29805] gi|226321709|ref|ZP_03797235.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi Bol26] gi|3914176|sp|O51355|NUSG_BORBU RecName: Full=Transcription antitermination protein nusG gi|2688303|gb|AAC66771.1| transcription antitermination factor (nusG) [Borrelia burgdorferi B31] gi|218165012|gb|ACK75073.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi ZS7] gi|223885594|gb|EEF56693.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 64b] gi|224512064|gb|EEF82458.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi WI91-23] gi|225370405|gb|EEG99843.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 94a] gi|226232898|gb|EEH31651.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi Bol26] gi|226234055|gb|EEH32774.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 29805] gi|312149289|gb|ADQ29360.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi N40] Length = 184 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|309802977|ref|ZP_07697078.1| putative transcription termination/antitermination factor NusG [Bifidobacterium dentium JCVIHMP022] gi|308220444|gb|EFO76755.1| putative transcription termination/antitermination factor NusG [Bifidobacterium dentium JCVIHMP022] Length = 247 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 12/177 (6%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 K+ ++ R++ GL+ + +I +P E V + K R PGYVLI+ + Sbjct: 70 PAYTKRVKTNVESRVASFGLEDKIFQIEVPMEEVEKHTEKGKKIITRVRVPGYVLIRMLP 129 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV------------QRPVS 119 + +++T V GF+G + P+P++ E+ +M + A+ ++ Sbjct: 130 DENARRIVRETEGVTGFVGPTKEPAPLSRKEVVSMMAPMIASEALKKAGDKPAAAKKRTL 189 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + VG++V V+DGPF + +V +V+ ++ V V IFGR TPVEL +NQVEK+ Sbjct: 190 EVSYAVGDQVTVTDGPFTTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFNQVEKL 246 >gi|111115223|ref|YP_709841.1| transcription antitermination factor [Borrelia afzelii PKo] gi|110890497|gb|ABH01665.1| transcription antitermination factor [Borrelia afzelii PKo] Length = 184 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|58616887|ref|YP_196086.1| transcription antitermination protein NUSG [Ehrlichia ruminantium str. Gardel] gi|58416499|emb|CAI27612.1| Transcription antitermination protein NUSG [Ehrlichia ruminantium str. Gardel] Length = 179 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+QV S E K ++I G+ E+ +P E V ++ +KV +R+ Sbjct: 1 MKYEWYIIQVSSGSEDKVCQTILDSSKVLGMAESFHEVFVPYEEVTRIKHNKKVLVKRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV ++ + + + ++ PKV+ FL P ++DSE+E + ++ +V + Sbjct: 61 SPGYVFLRMNLNEDSINFVRSIPKVLNFLNNDFGTPKVISDSEMESMRKKMCQSVVDDTN 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F++G+ V ++DG F FNG V+ ++E+K V V+IFGR+T +E ++K+ Sbjct: 121 VVNFDIGDEVVINDGLFQDFNGKVEYINEDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177 >gi|224532126|ref|ZP_03672758.1| transcription termination/antitermination factor NusG [Borrelia valaisiana VS116] gi|224511591|gb|EEF81997.1| transcription termination/antitermination factor NusG [Borrelia valaisiana VS116] Length = 184 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGGVVLDVKAPIEKVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVISFVGVNKGQKPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|225552246|ref|ZP_03773186.1| transcription termination/antitermination factor NusG [Borrelia sp. SV1] gi|225371244|gb|EEH00674.1| transcription termination/antitermination factor NusG [Borrelia sp. SV1] Length = 184 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPVEKVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|330837666|ref|YP_004412307.1| transcription antitermination protein nusG [Spirochaeta coccoides DSM 17374] gi|329749569|gb|AEC02925.1| transcription antitermination protein nusG [Spirochaeta coccoides DSM 17374] Length = 189 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 9/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ WY+V YS+ E+K + + + +++ +P E V+ ++ G+K +R+ Sbjct: 1 MSKAWYVVNTYSSYEQKIERILRKMMETDPDFFAVCSDVKVPMETVMDIKDGKKREVKRK 60 Query: 60 FFPGYVLIKAVMTDKVYH----TIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAA 113 PGY+L++ + + + IK V GF+ + P P++ E++ I + Sbjct: 61 LLPGYILVELDLPENSWKTYCSQIKRIQGVTGFVTPNDSMKPQPLSAEEVKSIFQKTGDM 120 Query: 114 VQRPVSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 F VGE V + +GPF SF G + ++ +K+ + V V IFGR TPVE+ + Sbjct: 121 KTEKTFKPKQTFSVGEVVKIIEGPFESFTGTIDEINTQKNSLRVSVGIFGRSTPVEVGFL 180 Query: 172 QVEK 175 QVEK Sbjct: 181 QVEK 184 >gi|51598651|ref|YP_072839.1| transcription antitermination factor [Borrelia garinii PBi] gi|51573222|gb|AAU07247.1| transcription antitermination factor [Borrelia garinii PBi] Length = 184 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++Q YS EKK + I +S +V ++ P E+V +R G+K ER+ Sbjct: 1 MSRAWYVIQTYSQYEKKIEQDIRLLISEGAFGSIVLDVKAPIEKVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDVVANIIKVQGVINFVGVSKGQKPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D ++ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYKRKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|73666797|ref|YP_302813.1| transcription antitermination protein NusG [Ehrlichia canis str. Jake] gi|72393938|gb|AAZ68215.1| transcription antitermination protein NusG [Ehrlichia canis str. Jake] Length = 181 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+QV S E+K ++I GL E+ IP E V V+ +K+ +R+ Sbjct: 1 MKYEWYIIQVSSGSEEKVCQAILENSCVLGLGENFREVFIPYEEVTRVKHNKKILVKRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV + + + + +K P+V+ FL P ++DSE+E + ++ +V + Sbjct: 61 SPGYVFLYMNLNENSINFVKSIPRVLNFLNNDFGVPKVISDSEMESMRKKMCQSVVDDTN 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+ Sbjct: 121 VVSFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177 >gi|216264305|ref|ZP_03436297.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 156a] gi|221217654|ref|ZP_03589122.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 72a] gi|225550080|ref|ZP_03771040.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 118a] gi|215980778|gb|EEC21585.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 156a] gi|221192331|gb|EEE18550.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 72a] gi|225369192|gb|EEG98645.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi 118a] gi|312148158|gb|ADQ30817.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi JD1] Length = 184 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|216263782|ref|ZP_03435776.1| transcription termination/antitermination factor NusG [Borrelia afzelii ACA-1] gi|215979826|gb|EEC20648.1| transcription termination/antitermination factor NusG [Borrelia afzelii ACA-1] Length = 184 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I +S +V ++ P E+V ++ G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLISEGVFGSVVLDVKAPIEKVEEIKNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIVANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYGFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EKI Sbjct: 181 IEKI 184 >gi|119953185|ref|YP_945394.1| transcription antitermination protein NusG [Borrelia turicatae 91E135] gi|119861956|gb|AAX17724.1| transcription antitermination protein NusG [Borrelia turicatae 91E135] Length = 184 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 8/184 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY++Q +S E+K + I +S V ++ P ERV ++ G+K ERR Sbjct: 1 MSRAWYVLQTFSQYERKVEQEIKLLISEGVFGSNVLDVKAPIERVEEIKNGKKRIRERRI 60 Query: 61 FPGYVLIKAVMTDKVYHT----IKDTPKVIGFLGTG--ENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + ++ + + I P V+ F+GT + P P++D E++ + Sbjct: 61 WPGYILIELDLPEQEWKSTVANIIKIPGVVNFVGTNKEQKPFPISDEEVKSVFMLAGEIK 120 Query: 115 QRPVSSV--FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + FE GERV + GPF SF G++ ++D EK ++ V V IFGR TPVE+ + Sbjct: 121 ADKSIFILYDFEEGERVRIKGGPFDSFEGVIGSIDYEKKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEKI 176 +EK+ Sbjct: 181 IEKV 184 >gi|289433600|ref|YP_003463472.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169844|emb|CBH26382.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 149 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 5/151 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G+ + + +P E ++ G+ +R+ FPGYVL++ VMTD ++ +++TP V GF Sbjct: 1 MGMSDKIFRVIVPEEEETEIKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGF 60 Query: 89 LGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 +G+ P+P+ E + I+ + +R + FE+GE V V +GPFA F+G V Sbjct: 61 VGSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADFEIGETVMVKEGPFADFSGKVDE 118 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +D +K + V V +FGR TPVE+ +NQ+EKI Sbjct: 119 MDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 149 >gi|88658378|ref|YP_507745.1| transcription antitermination protein NusG [Ehrlichia chaffeensis str. Arkansas] gi|88599835|gb|ABD45304.1| transcription antitermination protein NusG [Ehrlichia chaffeensis str. Arkansas] Length = 179 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+ Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+G+ V ++DG F FNG V+ ++++K V V+IFGR+T +E ++K+ Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDKKIAGVSVMIFGRLTKIEFKLEHIQKV 177 >gi|259502667|ref|ZP_05745569.1| transcription antitermination protein NusG [Lactobacillus antri DSM 16041] gi|259169312|gb|EEW53807.1| transcription antitermination protein NusG [Lactobacillus antri DSM 16041] Length = 150 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 5/151 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G+ + + + E V V+ G+ FPGYVL++ VMTD+ ++ ++TP V GF Sbjct: 1 MGMQDYIFRVVVAEETVREVKDGQAKEVTENTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60 Query: 89 LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 LG G P+P+ E+E IM ++ VS + + G+ V V GPFA G V Sbjct: 61 LGSHGGGSKPTPLLPDEVERIMKRMG--ADITVSDIDVKEGDTVKVIAGPFADLTGKVTE 118 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VD EK ++ V V +FGR T EL ++QV+ + Sbjct: 119 VDHEKQKLKVNVEMFGRETSAELGFDQVDTV 149 >gi|254994761|ref|ZP_05276951.1| transcription antitermination protein (NusG) [Anaplasma marginale str. Mississippi] gi|255002882|ref|ZP_05277846.1| transcription antitermination protein (NusG) [Anaplasma marginale str. Puerto Rico] gi|255004013|ref|ZP_05278814.1| transcription antitermination protein (NusG) [Anaplasma marginale str. Virginia] Length = 186 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ P Sbjct: 8 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + ++D + ++ PKV F P ++ E + + Sbjct: 68 GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+ Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 184 >gi|227529493|ref|ZP_03959542.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC 49540] gi|227350578|gb|EEJ40869.1| transcriptional antiterminator NusG [Lactobacillus vaginalis ATCC 49540] Length = 150 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 5/151 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G+ + + +P + V V+ G+ + FPGYVL++ VMTD+ ++ ++TP V GF Sbjct: 1 MGMQDYIFRVVVPEDEVRQVKDGQAKEVVEKTFPGYVLVEMVMTDQAWYIARNTPGVTGF 60 Query: 89 LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 LG G P+P+ E++ IM ++ VQ + VG+ V V GPFA G V Sbjct: 61 LGSHGGGSKPTPLLPEEVDRIMKRMG--VQTVQHDIDVSVGDSVKVIAGPFADLTGKVTE 118 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VD EK ++ V V +FGR T EL ++Q++ + Sbjct: 119 VDHEKMKLKVNVEMFGRETSAELGFDQIDTV 149 >gi|194246777|ref|YP_002004416.1| Transcription antitermination protein NusG [Candidatus Phytoplasma mali] gi|193807134|emb|CAP18572.1| Transcription antitermination protein NusG [Candidatus Phytoplasma mali] Length = 195 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 1/176 (0%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF- 60 +WYI+Q YS CE ++ + + E+ P E V+ K + R Sbjct: 19 EAKWYILQTYSGCENSVKNNLLQVADSMNMLDSIIEVVSPKEFYTEVKNDGKKKKKERHI 78 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + GY+ IK +MT + ++ +K+ P+V GFLG+ N + I + + Sbjct: 79 YSGYIFIKMIMTQRSFYLVKNVPRVNGFLGSLNNHTKPVPLSEREIKPILMKIGMLSKND 138 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + + G+ V + G F+ V +VD ++ +V VE+ +FGR TP+E+ +Q ++I Sbjct: 139 LNYLNGKNVEIISGSFSGQICKVLHVDNQQEKVTVEIDLFGRSTPIEIYCSQFKEI 194 >gi|56416541|ref|YP_153615.1| transcription antitermination protein [Anaplasma marginale str. St. Maries] gi|222474909|ref|YP_002563324.1| transcription antitermination protein (NusG) [Anaplasma marginale str. Florida] gi|56387773|gb|AAV86360.1| transcription antitermination protein [Anaplasma marginale str. St. Maries] gi|222419045|gb|ACM49068.1| transcription antitermination protein (NusG) [Anaplasma marginale str. Florida] Length = 188 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYIVQV S E+K + I R + G+ + +E+ IP E V V+ +KV R+ P Sbjct: 10 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + ++D + ++ PKV F P ++ E + + Sbjct: 70 GYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASE 129 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V ++DG F FNG V+ V+E+K V V+IFGR+T +E + ++K+ Sbjct: 130 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186 >gi|295425597|ref|ZP_06818284.1| transcription termination/antitermination factor NusG [Lactobacillus amylolyticus DSM 11664] gi|295064613|gb|EFG55534.1| transcription termination/antitermination factor NusG [Lactobacillus amylolyticus DSM 11664] Length = 162 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ YS E K + R G+ + + +P + V +G+K E + FP Sbjct: 7 KQWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEKEKVETVRGKKQEVEEKIFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYVL++ VMTD+ + +++TP V GF+ G G PSP+ E+E ++NQ + ++ Sbjct: 67 GYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLLPEEVERLLNQ-QGQPEKKKP 125 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 +V FE+GE V +++G F G + ++ + Sbjct: 126 TVNFELGEHVTITEGAFNGIVGKITDIQPDN 156 >gi|270651531|ref|ZP_06222258.1| transcription termination/antitermination factor NusG [Haemophilus influenzae HK1212] gi|270317121|gb|EFA28748.1| transcription termination/antitermination factor NusG [Haemophilus influenzae HK1212] Length = 110 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 1/109 (0%) Query: 69 AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 M D+ +H +K P+V+GF+G + P+P++ E + I+N++E +P + GE Sbjct: 1 MEMNDETWHLVKSVPRVMGFIGGTPDKPAPISKREADTILNRLEQNTDKPRHRNEYHPGE 60 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V++GPFA FNG V+ VD EK R+ V V IFGR TPVEL + QVEKI Sbjct: 61 EVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKI 109 >gi|330976628|gb|EGH76672.1| transcription antitermination protein NusG [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 192 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 65/143 (45%), Positives = 95/143 (66%), Gaps = 1/143 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E E I+ +V +P FE GE V V+DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHVEVVIF 160 FNG V+ V+ EKSR+ V V+IF Sbjct: 121 DFNGTVEEVNYEKSRIQVAVLIF 143 >gi|224533792|ref|ZP_03674380.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi CA-11.2a] gi|224513085|gb|EEF83448.1| transcription termination/antitermination factor NusG [Borrelia burgdorferi CA-11.2a] Length = 186 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 8/183 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WY+VQ YS EKK + I ++ +V ++ P E+V +R G+K ER+ Sbjct: 1 MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60 Query: 61 FPGYVLIKAVMTDKVYH----TIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAV 114 +PGY+LI+ + + + I VI F+G G+ P P+ D E++ + Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKGVFMLTGEIK 120 Query: 115 QRP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 FE GERV + GPF SF G++ ++D E+ ++ V V IFGR TPVE+ + Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 173 VEK 175 +E+ Sbjct: 181 IER 183 >gi|164686515|ref|ZP_02210543.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM 16795] gi|164604384|gb|EDQ97849.1| hypothetical protein CLOBAR_00082 [Clostridium bartlettii DSM 16795] Length = 179 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 5/177 (2%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS-VRKGRKVNSERRF 60 +WY+V YS E K +I + G++ + ++ +P+E V+ + G++ +R+ Sbjct: 6 EAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKI 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P YVLI+ ++TD+ ++ +++T V GF+G G P P+++ E++ + ++ ++ Sbjct: 66 YPSYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEK---R 122 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176 EVGE V V DG F +G+VK +D + +V + V +EL +E I Sbjct: 123 TEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSIETI 179 >gi|68171883|ref|ZP_00545209.1| transcription antitermination protein NusG [Ehrlichia chaffeensis str. Sapulpa] gi|67998694|gb|EAM85420.1| transcription antitermination protein NusG [Ehrlichia chaffeensis str. Sapulpa] Length = 179 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+QV S E+K ++I GL+ E+ IP E + V+ +KV +R+ Sbjct: 1 MKYEWYIIQVSSGSEEKVCQTILENSRVLGLEESFREVFIPYEEITRVKHNKKVLVKRKL 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVS 119 PGYV + + + + I+ P+V+ FL P ++++E+E + ++ +V S Sbjct: 61 SPGYVFLYMSLHENSMNFIRSIPRVLNFLNNDFGVPKVISENEMESMRKKMCQSVVDDTS 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V FE+G+ V ++DG F FNG V+ +++++ V V+IFGR+T +E ++K+ Sbjct: 121 VVNFEIGDEVVINDGLFQDFNGKVEYINDDEKIAGVSVMIFGRLTKIEFKLEHIQKV 177 >gi|227514010|ref|ZP_03944059.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC 14931] gi|227087654|gb|EEI22966.1| transcriptional antiterminator NusG [Lactobacillus fermentum ATCC 14931] Length = 150 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 5/151 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G++ + ++ +P E V V+ G+ E + FPGYVL++ VMTD+ ++ ++TP V GF Sbjct: 1 MGMEDYIFQVVVPEETVRQVKDGQAKEVEEKTFPGYVLVEMVMTDQAWYVARNTPGVTGF 60 Query: 89 LG---TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 LG G P+P+ E++ I+ ++ V R + + VG+ V + G FA +G V Sbjct: 61 LGSHGGGSKPTPLLPEEVDRILVRMGQDVAR--TDINVAVGDNVKIIAGAFADLSGKVIE 118 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VD +K ++ VE+ +FGR+T EL +NQ++ + Sbjct: 119 VDRDKLKLKVEIEMFGRLTTTELDFNQIDTV 149 >gi|269959044|ref|YP_003328833.1| transcription antitermination protein [Anaplasma centrale str. Israel] gi|269848875|gb|ACZ49519.1| transcription antitermination protein [Anaplasma centrale str. Israel] Length = 186 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYIVQV S E+K + I R + G+ + +E+ IP E V ++ +KV R+ P Sbjct: 8 HEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTRIKYNKKVAMRRKLSP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + ++D + ++ PKV F P ++ E + Sbjct: 68 GYVFLHMKLSDDAINFVRRVPKVSNFLLDDAGVPKVIPSSEMETMRSSMCQAVSSGTSSE 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V ++DG F FNG V+ V+E+K + V+IFGR+T +E + ++K+ Sbjct: 128 VCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGISVMIFGRLTKIEFKLSSIQKV 184 >gi|88607731|ref|YP_505588.1| transcription termination/antitermination factor NusG [Anaplasma phagocytophilum HZ] gi|88598794|gb|ABD44264.1| transcription termination/antitermination factor NusG [Anaplasma phagocytophilum HZ] Length = 186 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYI+QV S E+K + I R + G+ + E+ IP E V ++ +KV +++ P Sbjct: 8 HEWYIIQVSSGNEEKISQMILERSMQLGMSDMFREVFIPYEEVTKIKYNKKVQIKKKLSP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF---LGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D + ++ PKV F P+ + E A Sbjct: 68 GYVFLYMKLCDDSVNFVRKIPKVSNFLLDDFGVPKVIPLAEMEAMRSRMCQGVASDVGDD 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V ++DG F FNG ++ V+EEK V V+IFGR+T +E ++ ++K+ Sbjct: 128 ICGFEVGDEVVINDGLFQDFNGKIEYVNEEKKVAGVSVMIFGRLTKIEFKFSSIQKV 184 >gi|290954462|ref|ZP_06559083.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica URFT1] gi|295312067|ref|ZP_06802880.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica URFT1] Length = 126 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 2/123 (1%) Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--A 112 SER++FPGYVLI+A ++ ++ +K P+V+ +G+ P P++ +E++ I+ VE Sbjct: 2 KSERKYFPGYVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSK 61 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + P + VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++Q Sbjct: 62 STVEPRLRKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQ 121 Query: 173 VEK 175 VEK Sbjct: 122 VEK 124 >gi|215425876|ref|ZP_03423795.1| transcription antitermination protein NusG [Mycobacterium tuberculosis T92] gi|289749142|ref|ZP_06508520.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T92] gi|289689729|gb|EFD57158.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T92] Length = 205 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y+ E K ++ R+ + + ++ +P+E V ++ G++ R+ PGY Sbjct: 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM----------------- 107 +L++ +TD + +++TP V GF+G PS + ++ + Sbjct: 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168 Query: 108 -NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143 ++RPV V +EVGE V V DGPFA+ + Sbjct: 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205 >gi|15606944|ref|NP_214326.1| transcription antitermination protein NusG [Aquifex aeolicus VF5] gi|14423773|sp|O67757|NUSG_AQUAE RecName: Full=Transcription antitermination protein nusG gi|28373569|pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization Substance G (Nusg), Space Group P2(1) gi|28373570|pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization Substance G (Nusg), Space Group P2(1) gi|28373571|pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization Substance G (Nusg), Space Group P2(1) gi|28373572|pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization Substance G (Nusg), Space Group P2(1) gi|28373573|pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization Substance G (Nusg), Space Group I222 gi|29726735|pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1) gi|29726736|pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1) gi|29726737|pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1) gi|29726738|pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1) gi|29726739|pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1) gi|2984191|gb|AAC07722.1| transcription antitermination protein NusG [Aquifex aeolicus VF5] Length = 248 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 2/135 (1%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + K+ + + FPGY+LIKA M DK+ I+ TP V + G P P+ + Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEE 175 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E+++I+NQ++ V+ S V FE G++V V +GPF +F G V+ V EK ++ V + IFG Sbjct: 176 EVQNILNQIKRGVK--PSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFG 233 Query: 162 RVTPVELAYNQVEKI 176 R+TPVEL ++QVEKI Sbjct: 234 RMTPVELDFDQVEKI 248 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 +WY +QV E +A E++ L GL LV E+ +P+E V +R Sbjct: 10 EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQ 59 >gi|166154530|ref|YP_001654648.1| transcription antitermination protein NusG [Chlamydia trachomatis 434/Bu] gi|166155405|ref|YP_001653660.1| transcription antitermination protein NusG [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335790|ref|ZP_07224034.1| transcription antitermination protein NusG [Chlamydia trachomatis L2tet1] gi|165930518|emb|CAP04012.1| transcription antitermination protein [Chlamydia trachomatis 434/Bu] gi|165931393|emb|CAP06966.1| transcription antitermination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 182 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ EI++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEIKNILADLEEKKSGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177 EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176 >gi|255311121|ref|ZP_05353691.1| transcription antitermination protein NusG [Chlamydia trachomatis 6276] gi|255317422|ref|ZP_05358668.1| transcription antitermination protein NusG [Chlamydia trachomatis 6276s] Length = 182 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKHIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177 EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176 >gi|15605041|ref|NP_219825.1| transcription antitermination protein NusG [Chlamydia trachomatis D/UW-3/CX] gi|76789042|ref|YP_328128.1| transcription antitermination protein NusG [Chlamydia trachomatis A/HAR-13] gi|237804665|ref|YP_002888819.1| transcription antitermination protein NusG [Chlamydia trachomatis B/TZ1A828/OT] gi|255348680|ref|ZP_05380687.1| transcription antitermination protein NusG [Chlamydia trachomatis 70] gi|255503220|ref|ZP_05381610.1| transcription antitermination protein NusG [Chlamydia trachomatis 70s] gi|255506898|ref|ZP_05382537.1| transcription antitermination protein NusG [Chlamydia trachomatis D(s)2923] gi|18202223|sp|O84322|NUSG_CHLTR RecName: Full=Transcription antitermination protein nusG gi|3328738|gb|AAC67913.1| Transcriptional termination protein [Chlamydia trachomatis D/UW-3/CX] gi|76167572|gb|AAX50580.1| NusG [Chlamydia trachomatis A/HAR-13] gi|231272965|emb|CAX09876.1| transcription antitermination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|296435836|gb|ADH18010.1| transcription antitermination protein NusG [Chlamydia trachomatis G/9768] gi|296436761|gb|ADH18931.1| transcription antitermination protein NusG [Chlamydia trachomatis G/11222] gi|296437696|gb|ADH19857.1| transcription antitermination protein NusG [Chlamydia trachomatis G/11074] gi|297140195|gb|ADH96953.1| transcription antitermination protein NusG [Chlamydia trachomatis G/9301] gi|297748449|gb|ADI50995.1| NusG [Chlamydia trachomatis D-EC] gi|297749329|gb|ADI52007.1| NusG [Chlamydia trachomatis D-LC] Length = 182 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177 EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176 >gi|289525359|emb|CBJ14835.1| transcription antitermination protein [Chlamydia trachomatis Sweden2] gi|296434909|gb|ADH17087.1| transcription antitermination protein NusG [Chlamydia trachomatis E/150] gi|296438629|gb|ADH20782.1| transcription antitermination protein NusG [Chlamydia trachomatis E/11023] Length = 182 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGIVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKIV 177 EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++V Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEVV 176 >gi|222834348|gb|EEE72825.1| predicted protein [Populus trichocarpa] Length = 109 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%) Query: 69 AVMTDKVYHTIKDTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 MTD+ +H +K+T KV GF+G PSP++ E++ IM Q++ V++P FEVGE Sbjct: 1 MEMTDETWHLVKNTSKVTGFVGGARNRPSPISQREVDKIMTQMQEGVEKPRPKTLFEVGE 60 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V DGPF FNG V+ V+ EKSR+ V V IFGR TPVEL + QVEK+ Sbjct: 61 MVRVKDGPFTDFNGNVEEVNYEKSRLRVTVTIFGRATPVELEFGQVEKV 109 >gi|15835211|ref|NP_296970.1| transcription antitermination protein NusG [Chlamydia muridarum Nigg] gi|270285383|ref|ZP_06194777.1| transcription antitermination protein [Chlamydia muridarum Nigg] gi|270289396|ref|ZP_06195698.1| transcription antitermination protein [Chlamydia muridarum Weiss] gi|301336780|ref|ZP_07224982.1| transcription antitermination protein NusG [Chlamydia muridarum MopnTet14] gi|18203363|sp|Q9PK75|NUSG_CHLMU RecName: Full=Transcription antitermination protein nusG gi|7190632|gb|AAF39426.1| transcription antitermination protein NusG [Chlamydia muridarum Nigg] Length = 182 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQV++ EKK +S+ SG+ + +I +PSE V+ V+KG E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+L+K +TD+ + +K T V+ FLG G P +++ E+++I+ +E V F Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKHKF 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 EVG +V ++DG F +F G+V V +K R+ V V IFGR T V +L + QVE++ Sbjct: 122 EVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >gi|319777680|ref|YP_004137331.1| transcription antitermination protein nusg [Mycoplasma fermentans M64] gi|318038755|gb|ADV34954.1| Transcription antitermination protein nusG [Mycoplasma fermentans M64] Length = 201 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 22/196 (11%) Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSER 44 M +WY++ S E K VE++ R+ ++ P E Sbjct: 1 MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 60 Query: 45 VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104 + GY+ I MTD+ + +++T V G +G+ + T Sbjct: 61 EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 120 Query: 105 HIMN------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 I +++ + V+ F++GE V + DGPF G V E +V VE+ Sbjct: 121 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 180 Query: 159 IFGRVTPVELAYNQVE 174 G+ TP + Y +++ Sbjct: 181 YLGKKTPADFEYKEIK 196 >gi|238810255|dbj|BAH70045.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 205 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 22/196 (11%) Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSER 44 M +WY++ S E K VE++ R+ ++ P E Sbjct: 5 MDKNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKEL 64 Query: 45 VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104 + GY+ I MTD+ + +++T V G +G+ + T Sbjct: 65 EKQKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQH 124 Query: 105 HIMN------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 I +++ + V+ F++GE V + DGPF G V E +V VE+ Sbjct: 125 QIDKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIE 184 Query: 159 IFGRVTPVELAYNQVE 174 G+ TP + Y +++ Sbjct: 185 YLGKKTPADFEYKEIK 200 >gi|302062645|ref|ZP_07254186.1| transcription antitermination protein NusG [Pseudomonas syringae pv. tomato K40] Length = 141 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 1/138 (0%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + S+ R+ +G++ EI +P+E VV +R G+K SER+FFPGYVL++ M + +H Sbjct: 1 MRSLVERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHL 60 Query: 79 IKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 +KDTP+V+GF+G + P+P+TD E E I+ +V +P FE GE V V+DGPFA Sbjct: 61 VKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFA 120 Query: 138 SFNGIVKNVDEEKSRVHV 155 FNG V+ V+ EKSR+ V Sbjct: 121 DFNGTVEEVNYEKSRIQV 138 >gi|269123300|ref|YP_003305877.1| NusG antitermination factor [Streptobacillus moniliformis DSM 12112] gi|268314626|gb|ACZ01000.1| NusG antitermination factor [Streptobacillus moniliformis DSM 12112] Length = 190 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 19/186 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WYI+ YS EKK + R+ L+ V I +P E++ +KG+ V R+ FP Sbjct: 10 KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69 Query: 63 GYVLIKA-------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 YVL++ + + ++ I++T V GF+G G +P P+ + E+E I ++ Sbjct: 70 SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFSK 129 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + + + +EVG+ V DG G V+++D ++ + + + R T + L Sbjct: 130 MSN--EDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLG 183 Query: 170 YNQVEK 175 N+V K Sbjct: 184 LNEVTK 189 >gi|304316482|ref|YP_003851627.1| NusG antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777984|gb|ADL68543.1| NusG antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 187 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 3/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ + E K I L S L+ + IP ++ + ++V + FPG Sbjct: 6 KWYVIYTRTGDELKVKRLIE--LLFSKLNKKPIRVLIPKRAIIERKGKKRVEKIKFLFPG 63 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV IK M ++Y+ I P + FL P+ V D EI I++ V S Sbjct: 64 YVFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGD-SDIVGFSTGI 122 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++G +V + DGP F G+++ +D+ K RV V + + G V+L + VEKI Sbjct: 123 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175 >gi|289548403|ref|YP_003473391.1| NusG antitermination factor [Thermocrinis albus DSM 14484] gi|289182020|gb|ADC89264.1| NusG antitermination factor [Thermocrinis albus DSM 14484] Length = 242 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + K+ E + FPGY+LIKA M D + I+ TP + + TG +P+ + Sbjct: 110 KITCKENKTEAKIILESKMFPGYLLIKADMDDSLLRAIEKTPHIYRPVLTGGRVAPLDER 169 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E+E I+ V+ V+ S V FE G++V V +GPF +F G V V E+ +V V + IFG Sbjct: 170 EVERIIAFVKKGVR--PSKVLFEKGDQVRVIEGPFMNFTGTVDEVHPEREKVVVLISIFG 227 Query: 162 RVTPVELAYNQVEKI 176 R+TPVEL ++Q+EK+ Sbjct: 228 RLTPVELDFSQIEKL 242 Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 RWY +QV + E A E++ L GL V E+ +P+E V ++ Sbjct: 4 EYRWYALQVEAGKEATARENLLKVLEIEGLQDKVQEVVVPAEEKVVIKTM 53 >gi|188996251|ref|YP_001930502.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931318|gb|ACD65948.1| NusG antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 265 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 R ++ E + FPGY+LIKA ++D + +K TP +IGF+ G P P+ ++ Sbjct: 132 KITCKENRTEARIVLENKIFPGYILIKAKLSDDLIDLVKKTPFLIGFVSAGGKPVPLNEN 191 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ ++ Q++ + + + G+ V V +GPF +F G V+ V +K ++ + IFG Sbjct: 192 DVMKVLGQIQKGTPK-AKKLLYTKGDIVRVIEGPFMNFTGTVEEVFPDKEKLIALITIFG 250 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 251 RATPVELEFSQVEKI 265 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 +WY + SN E +A E+ L + L+HLV E+ +P+E V ++ Sbjct: 25 EKKWYALYTQSNLEIRAKENFVKNLKLNNLEHLVDEVIVPAEEKVVLKSQ 74 >gi|237756125|ref|ZP_04584698.1| transcription termination/antitermination factor NusG [Sulfurihydrogenibium yellowstonense SS-5] gi|237691710|gb|EEP60745.1| transcription termination/antitermination factor NusG [Sulfurihydrogenibium yellowstonense SS-5] Length = 265 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 R ++ E + FPGY+LIKA +TD + +K TP +IGF+ G P P+ ++ Sbjct: 132 KITCKENRTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPFLIGFVSAGGKPVPLNEN 191 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ ++ Q++ + + + G+ + V +GPF +F G V+ V +K ++ + IFG Sbjct: 192 DVMKVLGQIQKGAPK-AKKLLYTKGDIIRVIEGPFMNFTGTVEEVFPDKEKLIALITIFG 250 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 251 RATPVELEFSQVEKI 265 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 +WY + SN E +A E+ L + L+HLV E+ +P+E V ++ Sbjct: 25 EKKWYALYTQSNLEIRAKENFIKNLKLNNLEHLVDEVIVPAEEKVVLKSQ 74 >gi|163784527|ref|ZP_02179388.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] gi|159880203|gb|EDP73846.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] Length = 259 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + + K+ E + FPGY+LIKA +TD++ IK TP +IGF+ G P P+T+ Sbjct: 126 KIQCKENKTEAKIVLENKIFPGYLLIKAKLTDELIDLIKKTPYIIGFVSAGGVPVPLTEE 185 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E++ ++ Q++ + + F G++V V +GPF +F G+V+ V EK ++ V + IFG Sbjct: 186 EVKRVLGQIQKGAPKVK-KLLFATGDKVRVIEGPFMNFTGVVEKVIPEKEKLIVSISIFG 244 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 245 RSTPVELEFSQVEKI 259 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49 +WY + SN E +A E++ +L + + LV E+ +P+E V ++ Sbjct: 19 EKKWYALYTQSNLEVRAKENLLKQLELNNMKDLVDEVVVPAEEKVVIK 66 >gi|50364906|ref|YP_053331.1| transcription antitermination factor [Mesoplasma florum L1] gi|50363462|gb|AAT75447.1| transcription antitermination factor [Mesoplasma florum L1] Length = 209 Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 90/191 (47%), Gaps = 21/191 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W++V + E+K + + ++ ++ V +I I V++ + E+ FPG Sbjct: 19 QWFVVNSQTGHEEKVLNDLKNKIKAEKMEDQVFDIKISKGTVLTKTGKQ---KEKNLFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 Y+ I +M+++ + +++TP V GF+G+ + ++ ++ + + Sbjct: 76 YLFINMIMSEESWFVVRNTPGVTGFIGSSGRGAKPFPLTVDEVIEMLIPKTEVIVEEIET 135 Query: 116 ----------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 +P+ + F VG+ V V +G A G V ++D EK V + +FGR T Sbjct: 136 VDVHNEAVAKKPLFTAPFVVGDFVRVKEGINAGEEGEVSSMDFEKGVAVVLIEMFGRYTN 195 Query: 166 VELAYNQVEKI 176 +E+++ VE + Sbjct: 196 LEISFENVEPV 206 >gi|296500930|ref|YP_003662630.1| transcription antitermination protein NusG [Bacillus thuringiensis BMB171] gi|296321982|gb|ADH04910.1| transcription antitermination protein NusG [Bacillus thuringiensis BMB171] Length = 149 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 G+ + + +P E V ++ G++ +R+ FPGYVL++ +MTD ++ +++TP V GF Sbjct: 1 MGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDDSWYVVRNTPGVTGF 60 Query: 89 LGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 +G+ + S + E ++ ++ + V FE+ E V V++GPFA + G ++ +D Sbjct: 61 VGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETVRVNEGPFADYTGAIEEID 120 Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 121 VEKKKVSVLVDMFGRETPVELDFHQIEKL 149 >gi|293363571|ref|ZP_06610327.1| NusG family protein [Mycoplasma alligatoris A21JP2] gi|292552920|gb|EFF41674.1| NusG family protein [Mycoplasma alligatoris A21JP2] Length = 198 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEI--------------TIPSERVVSVRK 50 WY+V S E K VE++ R+ ++H P E + Sbjct: 6 WYMVSTVSGKEDKVVEALRNRIIAEQVNHSFDSTATDAGAFKVFRKPVLSPKEAEKKQKG 65 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107 +PGY+ IK MTD+ + I++T V G +G+ + T + + I Sbjct: 66 EDYKVKWVNMYPGYIFIKMDMTDEAWFVIRNTQYVTGLIGSSGKGAKPTPVQNKEIKKSL 125 Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + + V F+ GE V V DGP+ G + +D +K V + FG+ Sbjct: 126 IQEQKALDDFESGKYLVTFKDGEIVEVIDGPYQGEKGPISQIDHDKQTAVVMIESFGKQV 185 Query: 165 PVELAYNQVE 174 VE+ Y ++ Sbjct: 186 SVEIEYKYLK 195 >gi|225850723|ref|YP_002730957.1| transcription termination/antitermination factor NusG [Persephonella marina EX-H1] gi|225646577|gb|ACO04763.1| transcription termination/antitermination factor NusG [Persephonella marina EX-H1] Length = 264 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + + ++ E + FPGY+LIKA + D + IK TP +IGF+ G P P+ D Sbjct: 131 KIQCKENKTEARIVLENKVFPGYLLIKAELNDDLIDLIKKTPFIIGFVSAGGMPVPLKDE 190 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 +IE +++Q++ + + F+ G++V + +GPF +F G+V+ V EK ++ V + IFG Sbjct: 191 DIEKVLSQIQKGAPKVK-KLLFQRGDQVRIIEGPFMNFTGVVEEVIPEKEKLVVAISIFG 249 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 250 RSTPVELEFSQVEKI 264 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49 WY + SN E +A E++ L + + HLV E+ +P+E V ++ Sbjct: 27 WYALYTQSNLEIRAKENLIKMLEMNNMKHLVDEVLVPAEEKVVIK 71 >gi|295105743|emb|CBL03286.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b] Length = 180 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 3/172 (1%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT---EITIPSERVVSVRKGRKVNSERRFF 61 WY++QV S E KA E I + E +P +V G+ R F Sbjct: 2 WYVIQVLSGQEDKACELINLHAAGQRSKDNRPVLKECFVPRYQVERKFHGQYRTLTRNLF 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV+ D++ + P LG+ ++ P+ SE I + S Sbjct: 62 PGYVIAVTNRVDELNDRLVKIPTFTRMLGSEKSFIPLDRSEKAFINAFTTEKHRTISLSK 121 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G++V V++GP + G + V+ K VEV +FGR VE+ V Sbjct: 122 AVYEGDKVVVTEGPMINREGWITEVNRRKGTARVEVSMFGRTINVEIGLAIV 173 >gi|54020638|ref|YP_116165.1| transcription antitermination protein NusG [Mycoplasma hyopneumoniae 232] gi|72080964|ref|YP_288022.1| transcription antitermination protein NusG [Mycoplasma hyopneumoniae 7448] gi|53987811|gb|AAV28012.1| transcription antitermination protein [Mycoplasma hyopneumoniae 232] gi|71914088|gb|AAZ53999.1| transcription antitermination protein [Mycoplasma hyopneumoniae 7448] gi|312601579|gb|ADQ90834.1| Transcription antitermination protein [Mycoplasma hyopneumoniae 168] Length = 190 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 11/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60 +WY++ S+ E A+ + R+ L+ EIT +P + G K R Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------TDSEIEHIMNQVEAA 113 + GY IK M DK + +++T V G +G+ + + + Q+ Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172 Q ++ +E+G+ V V+ GPF+ G + ++E K+ + VE+ +FGR TP Y Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNETKTLITVELESVFGRRTPATFEYKN 184 Query: 173 VEKI 176 ++K+ Sbjct: 185 LKKV 188 >gi|294155399|ref|YP_003559783.1| transcription anti-termination factor NusG [Mycoplasma crocodyli MP145] gi|291599945|gb|ADE19441.1| transcription anti-termination factor NusG [Mycoplasma crocodyli MP145] Length = 198 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 21/191 (10%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITI--PSERV 45 M WY+V S E + VE++ R+ + H + + + P E Sbjct: 1 MYKFNWYMVSTVSGKEDRVVEALKNRIIAEEVSHSFDSTATENGAFKIFKKPVLTPKEAE 60 Query: 46 VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN---PSPVTDSE 102 ++ +PGY+ IK MTD+ + I++T V G +G+ P+PV + E Sbjct: 61 KKLKGEEYKIKWANMYPGYIFIKMDMTDEAWFVIRNTQFVTGLIGSSGKGAKPTPVPEKE 120 Query: 103 IEHIMNQVEAAVQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 I + Q + A++ V F+ E V V DGP+ G + ++D K +E+ Sbjct: 121 IRKSLIQEDKALEDYKTGKYLVEFKADEIVEVIDGPYQGEKGPILSIDHNKQTAIIELES 180 Query: 160 FGRVTPVELAY 170 FG+ PVEL Y Sbjct: 181 FGKKVPVELEY 191 >gi|71893985|ref|YP_279431.1| transcription antitermination protein NusG [Mycoplasma hyopneumoniae J] gi|71852112|gb|AAZ44720.1| transcription antitermination protein [Mycoplasma hyopneumoniae J] Length = 190 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 11/184 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT---IPSERVVSVRKGRKVNSERRF 60 +WY++ S+ E A+ + R+ L+ EIT +P + G K R Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------TDSEIEHIMNQVEAA 113 + GY IK M DK + +++T V G +G+ + + + Q+ Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172 Q ++ +E+G+ V V+ GPF+ G + ++ K+ + VE+ +FGR TP Y Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184 Query: 173 VEKI 176 ++K+ Sbjct: 185 LKKV 188 >gi|288818176|ref|YP_003432524.1| transcription antitermination protein [Hydrogenobacter thermophilus TK-6] gi|288787576|dbj|BAI69323.1| transcription antitermination protein [Hydrogenobacter thermophilus TK-6] gi|308751777|gb|ADO45260.1| NusG antitermination factor [Hydrogenobacter thermophilus TK-6] Length = 241 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + K+ E + FPGY+LIKA M D + I+ TP V + G P+ + Sbjct: 109 KINCKENKVEAKIILESKMFPGYLLIKAEMNDALLRAIEKTPHVYKPVLVGGRVVPIDEK 168 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E+E +++ V+ V+ V FE G++V V +GPF +F G V+ V E+ ++ V + IFG Sbjct: 169 EVERVISFVKKGVR--PVKVLFEKGDQVRVIEGPFMNFTGTVEEVHPEREKIVVLISIFG 226 Query: 162 RVTPVELAYNQVEKI 176 R+TPVEL ++QVEK+ Sbjct: 227 RLTPVELDFSQVEKL 241 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 +WY +QV + E A E++ + GL V ++ +P+E V +R Sbjct: 5 KWYALQVEAGKEATARENLLKVIELEGLQEYVEDVVVPAEEKVVIRTQ 52 >gi|149916011|ref|ZP_01904534.1| NusG antitermination factor [Roseobacter sp. AzwK-3b] gi|149810085|gb|EDM69933.1| NusG antitermination factor [Roseobacter sp. AzwK-3b] Length = 177 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+VQ N K ++ L + +P + V R G+ + + FPG Sbjct: 8 RWYLVQFKPNSHK---------IAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ + + I T V + P PV D+ + ++ + + + F Sbjct: 59 YMFVSLDTIRGPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPET-F 117 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GE+V + GPFASF V+ + ++ RV V + G+ T +++ + + Sbjct: 118 SPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVDADIL 166 >gi|255022530|ref|ZP_05294516.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J1-208] Length = 132 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V+ G+ +R+ Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGYVL++ VMTD ++ +++TP V GF+ G+G P+P+ E + I+ + +R Sbjct: 61 FPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKR- 119 Query: 118 VSSVFFEVGERVCV 131 + FE+GE V V Sbjct: 120 -AEADFEIGETVMV 132 >gi|62257572|gb|AAX77724.1| unknown protein [synthetic construct] Length = 149 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 2/112 (1%) Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVFF 123 LI+A ++ ++ +K P+V+ +G+ P P++ +E++ I++ VE + P + Sbjct: 27 LIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILDFVEGSKSTVEPRLRKSY 86 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 VGE V V +GPF F G+++ V+ EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 87 HVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 138 >gi|319790550|ref|YP_004152183.1| NusG antitermination factor [Thermovibrio ammonificans HB-1] gi|317115052|gb|ADU97542.1| NusG antitermination factor [Thermovibrio ammonificans HB-1] Length = 246 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + R K+ R +PGY+ IKA + + I+ P+V+GF+ G P V+++ Sbjct: 112 KIKCPENRVEAKIELRDRLYPGYIFIKADLDKDLQSLIRRVPRVLGFVSAGGKPVTVSEA 171 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 EI+ + +++ V R + + F++G++V + +GPF F G + +D E ++ V V IF Sbjct: 172 EIQAMKERLKRGVPR-IRKLKFDIGDKVKIKEGPFIGFEGTISEIDPEHGKLIVLVNIFD 230 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 231 RQTPVELEFDQVEKI 245 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP 41 +WY + V S E + ++ L G++ V EI IP Sbjct: 3 EKKWYTLHVQSGFEFRVKANLEKALKEEGVEDKVEEIFIP 42 >gi|195952631|ref|YP_002120921.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1] gi|195932243|gb|ACG56943.1| NusG antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 245 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 2/135 (1%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + K+ + + FPGY+L+KA M D++ I+ P V + G +P+ + Sbjct: 113 KITCKDNKTEAKIVLDNKMFPGYILLKAHMDDRLLRAIEKAPHVYKPVLVGGKIAPLKEE 172 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 E+ I+ + + FE GE+V + +GPF SF G ++ V+ E+ +++V + IFG Sbjct: 173 EVNKILAHAQRGFK--TKKAVFEKGEQVRIIEGPFMSFTGTIEEVNLEREKLNVLISIFG 230 Query: 162 RVTPVELAYNQVEKI 176 R+TPVEL ++QVEKI Sbjct: 231 RLTPVELDFSQVEKI 245 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR 49 MT +WY +QV + E A ES+ + ++ LV +I +P+E V ++ Sbjct: 1 MTDMKWYALQVEAGKETTAKESLMKVIELDKINDLVEDIVLPAEEKVVIK 50 >gi|239618207|ref|YP_002941529.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239507038|gb|ACR80525.1| NusG antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 354 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + R +PGY+ I+ +MTD+ ++ +K TP V+ F+ G P + EI+ ++ V Sbjct: 225 FKITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGL 284 Query: 113 AVQRPVS-----SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + V FEV E V ++ GPF F G + +D E+ V V V IFGR TPV Sbjct: 285 EEYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVM 344 Query: 168 LAYNQVEKIV 177 L +++EKIV Sbjct: 345 LNLSEIEKIV 354 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 22/42 (52%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +WYI+Q YS E E++ ++ G DHL I +P Sbjct: 1 MRKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPE 42 >gi|154249533|ref|YP_001410358.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1] gi|154153469|gb|ABS60701.1| NusG antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 354 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 6/130 (4%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ--- 109 + +++ +PGY+ ++ +M D + ++ TP V+GF+ G P P+ E+ +I+ Sbjct: 225 QKTKKKKLYPGYLFVEMIMNDHTWEFVRGTPFVMGFVSAGGRPLPLKPEEVHYILRMAGL 284 Query: 110 ---VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V+A Q + + G+ V + GPF F+GIVK VDEEK + V V IFGR TPV Sbjct: 285 EETVQAKPQVAKVELEIQPGDAVKIITGPFEGFSGIVKEVDEEKQELKVNVTIFGRETPV 344 Query: 167 ELAYNQVEKI 176 + N+VEKI Sbjct: 345 TVHLNEVEKI 354 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40 M WYI+ + E K E++ ++ G +LV+ + + Sbjct: 1 MKKEWYIIHTITGYENKVKENLEAKIEAQGYRNLVSRVIV 40 >gi|225849560|ref|YP_002729725.1| transcription termination/antitermination factor NusG [Sulfurihydrogenibium azorense Az-Fu1] gi|225643839|gb|ACN98889.1| transcription termination/antitermination factor NusG [Sulfurihydrogenibium azorense Az-Fu1] Length = 260 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + ++ E + FPGY+LIKA +TD + +K TP +IGF+ G P P+ + Sbjct: 127 KISCKENKTEARIVLENKIFPGYILIKAKLTDDLIDLVKKTPYLIGFVSAGGVPVPLDEK 186 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ +++Q++ + + F G+ V V +GPF +F G+V V +K ++ + IFG Sbjct: 187 DVAKVISQIQKGTPKVR-KLLFAKGDMVRVIEGPFMNFTGVVDEVFPDKEKLIALITIFG 245 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++QVEKI Sbjct: 246 RATPVELEFSQVEKI 260 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG 51 +WY + SN E KA E+ L + LD+LV E+ +P+E V ++ Sbjct: 20 EKKWYALYTQSNLEIKAKENFLKNLKLNNLDYLVDEVIVPAEEKVVIKAQ 69 >gi|325833223|ref|ZP_08165729.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] gi|325485605|gb|EGC88073.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] Length = 212 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ + E I + D ++ E +P V +G+ FPGY Sbjct: 44 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 99 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +++ D++ ++ P L P+ E+ I E + S Sbjct: 100 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 159 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K Sbjct: 160 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 210 >gi|313665044|ref|YP_004046915.1| NusG family protein [Mycoplasma leachii PG50] gi|312949338|gb|ADR23934.1| NusG family protein [Mycoplasma leachii PG50] Length = 214 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 26/196 (13%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ + E+K + + ++ + ++ V I I VS S + FPG Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGK---TSIKNKFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-- 121 Y+ I +M++K + I++TP V GF+G+ + + IE +N + ++ + Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135 Query: 122 ---------------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 F++G+ V V G + G VK++D K V + +F Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDVVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195 Query: 161 GRVTPVELAYNQVEKI 176 GR T +E+++ VE I Sbjct: 196 GRWTTLEVSFKNVEPI 211 >gi|85714631|ref|ZP_01045618.1| transcriptional antitermination protein, putative [Nitrobacter sp. Nb-311A] gi|85698516|gb|EAQ36386.1| transcriptional antitermination protein, putative [Nitrobacter sp. Nb-311A] Length = 170 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 11/172 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+VQ + + E KA + E+ +P R + FP Sbjct: 7 QWYVVQTHPHAEGKAAAHLRR---------QGFEVYLPRYARRRRHARRVDITASPLFPR 57 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVF 122 Y+ + + + + I+ T V + +G+ P+PV D + + + ++ + Sbjct: 58 YLFVAIDLVHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPR 117 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V DG F+ G+ +++ + RV V + + GR V + + +E Sbjct: 118 FSAGDTVRVVDGAFSDCLGLFESM-SDGERVLVLLDLLGRKVRVTMDIDTIE 168 >gi|85860190|ref|YP_462392.1| transcription antitermination protein [Syntrophus aciditrophicus SB] gi|85723281|gb|ABC78224.1| transcription antitermination protein [Syntrophus aciditrophicus SB] Length = 167 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 11/176 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY V S E K GL +P V S RK R+ FP Sbjct: 1 MSWYAVHTRSRHEDKVFT---------GLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFP 51 Query: 63 GYVLIKA-VMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY+ + + ++ + T V+ LG + + + ++ + + Sbjct: 52 GYLFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNL 111 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + VGE + DGPF G V D +K V + + R ++L +Q+EKI Sbjct: 112 QYPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167 >gi|83319581|ref|YP_424106.1| transcription antitermination protein NusG [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283467|gb|ABC01399.1| transcription antitermination protein NusG [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 214 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 26/196 (13%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ + E+K + + ++ + ++ V I I VS S + FPG Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGK---ASIKNKFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-- 121 Y+ I +M++K + I++TP V GF+G+ + + IE +N + ++ + Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEE 135 Query: 122 ---------------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 F++G+ V V G + G VK++D K V + +F Sbjct: 136 EKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMF 195 Query: 161 GRVTPVELAYNQVEKI 176 GR T +E+++ VE I Sbjct: 196 GRWTTLEVSFKNVEPI 211 >gi|313678177|ref|YP_004055917.1| transcription antitermination protein NusG [Mycoplasma bovis PG45] gi|312950368|gb|ADR24963.1| putative transcription antitermination protein NusG [Mycoplasma bovis PG45] Length = 199 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50 WY++ S E K VES+ R+ ++ + + + + + + Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEDCFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107 + GY+ I MTDK + +++T V G +G+ + T + I Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 Q+ + F VGE V + +GPF G V +E +V VEV FG+ Sbjct: 126 EKEKQLIEDFNSGKNIDKFTVGEIVEIIEGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185 Query: 165 PVELAYNQVE 174 P + Y+ VE Sbjct: 186 PTDFDYSVVE 195 >gi|148377312|ref|YP_001256188.1| transcription antitermination protein NusG [Mycoplasma agalactiae PG2] gi|148291358|emb|CAL58741.1| Transcription antitermination protein (NusG) [Mycoplasma agalactiae PG2] Length = 199 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 20/190 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50 WY++ S E K VES+ R+ ++ + + + + + Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107 + GY+ I MTDK + +++T V G +G+ + T + I Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 Q+ F VGE V + DGPF G V +E +V VEV FG+ Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185 Query: 165 PVELAYNQVE 174 P + Y+ VE Sbjct: 186 PTDFDYSVVE 195 >gi|160915636|ref|ZP_02077844.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991] gi|158432112|gb|EDP10401.1| hypothetical protein EUBDOL_01643 [Eubacterium dolichum DSM 3991] Length = 182 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 4/173 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+VQV S EK+ E +S ++TE IP G + + F Sbjct: 13 MNWYVVQVRSGHEKQIAEKCRTMISN----DILTECFIPEYIHKRKFSGVWHDVKDVLFK 68 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + D +Y +K P + +G + D + M S+ Sbjct: 69 GYVFMITDKIDLLYSELKKIPDFVKVIGKKQAEIYPLDEDEIAFMKSFGKKGHIVDMSIG 128 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+++ +++GP G++ +D K ++ + +F + T ++ + K Sbjct: 129 FIRGDKIYITEGPLQGKEGLIVKIDRHKRIAYLRLSMFNKETTTKVGLEIISK 181 >gi|331703848|ref|YP_004400535.1| transcription antitermination protein NusG [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383992|gb|ACU78562.1| transcription antitermination protein nusg [Mycoplasma mycoides subsp. capri str. GM12] gi|256384824|gb|ACU79393.1| transcription antitermination protein nusg [Mycoplasma mycoides subsp. capri str. GM12] gi|296455387|gb|ADH21622.1| transcription antitermination protein nusG [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802403|emb|CBW54558.1| Transcription antitermination protein NusG [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 213 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 25/195 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ + E+K + + ++ + ++ V I I +VS +S + FPG Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSGK---SSIKNKFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA---------- 113 Y+ I +M++K + I++TP V GF+G+ + + E +N + Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNMLVPNLEEIEQAHEQ 135 Query: 114 ------------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ + + F+VG+ V V G + G VK++D K V + +FG Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195 Query: 162 RVTPVELAYNQVEKI 176 R T +E+++ VE I Sbjct: 196 RWTTLEVSFKNVEPI 210 >gi|206895164|ref|YP_002247282.1| transcription antitermination factor [Coprothermobacter proteolyticus DSM 5265] gi|206737781|gb|ACI16859.1| transcription antitermination factor [Coprothermobacter proteolyticus DSM 5265] Length = 182 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 14/183 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRF 60 +WYIV E E+I R +G + ++++ +P E + R + +R Sbjct: 2 KKWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60 Query: 61 FPGYVLIKAV-------MTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEA 112 +PGYV ++ + + + I+ TP V GF+ T P PV D+E+E ++ + Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQKSR- 119 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++ V + G+ V V DG G+V +VD EK +V V++ +FGR +L Q Sbjct: 120 --EQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQ 177 Query: 173 VEK 175 V K Sbjct: 178 VRK 180 >gi|291319980|ref|YP_003515238.1| transcription antitermination protein NusG [Mycoplasma agalactiae] gi|290752309|emb|CBH40280.1| Transcription antitermination protein (NusG) [Mycoplasma agalactiae] Length = 199 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 20/190 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDH------------LVTEITIPSERVVSVRK-- 50 WY++ S E K VES+ R+ ++ + + + + + + Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFKKPVLTAKEAEKKALG 65 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--- 107 + GY+ I MTDK + +++T V G +G+ + T + I Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 108 ---NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 Q+ F VGE V + DGPF G V +E +V VEV FG+ Sbjct: 126 EKEKQLIEDFNSGKIIDKFTVGEIVEIIDGPFKGTLGKVLEANESIHKVTVEVEHFGKKV 185 Query: 165 PVELAYNQVE 174 P + Y+ VE Sbjct: 186 PTDFDYSVVE 195 >gi|83950151|ref|ZP_00958884.1| transcriptional antitermination protein, putative [Roseovarius nubinhibens ISM] gi|83838050|gb|EAP77346.1| transcriptional antitermination protein, putative [Roseovarius nubinhibens ISM] Length = 169 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W++ QV NC ++ L + +P E R G+ V + R FP Sbjct: 7 KNWFLAQVKPNCAN---------IADKNLKRQGFKTFLPLEEETRQRNGKFVTAMRPLFP 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ + + T+ T + + G P+ V + ++M + A + + + Sbjct: 58 GYIFVAFDAARGFWRTVNSTYGITRLVSFGNEPTAVPLDLVSYLMQRC-DAEGKLLPATH 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V ++ GPFA+F V+ + ++ RV V + I G T V + +Q+ + Sbjct: 117 LSSGDKVTLTTGPFANFVAEVEKIAPDR-RVWVLMDIMGGQTRVAVGADQLRAV 169 >gi|20808504|ref|NP_623675.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4] gi|20517125|gb|AAM25279.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4] Length = 179 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V Y N EK+ E I D L+ + +P ++ R+G+ E + FPGY Sbjct: 16 WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V +KAVMT +V I+ V F+G G P P+T E++ Q S F+ Sbjct: 76 VFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVKRARIQ-------DDLSEEFK 128 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++DGPF +F G + + E ++++ + +F R ++ + Q+ KI Sbjct: 129 AGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMKI 178 >gi|150020536|ref|YP_001305890.1| NusG antitermination factor [Thermosipho melanesiensis BI429] gi|149793057|gb|ABR30505.1| NusG antitermination factor [Thermosipho melanesiensis BI429] Length = 356 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---- 108 + R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G P P+ D E + ++ Sbjct: 225 QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPLPLNDKEAKVLLRLSGE 284 Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 E + FE+G+ V + GPF F G VK ++ E + + V V IFGR TP Sbjct: 285 EEIPKEEKSKEVKIEFDFEIGDSVKIISGPFEGFVGTVKEINPEHNELKVTVTIFGRETP 344 Query: 166 VELAYNQVEKIV 177 V + ++VEK+V Sbjct: 345 VTVHTSEVEKVV 356 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M RWYI+Q + E A ++ ++ GL+H+++ + +P Sbjct: 1 MKKRWYILQALAGYETAAKGNLEAKIKAQGLEHVISRVLLPE 42 >gi|266620791|ref|ZP_06113726.1| putative transcription antiterminator [Clostridium hathewayi DSM 13479] gi|288867577|gb|EFC99875.1| putative transcription antiterminator [Clostridium hathewayi DSM 13479] Length = 168 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV + E+ + R ++ IP + G+ ++ FPGY Sbjct: 2 WYVIQVRTGLEESIRIQCEKLIDRHAMER----CFIPYCEKMKCYYGKWHKEKQILFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + + + ++ + + LGTG N SE E ++ Q+ Q S Sbjct: 58 LFVVSQDVEALFLELNRIIGLTKLLGTG-NMIVPLTSEEESVLKQISNDDQIVTMSKGLI 116 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V +V + +GP G + +D K R +E+ +FGR VEL +EK Sbjct: 117 VNNQVIILEGPLKGREGYICKIDRHKRRARLELHMFGRKQNVELGLEILEK 167 >gi|237734430|ref|ZP_04564911.1| nusG antitermination factor [Mollicutes bacterium D7] gi|229382660|gb|EEO32751.1| nusG antitermination factor [Coprobacillus sp. D7] Length = 173 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 4/175 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++QV + E+K + +SR ++ E IP + +G + Sbjct: 1 MYENWYVIQVRTGKEEKIKNTCEKLISR----DILEECFIPKCIRLKKYQGTWKEVDEVL 56 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 F GYV + + D++++ +K P + LG E + + S Sbjct: 57 FKGYVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLS 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+++ + GP + G++K +D K ++EV +F ++T V++ + K Sbjct: 117 QGYIEGDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGK 171 >gi|257791627|ref|YP_003182233.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|257475524|gb|ACV55844.1| NusG antitermination factor [Eggerthella lenta DSM 2243] Length = 170 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ + E I + D ++ E +P V +G+ FPGY Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +++ D++ ++ P L P+ E+ I E + S Sbjct: 58 LIVVTDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+R+ V GP G ++ ++ K ++E+ +FGR ++ V K Sbjct: 118 EGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >gi|301321402|gb|ADK70045.1| NusG family protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 213 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 25/195 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ + E+K + + ++ + ++ V I I +VS +S + FPG Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSGK---SSIKNKFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 Y+ I +M++K + I++TP V GF+G+ + + E +N + ++ Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135 Query: 116 --------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + + F+VG+ V V G + G VK++D K V + +FG Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195 Query: 162 RVTPVELAYNQVEKI 176 R T +E+++ VE I Sbjct: 196 RWTTLEVSFKNVEPI 210 >gi|308190287|ref|YP_003923218.1| transcription antitermination factor [Mycoplasma fermentans JER] gi|307625029|gb|ADN69334.1| transcription antitermination factor [Mycoplasma fermentans JER] Length = 193 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 20/187 (10%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTE--------------ITIPSERVVSVRKGRK 53 + S E K VE++ R+ ++ P E Sbjct: 2 ISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKNGEEY 61 Query: 54 VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN----- 108 + GY+ I MTD+ + +++T V G +G+ + T I Sbjct: 62 KVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKSFKKE 121 Query: 109 -QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 +++ + V+ F++GE V + DGPF G V E +V VE+ G+ TP + Sbjct: 122 IKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKKTPAD 181 Query: 168 LAYNQVE 174 Y +++ Sbjct: 182 FEYKEIK 188 >gi|323704399|ref|ZP_08115978.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323536465|gb|EGB26237.1| NusG antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 204 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 3/173 (1%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ + E K I L L + IP ++ + +V + FPG Sbjct: 23 KWYVIYTRTGDELKVKRLIE--LLFCKLKRKSIRVLIPKRAIIERKGKNRVEKIKSLFPG 80 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV IK M+ ++Y+ IK P+ + FL P+ V + EI+ I++ V S Sbjct: 81 YVFIKTCMSYELYNDIKRLPRFLKFLKDEAEPAEVREEEIKIILSLVGD-SDIVGFSTGI 139 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++G +V + DGP F G+++ +D+ K RV V + + G V+L + VE++ Sbjct: 140 KIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEEL 192 >gi|42561478|ref|NP_975929.1| transcription antitermination protein NUSG [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492977|emb|CAE77571.1| TRANSCRIPTION ANTITERMINATION PROTEIN NUSG [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 213 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 25/195 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+++ + E+K + + ++ + ++ V I I +VS + +S + FPG Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVSKSEK---SSIKNKFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-------- 115 Y+ I +M++K + I++TP V GF+G+ + + E +N + ++ Sbjct: 76 YIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETLNILVPNLEEIEQAHKQ 135 Query: 116 --------------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + + + F+VG+ V V G + G VK++D K V + +FG Sbjct: 136 EQQEENLKNEAVNKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFG 195 Query: 162 RVTPVELAYNQVEKI 176 R T +E+++ VE I Sbjct: 196 RWTTLEVSFKNVEPI 210 >gi|269115174|ref|YP_003302937.1| transcription antitermination protein [Mycoplasma hominis] gi|110810384|gb|AAZ52671.2| transcription antitermination protein [Mycoplasma hominis ATCC 23114] gi|268322799|emb|CAX37534.1| Transcription antitermination protein [Mycoplasma hominis ATCC 23114] Length = 195 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 13/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56 +WY++ S E+ +ES+ +++ +D +I + E R Sbjct: 9 KWYMISTVSGKEENVIESLKNKIAAQRMDEYFKDIRMFKEPHLSNKELEKKQRNEEFTVK 68 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD------SEIEHIMNQV 110 + GY+ + MTD ++ +++T V G +G+ N + T + + Sbjct: 69 FVNMYKGYIFLNMAMTDDTWYLVRNTQYVTGLIGSSGNKTKPTQISDKKFQLMIDKEAML 128 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 A + F+ G V +S G F G + ++ + V + FGR P E Y Sbjct: 129 LAKFKAGDIETAFKEGALVKISSGIFKDEVGEIIKNNDITQKAFVNIEQFGRKVPTEFDY 188 Query: 171 NQVE 174 +E Sbjct: 189 ADLE 192 >gi|239628060|ref|ZP_04671091.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239518206|gb|EEQ58072.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 186 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 6/176 (3%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M RWY VQV + E+ ++ + S L E IP + +G + Sbjct: 1 ME-RWYAVQVRTGREEAVLQLSKKMIDGSVLK----ECFIPYYERMKRYQGEWHKEQYIL 55 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+ + D+++ +K P + LG G P+ + E I+ ++ + S Sbjct: 56 FPGYIFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEEKV-ILQKMGGSDHIAEMS 114 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +G+ V V GP G +K +D K +E+ +FGR T V L V K+ Sbjct: 115 KGYVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170 >gi|325294360|ref|YP_004280874.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064808|gb|ADY72815.1| NusG antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 245 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 42 SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS 101 + + K+ + +PGY+ IKA + V TI+ P+V+GF+ G P V ++ Sbjct: 111 KIKCPENKVEAKIELRDKLYPGYIFIKADLDKNVQSTIRRVPRVLGFVSAGGKPVVVPEA 170 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 EI+ + +++ V + + + F++G++V + +GPF F G + +D E+ ++ V V IF Sbjct: 171 EIQAMRERLKKGVPK-IKKLKFDIGDKVKIKEGPFIGFEGSISEIDPEREKIIVLVNIFD 229 Query: 162 RVTPVELAYNQVEKI 176 R TPVEL ++Q+EKI Sbjct: 230 RQTPVELEFDQIEKI 244 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 20/40 (50%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP 41 +WY + V S E + +I L GL++ V EI IP Sbjct: 3 EKKWYSLHVQSGFENRVKANILKALKEEGLENKVEEIFIP 42 >gi|307544895|ref|YP_003897374.1| transcriptional antiterminator RfaH [Halomonas elongata DSM 2581] gi|307216919|emb|CBV42189.1| K05785 transcriptional antiterminator RfaH [Halomonas elongata DSM 2581] Length = 180 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 10/173 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY++Q S + L + EI P RV R+G+ V + FP Sbjct: 16 PRWYVIQCKSG---------ESFRAVEHLGNQGYEIFHPVLRVQKKRRGKLVWAVEPLFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I+ D + I+ T V+ + G + D E+ + + + ++V+ Sbjct: 67 YYLFIRLDRLDSNWRPIRSTRGVLKIVTFGLDTPVPVDDELVASLREHGSQEAGETATVY 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE+V +++GPF + E R V + + + +E++ +Q+++ Sbjct: 127 FRAGEQVEITEGPFKDLQAVFATHKGE-ERAIVLLNMLHKRQRLEMSVSQLKR 178 >gi|148269607|ref|YP_001244067.1| NusG antitermination factor [Thermotoga petrophila RKU-1] gi|281411675|ref|YP_003345754.1| NusG antitermination factor [Thermotoga naphthophila RKU-10] gi|147735151|gb|ABQ46491.1| transcription antitermination protein nusG [Thermotoga petrophila RKU-1] gi|281372778|gb|ADA66340.1| NusG antitermination factor [Thermotoga naphthophila RKU-10] Length = 353 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 283 Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV Sbjct: 284 EEYEEKKKPVKVEIGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 Query: 168 LAYNQVEKI 176 L ++VEKI Sbjct: 344 LHVSEVEKI 352 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M WYIV S E++ E+I ++ +G+ +LV I IP Sbjct: 1 MKKNWYIVLTMSGYEERVKENIEKKIEATGIKNLVGRIVIPE 42 >gi|193216502|ref|YP_001999744.1| transcription antitermination protein NusG [Mycoplasma arthritidis 158L3-1] gi|193001825|gb|ACF07040.1| transcription antitermination protein [Mycoplasma arthritidis 158L3-1] Length = 197 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 13/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56 +WY++ S E VES+ ++S +D EI I + Sbjct: 11 KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----- 111 + GY+ I +MTD+ ++ +++T V G +G+ + T + V+ Sbjct: 71 YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130 Query: 112 -AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 F+ G V ++ G F G + ++ + V + +GR P E+ + Sbjct: 131 AEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGRKVPTEIDH 190 Query: 171 NQVE 174 +E Sbjct: 191 ADLE 194 >gi|153208021|ref|ZP_01946555.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177'] gi|154705911|ref|YP_001424274.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111] gi|165918933|ref|ZP_02219019.1| transcriptional activator RfaH [Coxiella burnetii RSA 334] gi|212218308|ref|YP_002305095.1| transcriptional activator [Coxiella burnetii CbuK_Q154] gi|120576221|gb|EAX32845.1| transcriptional activator RfaH [Coxiella burnetii 'MSU Goat Q177'] gi|154355197|gb|ABS76659.1| transcriptional activator [Coxiella burnetii Dugway 5J108-111] gi|165917403|gb|EDR36007.1| transcriptional activator RfaH [Coxiella burnetii RSA 334] gi|212012570|gb|ACJ19950.1| transcriptional activator [Coxiella burnetii CbuK_Q154] Length = 167 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E R++ L+ I +P +V R G FP Y Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I + + I+ T V + G P+ V + E + P F+ Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSAGVPPKVSLFQ 116 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+RV + DG A + G+ + K RV + + + G+VT VE+ + V Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >gi|29654154|ref|NP_819846.1| transcriptional activator RfaH [Coxiella burnetii RSA 493] gi|29541420|gb|AAO90360.1| transcriptional activator [Coxiella burnetii RSA 493] Length = 167 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E R++ L+ I +P +V R G FP Y Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I + + I+ T V + G P+ V + E + P F+ Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSASVPPKVSLFQ 116 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+RV + DG A + G+ + K RV + + + G+VT VE+ + V Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >gi|217076740|ref|YP_002334456.1| transcription termination/antitermination factor NusG [Thermosipho africanus TCF52B] gi|217036593|gb|ACJ75115.1| transcription termination/antitermination factor NusG [Thermosipho africanus TCF52B] Length = 354 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN---- 108 + R+ FPGY+ ++ +M D+ +H ++ P +I F+ +G P P+ D E + ++ Sbjct: 224 QKVKVRKLFPGYLFVEMIMNDEFWHFVRTVPGIIDFVSSGGRPIPINDKEAKVLLRLAGI 283 Query: 109 ---QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + FEVG+ V + GPF F G VK ++ E + + V V IFGR TP Sbjct: 284 EEAPQVEKEKEIKIEFDFEVGDSVKIVSGPFEGFVGSVKEINPEHNELKVSVTIFGRETP 343 Query: 166 VELAYNQVEKI 176 V + ++VEK+ Sbjct: 344 VTVHTSEVEKV 354 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 25/42 (59%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M RWYI+Q + E A E++ ++ GL+H+++ + +P Sbjct: 1 MKKRWYILQTLAGYEATAKENLEAKIKAQGLEHVISRVLLPE 42 >gi|297520794|ref|ZP_06939180.1| transcription antitermination protein NusG [Escherichia coli OP50] Length = 66 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 37/65 (56%), Positives = 45/65 (69%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + +P FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL + Sbjct: 1 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 60 Query: 171 NQVEK 175 +QVEK Sbjct: 61 SQVEK 65 >gi|319936183|ref|ZP_08010603.1| NusG antitermination factor [Coprobacillus sp. 29_1] gi|319808757|gb|EFW05290.1| NusG antitermination factor [Coprobacillus sp. 29_1] Length = 170 Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 4/173 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++QV S E++ + +S D ++ E IP +G + F Sbjct: 1 MNWYVIQVRSGHEREIADKCRFLIS----DEILKECFIPEYICKKKFRGEWHDVRNVLFR 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + + D++++ +K P +G + + SV Sbjct: 57 GYVFLISDHIDELFNELKKIPDFTKVIGKKKETIYPLKDGEVEFLKTFGKDDHIVDMSVG 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F G+R+ +++GP G++ +D K ++ V IF T ++ + K Sbjct: 117 FIEGDRIHITEGPLQGREGLIAKIDRHKRIAYISVNIFNEETTAKVGLEIISK 169 >gi|161830667|ref|YP_001596878.1| transcriptional activator RfaH [Coxiella burnetii RSA 331] gi|161762534|gb|ABX78176.1| transcriptional activator RfaH [Coxiella burnetii RSA 331] Length = 167 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E R++ L+ I +P +V R G FP Y Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I + + I+ T V + G P+ V + E + P F+ Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSASVPPKVSLFQ 116 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+RV + DG A + G+ + K RV + + + G+VT VE+ + V Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMYSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >gi|170288283|ref|YP_001738521.1| NusG antitermination factor [Thermotoga sp. RQ2] gi|170175786|gb|ACB08838.1| NusG antitermination factor [Thermotoga sp. RQ2] Length = 353 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDREMRPILRLAGL 283 Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 Query: 168 LAYNQVEKI 176 L ++VEKI Sbjct: 344 LHVSEVEKI 352 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +WYIV S E+K E+I ++ +G+ +LV I IP Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 42 >gi|212212718|ref|YP_002303654.1| transcriptional activator [Coxiella burnetii CbuG_Q212] gi|212011128|gb|ACJ18509.1| transcriptional activator [Coxiella burnetii CbuG_Q212] Length = 167 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E R+S L+ I +P +V R G FP Y Sbjct: 7 WYLIYTKPRQE---------RISEENLERQGYRIYLPFIQVNRRRSGCYQLITEPLFPRY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I + + I+ T V + G P+ V + E + P F+ Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRFGGIPAKVPPD-FVQFLKNNETSAGVPPKVSLFQ 116 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+RV + DG A + G+ + K RV + + + G+VT VE+ + V Sbjct: 117 KGQRVQIIDGVMAGYEGVFEMHSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >gi|257791667|ref|YP_003182273.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|317487867|ref|ZP_07946459.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|325830645|ref|ZP_08164066.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] gi|257475564|gb|ACV55884.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|316912993|gb|EFV34510.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|325487391|gb|EGC89833.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] Length = 170 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+ QV + E +E + S ++ +P V+ +G +R FPGY Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMED----CFMPEYEVMWKIRGEWRLVKRLLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + + + P I LG EN + S + Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMDGNHTVRMSEGYI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+++ V+ GP F G ++ +D K R +++V +FGR P + V K Sbjct: 118 SGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRK 168 >gi|128916|sp|P29397|NUSG_THEMA RecName: Full=Transcription antitermination protein nusG gi|48183|emb|CAA77858.1| NusG [Thermotoga maritima MSB8] Length = 353 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 283 Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 Query: 168 LAYNQVEKI 176 L ++VEKI Sbjct: 344 LHVSEVEKI 352 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +WYIV S E+K E+I ++ +G+ +LV I IP Sbjct: 1 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 42 >gi|226941728|ref|YP_002796802.1| RfaH [Laribacter hongkongensis HLHK9] gi|226716655|gb|ACO75793.1| RfaH [Laribacter hongkongensis HLHK9] Length = 172 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 15/177 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V E + + L + +P +R+GR V SE FP Sbjct: 9 MHWYLVHTKPRQE---------QCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALFP 59 Query: 63 GYVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 Y+ I+ + +DK + I+ T V + G P+ + D IE + R Sbjct: 60 RYLFIRLGLGQSDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGH---DAARANPE 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F GERV ++DGPFA GI + D E SRV V + R +A + K+V Sbjct: 117 PLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRKVV 172 >gi|15643219|ref|NP_228263.1| N utilization substance protein G [Thermotoga maritima MSB8] gi|4980959|gb|AAD35536.1|AE001723_6 N utilization substance protein G [Thermotoga maritima MSB8] Length = 354 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 R+ FPGYV ++ +M D+ Y+ ++ P V+GF+ +G P PV D E+ I+ Sbjct: 225 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 284 Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV Sbjct: 285 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 344 Query: 168 LAYNQVEKI 176 L ++VEKI Sbjct: 345 LHVSEVEKI 353 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +WYIV S E+K E+I ++ +G+ +LV I IP Sbjct: 2 MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPE 43 >gi|169831854|ref|YP_001717836.1| NusG antitermination factor [Candidatus Desulforudis audaxviator MP104C] gi|169638698|gb|ACA60204.1| NusG antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 173 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 10/177 (5%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +W V E A + E+ +P V R K + Sbjct: 1 MALQWCAVNTKPKKEDFAARQLEA---------KGLEVFLPRISVTRKRGASKFSLWEPL 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 FPGY+ +K + + TP V L G+ P PV D I I +V + P Sbjct: 52 FPGYLFVKLLPEPVQVQRVNWTPGVRRLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKP 111 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G RV V GPFA G+V+ + RV V + + R T VE+ ++++ Sbjct: 112 QAEFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168 >gi|157363336|ref|YP_001470103.1| NusG antitermination factor [Thermotoga lettingae TMO] gi|157313940|gb|ABV33039.1| NusG antitermination factor [Thermotoga lettingae TMO] Length = 354 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114 +RR FPGYV ++ +M D+ + ++ P +I F+ +G P + E I+ Sbjct: 227 THKRRLFPGYVFVEMMMNDETWQFARNVPSIIDFVSSGGQPLEMKPREARVILRLAGLET 286 Query: 115 QRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + F +G+ V ++ GPF F G+VK +D EK + V V IFGR TPV + Sbjct: 287 YEEKMKPIKVELDFHIGDVVKITSGPFEDFAGVVKEIDAEKQELRVAVTIFGRETPVTVK 346 Query: 170 YNQVEKI 176 ++VE+I Sbjct: 347 ISEVERI 353 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +W+I++ + E+ A E++ ++ +G + I +P Sbjct: 1 MKKKWFILRTMAGFEQTAKENLEAKIRSTGFERYFGRILVPE 42 >gi|13477026|ref|NP_108596.1| transcription antitermination factor nusG [Mesorhizobium loti MAFF303099] gi|14027789|dbj|BAB54382.1| transcription antitermination factor; NusG [Mesorhizobium loti MAFF303099] Length = 182 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY+++V E +A ++ L + ++ ++ ++R + F Sbjct: 11 EARWYVLRV----EDRADIAVDKLLGEANVERVMLHTECEAKRRGRRKHQSLEPVRVPSF 66 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 PGY+ +K V + ++ V+G +G + PSPV++ EI ++E + V + Sbjct: 67 PGYIFVKVVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEAIAVLT 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G++V + GPFA F +V + +K +VHVEV IFGR TP+ A +V K+ Sbjct: 127 NALKAGDKVSIDSGPFAGFEAVVL-MLGDKHKVHVEVDIFGRKTPIGFALAEVTKL 181 >gi|256822138|ref|YP_003146101.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069] gi|256795677|gb|ACV26333.1| transcriptional acivator RfaH [Kangiella koreensis DSM 16069] Length = 167 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 12/174 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ E +A+E + + +P V + +G++ + F Sbjct: 5 EKSWYLINSKPKQELRALEHLK---------NQEINCVLPVLEVERIIRGKRQKAIEPLF 55 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ ++ + + I+ T V F+ G P V DS +EH++ + P+ + Sbjct: 56 PGYLFVELQTNGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLL--ILDTSFTPIETN 113 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G++V ++DGPF G+ K + EK R V + I G+VT +EL Q+ K Sbjct: 114 APGAGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENKQLRK 166 >gi|222099194|ref|YP_002533762.1| Transcription antitermination protein nusG [Thermotoga neapolitana DSM 4359] gi|221571584|gb|ACM22396.1| Transcription antitermination protein nusG [Thermotoga neapolitana DSM 4359] Length = 353 Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 +R+ FPGYV I+ +M D+ Y+ ++ P V+GF+ +G P PV D EI I+ Sbjct: 224 YKTKKRKLFPGYVFIEMIMNDEAYNFVRSVPYVMGFVSSGGQPIPVKDKEIRPILRLAGL 283 Query: 113 AVQRPVSS-----VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + F+VG+ V + GPF F G++K +D E+ + V V IFGR TPV Sbjct: 284 EEYEEKKKPVKVEMGFKVGDTVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 Query: 168 LAYNQVEKI 176 L ++VEKI Sbjct: 344 LHVSEVEKI 352 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M WYI+ S E+K E+I ++ +G+ +LV I IP Sbjct: 1 MKKNWYIIVTMSGYEEKVKENIERKIEATGIRNLVGRIVIPE 42 >gi|117621236|ref|YP_855455.1| transcriptional activator RfaH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562643|gb|ABK39591.1| transcriptional activator RfaH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 183 Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 10/174 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+ E +A R+ L+ E P + +R+G++V FP Sbjct: 19 KKWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFP 69 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I + + T+K T + + G + ++ + +M++ ++ R + Sbjct: 70 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASL 129 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V + GP A F I D +K R + V + + T ++ Sbjct: 130 PTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFDNQSFRRL 182 >gi|307297340|ref|ZP_07577146.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306916600|gb|EFN46982.1| NusG antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 355 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%) Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + R +PGYV I+ +M ++ ++ +K+TP V+ F+ G P + + EI+ ++ V Sbjct: 225 FKITRTRLYPGYVFIEMIMNEETWNLVKNTPNVVNFVSVGGQPVQLKEKEIKALLRLVGI 284 Query: 113 AVQRPVS------SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V F+VGE V ++ GPF F G V ++D ++ + V V IFGR TPV Sbjct: 285 EEYEEHMGGPVKIEVEFDVGEVVRINSGPFEDFVGKVTDLDPDRQELKVVVSIFGRETPV 344 Query: 167 ELAYNQVEKIV 177 L+ ++VEKIV Sbjct: 345 ILSLSEVEKIV 355 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPS 42 M +W+I+Q YS E E+I ++ G H+ +I +P Sbjct: 1 MRKKWFIIQTYSGLENSIREAIQIKIESFGFSHMFGKILVPE 42 >gi|47458980|ref|YP_015842.1| transcription antitermination protein NusG [Mycoplasma mobile 163K] gi|47458308|gb|AAT27631.1| transcription antitermination factor [Mycoplasma mobile 163K] Length = 215 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 13/184 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERV-------VSVRKGRKVNS 56 WY + V S E+K +ES+ ++ G+ ++ EI I Sbjct: 28 HWYTISVVSGKEEKVLESLNNKIKSLGMGEVIKEIKIFQTPYLTEKELEKKRNGENFKVK 87 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 + + + GY+ +K +MTD V+ +++T V G +G+ + T ++ ++ Sbjct: 88 QEKLYKGYIFMKMIMTDDVWFMVRNTENVTGLIGSSGKGTKPTPISERKFSKMLDFEKKK 147 Query: 117 P------VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + F++G V +GPF GI+ ++ K+ + + FGR TPVE + Sbjct: 148 IEEFGSGNYNSKFKIGLVAKVLEGPFKDEEGIILENNDIKALATIAIESFGRKTPVEFEH 207 Query: 171 NQVE 174 ++ Sbjct: 208 KNLK 211 >gi|145300265|ref|YP_001143106.1| transcriptional activator RfaH [Aeromonas salmonicida subsp. salmonicida A449] gi|142853037|gb|ABO91358.1| transcriptional activator RfaH [Aeromonas salmonicida subsp. salmonicida A449] Length = 165 Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 10/167 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+ E +A R+ L+ E P + +R+G++V FP Sbjct: 2 KKWYLAYCKPKEEARA---------RAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I + + T+K T + + G+ + ++ + +M++ ++ R + Sbjct: 53 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGKEWTAISSQLVYQLMSRDDSDEARASYANL 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 G++V + GP A F I D EK R + V + + T Sbjct: 113 PTQGDKVLIESGPLAGFEAIYLEPDGEK-RAILLVSLLNQETSSSFD 158 >gi|330831026|ref|YP_004393978.1| transcriptional activator RfaH [Aeromonas veronii B565] gi|328806162|gb|AEB51361.1| Transcriptional activator RfaH [Aeromonas veronii B565] Length = 166 Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 10/174 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+ E +A R+ LD E P + +R+G++V FP Sbjct: 2 KKWYLAYCKPKEEARA---------RAHLDAQGIESYYPMVEIEKLRRGKRVPVREPMFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I + + T+K T + + G +P++ + +M++ ++ R + Sbjct: 53 NYLFIFVDLEEVTPVTLKSTRGISRIIHFGSEWTPISSKLVYQLMSRDDSDEARASYASL 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V + +GP A F I D EK R + V + R T + ++ Sbjct: 113 PCSGDKVLIEEGPLAGFEAIYMEPDGEK-RAILLVSLLNRETTSSFDNHTFRRL 165 >gi|257792184|ref|YP_003182790.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|257476081|gb|ACV56401.1| NusG antitermination factor [Eggerthella lenta DSM 2243] Length = 172 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ EK ++ I + + L+ E IP V +G PGY Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + K+ ++ PK LG + +P+ D E+ I + + S Sbjct: 60 IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 119 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ + + +GP + G++K +D K ++E+ I GRV V++ V K Sbjct: 120 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >gi|20807217|ref|NP_622388.1| transcription antiterminator [Thermoanaerobacter tengcongensis MB4] gi|20515721|gb|AAM23992.1| Transcription antiterminator [Thermoanaerobacter tengcongensis MB4] Length = 171 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S CE+K + I E+ IP +++ KG + + FP Sbjct: 2 KKWYVLFTKSGCEEKVGKIIKKIWENE------IEVLIPRRKIIERIKGEEREKIKLLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV +K MT+ YH I K FL + P+ V + E+ I+N + S Sbjct: 56 GYVFVKTEMTEAKYHEITSVLKQGVFLKEDKMPASVKEEEMRVILN-LTGDSDLIDVSRG 114 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + G+RV + +GP + G ++ VD+ K R V + G V V+L VEKIV Sbjct: 115 VKEGDRVKIIEGPLLGYEGFIQKVDKRKKRAKVIFKVAGEVKSVDLGLEIVEKIV 169 >gi|303238542|ref|ZP_07325076.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2] gi|302593940|gb|EFL63654.1| NusG antitermination factor [Acetivibrio cellulolyticus CD2] Length = 176 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 8/176 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY + V + E + + +P ++ VRKG+ + FFP Sbjct: 1 MSWYALHVKTGAENDVENFL-----HYNFESNECHSIVPKRKLTEVRKGKCYEVIKIFFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVLI M+ +Y+ I+ P V L E + + ++ S Sbjct: 56 GYVLINLDMSTDIYYIIRKIPNVYTVLKQDGEYYSRISDEEINPLLKLLKDSDLIDYSKI 115 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA---YNQVEK 175 F +V V+ GP G+++ VD+ + R V + G V+L + +EK Sbjct: 116 FIENSKVSVNSGPLLGLEGLIRKVDKRRGRAKVALNFMGSEKTVDLGVEILSSLEK 171 >gi|121999044|ref|YP_001003831.1| NusG antitermination factor [Halorhodospira halophila SL1] gi|121590449|gb|ABM63029.1| transcription antitermination protein nusG [Halorhodospira halophila SL1] Length = 175 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 11/171 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V E++A LDH +P R R+ R FP Y Sbjct: 15 WYLVYSKPRQEERA---------WWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRY 65 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I+ + + I+ T V G + G P+ V D ++ I ++E + Sbjct: 66 LFIRLAAGLEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPE-PLQ 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GERV V DGPF S+ GI RV + + + G+ T + ++ +Q+E+ Sbjct: 125 PGERVRVLDGPFQSYEGIF-RASRSDERVMILLDVAGQHTTLTVSQHQIER 174 >gi|46446233|ref|YP_007598.1| transcription antitermination protein NusG [Candidatus Protochlamydia amoebophila UWE25] gi|46399874|emb|CAF23323.1| probable transcription antitermination factor NusG [Candidatus Protochlamydia amoebophila UWE25] Length = 124 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +PGY+LIK ++D+ + +K+T VI FLG G+ P+P+TD E+ I+ +E ++ Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQ 59 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV-ELAYNQVEKI 176 FEVG+RV ++DG F +F G V V +K R+ V V IFGR T V +L + QVE+I Sbjct: 60 KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117 >gi|317487905|ref|ZP_07946497.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|316913031|gb|EFV34548.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] Length = 170 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ + E I + ++ E +P V +G+ FPGY Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----GDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +++ D++ ++ P L P+ E+ I E + S Sbjct: 58 LIVVTDRVDELESQLRRVPAFARVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+R+ V GP ++ ++ K ++E+ +FGR ++ V K Sbjct: 118 EGDRIIVLKGPLVGRESWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >gi|317490110|ref|ZP_07948599.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|325833656|ref|ZP_08166105.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] gi|316910815|gb|EFV32435.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|325485580|gb|EGC88049.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] Length = 170 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ EK ++ I + + L+ E IP V +G PGY Sbjct: 2 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + K+ ++ PK LG + +P+ D E+ I + + S Sbjct: 58 IFVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVM 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ + + +GP + G++K +D K ++E+ I GRV V++ V K Sbjct: 118 EGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 168 >gi|146280091|ref|YP_001170248.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC 17025] gi|145558332|gb|ABP72943.1| hypothetical protein Rsph17025_4091 [Rhodobacter sphaeroides ATCC 17025] Length = 174 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 11/171 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ N R++ L + P++ R ++ ++ FPGY Sbjct: 13 WYLVQTKPN---------AFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGY 63 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ + I T V + T N + + Q A + Sbjct: 64 LFVRFNPEFPQWRAINATYGVSRLV-TFGNIPSPVPHALIAGLRQRCANDGTLLPPEQLS 122 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +G+RV + GPFA + V+ ++ +K RV + + I G T ++ ++K Sbjct: 123 LGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQK 172 >gi|220924919|ref|YP_002500221.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219949526|gb|ACL59918.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 230 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGG-RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M RW++V + ++ +++ + L V V VR GR + + Sbjct: 54 MAAVRWHLVDCRAGKARQFADALAAGAIPALRLSEEV----------VRVRSGRPIRTRM 103 Query: 59 RFFPGYVLIKAVMTDKVYHTIKD--TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-- 114 F + + + H ++D ++ G E V E++ + V Sbjct: 104 PLFGRLLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPP 163 Query: 115 -----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 ++ FE+GE V V+DGPFASF+G+V+ +D E + V V IFGR TPV L Sbjct: 164 AERRTGAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLE 223 Query: 170 YNQVEKI 176 QVEK+ Sbjct: 224 PTQVEKL 230 >gi|295789221|pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex Length = 63 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 42/58 (72%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVEL ++QVEK Sbjct: 5 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 62 >gi|160876145|ref|YP_001555461.1| transcriptional acivator RfaH [Shewanella baltica OS195] gi|160861667|gb|ABX50201.1| transcriptional acivator RfaH [Shewanella baltica OS195] gi|315268341|gb|ADT95194.1| transcriptional acivator RfaH [Shewanella baltica OS678] Length = 168 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++GRK FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q ++ + Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEAL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ +DGPF GI + K R HV I G++ V + VE++ Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPEQSVERV 166 >gi|153001420|ref|YP_001367101.1| transcriptional acivator RfaH [Shewanella baltica OS185] gi|217972648|ref|YP_002357399.1| transcriptional acivator RfaH [Shewanella baltica OS223] gi|151366038|gb|ABS09038.1| transcriptional acivator RfaH [Shewanella baltica OS185] gi|217497783|gb|ACK45976.1| transcriptional acivator RfaH [Shewanella baltica OS223] Length = 168 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++GRK FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q ++ + Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKELTPSQTVLAEAL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ +DGPF GI + K R HV I G++ V + VE+I Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQIKTVTVPQQSVERI 166 >gi|23336710|ref|ZP_00121908.1| COG0250: Transcription antiterminator [Bifidobacterium longum DJO10A] Length = 128 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 12/127 (9%) Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV------- 114 PGYVLI+ + +++T V GF+G ++P+P++ E+ +M + A+ Sbjct: 1 PGYVLIRMWPDENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGD 60 Query: 115 -----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 ++ V + VG++V V+DGPFA+ +V +V+ ++ V V IFGR TPVEL Sbjct: 61 KPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELG 120 Query: 170 YNQVEKI 176 ++QV+K+ Sbjct: 121 FHQVQKL 127 >gi|257456059|ref|ZP_05621262.1| transcription antitermination protein, NusG family [Treponema vincentii ATCC 35580] gi|257446517|gb|EEV21557.1| transcription antitermination protein, NusG family [Treponema vincentii ATCC 35580] Length = 186 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 5/170 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y VQV + E + ++ + ++ + P + +KG + + FPGY+ Sbjct: 4 YAVQVKTGKEP----ELLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYI 59 Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 ++ ++ + ++ TP FL +NP P+ D+++ + + + S V+F+ Sbjct: 60 FLEIDDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYFD 119 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 R+CV DG G + VD K R V + ++ P++LA++ +E Sbjct: 120 ANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIE 169 >gi|146282124|ref|YP_001172277.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501] gi|145570329|gb|ABP79435.1| transcriptional activator RfaH [Pseudomonas stutzeri A1501] Length = 169 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 12/168 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY++Q E +A E + E P + + R G+ + F Sbjct: 6 TARWYLIQTKPRQEARAEEHLLR---------QHFECYRPLKASAATRSGQGAKAGEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ T ++ I+ T V + G P+PV D IE + ++ + P + Sbjct: 57 PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPAA-- 114 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 F+ GERV VS G F+ I + D E R + + + R V + Sbjct: 115 NFKPGERVQVSGGSFSDIEAIFVSSDGE-ERSVILLNLLQREQKVRVP 161 >gi|91794023|ref|YP_563674.1| transcriptional activator RfaH [Shewanella denitrificans OS217] gi|91716025|gb|ABE55951.1| transcription antitermination protein nusG [Shewanella denitrificans OS217] Length = 166 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ E +P + +G+ E FP Sbjct: 2 KAWYLLYCKPKSELRAQQNLAL---------QQVESYLPVIKEQKTARGKTKVVEVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I T+ +TI T +G E +P+ D+ I I ++V + Sbjct: 53 NYLFIHFDPTEFSVNTIHSTRGASRIIGCKELMTPINDAIIAEIKHRVGNHQVELQPEL- 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+RV GPFA + I + + +K R HV I G+ +++ +Q+ Sbjct: 112 -VKGDRVRFIQGPFADLDAIFEEHNGDK-RCHVLFTIMGQQKSLQVNLDQI 160 >gi|326392210|ref|ZP_08213671.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325991749|gb|EGD50280.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 102 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 6/108 (5%) Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128 VMTD ++ +++T V GF+G G P P+T++E+ + ++ ++V V + Sbjct: 1 MVMTDDTWYVVRNTRGVTGFVGPGSKPVPLTEAEVRAL------GIKEIPTAVDLNVKDT 54 Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V GPF +F G+V+ + E+ + V + +FGR TPVE Q+++I Sbjct: 55 VRVISGPFENFIGVVQEIYPERQKAKVLISMFGRETPVEFDLVQLQRI 102 >gi|297184776|gb|ADI20886.1| transcription antiterminator [uncultured gamma proteobacterium EB080_L93H08] Length = 85 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 39/81 (48%), Positives = 55/81 (67%) Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 PSP+ + E I+NQ E + P ++ ++ GE V V DGPF FNG+V+NV+ EK+++ Sbjct: 4 PSPIPEHEALRILNQAEDSKGMPRPTITYQPGEVVRVIDGPFNDFNGVVENVNYEKNKLS 63 Query: 155 VEVVIFGRVTPVELAYNQVEK 175 V V I GR TPV+L +NQVEK Sbjct: 64 VAVQILGRPTPVDLNFNQVEK 84 >gi|313639747|gb|EFS04501.1| transcription antitermination protein NusG [Listeria seeligeri FSL S4-171] Length = 111 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 ++ VMTD ++ +++TP V GF+G+ P+P+ E + I+ + +R + F Sbjct: 1 MEIVMTDDSWYVVRNTPGVTGFVGSSGSGSKPTPLLPEEADRILKSMGMVEKR--AEADF 58 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 E+GE V V +GPFA F+G V +D +K + V V +FGR TPVE+ +NQ+EKI Sbjct: 59 EIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKI 111 >gi|85712703|ref|ZP_01043748.1| Transcription antiterminator RfaH [Idiomarina baltica OS145] gi|85693435|gb|EAQ31388.1| Transcription antiterminator RfaH [Idiomarina baltica OS145] Length = 165 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 15/170 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++ E +A+E++ P V + +G++ FPGY Sbjct: 9 WYVLKTKPRQEDRALENLAR---------QGFNSFGPKLAVERILRGKRTVRTEPMFPGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +++ ++ ++ T V + G+ + S I+ I + + E Sbjct: 60 IFVQSDELATQFYKLRSTYGVHSVVRFGDRIPKLPQSWIDSIRGM-----EASAETQAPE 114 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG++V +++GPF F V +D E SR V + + ++Y++++ Sbjct: 115 VGDQVEITEGPFKGFLAKVVALDGE-SRCFVLLEWMQKEVKASMSYSELQ 163 >gi|168700805|ref|ZP_02733082.1| transcription antitermination protein NusG [Gemmata obscuriglobus UQM 2246] Length = 223 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 26/199 (13%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK------------ 50 +WY ++V S E +I +++ GL+ + +I +P E+V+ + Sbjct: 24 KKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTGEYN 83 Query: 51 --GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS------PVTDSE 102 RKV + + F GY+ + D++ + I++T V FL P+ P++D+E Sbjct: 84 TVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMSDAE 143 Query: 103 IEHIMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKS-----RVHVE 156 ++ ++ + + P V FE G+RV + +G F G VK+V K +V V Sbjct: 144 VKQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKVIVT 203 Query: 157 VVIFGRVTPVELAYNQVEK 175 V +GR VEL Y QV K Sbjct: 204 VTFWGRPLDVELEYWQVTK 222 >gi|220926074|ref|YP_002501376.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219950681|gb|ACL61073.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 255 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 8/172 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW+++ ++A + + + + + GR+ +R Sbjct: 91 RWHVMVAKPRFARRAAKDLTK--------AGIPAVLTDERVELVEESGRRRIVKRPLLRR 142 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 + + ++T V + G + ++ + A F Sbjct: 143 VLFVGLPRCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNAF 202 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ + + GPFASF+GI+++ D R+ V V IFGR +PV L +++VE+ Sbjct: 203 EPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVER 254 >gi|258517294|ref|YP_003193516.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771] gi|257780999|gb|ACV64893.1| NusG antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 164 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 10/173 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ + E+ R+ + + +P +V R+G ER FP Sbjct: 1 MHWYVIHCLTGHEEDV----RSRVK----EKDIARAVVPRRLMVERRQGGWQYVERVVFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++A MT Y+ +++ P VI LGT P P+ +E+ + +S VF Sbjct: 53 GYVFVQAHMTPAAYYAMRNLPGVIRVLGT-SRPVPLMGNEVTLFLKLCRDGDPLGLSEVF 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G V V GP G + +D + R V + + G VELA + ++K Sbjct: 112 VK-GGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163 >gi|114769689|ref|ZP_01447299.1| transcriptional antitermination protein, putative [alpha proteobacterium HTCC2255] gi|114549394|gb|EAU52276.1| transcriptional antitermination protein, putative [alpha proteobacterium HTCC2255] Length = 166 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ W+I+Q N +A L E +P + S + R +N+ R Sbjct: 1 MSKEWFILQFKPNSHHQA---------TKNLTRQGFETFLPLTDITSRKTSRFINTTRPL 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+ I T +H I +T V + N + + +E++M + + + Sbjct: 52 FPGYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRC-DLSSKILPV 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G++V + GPFA+F V+ + + R+ V + + R T ++ + +E Sbjct: 111 ENLKKGDQVKILHGPFANFIATVETYETD-QRIWVLMDLMSRKTKIQTPLDALE 163 >gi|114564008|ref|YP_751522.1| NusG antitermination factor [Shewanella frigidimarina NCIMB 400] gi|114335301|gb|ABI72683.1| transcription antitermination protein nusG [Shewanella frigidimarina NCIMB 400] Length = 170 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ E +P + + + FP Sbjct: 2 KSWYLLYCKPRHEVRAQQNLAL---------QEVESYLPMITQQKMVRNKPQMVTAPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I I +T +G E+ +P+ D I + +V+ V P Sbjct: 53 SYLFIYFDPLITSVSKIHNTRGANRIVGCREDMTPIDDRIISALKRRVQGYV--PEEVKP 110 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V DGPF I + +K R HV I G+ + + ++ + Sbjct: 111 LGKGDKVKFVDGPFKDLEAIFDENNPDK-RCHVLFNIMGQQKRILVELTNLQAV 163 >gi|296445155|ref|ZP_06887115.1| NusG antitermination factor [Methylosinus trichosporium OB3b] gi|296257329|gb|EFH04396.1| NusG antitermination factor [Methylosinus trichosporium OB3b] Length = 183 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 11/168 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY+VQ E V L+ +P + + F Sbjct: 20 TRRWYVVQTRPQREAGVV---------LQLEAQNFRAFLPRVTRTIRHARKLRMVQAPVF 70 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ + + + ++ T +G + G++ T + + A + Sbjct: 71 PGYLFVSLDLQRDRWRSVNGTFGAVGLI-MGDDYPAPTPHGVVEQLLSCADARGACRFDL 129 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 G++V V GPFA G + + + RV V + I G PV L Sbjct: 130 DLAEGQKVKVLAGPFADAIGSLVRL-GDNERVQVLLDIMGGRVPVTLE 176 >gi|313900768|ref|ZP_07834260.1| transcription termination/antitermination factor NusG [Clostridium sp. HGF2] gi|312954438|gb|EFR36114.1| transcription termination/antitermination factor NusG [Clostridium sp. HGF2] Length = 170 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 4/173 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+ QV S E+K VE +S+ L IP G + + F Sbjct: 1 MKWYVGQVRSGHERKIVEKCRTMISKDVLQD----CFIPEYIRKKKYMGNWHDVKDILFK 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ + D++ +K P + +G + + E M S Sbjct: 57 GYIFMITDQIDQLNIELKKIPDFVKVIGKKKADIFPLNEEEVAFMKSFGKENHVVEMSTG 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE++ +++GP G + +D K ++++ +F + T ++ + K Sbjct: 117 FIQGEQIFITEGPLQGKEGQIIRIDRHKRVAYLQLSMFNKETTTKVGLEIISK 169 >gi|77165942|ref|YP_344467.1| transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707] gi|76884256|gb|ABA58937.1| Transcriptional activator RfaH [Nitrosococcus oceani ATCC 19707] Length = 174 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 + + WY++ E RL++ L+ E +P R + R R++ + Sbjct: 7 SKKFWYLIYCKPRQE---------RLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPL 57 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I + +I+ T VI + G P+ V D+ I + + + ++S Sbjct: 58 FPRYLFIHLDTEKDNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLAS 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G++V V +G A GI + K R H+ + I G+ E+ N ++++ Sbjct: 118 PDFRKGQQVLVEEGLLAGHEGIWLTSNG-KKRAHILLEIMGKQIKTEVNENWLKRL 172 >gi|300113352|ref|YP_003759927.1| NusG antitermination factor [Nitrosococcus watsonii C-113] gi|299539289|gb|ADJ27606.1| NusG antitermination factor [Nitrosococcus watsonii C-113] Length = 174 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 11/176 (6%) Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 + + WY++ E RL++ L+ E +P R + R R++ + Sbjct: 7 SKKFWYLIYCKPRQE---------RLAQENLERQSFETYLPLVRQMRRRAYRRIATVEPL 57 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ + + +I+ T VI + G P+ V D+ I + + ++ Sbjct: 58 FPRYLFVHLDAEKDDWGSIRSTIGVISLVRFGAQPAQVPDTLISELQAHDAPDGIQNLAR 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ G++V V +G A GI + K R H+ + I G+ E+ N ++++ Sbjct: 118 PGFQKGQQVLVEEGLLAGHEGIWLTSNG-KERAHILLEIMGKQIKTEVNENWLKRL 172 >gi|327480363|gb|AEA83673.1| transcriptional activator RfaH [Pseudomonas stutzeri DSM 4166] Length = 169 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T RWY++Q E +A E + E P + + R + + F Sbjct: 6 TARWYLIQTKPRQEARAEEHLLR---------QHFECYRPLKASAATRSAQGAKAGEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ T ++ I+ T V + G P+PV D IE + ++ + P + Sbjct: 57 PGYLFIRLDSTHDNWYPIRSTRGVNRVVSFGGQPTPVRDELIEQLRQRLAQDERAPAA-- 114 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 F+ GERV VS G F+ I + D E R + + + R V + Sbjct: 115 NFKPGERVQVSGGSFSEIEAIFVSSDGE-ERSVILLNLLQREQKVRVP 161 >gi|300309822|ref|YP_003773914.1| transcription activator protein [Herbaspirillum seropedicae SmR1] gi|300072607|gb|ADJ62006.1| transcription activator protein [Herbaspirillum seropedicae SmR1] Length = 165 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 14/177 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+V E A +++ E +P VR+G S FP Sbjct: 1 MQWYLVHTKPRQEVCAQQNLEQ---------QGYECYLPLLHKEKVRRGALTLSSEALFP 51 Query: 63 GYVLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 Y+ I+ A +T K + I+ T V + G P+ +++ + + Q + Sbjct: 52 RYLFIRLGAGLTSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLAL--QAAQQSEAAPVE 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 F G+RV + +G + GI D E+ RV V + + + V +A + KI+ Sbjct: 110 RAFTPGQRVQLVEGALSGIEGIFLEADGER-RVMVLIEMLSKPVSVAVAPGSLRKIL 165 >gi|113969657|ref|YP_733450.1| transcription antitermination protein nusG [Shewanella sp. MR-4] gi|114046887|ref|YP_737437.1| transcription antitermination protein nusG [Shewanella sp. MR-7] gi|113884341|gb|ABI38393.1| transcription antitermination protein nusG [Shewanella sp. MR-4] gi|113888329|gb|ABI42380.1| transcription antitermination protein nusG [Shewanella sp. MR-7] Length = 166 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++G+K FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121 Y+ I + + T V + E +P+ D I I + Q + Sbjct: 53 NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ DGPF GI + K R V I G++ + + VE++ Sbjct: 113 ELKTGEKIRFKDGPFIDLEGIFQEKCPNK-RCQVLFNIMGQIKTLTVPMQSVERV 166 >gi|226313581|ref|YP_002773475.1| transcription antitermination protein [Brevibacillus brevis NBRC 100599] gi|226096529|dbj|BAH44971.1| putative transcription antitermination protein [Brevibacillus brevis NBRC 100599] Length = 177 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 14/181 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY + V S E+ + + + L +V + +P + G N + FFP Sbjct: 1 MKWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVP-----EKKSGIVYNVLKNFFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP--------VTDSEIEHIMNQVEAAV 114 GYVLI+ MT++++H IK P+ + + G S + + EI I+ + Sbjct: 56 GYVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGE 115 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 S V+ E +V V GP GI+K VD+ K+R + + G +++ + Sbjct: 116 VVDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILS 174 Query: 175 K 175 K Sbjct: 175 K 175 >gi|292490822|ref|YP_003526261.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4] gi|291579417|gb|ADE13874.1| transcriptional activator RfaH [Nitrosococcus halophilus Nc4] Length = 172 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%) Query: 2 TPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 + R WY++ E L++ L+ E +P R + R R++ Sbjct: 7 SKRSWYLIWCKPRKE---------HLAQENLERQRFETYLPLVRQLRRRAHRRITVVEPL 57 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I + +I+ T V + G+ P+ V D I+ + + S Sbjct: 58 FPRYLFIHLDKEKDNWSSIRSTIGVTALVRFGDQPAQVPDRLIKELQAHESPDGIHDLPS 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F+ G+++ + +GP A GI + K R V + I G+ E+ N + Sbjct: 118 RSFQQGQKIRIEEGPLAGHEGIWLASNG-KERAQVLLEIMGKQIKTEMNQNWL 169 >gi|114319257|ref|YP_740940.1| transcription antitermination protein nusG [Alkalilimnicola ehrlichii MLHE-1] gi|114225651|gb|ABI55450.1| transcription antitermination protein nusG [Alkalilimnicola ehrlichii MLHE-1] Length = 177 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 11/173 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E +R L +P RVV R R+V FP Y Sbjct: 15 WYLIYTKPRQE---------EAARDNLGRQGFHAWLPRVRVVKRRGTRRVPVVEPMFPRY 65 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVSSVFF 123 + ++ + + I T V + G P+ V + + + + + Sbjct: 66 LFVELDSAYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQP 125 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V+ G FA + + + + RV V + + G+ + V L + ++ + Sbjct: 126 RAGDTVRVAHGAFAGYEAVFQARSG-RERVLVLLEVAGKQSRVTLPADDIDPV 177 >gi|117919822|ref|YP_869014.1| transcription antitermination protein nusG [Shewanella sp. ANA-3] gi|117612154|gb|ABK47608.1| transcription antitermination protein nusG [Shewanella sp. ANA-3] Length = 166 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++G+K FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121 Y+ I + + T V + E +P+ D I I + Q + Sbjct: 53 NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHEL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ DGPF GI + K R HV I G+ V + + V ++ Sbjct: 113 ELKTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQSKVVTVPQDSVVRL 166 >gi|330960426|gb|EGH60686.1| transcriptional activator RfaH [Pseudomonas syringae pv. maculicola str. ES4326] Length = 176 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q EK+A E + E P + R + E FPG Sbjct: 15 RWYLIQTRPRQEKRAEEHLRR---------QRFECYRPLKAAAKPSLIRVQSEEA-LFPG 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I+ ++ I+ T V + G +P P+ D IE I +++ P F Sbjct: 65 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPIHDQLIEQIRDRLT----LPQRHTAF 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V ++ G F I D R + + + R V L + + +I Sbjct: 121 AQGEQVMITTGSFCDVEAIFLTADG-NERAVILLNLLQRQQKVVLPISSLSRI 172 >gi|126175096|ref|YP_001051245.1| transcriptional acivator RfaH [Shewanella baltica OS155] gi|125998301|gb|ABN62376.1| transcription antitermination protein nusG [Shewanella baltica OS155] Length = 168 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P +GRK FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSHRGRKQVCRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q ++ + Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ +DGPF GI + K R H+ I G+V V + ++++ Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166 >gi|269102125|ref|ZP_06154822.1| transcriptional activator RfaH [Photobacterium damselae subsp. damselae CIP 102761] gi|268162023|gb|EEZ40519.1| transcriptional activator RfaH [Photobacterium damselae subsp. damselae CIP 102761] Length = 200 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 12/176 (6%) Query: 1 MTPRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M WY++ S E+ + LD E P R+ + +G+K Sbjct: 35 MMKGWYLLYCKRSEQERAVI----------NLDRQGVECYYPQVRIDKIVRGKKQEVLEP 84 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP YV + Y +I+ T V F+ G P V I +M + + Sbjct: 85 LFPSYVFVYFDPEQVSYTSIRSTRGVADFIRRGSTPQLVQQELIYQLMMNEDCDEHKEAL 144 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ + +S G F + I + D EK R + + + GR V + + K Sbjct: 145 CELPKPGDSLTLSQGQFKGIDAIYQEADGEK-RSFMLINLLGRAVTVSVDNKDLIK 199 >gi|229003111|ref|ZP_04160959.1| Transcription antitermination protein nusG [Bacillus mycoides Rock1-4] gi|228758139|gb|EEM07336.1| Transcription antitermination protein nusG [Bacillus mycoides Rock1-4] Length = 107 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 1/107 (0%) Query: 71 MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERV 129 MTD ++ +++TP V GF+G+ + S + E ++ ++ + V FE+ E V Sbjct: 1 MTDDSWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETV 60 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V++GPFA++ G ++ +D EK +V V V +FGR TPVEL ++Q+EK+ Sbjct: 61 RVNEGPFANYTGAIEEIDMEKQKVRVLVDMFGRETPVELDFHQIEKL 107 >gi|307302360|ref|ZP_07582118.1| NusG antitermination factor [Shewanella baltica BA175] gi|306914398|gb|EFN44819.1| NusG antitermination factor [Shewanella baltica BA175] Length = 168 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++GRK FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q ++ + Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEAL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ +DGPF GI + K R H+ I G+V V + ++++ Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166 >gi|116750229|ref|YP_846916.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|116699293|gb|ABK18481.1| transcription antitermination protein nusG [Syntrophobacter fumaroxidans MPOB] Length = 207 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 10/173 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + W+ + V EK + + + +P S R+ R+ F Sbjct: 33 SKAWFALYVQVKHEKDIIRRLEQ---------KDVDCFLPLMECWSKRRDRRKRITVPLF 83 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV + V+ + I TP + + E P P+ + + A Q Sbjct: 84 PGYVFVYTVLDNYTNVDILKTPGAVNIVRNSEGPLPIPSY-QIRNLRTILGASQSIELHP 142 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + GE V V GP GI+K ++ R+ V V R VEL VE Sbjct: 143 YLKEGECVRVVRGPLNGCVGILKRHSPKQGRLVVRVDCIQRSVSVELDVEDVE 195 >gi|83309147|ref|YP_419411.1| transcription antitermination protein nusG [Magnetospirillum magneticum AMB-1] gi|82943988|dbj|BAE48852.1| Transcription antitermination protein nusG [Magnetospirillum magneticum AMB-1] Length = 167 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 12/175 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W++V ++N EK ++ L ++ +P + + Sbjct: 1 ME-SWFVVHTHANAEK---------IAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ + +I+ T V + G P P+ I+ I + + + + Sbjct: 51 FPRYLFLRMDPDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGE 110 Query: 121 -VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F G+R+ + +GP A G+ + +D + +RV + + + GR V + V Sbjct: 111 AMPFASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGRQVRVRVPLEAVR 164 >gi|304409927|ref|ZP_07391546.1| NusG antitermination factor [Shewanella baltica OS183] gi|304351336|gb|EFM15735.1| NusG antitermination factor [Shewanella baltica OS183] Length = 168 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++GRK FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGRKQVCRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q ++ + Sbjct: 53 NYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPAQTVLAEAL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ +DGPF GI + K R H+ I G+V V + ++++ Sbjct: 113 ELKTGEKIRFTDGPFVDLEGIFQEKCPNK-RCHILFNIMGQVKTVAVPEKSIKRV 166 >gi|304373041|ref|YP_003856250.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1] gi|304309232|gb|ADM21712.1| Transcription antitermination protein [Mycoplasma hyorhinis HUB-1] gi|330723344|gb|AEC45714.1| transcription antitermination protein NusG [Mycoplasma hyorhinis MCLD] Length = 198 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 15/188 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT-------IPSERVVSVRKGRKVNS 56 +WY++ SN E A+E + R+ GL+ EI E ++ + V Sbjct: 5 KWYMISTISNKEDTAIELLKNRIKSEGLEQYFKEIKKFEITTISDKEYEKKLKGEKYVEK 64 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-------SEIEHIMNQ 109 + + GY+ I M D V+ +++T + G +G+ + T E + Sbjct: 65 KENLYKGYIFINMQMNDAVWFIVRNTQYITGLIGSSGKGTKPTPVSEKQIRKMEEKQREK 124 Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + + + + F+VG V + GPF G + +VD + V++ + GR T + Sbjct: 125 LVEYAKFGIINSPFKVGTVVEIIQGPFIGEIGKISSVDLVNASSAVQLEVLGRKTETLIE 184 Query: 170 YNQVEKIV 177 + KI+ Sbjct: 185 NKNL-KII 191 >gi|24374707|ref|NP_718750.1| transcriptional activator rfaH, putative [Shewanella oneidensis MR-1] gi|24349362|gb|AAN56194.1|AE015757_4 transcriptional activator rfaH, putative [Shewanella oneidensis MR-1] Length = 166 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++G+K FP Sbjct: 2 KAWYLLYCKPRSEVRAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 Y+ I + + T V + E +P+ D I I + Q + + + Sbjct: 53 NYLFINFDPSQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPL 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE++ DGPFA I + K R HV I G++ + + VE++ Sbjct: 113 ELKTGEKIRFKDGPFADLEAIFQEKCPNK-RCHVLFNIMGQINILTVPEQSVERV 166 >gi|163783795|ref|ZP_02178779.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] gi|159880948|gb|EDP74468.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] Length = 101 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFAS 138 I+ TP + + G P+ + E+ I+ QV+ V+ V FE G++V V +GPF + Sbjct: 6 IEKTPHIYKPVLVGGKVVPLKEEEVNRILEQVQKGVK--TRKVEFEKGDQVRVIEGPFMN 63 Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G V+ V E+ ++ V + IFGR+TPVEL + QVEKI Sbjct: 64 FTGTVEEVHPEREKLTVLISIFGRLTPVELDFTQVEKI 101 >gi|328953460|ref|YP_004370794.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328453784|gb|AEB09613.1| NusG antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 190 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 10/173 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T WY+V + E + RL RSG + +P V S R R++ F Sbjct: 26 TASWYVVYTACHHEFRV----EQRLKRSGRE-----TFLPWIAVPSRRCDRRLQINVPLF 76 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ +T VYH I P V L E+ + Q A+++ Sbjct: 77 PGYLFIREQLTPVVYHEIVRLPGVARILRCNG-GYATVCPEVIESIRQSLASLRPCGPHA 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F + G++V V +GP GI+K + K R+ + V +F R VEL + VE Sbjct: 136 FVQRGKQVRVVEGPLRGIVGIIKELKHRKRRLVITVELFKRSMAVELDDDAVE 188 >gi|116749134|ref|YP_845821.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|116698198|gb|ABK17386.1| NusG antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 212 Score = 90.9 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 10/173 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T W+ + V EK+ V + D + +P S R R+ F Sbjct: 38 TKSWFALYVQVKHEKEVVRRL---------DQKSIDCFLPLMECWSKRLDRRKRITLPLF 88 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV + V+ + I TP + L E P P+ + + + + Sbjct: 89 PGYVFVHTVLDNYTNVNILKTPGALSILKNSEGPLPI-PVYQIENLQTILNSSKSLDLHP 147 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + GE V V GP + GI+K +K R+ V V + VEL VE Sbjct: 148 YLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVE 200 >gi|301058101|ref|ZP_07199153.1| transcription termination/antitermination factor NusG [delta proteobacterium NaphS2] gi|300447733|gb|EFK11446.1| transcription termination/antitermination factor NusG [delta proteobacterium NaphS2] Length = 179 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW+ + S E+K GL E +P +V+S RK R+ PG Sbjct: 15 RWWALHTRSRFEQKVYT---------GLCGKSLEALLPRIQVMSRRKDRRKKILVPLLPG 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV +++ + + YH I T V+ + P P + EI +M ++ + + + Sbjct: 66 YVFVRSTLAPEEYHRIIQTVGVVRMVSFRGTPIPADEKEIASLMI-MDGTDRTVQNRSYM 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+RV + +GP G ++ RV + + + R VE+ +E+I Sbjct: 125 REGDRVMIMEGPLKGLEGFYIRHKDKTERVVISIELLQRSLEVEIEDWSLERI 177 >gi|146340576|ref|YP_001205624.1| putative transcription antitermination protein NusG [Bradyrhizobium sp. ORS278] gi|146193382|emb|CAL77398.1| putative transcription antitermination protein NusG [Bradyrhizobium sp. ORS278] Length = 201 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYI++ + +CE K +++ R + + +T+ E R + P Sbjct: 31 WYILRTHPHCEAKVMKAFRLR----NISAYLPVMTVSKEFRRMRRGFEWIERRDVVSPLI 86 Query: 65 VLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVF 122 + + ++ + + +G L GE +T + I + A + + Sbjct: 87 LGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDIRKIEDIANTPKSKRARA 146 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FEVG+ V V GPF F+ V+ +D + R+ V IFGR+TP+++ ++E + Sbjct: 147 FEVGQLVRVLSGPFRYFSARVERID-SRGRLSVGAEIFGRITPIDIDEGEIEAV 199 >gi|127512329|ref|YP_001093526.1| NusG antitermination factor [Shewanella loihica PV-4] gi|126637624|gb|ABO23267.1| transcription antitermination protein nusG [Shewanella loihica PV-4] Length = 175 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 20/182 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V E +A +++ E +P+ + G+ FP Sbjct: 2 KSWYLVYCKPRGETRAQQNLAL---------QQIETYLPTLPQQITKSGKNSVKRLPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV---- 118 Y+ I + I T V +G E + + D+ + I + + Sbjct: 53 CYLFIYFDPLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSD 112 Query: 119 ------SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + VG++V +GPF GI + +K R H+ I G+ V ++ Sbjct: 113 DLLSGNAEPRLSVGDKVKFVEGPFKELEGIFEEQSGDK-RCHILFEIMGQQKRVSVSRVS 171 Query: 173 VE 174 ++ Sbjct: 172 IK 173 >gi|212634401|ref|YP_002310926.1| transcriptional activator RfaH [Shewanella piezotolerans WP3] gi|212555885|gb|ACJ28339.1| Transcriptional activator RfaH [Shewanella piezotolerans WP3] Length = 174 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 18/180 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ E IP+ G+ FP Sbjct: 2 KAWYLLYCKPRGEARAQQNLAL---------QEIETYIPTYPEEKTHNGKVTVRRVSLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD--------SEIEHIMNQVEAAV 114 Y+ I I +T VI +G E +P+ + E + I + Sbjct: 53 SYLFIHFDPQVTSVSRIHNTRGVIRIVGCKELMTPIDEGVIGAIKAREHKWINELLPETR 112 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + G++V DGPFA GI + + EK R +V I G+ V + + V+ Sbjct: 113 CKEELVCPVKSGDKVKFVDGPFAELEGIFQEKNGEK-RCYVLFDIMGKQQRVSVDRSTVK 171 >gi|281418039|ref|ZP_06249059.1| NusG antitermination factor [Clostridium thermocellum JW20] gi|281409441|gb|EFB39699.1| NusG antitermination factor [Clostridium thermocellum JW20] Length = 178 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 11/179 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V S E+ + L ++ IP + V+ R G R FP Sbjct: 1 MYWYVLFVKSGRERNVERYLKKE-----LKADISTPFIPLQEVLFKRSGSVKKEIRLLFP 55 Query: 63 GYVLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 GYV I+++++ +++ + I + +I L + + +SE + +++ Sbjct: 56 GYVFIESILSGNEFLEEINYLIDRSSDIISLLKYSDTEIAMRESERQRLLSLCNNEHCIE 115 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S G+R+ + +GP IVK V+ K +E+ I G V +A V+K+ Sbjct: 116 A-SYGIIEGDRIRIFEGPLKGMESIVKKVNRHKREALIEIEIMGDARLVTVALEIVKKV 173 >gi|239947116|ref|ZP_04698869.1| transcription antitermination protein NusG [Rickettsia endosymbiont of Ixodes scapularis] gi|239921392|gb|EER21416.1| transcription antitermination protein NusG [Rickettsia endosymbiont of Ixodes scapularis] Length = 83 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/81 (49%), Positives = 59/81 (72%) Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 P +T+SEI++I N +EA + +S +EVGE V V+DGPF +F G V+ +D+EK+R+ Sbjct: 1 PRALTESEIQNIFNNLEAEAKEAKNSKLYEVGEIVAVTDGPFETFMGTVEEIDQEKNRLK 60 Query: 155 VEVVIFGRVTPVELAYNQVEK 175 V V IFG+ TP+EL +NQV+K Sbjct: 61 VSVSIFGKATPIELNFNQVKK 81 >gi|121730820|ref|ZP_01682892.1| transcription termination factor rho [Vibrio cholerae V52] gi|121627605|gb|EAX60295.1| transcription termination factor rho [Vibrio cholerae V52] Length = 123 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 78/117 (66%), Gaps = 1/117 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N++E A + P Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPR 123 >gi|75675741|ref|YP_318162.1| transcription antitermination protein nusG [Nitrobacter winogradskyi Nb-255] gi|74420611|gb|ABA04810.1| Transcription antitermination protein nusG [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 18/186 (9%) Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M P+ W+I++ + CE+K R + I V V +R Sbjct: 30 MQPKYWFILRTHPGCERKV----MREFERRNISAYCPLIAKQQRVVRRVHGSSWTYEIKR 85 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115 + + V D V G+L G + + SE E ++V Sbjct: 86 LVQVPLFPQLVFVPDFERVPADIGGVSGWLRFGGWRARI-PSEREATSDRVACMADIHAL 144 Query: 116 -------RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 + + FE+G V + DGPF F+G ++ +D K R+ V + IFGR++P E+ Sbjct: 145 VAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD-SKGRLKVAIEIFGRLSPTEM 203 Query: 169 AYNQVE 174 + Q+E Sbjct: 204 SEAQIE 209 >gi|167463025|ref|ZP_02328114.1| putative transcription antiterminator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383390|ref|ZP_08057173.1| transcription antitermination-like protein NusG [Paenibacillus larvae subsp. larvae B-3650] gi|321152294|gb|EFX45117.1| transcription antitermination-like protein NusG [Paenibacillus larvae subsp. larvae B-3650] Length = 176 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 12/176 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ V + E + I + L + + +P R R FPGY Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSLQCFIPKKVVPECHKGVRRD-----VIRVLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-------PSPVTDSEIEHIMNQVEAAVQRP 117 + I+ M+ +Y+ +K+ P + + +G+ E + + Sbjct: 58 IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 S + ++V V GP ++K VD+ K R +EV + + V++ N + Sbjct: 118 EYSEVSIINKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173 >gi|169830052|ref|YP_001700210.1| transcription antitermination protein [Lysinibacillus sphaericus C3-41] gi|168994540|gb|ACA42080.1| Transcription antitermination protein [Lysinibacillus sphaericus C3-41] Length = 114 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 5/112 (4%) Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEA 112 R+ FPGYVL++ +MTD ++ +++TP V GF+G G P+P+ E + ++ Q+ Sbjct: 1 MMRKVFPGYVLVELIMTDDSWYVVRNTPGVTGFIGSSGGGAKPTPLLPEEADRLLQQMGM 60 Query: 113 AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + V +GE V V +GPFA F G V+ +D EK ++ V V +FGR T Sbjct: 61 TDKIV--EVDISIGEAVEVLEGPFAHFQGRVEEIDTEKGKIKVSVDMFGRET 110 >gi|220926733|ref|YP_002502035.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219951340|gb|ACL61732.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 254 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 8/172 (4%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW++V ++A + + + + V GR+ +R+ Sbjct: 90 RWHVVVAKPRYARRAAKDLNR--------AGIPAVLTDERVEVVAENGRRRIVQRQLLRR 141 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 + + V +T V + G V Q + F Sbjct: 142 VLFVGLKAGAPVDAVHGETYFVRDAVRDGLGRPIVVPPNELSQFVQALSDTLTERDPSAF 201 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E G+ V + DGPFASFNG+V++ D R+ V V IFGR++ V L ++QVE+ Sbjct: 202 EPGDEVWIKDGPFASFNGVVEDADFVTRRLKVGVQIFGRISSVGLDFSQVER 253 >gi|319427039|gb|ADV55113.1| transcriptional acivator RfaH [Shewanella putrefaciens 200] Length = 168 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++G+K FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121 Y+ IK + + T V + E +P+ D I I + + Q Sbjct: 53 NYLFIKFDPSQTSVRQVHSTRGVNRIINCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++GE++ DGPF G+ + K R HV + G+V + + +E++ Sbjct: 113 ELKMGEKIRFKDGPFVDLEGVFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166 >gi|222446920|pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli Nusg Length = 123 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPV 118 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+++ +P Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 >gi|146293640|ref|YP_001184064.1| NusG antitermination factor [Shewanella putrefaciens CN-32] gi|145565330|gb|ABP76265.1| transcription antitermination protein nusG [Shewanella putrefaciens CN-32] Length = 168 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 11/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ + L+ +P ++G+K FP Sbjct: 2 KAWYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSV 121 Y+ IK + + T V + E +P+ D I I + + Q Sbjct: 53 NYLFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEES 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++GER+ DGPF GI + K R HV + G+V + + +E++ Sbjct: 113 ELKMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166 >gi|28870605|ref|NP_793224.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato str. DC3000] gi|28853853|gb|AAO56919.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato str. DC3000] gi|331019789|gb|EGH99845.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 170 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P R + + K E FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QDFECFRP-LRAAAKKIAAKAQVEEALFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I ++ I+ T V + G +P PV D IE I ++ P ++ F Sbjct: 59 YLFIHMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLC----TPAPALRF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V ++ G + I D R + + + R V L + + +I Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166 >gi|307265355|ref|ZP_07546912.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919639|gb|EFN49856.1| NusG antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 180 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S E K + I + + ++ IP +++ KG+ V + FP Sbjct: 2 KKWYVIFTRSGYENKVKDIIENCFKQEEV-----KLLIPKRKIIERVKGQPVEKIKLLFP 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I+ + + +S Sbjct: 57 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILALTKNSDLIDLSKGI 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V + I G + V+LA +E Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 167 >gi|330974585|gb|EGH74651.1| transcriptional activator RfaH [Pseudomonas syringae pv. aceris str. M302273PT] Length = 170 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 20/181 (11%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M+ RWY++Q E +A E + E P + + + G +V Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGTRVQ 50 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + FPGY+ I ++ I+ T V + G +P PV D IE I ++ Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P F G+ V ++ + I + D R + + + R V L + + + Sbjct: 107 TPAPKTQFAQGDTVLITHASWGDIEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSR 165 Query: 176 I 176 I Sbjct: 166 I 166 >gi|170726005|ref|YP_001760031.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908] gi|169811352|gb|ACA85936.1| transcriptional acivator RfaH [Shewanella woodyi ATCC 51908] Length = 179 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 23/189 (12%) Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 MT + WY++ E +AV L + +P+ KG Sbjct: 1 MTMKAWYLLYCKPRGEARAV---------HNLTLQNIDTYLPTIGEEKRVKGEVSIKRIP 51 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA------- 112 FPGY+ I I T V +G E + + DS I I + Sbjct: 52 LFPGYLFINIDPQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLP 111 Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 S+V G++V ++GPFA GI +K R HV I G+ V Sbjct: 112 ASELSQKCDGSSTVEINPGDQVKFTEGPFADLEGIFAEKSGDK-RCHVLFEIMGQKKRVS 170 Query: 168 LAYNQVEKI 176 + + ++ + Sbjct: 171 VPRDSIKPV 179 >gi|213971370|ref|ZP_03399485.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1] gi|301381257|ref|ZP_07229675.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato Max13] gi|302059482|ref|ZP_07251023.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato K40] gi|302129862|ref|ZP_07255852.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923908|gb|EEB57488.1| transcriptional activator RfaH [Pseudomonas syringae pv. tomato T1] Length = 170 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P R + + K E FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QDFECFRP-LRAAAKKIAAKAQVEEALFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I+ ++ I+ T V + G +P PV D IE I ++ P ++ F Sbjct: 59 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLC----TPAPALRF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V ++ G + I D R + + + R V L + + +I Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166 >gi|92114264|ref|YP_574192.1| transcription antitermination protein nusG [Chromohalobacter salexigens DSM 3043] gi|91797354|gb|ABE59493.1| transcription antitermination protein nusG [Chromohalobacter salexigens DSM 3043] Length = 182 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 11/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PRWY+VQ + L + + P V R+ + V FP Sbjct: 17 PRWYVVQCKGG---------ESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSV 121 Y+ I + I+ T V+ +G G+ P PV D+ IE + + R + Sbjct: 68 HYLFIHLDRVASNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNA 127 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +F GE V +++GPF + + + R V + + +EL + + Sbjct: 128 YFRPGEIVEITEGPFQALQAVFDTQQGD-ERAIVLLNMLHHQQRLELPVGHLRR 180 >gi|120598282|ref|YP_962856.1| NusG antitermination factor [Shewanella sp. W3-18-1] gi|120558375|gb|ABM24302.1| transcription antitermination protein nusG [Shewanella sp. W3-18-1] Length = 168 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 11/173 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E +A +++ + L+ +P ++G+K FP Y Sbjct: 4 WYLLYCKPRSEARAQQNL----ALQNLE-----TYLPMVSEEKSQRGQKRICRVPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSSVFF 123 + IK + + T V + E +P+ D I I + + Q Sbjct: 55 LFIKFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHTIRMKEFTSSQTVLAEESEL 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++GER+ DGPF GI + K R HV + G+V + + +E++ Sbjct: 115 KMGERIRFKDGPFVDLEGIFQEKCPNK-RCHVLFSLMGQVNTITVPEESLERV 166 >gi|228931282|ref|ZP_04094212.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229188095|ref|ZP_04315179.1| Transcription antitermination protein nusG [Bacillus cereus BGSC 6E1] gi|228595336|gb|EEK53072.1| Transcription antitermination protein nusG [Bacillus cereus BGSC 6E1] gi|228828377|gb|EEM74082.1| Transcription antitermination protein nusG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 179 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 13/179 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY + V S E I L+ + + +P + V RKG R+ PGY Sbjct: 6 WYALCVRSGYEDLVESLIL-----RDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHIMNQVEAAVQRPVS 119 +LI M K+Y+ +K+ P FL ++ + D EI I+ + S Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQVEKI 176 +FE G +V V GP GI++ +D+ K R + + G ++ V + + +K+ Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVEFLSSQKL 178 >gi|30248484|ref|NP_840554.1| putative transcriptional activator [Nitrosomonas europaea ATCC 19718] gi|30138370|emb|CAD84379.1| putative transcriptional activator [Nitrosomonas europaea ATCC 19718] Length = 165 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 14/175 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V EK A +++ +P V + G + FP Sbjct: 1 MHWYLVHTKPKQEKCAFQNL---------QQQGYRCYLPMLPVEKLHLGNLTVVDEPLFP 51 Query: 63 GYVLIKAVMTD--KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 Y+ I+ D K + I+ T V + G P+ + D I+ + Q + +P Sbjct: 52 RYLFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKPER- 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ GERV +++G FA GI + + E+ RV V + + + + ++ + K Sbjct: 111 -LFKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSLRK 163 >gi|328478515|gb|EGF48215.1| transcription termination/antitermination factor NusG [Lactobacillus rhamnosus MTCC 5462] Length = 114 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++ YS E K ++ R S +D + + +P E + G++ ++ F Sbjct: 9 EKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKEKIEMKKTF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 PGYVL++ VMTD+ + +++TP V GF+G+ Sbjct: 69 PGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHG 100 >gi|157961221|ref|YP_001501255.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345] gi|157846221|gb|ABV86720.1| transcriptional acivator RfaH [Shewanella pealeana ATCC 700345] Length = 173 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ S E +A +++ + +P+ + KG+ FP Sbjct: 2 KAWYLLYCKSRGESRAQQNLAL---------QQIDTYLPTYPEEKLVKGQSTVRRVLLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTD-------SEIEHIMNQVEAAVQ 115 Y+ + I +T VI +G E +P+ D +M+++ Sbjct: 53 SYLFVHFDPEITSVAKIHNTRGVIRIVGCKELMTPIDDSIIHAIKMREHRLMSELSPIEA 112 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P E G++VC ++GPFA GI + EK R V + G+ V + + ++ Sbjct: 113 APTIEPEMERGDKVCFTEGPFAELEGIFDEANGEK-RCFVLFDLMGKQQRVAIKKDSIKP 171 Query: 176 I 176 + Sbjct: 172 V 172 >gi|125973877|ref|YP_001037787.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405] gi|256004332|ref|ZP_05429314.1| NusG antitermination factor [Clostridium thermocellum DSM 2360] gi|125714102|gb|ABN52594.1| NusG antitermination factor [Clostridium thermocellum ATCC 27405] gi|255991766|gb|EEU01866.1| NusG antitermination factor [Clostridium thermocellum DSM 2360] gi|316939925|gb|ADU73959.1| NusG antitermination factor [Clostridium thermocellum DSM 1313] Length = 185 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V S E+K + + L+ ++ IP + ++ + G R FP Sbjct: 1 MYWYVLFVKSGKERKVEQYLRKE-----LNADISIPFIPLQEILFKKAGSVKKEIRPLFP 55 Query: 63 GYVLIKAVMT-----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 GYV +++++ +++ + I + +I L + + +SE + +++ Sbjct: 56 GYVFVESMLPGRDFLEEIKYLINRSSDIISLLKYSDTEIAMRESERQRLLSLCNNNYCIE 115 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S G+++ + DGP +VK ++ + +E+ I G V V +A V K+ Sbjct: 116 A-SYGIIEGDKILIFDGPLKGMESLVKKINRHRREALIEIEIMGDVRLVTVALEVVRKV 173 >gi|220924151|ref|YP_002499453.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219948758|gb|ACL59150.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 230 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 22/184 (11%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV----RKGRKVNSE 57 + RW++V R + L + + +P+ R+ V R GR Sbjct: 56 SMRWHLVDA-------------RRKQTARLMAALAQGAVPAVRLQEVVVAERSGRARKVR 102 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-- 115 + + + + +V G E P V +++ + + Sbjct: 103 VPLLGRLLFVGLEPGEDASWLQEVYFEVEGVRHVAEKPVLVRGKQLDAFAGNLGGRGEPI 162 Query: 116 ---RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++ FEVGE V V+DGPFASFNG+V+ +D + + V V IFGR TPV L +Q Sbjct: 163 RRADALTVEDFEVGEPVRVTDGPFASFNGLVEEIDNLEHTLKVAVSIFGRSTPVTLEPSQ 222 Query: 173 VEKI 176 VE++ Sbjct: 223 VERL 226 >gi|326391515|ref|ZP_08213048.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325992444|gb|EGD50903.1| NusG antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 180 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S E K + I + + ++ IP +++ KG+ V R FP Sbjct: 2 KKWYVIFTRSGYENKVRDIIESCFKQEEV-----KLLIPKRKIIEREKGQPVERIRLLFP 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D +Y+ + D K FL G+ P+ V + E++ I++ + + +S Sbjct: 57 GYVFVNAEMSDDLYYKMSDVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V + I G + V+LA +E Sbjct: 117 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 167 >gi|207108836|ref|ZP_03242998.1| transcription antitermination protein NusG [Helicobacter pylori HPKX_438_CA4C1] Length = 110 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Query: 75 VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134 ++H I+ P+V F+G + P+P+++++I HI+ ++ P +FFE GE V V +G Sbjct: 1 MWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRA-APKPKIFFEQGEVVRVVEG 59 Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 PFA+F V+ D E ++ + V IFGR TP+E+ ++QVEK+ Sbjct: 60 PFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKL 101 >gi|149925742|ref|ZP_01914006.1| NusG antitermination factor [Limnobacter sp. MED105] gi|149825859|gb|EDM85067.1| NusG antitermination factor [Limnobacter sp. MED105] Length = 179 Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 13/177 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR-KVNSERR 59 M +WY++ E ++ L + P RV + G+ V Sbjct: 13 MA-QWYVMYTKPRQE---------TVALENLQRQNYNVFFPQARVQKRKTGQGTVQVVEP 62 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP Y+ I+ + + ++ T + + G PS V IE I +Q+++ + Sbjct: 63 LFPRYMFIQLEVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLL 122 Query: 120 SV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + EVG V V++GPF G + + RV V + + G VELA +Q++K Sbjct: 123 KLNELEVGGEVRVAEGPFEGMMGKIAARKSD-QRVIVLLNVLGAERSVELAQSQLDK 178 >gi|295106671|emb|CBL04214.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b] Length = 174 Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV E++ + + D ++ E IP ++ KG PGY Sbjct: 2 WYVVQVVGGRERRV----LHLVEQLVDDDVLQECFIPQYEIMKKTKGEWKRRSEILLPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + D+ ++ P LG P+ EI I + + S Sbjct: 58 LFLITDKVDQAADELRKVPAFTKLLGNDNAFIPLNADEIAFIDSFTTKDHRVVEMSEGVI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ + ++ GP +VK +D K +VE +FGR +++ V K Sbjct: 118 EGDEISITKGPLVHQTALVKKIDRHKRLAYVETTMFGRKLNLKVGLEIVRK 168 >gi|71734584|ref|YP_275310.1| transcriptional activator RfaH [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555137|gb|AAZ34348.1| transcriptional activator RfaH [Pseudomonas syringae pv. phaseolicola 1448A] Length = 170 Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q E +A E + + P +V + +V ++ F Sbjct: 7 EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V ++ G ++ I + D R + + + R + L + + ++ Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMGLPISSLSRV 166 >gi|237807394|ref|YP_002891834.1| transcriptional activator RfaH [Tolumonas auensis DSM 9187] gi|237499655|gb|ACQ92248.1| transcriptional acivator RfaH [Tolumonas auensis DSM 9187] Length = 167 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+ E++A L + + P + +G+ + FP Sbjct: 2 KHWYLAYCRPKEEERAK---------LHLRNQGVDSYYPLVLTRKIIRGKAMEKIEPMFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + + ++ T + +G G V + +M ++ R V S Sbjct: 53 RYLFVHMDIEEFSPLKVRSTRGIHHIVGHGSTWDKVPAELVYQLMRNEDSDESRDVVSRL 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + G+ V ++GPF I + D R + + I + Sbjct: 113 PKTGQMVIFNEGPFEGLQAIYQEPDG-NQRAFLLLSILNQDI 153 >gi|330976250|gb|EGH76312.1| transcriptional activator RfaH [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 170 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 20/181 (11%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M+ RWY++Q E +A E + E P + + Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQ 50 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + FPGY+ I ++ I+ T V + G +P PV D IE I ++ Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P F G+ V ++ + I + D R + + + R V L + + + Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSR 165 Query: 176 I 176 I Sbjct: 166 I 166 >gi|257063934|ref|YP_003143606.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476] gi|256791587|gb|ACV22257.1| transcription antiterminator [Slackia heliotrinireducens DSM 20476] Length = 169 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV +N E + + I + + ++ E +P V+ +G+ + PGY Sbjct: 2 WYVIQVGTNQEDRVIGLIRSFVGK----DVLKEAFVPQVEVMRRSRGQWQKRKELLLPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + A +K+ + D P LG + +P+ D EI+ + + S Sbjct: 58 VFVIATDPEKLNQALIDVPAFTRLLGNDVSFTPLLDDEIKFLEAFTAPDRRIVRMSKGVI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+++ +++GP G++K +D K ++E+ + GR +++ V K Sbjct: 118 EGDQIIINEGPLRGQTGLIKRIDRHKRLAYLEMTVMGRKKMIKVGLEIVSK 168 >gi|289678572|ref|ZP_06499462.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae FF5] Length = 170 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P + + + FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQAGEPLFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I ++ I+ T V + G +P PV D IE I ++ P F Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKTQF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++ + I + D R + + + R V L + + +I Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSRI 166 >gi|167957245|ref|ZP_02544319.1| hypothetical protein cdiviTM7_01145 [candidate division TM7 single-cell isolate TM7c] Length = 113 Score = 87.8 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 65/105 (61%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY V YS E K +SI R++ + + + +P E+ + ++ G++ +R+ F Sbjct: 9 TRQWYAVHTYSGYEDKVADSIRQRINAVDMADKIFAVMVPKEKQIEIKNGKRKIVDRKIF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 GY L++ +T++ ++ +++TP V GF+G+G P+PV+D+EI+ Sbjct: 69 QGYCLVEMKLTEETWYIVRNTPGVTGFVGSGTEPTPVSDAEIKKN 113 >gi|298487576|ref|ZP_07005617.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157668|gb|EFH98747.1| Transcriptional activator RfaH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 170 Score = 87.8 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q E +A E + + P +V + +V ++ F Sbjct: 7 EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V ++ G ++ I + D R + + + R + L + + ++ Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSGDG-TERAVILLNMLQRQQKMVLPISSLSRV 166 >gi|47168441|pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg) C-Terminal (Ngc) Domain From Thermus Thermophilus Length = 58 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 36/56 (64%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V F G++V V GPFA F G V ++ E+ +V V V IFGR TPVEL ++QV K Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 >gi|330898232|gb|EGH29651.1| transcriptional activator RfaH [Pseudomonas syringae pv. japonica str. M301072PT] Length = 170 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 20/181 (11%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M+ RWY++Q E +A E + E P + + Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGAK-AQ 50 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + FPGY+ I ++ I+ T V + G +P PV D IE I ++ Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P F G+ V ++ + I + D R + + + R V L + + + Sbjct: 107 TPAPKAQFTQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLTMLQRQQKVVLPISSLSR 165 Query: 176 I 176 I Sbjct: 166 I 166 >gi|330888816|gb|EGH21477.1| transcriptional activator RfaH [Pseudomonas syringae pv. mori str. 301020] Length = 170 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q E +A E + P +V + +V ++ F Sbjct: 7 EARWYLIQTKPRQEARAEEHLRR---------QHFHCYRP-LQVDVKKTAARVQADEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V ++ G ++ I + D R + + + R + L + + ++ Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166 >gi|257484619|ref|ZP_05638660.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628356|ref|ZP_06461310.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650105|ref|ZP_06481448.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi str. 2250] gi|320323819|gb|EFW79903.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea str. B076] gi|320327958|gb|EFW83963.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea str. race 4] gi|330869759|gb|EGH04468.1| transcriptional activator RfaH [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330882283|gb|EGH16432.1| transcriptional activator RfaH [Pseudomonas syringae pv. glycinea str. race 4] gi|331011293|gb|EGH91349.1| transcriptional activator RfaH [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 170 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 15/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q E +A E + + P +V + +V ++ F Sbjct: 7 EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V ++ G ++ I + D R + + + R + L + + ++ Sbjct: 113 RFIQGDPVMITTGSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166 >gi|116623748|ref|YP_825904.1| NusG antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|116226910|gb|ABJ85619.1| NusG antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 179 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 13/169 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ V+V SN EKK+ + + + PS R ++ FPGY Sbjct: 20 WFAVKVRSNFEKKSADILRE---------KGYQEFAPSYPSRRYWSDRVKVIDQPLFPGY 70 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + + T V+ +G G +PV + E+ + + +++ Sbjct: 71 VFCRFHPNHFLPVLQ--TAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLH- 127 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 VG +V + GP A GI++ + + R+ V + + R E+ N V Sbjct: 128 VGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDANWV 175 >gi|28897599|ref|NP_797204.1| transcriptional activator RfaH [Vibrio parahaemolyticus RIMD 2210633] gi|153838389|ref|ZP_01991056.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810] gi|260363316|ref|ZP_05776183.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030] gi|260878245|ref|ZP_05890600.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034] gi|260895439|ref|ZP_05903935.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466] gi|260903333|ref|ZP_05911728.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037] gi|28805811|dbj|BAC59088.1| putative transcriptional activator RfaH [Vibrio parahaemolyticus RIMD 2210633] gi|149748248|gb|EDM59107.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ3810] gi|308088632|gb|EFO38327.1| transcriptional activator RfaH [Vibrio parahaemolyticus Peru-466] gi|308090167|gb|EFO39862.1| transcriptional activator RfaH [Vibrio parahaemolyticus AN-5034] gi|308107999|gb|EFO45539.1| transcriptional activator RfaH [Vibrio parahaemolyticus AQ4037] gi|308113596|gb|EFO51136.1| transcriptional activator RfaH [Vibrio parahaemolyticus K5030] gi|328473416|gb|EGF44264.1| transcriptional activator RfaH [Vibrio parahaemolyticus 10329] Length = 166 Score = 87.4 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQIRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + + +++ T V+ F+ G P V + + + ++ +S Sbjct: 53 CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELKQLEKCCTEKNISEC 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G++V V G FA + I + D EK R + V + + PV + + Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMISKRVPVSIDNTDL 163 >gi|548392|sp|P36262|NUSG_LIBAS RecName: Full=Transcription antitermination protein nusG gi|144455|gb|AAA23104.1| transcription antitermination protein [Candidatus Liberibacter asiaticus] gi|739022|prf||2002224A transcription antitermination protein Length = 70 Score = 87.4 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE Sbjct: 1 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60 Query: 168 LAYNQVEKIV 177 LAYNQVEKIV Sbjct: 61 LAYNQVEKIV 70 >gi|66046455|ref|YP_236296.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae B728a] gi|63257162|gb|AAY38258.1| Transcriptional activator RfaH [Pseudomonas syringae pv. syringae B728a] Length = 170 Score = 87.4 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 20/181 (11%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M+ RWY++Q E +A E + E P + + + G +V Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGTRVQ 50 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + FPGY+ I ++ I+ T V + G +P PV D IE I ++ Sbjct: 51 AGEPLFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA---- 106 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P F G+ V ++ + I + D R + + + R V L + + + Sbjct: 107 TPAPKTQFAQGDAVLITHASWGDVEAIFLSKDG-TQRAVILLNMLQRQQKVVLPISSLSR 165 Query: 176 I 176 I Sbjct: 166 I 166 >gi|171920742|ref|ZP_02931951.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867483|ref|ZP_03079487.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209554214|ref|YP_002285036.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903489|gb|EDT49778.1| NusG family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195660959|gb|EDX54212.1| NusG family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209541715|gb|ACI59944.1| NusG family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 257 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49 T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82 Query: 50 -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92 E F GY+ +KA MTD+++ I++T V G +G+ Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142 Query: 93 ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 D + N V FEV ++V Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVSLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F + +D+ K VE FGR+ ++L +N ++ Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247 >gi|210633806|ref|ZP_03297853.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279] gi|210159066|gb|EEA90037.1| hypothetical protein COLSTE_01770 [Collinsella stercoris DSM 13279] Length = 217 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V V + E ++ + R + +V E P R G ++ E+ PGY Sbjct: 37 WYVVNVPTGRE----SALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGY 92 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V++ +V +++ P+ L GE+ P+ D E I + S+ Sbjct: 93 VIVATEQIGRVKRLLREVPEYTRVLNMGESFVPLADGERAWIDAFTRKGERCVPMSMGVM 152 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP +K+V+ +S +VE+ I GR ++ V + Sbjct: 153 EGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSR 203 >gi|185178827|ref|ZP_02964615.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024461|ref|ZP_02997110.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518411|ref|ZP_03003907.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225550802|ref|ZP_03771751.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551181|ref|ZP_03772127.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209462|gb|EDU06505.1| NusG family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018757|gb|EDU56797.1| NusG family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998114|gb|EDU67211.1| NusG family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225378996|gb|EEH01361.1| NusG family protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379956|gb|EEH02318.1| NusG family protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 257 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49 T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82 Query: 50 -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92 E F GY+ +KA MTD+++ I++T V G +G+ Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142 Query: 93 ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 D + N V FEV ++V Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F + +D+ K VE FGR+ ++L +N ++ Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247 >gi|223985913|ref|ZP_03635949.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM 12042] gi|223962100|gb|EEF66576.1| hypothetical protein HOLDEFILI_03255 [Holdemania filiformis DSM 12042] Length = 171 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 14/179 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V E+K + IP +VV ++G E+ FP Sbjct: 1 MNWYVLFVRGGMEEKIRDFFL---------SQGLNAFIPKMKVVFRKQGISELVEKIMFP 51 Query: 63 GYVLIKAV-----MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 GY+ I++ M +++ ++ L + +P SE + + ++ + Sbjct: 52 GYLFIESELEQAAMDEQIKELRMQKTGIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVL 111 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S G +V +++GP F + +D K R +E+ + G+ V ++ V+KI Sbjct: 112 EHSTGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170 >gi|255018875|ref|ZP_05291001.1| transcription antitermination protein NusG [Listeria monocytogenes FSL F2-515] Length = 78 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 E + I+ + +R + FE+GE V V +GPFA F+G V +D +K + V V + Sbjct: 4 PEEADRILKSMGMVEKR--AEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNM 61 Query: 160 FGRVTPVELAYNQVEKI 176 FGR TPVE+ +NQ+EK+ Sbjct: 62 FGRETPVEVDFNQIEKL 78 >gi|330967921|gb|EGH68181.1| transcriptional activator RfaH [Pseudomonas syringae pv. actinidiae str. M302091] Length = 170 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P + E FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QNFECFRPLRAAAKKIAAKAQAEEA-LFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I+ ++ I+ T V + G +P PV D IE I ++ P + F Sbjct: 59 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPVLRF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V ++ G + I D R + + + R V L + + +I Sbjct: 115 TQGDQVMITTGSWCDVEAIFLTTDG-TERAVILLNMLQRQQKVVLPISSLSRI 166 >gi|309379175|emb|CBX22306.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 124 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY+VQ YS EK ++ R++R + I +P E+VV +R GR+ SER+ Sbjct: 1 MSKKWYVVQAYSWFEKNVQRTLEERIAREEMVDYFGHILLPVEKVVDIRNGRQTISERKS 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVS 119 +P YVL++ M+D ++ +K TP+V GF+G P P++ E E I+ QV+ ++P Sbjct: 61 YPVYVLVEMEMSDDSWYLVKSTPRVSGFIGGTANKPMPISQREAEIILQQVQTGAEKPKP 120 Query: 120 SVF 122 V Sbjct: 121 KVE 123 >gi|330943991|gb|EGH46181.1| transcriptional activator RfaH [Pseudomonas syringae pv. pisi str. 1704B] Length = 170 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P + R FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QQFECYRPLQADAKKTGTRVQT-GEPLFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I ++ I+ T V + G +P PV D IE I ++ P F Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKAQF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++ + I + D R + + + R V L + + +I Sbjct: 115 TQGDAVLITHASWGDVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSRI 166 >gi|188524233|ref|ZP_03004287.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273402|ref|ZP_03205938.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659836|gb|EDX53216.1| NusG family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249922|gb|EDY74702.1| NusG family protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 257 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 52/225 (23%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------ 49 T +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ Sbjct: 23 THQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82 Query: 50 -----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG 92 E F GY+ +KA MTD+++ I++T V G +G+ Sbjct: 83 NRANTKWETIVVDGVTKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142 Query: 93 ENPSPV-----------------------TDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 D + N V FEV ++V Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRTLVNLDEQTNSQQNVVVVESHETEDLPNFEVDQQV 202 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F + +D+ K VE FGR+ ++L +N ++ Sbjct: 203 KIVADTFFGEIARIAKIDQNKKVATVEFEFFGRINTLDLNFNDIQ 247 >gi|294140235|ref|YP_003556213.1| transcriptional activator rfaH [Shewanella violacea DSS12] gi|293326704|dbj|BAJ01435.1| transcriptional activator rfaH, putative [Shewanella violacea DSS12] Length = 180 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +AV L E +P+ KG+ + FP Sbjct: 2 KAWYLLYCKPRGEARAV---------HNLTLQEIETYLPTIGEEKRVKGQIIVKRIPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----------- 111 GY+ I I T V +G E + V DS I I + Sbjct: 53 GYLFIYFDPQITSVARIHSTRGVGRIVGCKELMTTVDDSIIHSIKMREHKLLSELLPELK 112 Query: 112 ----AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 A + P + V F GE++ ++GPFA GI + + +K R HV I G+ V Sbjct: 113 LEGADAQELPATEVEFSPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFDIMGQQKRVS 171 Query: 168 LAYNQVEKI 176 ++ ++ I Sbjct: 172 VSKRIIKPI 180 >gi|320161352|ref|YP_004174576.1| putative RfaH family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319995205|dbj|BAJ63976.1| putative RfaH family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 178 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 13/178 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +WY +Q N E +++ + G++ +I + + R + Sbjct: 1 MSKKWYAIQSKPNKE----QALCEQFQSRGIEVFYPQIRV-------NPVNPRARKIRPY 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+ + + + I+ P G + P+ V D+ IE I +V+ + Sbjct: 50 FPGYLFVHVDLDEVGLSVIRWIPFARGVVSFSNEPASVPDNLIEAIRRRVDEVNRAGGEL 109 Query: 121 VFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF-GRVTPVELAYNQVEKI 176 + + GE V + +GPFA + I K RV V + + R PVE+ ++ + Sbjct: 110 LETLKPGEPVLIQEGPFAGYEAIFDVRLSGKERVRVLIQLLSQRYIPVEMQVGSLKPL 167 >gi|56459699|ref|YP_154980.1| transcription antiterminator RfaH [Idiomarina loihiensis L2TR] gi|56178709|gb|AAV81431.1| Transcription antiterminator RfaH [Idiomarina loihiensis L2TR] Length = 165 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 15/170 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYIV+ E++A+ L++ + P V VR+G + + R FPGY Sbjct: 9 WYIVRTKPKQEERAI---------LNLENQGFGVFAPELTVKKVRRGVRTSVVERMFPGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V +K + ++ ++ T V G L G+N V I+ + V + + Sbjct: 60 VFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMRG-----VDQLTDEQAPQ 114 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 +G+ V + GPF F + +D E SR V + + +Y +++ Sbjct: 115 IGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163 >gi|13358146|ref|NP_078420.1| transcription antitermination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762353|ref|YP_001752666.1| transcription termination/antitermination factor NusG [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920320|ref|ZP_02931664.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508497|ref|ZP_02958026.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701857|ref|ZP_02971518.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11357058|pir||A82874 transcription antitermination factor UU581 [imported] - Ureaplasma urealyticum gi|6899590|gb|AAF30995.1|AE002156_10 transcription antitermination factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827930|gb|ACA33192.1| transcription termination/antitermination factor NusG [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902739|gb|EDT49028.1| NusG family protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675925|gb|EDT87830.1| NusG family protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701156|gb|EDU19438.1| NusG family protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 258 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 52/224 (23%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------------- 49 +WYIV V S E+K +E+I +L+ G ++++ I E++ V+ Sbjct: 24 HQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMKN 83 Query: 50 ----------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 E F GY+ +KA MTD+++ I++T V G +G+ Sbjct: 84 RANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSG 143 Query: 94 N------------PSPVTDSEIEHIMNQVEAAVQRPVSS-----------VFFEVGERVC 130 + D++ + + + V + FEV + V Sbjct: 144 KNVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEVK 203 Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F + +D+ K VE FGR+ ++L +N ++ Sbjct: 204 IIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247 >gi|269960688|ref|ZP_06175060.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834765|gb|EEZ88852.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 166 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTFEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + + +++ T V+ F+ G P + + + + ++ Sbjct: 53 CYVFARFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEIQGDLVYELKQLDKCVDEQASDEC 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G++V V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MPQPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|269137513|ref|YP_003294213.1| transcriptional activator RfaH [Edwardsiella tarda EIB202] gi|267983173|gb|ACY83002.1| transcriptional activator RfaH [Edwardsiella tarda EIB202] gi|304557587|gb|ADM40251.1| Transcriptional activator RfaH [Edwardsiella tarda FL6-60] Length = 163 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 14/177 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E L P + V +G++ + Sbjct: 1 ME-SWYLLYCKRGQLTRARE---------HLTRQEIPCVTPMITLEKVVRGKRTQVQEPM 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ T++ T V F+ G+ P+ V S ++ +M P + Sbjct: 51 FPNYMFIELDPERIHTTTVQSTRGVSHFVRFGKLPATVPFSIVKQLMMAPTPTAIAPQTP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + G+RV ++ G F+ I + D EK R + + + + L+ + EKI+ Sbjct: 111 I---PGDRVRITQGAFSGMEAIYRESDGEK-RAILLLNLLNQEVSHTLSNSAFEKIL 163 >gi|90417218|ref|ZP_01225145.1| transcriptional activator RfaH [marine gamma proteobacterium HTCC2207] gi|90330994|gb|EAS46255.1| transcriptional activator RfaH [marine gamma proteobacterium HTCC2207] Length = 169 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 12/173 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W+++Q S E +AVE++ + P +V + +G +V E Sbjct: 1 ME-SWFLLQTKSKQEGRAVENLER---------QGVKSFCPMIKVEKLSRGSRVVKEEAL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FPGY+ + + T++ T V F+ + P V +S I +M + A S Sbjct: 51 FPGYLFVNFDQSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRT-DAGNDETVS 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GER+ + DGPF N + D ++ R V + + + L + + Sbjct: 110 SLPSKGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161 >gi|328955784|ref|YP_004373117.1| NusG antitermination factor [Coriobacterium glomerans PW2] gi|328456108|gb|AEB07302.1| NusG antitermination factor [Coriobacterium glomerans PW2] Length = 181 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 4/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV+ E VE + + S LD E P G + PGY Sbjct: 2 WYVIQVFKGRESAMVEYVKRMVPASVLD----ECFSPRFETEIKVGGEWTRCVKTLLPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 ++ A DK+ + T + + + G P+ + E I + + S+ + Sbjct: 58 IIAIATGPDKLSRHLYGTLEFVRLVKQGGRFWPLQEEERNLIARFTKKGSRTVPMSIAVK 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP G++K++D KS +EV I GR + + + Sbjct: 118 DGDNVIVKSGPLMGHEGLIKSIDRRKSIATLEVEICGRKVRTRVGLGVLTR 168 >gi|47570852|ref|ZP_00241389.1| transcription termination/antitermination factor nusG [Bacillus cereus G9241] gi|47552480|gb|EAL10994.1| transcription termination/antitermination factor nusG [Bacillus cereus G9241] Length = 140 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74 E K ++ R+ G+ + + +P E V ++ G++ +R+ FPGYVL++ +MTD Sbjct: 1 ENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKVFPGYVLVELIMTDD 60 Query: 75 VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSSVFFEVGERVCVSD 133 ++ +++TP V GF+G+ + S + E ++ ++ + V FE+ E V V++ Sbjct: 61 SWYVVRNTPGVTGFVGSSGSGSKPSPLLEEEVVTIMKHMGMDNEVVDFDFELHETVRVNE 120 Query: 134 GPFASFNGIVKNVDEEKSRV 153 GPFA + G ++ +D EK +V Sbjct: 121 GPFADYTGAIEEIDVEKKKV 140 >gi|218778281|ref|YP_002429599.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01] gi|218759665|gb|ACL02131.1| NusG antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 178 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 12/173 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T +WY + S E + R E P R++S RK R+ + F Sbjct: 9 TKQWYALYTKSRHEACVNNYLAARS---------IESFYPQMRILSRRKDRRKMIDVPMF 59 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ ++A + + + +I P + +G + + I + ++ + + + Sbjct: 60 PGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSL--RIVSQKEALETGP 117 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ V + GPFA G+ ++ ++ V + G+ VE+ V+ Sbjct: 118 CYHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169 >gi|149189138|ref|ZP_01867426.1| transcriptional activator RfaH [Vibrio shilonii AK1] gi|148837101|gb|EDL54050.1| transcriptional activator RfaH [Vibrio shilonii AK1] Length = 163 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 13/172 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P V + +G++ N + FP Sbjct: 2 KRWYLLYCKRG---------EQARAKMHLENQGLECYYPEISVEKILRGKRQNVKEPLFP 52 Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV +K + T++ T V+ F+ G P + I + + V P + Sbjct: 53 SYVFVKFDYEVGPSFTTVRSTRGVVDFIRFGAQPKEINGDLIFELRSMVHC--DEPDCAD 110 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + GE V V G FA I + D E +R + V + + PV + + Sbjct: 111 LPDKGECVRVIGGQFAGIEAIFQEADGE-ARSIMLVNLINKQVPVSIDNKDL 161 >gi|325105016|ref|YP_004274670.1| NusG antitermination factor [Pedobacter saltans DSM 12145] gi|324973864|gb|ADY52848.1| NusG antitermination factor [Pedobacter saltans DSM 12145] Length = 169 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY + EKK E++ E+ +PS++++ RK + F Sbjct: 8 HRWYPIYTKPRFEKKVAENLLK---------QGIEVYLPSQKILKQWSDRKKWVDEPLFK 58 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV I Y + TP V+ F+ + V D E+ + + + F Sbjct: 59 SYVFIHINY--LQYDQVVRTPGVVRFIYFSGKIASVPDMEMNFLQTYLSGDFTVETTGQF 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G++V + G F + + + EK R+ + + G+ + + V Sbjct: 117 IKSGDKVKIVSGKFKGYEAEMVSYQNEK-RLILRIDALGQSILLNIPVADV 166 >gi|308271745|emb|CBX28353.1| hypothetical protein N47_G36770 [uncultured Desulfobacterium sp.] Length = 170 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P WY++ S E GL E +P V S R RK+ FP Sbjct: 7 PSWYVIHTKSRFENVV---------HEGLIKKNVESFLPKVLVRSRRVDRKIMIRVPLFP 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ +K+ + + I T V+ +G P V D E + + A + + V Sbjct: 58 GYMFVKSDLRPERQIEIFKTVGVVRMVGNRSGPISVPD-ETIASLKIMTAGEGKIFTGVK 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F G+ V V GPF G + RV V++ G+ VE+ + +E Sbjct: 117 FRKGDMVLVIRGPFEGVTGTFNRH-GKIGRVVVDIEALGQFASVEVDEDDIE 167 >gi|149376808|ref|ZP_01894565.1| Transcriptional activator RfaH [Marinobacter algicola DG893] gi|149358929|gb|EDM47396.1| Transcriptional activator RfaH [Marinobacter algicola DG893] Length = 163 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY +Q + +A+ L + P V ++ G++ FP Sbjct: 1 MTWYALQHKPSQGDRALT---------HLQNQDIACFYPKITVEKIKAGKRTKQLEPLFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ + TD ++ ++ T ++ + P+ + D I+HI + + ++ Sbjct: 52 GYLFVNLEQTDPMWAKLRSTRGILRIVSFANKPAAIPDDVIQHIKDSLHTVAEQ----GG 107 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + G+ V + +GPF I + D E R V + + V++ + Sbjct: 108 IKPGQAVELDEGPFKGIEAIFQAYDGE-ERAIVLISFMQKQQTVKVPLS 155 >gi|298704929|emb|CBJ28432.1| putative transcription antitermination protein [Ectocarpus siliculosus] Length = 823 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 13/181 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+++ ++ E + S+ L +GL V EI +P +V + E + G Sbjct: 221 HWYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQG 280 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--------NPSPVTDSEIEHIMNQVEAAVQ 115 Y+ K M+ +V + D +++GF+G D E + A + Sbjct: 281 YIYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKASEKALGANK 340 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P VG+ V +S+GPFA G V + + + V V FGR + V L ++ V K Sbjct: 341 IPQL---LGVGDLVEISEGPFALKKGEVSKIKDGEYVVKV--NTFGRNSDVRLDWDGVRK 395 Query: 176 I 176 + Sbjct: 396 L 396 >gi|238918124|ref|YP_002931638.1| transcriptional activator RfaH [Edwardsiella ictaluri 93-146] gi|238867692|gb|ACR67403.1| transcriptional activator RfaH, putative [Edwardsiella ictaluri 93-146] Length = 163 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 14/177 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E L IP + V +G++ + Sbjct: 1 ME-SWYLLYCKRGQLTRARE---------HLTRQEIPCVIPMITLEKVVRGKRTQVQEPM 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ T++ T V F+ G+ P+ V S ++ +M P + Sbjct: 51 FPNYMFIELDPERIHTTTVQSTRGVSHFIRFGKLPAIVPFSIVKPLMMTPALTAIAPQTP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 + G+RV ++ G F I + D EK R + + + + L+ + EKI+ Sbjct: 111 I---PGDRVRITQGAFNGIEAIYRESDGEK-RAILLLSLLNQEVSHTLSNSAFEKIL 163 >gi|309799005|ref|ZP_07693261.1| transcription antitermination protein NusG [Streptococcus infantis SK1302] gi|308117355|gb|EFO54775.1| transcription antitermination protein NusG [Streptococcus infantis SK1302] Length = 129 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 3/126 (2%) Query: 49 RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 + G+K E FPGYVL++ VMTD+ + +++TP V GF+G+ N S T + I + Sbjct: 3 KNGKKKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRD 62 Query: 109 QVEAAVQRPV-SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + + Q + EVG+ V + DG FA + G + +D ++V + + +FG T E Sbjct: 63 ILVSMGQTVQEFDIDVEVGQTVRIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAE 120 Query: 168 LAYNQV 173 + NQ+ Sbjct: 121 VNLNQI 126 >gi|294637995|ref|ZP_06716260.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685] gi|291088867|gb|EFE21428.1| transcriptional activator RfaH [Edwardsiella tarda ATCC 23685] Length = 163 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 14/177 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ + +R L P + V +G++ + Sbjct: 1 MEA-WYLLYCKRGQ-------LER--AREHLTRQAIPCVTPMIALEKVVRGKRTQVQEPM 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ T++ T V F+ G+ P+ V I+ +M A P + Sbjct: 51 FPNYMFIELDPERIHTTTVQSTRGVSHFIRFGKRPATVPFRVIKQLMTAPMATAAAPQT- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+RV + G F+ I + D EK R + + + + + EKI+ Sbjct: 110 --PMPGDRVRILQGAFSGLEAIYRESDGEK-RAILLLNLLNQEVSQSVDNGDFEKIL 163 >gi|154686640|ref|YP_001421801.1| putative transcription antiterminator [Bacillus amyloliquefaciens FZB42] gi|154352491|gb|ABS74570.1| putative transcription antiterminator [Bacillus amyloliquefaciens FZB42] Length = 176 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 12/180 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY + V S E+ + + R D IP ++V + G K + ++ FP Sbjct: 1 MKWYALFVESGKEETVQKFL-----RLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTG-------ENPSPVTDSEIEHIMNQVEAAVQ 115 GYVL K MT++ +H IK+ P + G + E + ++ Sbjct: 56 GYVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGD 115 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S + +V V+ GP GI+K +D+ K R + + G V + + K Sbjct: 116 TVDYSKVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175 >gi|196231071|ref|ZP_03129931.1| NusG antitermination factor [Chthoniobacter flavus Ellin428] gi|196224901|gb|EDY19411.1| NusG antitermination factor [Chthoniobacter flavus Ellin428] Length = 186 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 10/174 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY ++ E A + + P R+ + V F Sbjct: 17 EAKWYCLRAQPKHEHIAAARLRQCEEIQ--------VFCPRVRIQRSTRRGLVWFTEALF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ + + ++ V G + G++ V ++ + + + S Sbjct: 69 PNYLFARFEWVQS-HALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYM-EDAELKTVSF 126 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V + +GPF NG+VK + + RV V + + G T V+L V K Sbjct: 127 NIDEGDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180 >gi|317494886|ref|ZP_07953297.1| transcriptional activator RfaH [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917211|gb|EFV38559.1| transcriptional activator RfaH [Enterobacteriaceae bacterium 9_2_54FAA] Length = 162 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E L P + + +G++ + FP Y Sbjct: 4 WYLLYCKRGQLERAKE---------HLSRQEIPCFTPMITLEKIVRGKRTQVKEPMFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I+ T++ T V F+ G P + + I + A V Sbjct: 55 MFIELDPERVHTTTVQSTRGVSHFVRFGALPVTIP---FKVIKQLMMAPPTECVDPDTPA 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++ G F F I D EK R + + + + + EK+ Sbjct: 112 PGDTVVITSGAFEGFEAIYTEADGEK-RAILLLNLLNKPVQQSVENTDFEKL 162 >gi|262394904|ref|YP_003286758.1| transcriptional activator RfaH [Vibrio sp. Ex25] gi|262338498|gb|ACY52293.1| transcriptional activator RfaH [Vibrio sp. Ex25] Length = 166 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + +++ T V+ F+ G P V + +M + + S Sbjct: 53 CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNENTASEC 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+++ V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|308048785|ref|YP_003912351.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799] gi|307630975|gb|ADN75277.1| transcriptional acivator RfaH [Ferrimonas balearica DSM 9799] Length = 163 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 12/165 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E A + R L + E + +++G++ FP Y Sbjct: 4 WYLLYCKGKKEATARAYLEQR----NLSCFLPEAEVEC-----IKRGKRTLVTAPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ T+ P V + T +P+ + + I +++ Sbjct: 55 LFVRFDPFQTPITTVMSAPGVASVVRTDGKIAPIETAIVVAIRERLKR--AAVSLMDAPT 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 G+ V + DGPFA+ GI + D +K + + + I G+ P+ + Sbjct: 113 AGDTVEILDGPFANLQGIFREPDGDKRSL-LLLEILGQQKPISME 156 >gi|218458943|ref|ZP_03499034.1| transcription antitermination protein NusG [Rhizobium etli Kim 5] Length = 51 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/51 (72%), Positives = 43/51 (84%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V VSDGPFASFNG V++V EE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 1 GEQVRVSDGPFASFNGTVQDVAEERSRLKVEVSIFGRATPVELEYAQVEKV 51 >gi|77459037|ref|YP_348543.1| transcription antitermination protein nusG [Pseudomonas fluorescens Pf0-1] gi|77383040|gb|ABA74553.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf0-1] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 12/173 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P WY++Q +++A ++ + P V +G++ + FP Sbjct: 9 PNWYLLQCKPRQDERAHLNLLQ---------QNYVVFHPQLVSERVIRGKRQRVQESLFP 59 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ I+ D + ++ T V F+ P+ V + IEH+ + + Sbjct: 60 GYLFIQLSRDD-NWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDE-A 117 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + GE + + GP A G+ + RV + + R PV L + +E+ Sbjct: 118 LKPGENLQIVSGPLAPLEGVFLGLHG-TDRVMILLQFLNREQPVCLPLSVIER 169 >gi|150388252|ref|YP_001318301.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|150389724|ref|YP_001319773.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|150392051|ref|YP_001322100.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149948114|gb|ABR46642.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149949586|gb|ABR48114.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149951913|gb|ABR50441.1| NusG antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 162 Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 V SN E KA + + + ++ +P + R+G + ++ F GY+ + Sbjct: 2 HVKSNEEMKAKKLVEKEIED-------IKVIVPQRIIPEKRQGETRHVKKILFTGYLFLN 54 Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128 + Y+ +K P + FLG E P + E++ ++ +S V + G + Sbjct: 55 VELDVDTYYKLKRIPSIHRFLG-LEKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEGNK 113 Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V V GP G + VD+ K R V + + G V+L ++ Sbjct: 114 VQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159 >gi|302188213|ref|ZP_07264886.1| transcriptional activator RfaH [Pseudomonas syringae pv. syringae 642] Length = 170 Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 15/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E + E P + + + G + ++ FPG Sbjct: 9 RWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQADAKKTGIRGQADEPLFPG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I ++ I+ T V + G +P PV D IE I ++ P F Sbjct: 59 YLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLA----TPAPKTQF 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++ + I + D R + + + R V L + + I Sbjct: 115 ARGDAVLITHASWGDVEAIFLSEDG-TQRAVILLNMLQRQQKVVLPISSLSLI 166 >gi|119947068|ref|YP_944748.1| NusG antitermination factor [Psychromonas ingrahamii 37] gi|119865672|gb|ABM05149.1| NusG antitermination factor [Psychromonas ingrahamii 37] Length = 169 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 11/177 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ +W++V S E +A ++ + P + + +K E Sbjct: 1 MSLQWFVVYCKSREELRAQRNLE---------NQGVYSFFPKICKEKILRSKKKVVEEPL 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 FP Y+ + D+ + I+ T + F+ G + + + D +I+ I + S Sbjct: 52 FPSYLFVNISKNDEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNS 111 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 ++ G+++ + GPF I N+++ R + + I + + + ++K+ Sbjct: 112 EDVYQNGDKIEILSGPFKGLTAIF-NIEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >gi|297519742|ref|ZP_06938128.1| transcription antitermination protein NusG [Escherichia coli OP50] Length = 114 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + S+ + ++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMNQ 109 GYVL++ VM D +H ++ P+V+GF+G + P+P++D E++ IMN+ Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 >gi|91225922|ref|ZP_01260891.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01] gi|269966032|ref|ZP_06180123.1| transcriptional activator RfaH [Vibrio alginolyticus 40B] gi|91189572|gb|EAS75848.1| transcriptional activator RfaH [Vibrio alginolyticus 12G01] gi|269829339|gb|EEZ83582.1| transcriptional activator RfaH [Vibrio alginolyticus 40B] Length = 166 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + +++ T V+ F+ G P V + +M + VS Sbjct: 53 CYVFAYFDYEQGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVFELMQLEKCCNDNTVSEC 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+++ V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MPKPGDQIRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|91203041|emb|CAJ72680.1| similar to transcription antitermination protein NusG [Candidatus Kuenenia stuttgartiensis] Length = 169 Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 18/181 (9%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M W+ V S EK+ + +P + +S R+ RK + Sbjct: 1 MEKNVAYWFAVHTRSRHEKQVDSFLRE---------KNISSFLPLVKTISRRRDRKKFID 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS--PVTDSEIEHIMNQVEAAVQ 115 FPGY+ + + + IK T V+ +G ++ P+ D+EI ++ + + V Sbjct: 52 VPLFPGYLFVNITLDNLYE--IKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVA 109 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G +V V GP G++ RV V + I + T E++ +E Sbjct: 110 IDPYK-YLQKGTKVRVVSGPLIGLEGLLVKRKT-NYRVVVSIDILQKSTSAEISIADIES 167 Query: 176 I 176 I Sbjct: 168 I 168 >gi|163802557|ref|ZP_02196449.1| transcriptional activator RfaH [Vibrio sp. AND4] gi|159173640|gb|EDP58459.1| transcriptional activator RfaH [Vibrio sp. AND4] Length = 166 Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTLEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + + +++ T V+ F+ G P V I + + + Sbjct: 53 CYVFARFDYEKGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLIYELKQLDKCVDDHTDAKN 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G+ V V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MPKPGDEVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|153834091|ref|ZP_01986758.1| transcriptional activator RfaH [Vibrio harveyi HY01] gi|148869556|gb|EDL68551.1| transcriptional activator RfaH [Vibrio harveyi HY01] Length = 166 Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + +G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILRGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + + + +++ T V+ F+ G P V + + + + + Sbjct: 53 CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGAQPKEVQGDLVYELKQLDKCIDDQTDAEN 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G++V V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MPKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|3810894|dbj|BAA34066.1| transcription antitermination protein [Vibrio alginolyticus] Length = 113 Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 72/107 (67%), Gaps = 1/107 (0%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+VQ +S E + +S+ + G++ L E+ +P+E VV +R G++ SER+FFP Sbjct: 7 KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGT-GENPSPVTDSEIEHIMN 108 GYVL++ +M D+ +H ++ P+V+GF+G + P+P+TD E + I+N Sbjct: 67 GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILN 113 >gi|163750517|ref|ZP_02157755.1| transcriptional activator rfaH, putative [Shewanella benthica KT99] gi|161329672|gb|EDQ00661.1| transcriptional activator rfaH, putative [Shewanella benthica KT99] Length = 180 Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 25/189 (13%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +AV L E +P+ KG+ + FP Sbjct: 2 KAWYLLYCKPRGEARAV---------HHLTLQEIETYLPTIGEEEKVKGQVIVKRIPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---------- 112 GY+ I I T V +G E+ + V D+ I I + Sbjct: 53 GYLFIYFDPQITSVARIHSTRGVGRIVGCKESMTTVDDNIIHSIKMREHKLLSELLPEYK 112 Query: 113 -----AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + + PV+ + F GE++ ++GPFA GI + + +K R HV I G+ + Sbjct: 113 AEGAGSDELPVTDIEFTPGEKIRFTEGPFAELEGIFEEKNGDK-RCHVLFEIMGQQKRIS 171 Query: 168 LAYNQVEKI 176 + ++ I Sbjct: 172 VPKKSIKPI 180 >gi|156935836|ref|YP_001439752.1| transcriptional activator RfaH [Cronobacter sakazakii ATCC BAA-894] gi|156534090|gb|ABU78916.1| hypothetical protein ESA_03719 [Cronobacter sakazakii ATCC BAA-894] Length = 184 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +GR+ + FP Y Sbjct: 26 WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 76 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ D TI T V F+ G +P+ V + IE +++ V P + Sbjct: 77 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 133 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + + K+ Sbjct: 134 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTEFRKV 184 >gi|70728935|ref|YP_262171.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5] gi|68343234|gb|AAY90840.1| transcriptional activator RfaH [Pseudomonas fluorescens Pf-5] Length = 239 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 16/172 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQ + +A E++ P V +GR+ + FPGY Sbjct: 84 WYLVQCKPRQDLRAEENLRR---------QGFHCYRPQRGCERVVQGRRQSGTESLFPGY 134 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I D + ++ T V + P V S IE + +V Sbjct: 135 LFIALEH-DASWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTDMDTSLPYK---- 189 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G RVC+++G FA I ++ + RV + + + + +EL + + KI Sbjct: 190 -GTRVCITEGCFADLEAIFESSIGD-ERVVLLLTLLNQQRRIELPLSSIRKI 239 >gi|160901844|ref|YP_001567425.1| NusG antitermination factor [Petrotoga mobilis SJ95] gi|160359488|gb|ABX31102.1| NusG antitermination factor [Petrotoga mobilis SJ95] Length = 354 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 46 VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105 ++ FPGYV ++ + + + + P V L G P + +E+ Sbjct: 218 FHKEIKIIKTKKKNLFPGYVFVEMMYIKETEELVSNLPYVSTILNIGGKPVKLNKNEVRF 277 Query: 106 IMNQVEAAV----QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ + Q FE+GE V + +GPF F G +K+ D EK V V V +FG Sbjct: 278 VLRVMGEEAYQKRQVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFG 337 Query: 162 RVTPVELAYNQVEKIV 177 R T V L+ ++EKI+ Sbjct: 338 RETTVTLSLGEIEKII 353 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M WY++QVYS E K E++ R+ G + +I IP ++ R Sbjct: 1 MRKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIPEVDELNYSNKRVQKIY 57 >gi|271498773|ref|YP_003331798.1| NusG antitermination factor [Dickeya dadantii Ech586] gi|270342328|gb|ACZ75093.1| NusG antitermination factor [Dickeya dadantii Ech586] Length = 162 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ +A E + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V IE + + P + + Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPET---PQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F+ I D E +R + + + + + Q K+ Sbjct: 112 PGDQVTITEGVFSGLEAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRKV 162 >gi|307133036|ref|YP_003885052.1| transcription antiterminator protein [Dickeya dadantii 3937] gi|4163101|emb|CAA10615.1| transcriptional activator [Erwinia chrysanthemi] gi|306530565|gb|ADN00496.1| transcription antiterminator protein [Dickeya dadantii 3937] Length = 162 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 13/171 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ +A E + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V I+ ++ A P + Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIDDLLQHPCATHIDPEM---PQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G++V +++G F+ I D E +R + + + + + Q K Sbjct: 112 PGDQVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161 >gi|310642839|ref|YP_003947597.1| nusg antitermination factor [Paenibacillus polymyxa SC2] gi|309247790|gb|ADO57357.1| NusG antitermination factor [Paenibacillus polymyxa SC2] Length = 173 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 11/179 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V + E++ + D V + IP + + G FP Sbjct: 1 MNWYVLFVRTGREERVKQLFNKW-----FDSEVYKPFIPIQERLFKVAGTVKKELAPLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVI-----GFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 YV I++ + D + T ++ L + + + D E ++ + Sbjct: 56 SYVFIESNLPDLQFVTSTNSMIYTSSDIIRLLRYSKLEASMRDCER-QVLESLCNDRYCI 114 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 S G+ + + +GP + IVK +D K + +++ G + V +A + K+ Sbjct: 115 ECSTGIIEGDNIRIIEGPLKGRSSIVKKIDRHKRQAVIQLEFMGDIRLVNVALEIISKV 173 >gi|194335749|ref|YP_002017543.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|194308226|gb|ACF42926.1| NusG antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 196 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 11/164 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V V S EKK + + +P RK F GY Sbjct: 9 WYAVYVRSRYEKKVYQLLLE---------QGVVSFLPLLDTWKQWSDRKKRVSEPLFRGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + + + + DT V+ F+G G PS + +I+ + V V Sbjct: 60 VFVNIDLVREKIRVL-DTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVSLP 118 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 G+RV V GPF F G+V E SR+ V + V + Sbjct: 119 AGQRVKVLAGPFKDFEGVVVKQGRE-SRLVVFFESIMQGVEVTI 161 >gi|156973628|ref|YP_001444535.1| transcriptional activator RfaH [Vibrio harveyi ATCC BAA-1116] gi|156525222|gb|ABU70308.1| hypothetical protein VIBHAR_01331 [Vibrio harveyi ATCC BAA-1116] Length = 166 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ ++ L++ E P+ V + G++ E FP Sbjct: 2 KRWYLLYCKRG---------EQVRAKQHLENQGVECFYPTVEVEKILHGKRQKVEEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + + + +++ T V+ F+ G P + + + + + + Sbjct: 53 CYVFARFDYEEGPNFTSVRSTRGVVDFVRFGVQPKEIQGDLVYELKQLDKCIDDQTDAES 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + G++V V G FA + I + D EK R + V + + PV + + + Sbjct: 113 MLKPGDQVRVKSGQFAGIDAIFQEQDGEK-RSIMLVQMITKRVPVSIDNSDL 163 >gi|119775400|ref|YP_928140.1| transcriptional activator rfaH [Shewanella amazonensis SB2B] gi|119767900|gb|ABM00471.1| transcriptional activator rfaH, putative [Shewanella amazonensis SB2B] Length = 167 Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 10/174 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A +++ S L+ + + + V G SE FP Sbjct: 2 KAWYLIYCKPRNEMRAQQNL----SMQNLETYLPKH----RKQVKASGGAVSVSESVLFP 53 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ +I T V +G E +P+ D+ I + + E V++ Sbjct: 54 NYLFVQFDPEVTSVRSIHATRGVSRIVGCSEQMTPIDDALI-RALKRKELQVEKLACEKP 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GERV GPF+ I D K R V G+ +++ + + +I Sbjct: 113 LAAGERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSIVRI 165 >gi|294085518|ref|YP_003552278.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665093|gb|ADE40194.1| hypothetical protein SAR116_1951 [Candidatus Puniceispirillum marinum IMCC1322] Length = 172 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 10/172 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W Q+ N KA ++ D P +R + ++ FPGY Sbjct: 11 WVAAQLKPNALAKAQRNL---------DRQGFVYFCPMQRETVRSAAQFRQQTKQLFPGY 61 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + T + + G +++ + ++ Sbjct: 62 CFVHMNPASGDVRKLNATHGISRLVSFGAGQISKVPTQLIAALQNRCDETNCLIAPASLA 121 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V + G FA F G V+ + + R+ + G+ + V++ +EK+ Sbjct: 122 VGDEVRILSGAFAEFVGTVETISKS-DRLRILFDFMGQKSHVDMPQQNLEKL 172 >gi|308069775|ref|YP_003871380.1| hypothetical protein PPE_03019 [Paenibacillus polymyxa E681] gi|305859054|gb|ADM70842.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 173 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 11/179 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+ V + E++ + I LD V + IP + + G FP Sbjct: 1 MSWYVFFVRTGREEQVKQLINEW-----LDSEVYKPFIPLQERLFKVAGIVKKEWAPLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVI-----GFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 YV I++ + D + T ++ L + + + DSE ++ + Sbjct: 56 SYVFIESNLPDLQFVTSTNSMICTSSDIIRLLRYSKYEASMRDSEK-QMLESLCNDSYCI 114 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SS G+ + + DGP IVK +D K + +++ G + V +A + K+ Sbjct: 115 ESSTGIIEGDNIRILDGPLKGRGSIVKKIDRHKRQAVIQLEFMGDIRLVRVALEIISKV 173 >gi|312960453|ref|ZP_07774962.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6] gi|311285338|gb|EFQ63910.1| transcriptional antiterminator RfaH [Pseudomonas fluorescens WH6] Length = 169 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 15/173 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+VQ + +++A + L + KG + F Sbjct: 9 AKAWYLVQCKARQDERA---------EAHLQRQGYTCFRSICTRERLLKGERRVMTESLF 59 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ D + ++ T V + G +P PV D ++ + + +P+ + Sbjct: 60 PGYLFIQLSSQDS-WSPLRSTRGVSRIVAFGGDPLPVGDELVDELQRR----NHQPLVTP 114 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + GE V +++GPFA G+ + E R V + + R V L N V+ Sbjct: 115 LWAPGENVRINEGPFAELEGVFLGMTGE-ERAIVLINLLHREHRVGLPLNAVK 166 >gi|323138187|ref|ZP_08073260.1| NusG antitermination factor [Methylocystis sp. ATCC 49242] gi|322396649|gb|EFX99177.1| NusG antitermination factor [Methylocystis sp. ATCC 49242] Length = 186 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 11/170 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+ Q + E A + + P + FPG Sbjct: 25 RWYVAQTLARREAGAGAQLVA---------QGFAVFTPQVIKTVRHARKLRTVRAPAFPG 75 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ + + + ++ T V + + P PV +E ++ V+ Sbjct: 76 YLFVILDLNRDRWRSVNGTFGVARMIMGEDVPMPVPAGVVETLLGYVDE-AGVCRFDRDL 134 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+ V V+ GPFA G + +D RV V + I G P L + + Sbjct: 135 VEGQAVRVTVGPFAQAIGELVRLDA-NGRVRVLLEIMGGKIPATLERSSL 183 >gi|289577938|ref|YP_003476565.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9] gi|297544211|ref|YP_003676513.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527651|gb|ADD02003.1| NusG antitermination factor [Thermoanaerobacter italicus Ab9] gi|296841986|gb|ADH60502.1| NusG antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 179 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ E K + I ++ +P +++ KG+ V + FP Sbjct: 2 KKWYVIFTRGGFENKVKDIIQNCFKEE------VKLLVPKRKIIERVKGQPVEKIKLLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D++Y+ + + K FL G+ P+ V + E++ I++ ++ + VS Sbjct: 56 GYVFVNAEMSDELYYKMSEVLKRGVFLKEGKRPAFVREEEMKIILSLIKNSDLIDVSKGI 115 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V + I G + V+LA +E Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVMLSIAGELKSVDLAIEVIE 166 >gi|253991350|ref|YP_003042706.1| transcriptional activator RfaH [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782800|emb|CAQ85965.1| transcriptional activator rfah [Photorhabdus asymbiotica] Length = 162 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A+E++ P+ R+ + +G++ + Sbjct: 1 ME-NWYLIYCKRGQISRAIENLER---------QDVACLTPTARIEKITRGKRTVNTEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G +P+ V ++ I+ I++ E P + Sbjct: 51 FPNYLFVQFDPEVIHTTTINSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V +++G F I D E R + + I R P L Q KI Sbjct: 111 VA---GDTVLITEGIFEGLQAIYNEPDGET-RSILLLNILNRQLPKALDNKQFVKI 162 >gi|237799523|ref|ZP_04587984.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022379|gb|EGI02436.1| transcriptional activator RfaH [Pseudomonas syringae pv. oryzae str. 1_6] Length = 166 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++Q E +A E L E P + R+ FPG Sbjct: 9 RWYLIQTKPRQEARAAE---------HLQRQHFECYRPLQATAKRTVAREAL-----FPG 54 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ I+ ++ I+ T V + G P PV D+ IE I ++ P + F Sbjct: 55 YLFIRMDQVHDNWYPIRSTRGVSRIVTFGGQPVPVRDALIEQIRQRLS----APSADTRF 110 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++ G ++ I D R + + + R V L + + ++ Sbjct: 111 TRGDIVLINTGSLSAVEAIFLTADGS-ERAVILLSMLQRQHQVVLPISSLSRV 162 >gi|255283968|ref|ZP_05348523.1| putative transcription antiterminator [Bryantella formatexigens DSM 14469] gi|255265550|gb|EET58755.1| putative transcription antiterminator [Bryantella formatexigens DSM 14469] Length = 183 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 5/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV + E++ ++S + L+ + IP V +G ++ FPGY Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGEWKTQKQILFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + ++ +K + +GTG P++++E E ++ Q S Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGE-EQVVQMSEGII 131 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G +V + GP G ++ +D K + +E+ + G + V++ V K Sbjct: 132 TGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >gi|220923469|ref|YP_002498771.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219948076|gb|ACL58468.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 178 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W++VQ E++ VE + + + +P RV +VR+GRKV+ + F Sbjct: 5 AKTWFVVQTGPARERRVVELLAREGA---------DTWLPLFRVTTVRRGRKVDDFEKVF 55 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 YV M + + D V+ LG D+ Sbjct: 56 ASYVFAGLDEETMRRRGTSVLFDCDHVLDVLGVDRPLPFPADALQVLADRLAGHNRDETE 115 Query: 117 ----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + +VGE + +GPF SF V+ V + V IFGR+TPVE +Q Sbjct: 116 EGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFTPDQ 174 Query: 173 V 173 + Sbjct: 175 L 175 >gi|330953998|gb|EGH54258.1| transcriptional activator RfaH [Pseudomonas syringae Cit 7] Length = 170 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 20/181 (11%) Query: 1 MTP-----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M+ RWY++Q E +A E + E P +V + + G +V Sbjct: 1 MSHSDQDVRWYLIQTKPRQEARAEEHLRR---------QQFECYRP-LQVDAKKPGTRVQ 50 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + FPGY+ I ++ I+ T V + G +P PV D IE I ++ Sbjct: 51 AGEALFPGYLFIHMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRL----A 106 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P F G+ V ++ + I + D R + + + R V L + + + Sbjct: 107 TPAPKTQFTQGDAVLITHASWGEVEAIFLSEDGA-QRAVILLNMLQRQQKVVLPISSLSR 165 Query: 176 I 176 I Sbjct: 166 I 166 >gi|254490679|ref|ZP_05103864.1| KOW motif domain protein [Methylophaga thiooxidans DMS010] gi|224464135|gb|EEF80399.1| KOW motif domain protein [Methylophaga thiooxydans DMS010] Length = 56 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 41/53 (77%) Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 FE GE V V+DGPF F G+V+ V+ EKS++ VEVVIFGR TPVEL ++QV K Sbjct: 3 FEPGEVVRVTDGPFNDFTGVVEEVNYEKSKLRVEVVIFGRSTPVELEFSQVAK 55 >gi|260596064|ref|YP_003208635.1| transcriptional activator RfaH [Cronobacter turicensis z3032] gi|260215241|emb|CBA27127.1| Transcriptional activator rfaH [Cronobacter turicensis z3032] Length = 179 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 13/171 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +GR+ + FP Y Sbjct: 21 WYLLYCKRGQLQRAKEHLERQSVN---------CLTPMITLEKMVRGRRTSVSEPLFPNY 71 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ D TI T V F+ G +P+ V + IE +++ V P + Sbjct: 72 LFVRFDPEDIHTTTISSTRGVSHFVRFGSHPAVVPQTVIEQLLDWHPENVTDPDT---PH 128 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G F I D E +R + + + + + + K Sbjct: 129 TGDMVVITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTEFRK 178 >gi|330986281|gb|EGH84384.1| transcriptional activator RfaH [Pseudomonas syringae pv. lachrymans str. M301315] Length = 170 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 RWY++Q E +A E + + P +V + +V ++ F Sbjct: 7 EARWYLIQTKPRQEARAEEHLRR---------QHFQCYRP-LQVDVKKTAARVQADEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ I+ ++ I+ T V + G +P PV D IE I ++ P Sbjct: 57 PGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLS----TPAPKA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+ V ++ ++ I + D R + + + R + L + + ++ Sbjct: 113 RFIQGDPVMITTSSWSDVEAIFLSEDG-TERAVILLNMLQRQQKMVLPISSLSRV 166 >gi|114775633|ref|ZP_01451201.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1] gi|114553744|gb|EAU56125.1| Transcriptional activator RfaH [Mariprofundus ferrooxydans PV-1] Length = 172 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 14/170 (8%) Query: 1 MT-PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M+ +W+ ++V E A ++ E+ +P G+ R Sbjct: 1 MSDKQWFAIRVKPRQESLAAANLER---------QGFEVYLPMINTRISHAGKVSWQPRP 51 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FF GY+ + + ++ + TI+ T V+ + G P++D I + + + VS Sbjct: 52 FFAGYLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVS 111 Query: 120 SVFFEV---GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 S GE+V + DG G+ + + R + + + V Sbjct: 112 STPESPFRAGEKVRMLDGAMKGLEGVFIEM-RGQDRALILLDWMKKSMRV 160 >gi|331035493|gb|AEC53050.1| NusG antitermination factor [Synechococcus phage S-CRM01] Length = 193 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY VQV + CEKKA+ + R S G D + ++ +P VV+V +K +++ Sbjct: 5 KDWYCVQVAAGCEKKAMADLKARKSVLG-DIFIQDVEVPQHTVVTVDDKGKKKSTKTNIL 63 Query: 62 PGYVLIKA---------------VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 PGY+L++ V + I+ T V+GF G + V + Sbjct: 64 PGYILVQVKKEKIETEEEGVFVEVFPASSHDIIRSTFNVLGFAGPDKKKPRVMPASEVRT 123 Query: 107 MNQVEAAVQRPVSS---VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + + + ++VG+++ V +GPF N IV ++ +K V EV +FGR+ Sbjct: 124 IFSQVDDAYKETKTNLLADYKVGDKLTVINGPFEGKNIIVDSIRGDK--VTAEVDMFGRI 181 Query: 164 TPVELAYNQVEK 175 T VE + Q+ K Sbjct: 182 TTVEFSKEQLLK 193 >gi|298385535|ref|ZP_06995093.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298261676|gb|EFI04542.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 192 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + G+++ IP ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVSEYLDK----MGIEN-----FIPLQQEMHQWSDRRKLIESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P V + A ++V T + NP+ + D ++ ++ + + S Sbjct: 75 PMMVFVHADPKERVEVLSLSTVSRYMVMRGESNPAVIPDEQMARFRFMLDYSKEAVCMSS 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + +VD KS++ V + + G Sbjct: 135 SPLARGEQVRVIKGPLSGLVGELVSVDG-KSKIAVRLNMLG 174 >gi|255282325|ref|ZP_05346880.1| putative transcription antiterminator [Bryantella formatexigens DSM 14469] gi|255267273|gb|EET60478.1| putative transcription antiterminator [Bryantella formatexigens DSM 14469] Length = 183 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV + E++ ++S + L+ + IP V +G ++ FPGY Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGVWKTQKQILFPGY 72 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + ++ +K + +GTG P++++E E ++ Q S Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGF-GGKEQVVQMSEGII 131 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G RV + GP G ++ +D K + +E+ + G + V++ V K Sbjct: 132 TGSRVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >gi|253567771|ref|ZP_04845182.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298388201|ref|ZP_06997734.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|251841844|gb|EES69924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298259039|gb|EFI01930.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 192 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+ V + EKK E +G E +P ++ + R+ E P Sbjct: 25 KRWYVAHVRIHHEKKVAEYLGKM---------GIETFVPVQQEIHQWSDRRKLVETVLLP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 V + A +++ T L P+ + D ++ ++ + + + Sbjct: 76 MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMARFRFMLDYSEEAICMNYS 135 Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V V GP G + +D KS++ V + + G V++ VE+I Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLGCAC-VDMPIGYVEQI 188 >gi|59711410|ref|YP_204186.1| transcriptional activator RfaH [Vibrio fischeri ES114] gi|59479511|gb|AAW85298.1| DNA-binding transcriptional antiterminator [Vibrio fischeri ES114] Length = 164 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 68/173 (39%), Gaps = 12/173 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ ++ L++ + E P V + +G++ + FP Sbjct: 2 KQWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFP 52 Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ I + +I+ T V F+ G P + I + ++ + Sbjct: 53 CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIY-SLKALDENNNKEKLEC 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E G++V + +GP++ I K D EK R + + + + +++ + +E Sbjct: 112 LPEAGQKVAIKEGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163 >gi|78188132|ref|YP_378470.1| NusG antitermination factor [Chlorobium chlorochromatii CaD3] gi|78170331|gb|ABB27427.1| transcription antitermination protein nusG [Chlorobium chlorochromatii CaD3] Length = 197 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V V S EKK +++ R +P + RK F G Sbjct: 9 NWYAVYVRSRYEKKVYQALLEREVN---------SFLPLYETIRQWSDRKKKVSEPLFRG 59 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + M + + DT V+ F+G G PS + + EIE + V + Sbjct: 60 YVFVNIAM-QQESIKVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASL 118 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVI 159 G++V V GPF G+V E V VEV I Sbjct: 119 PAGQKVRVIAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSI 162 >gi|167037961|ref|YP_001665539.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040859|ref|YP_001663844.1| NusG antitermination factor [Thermoanaerobacter sp. X514] gi|320116378|ref|YP_004186537.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855099|gb|ABY93508.1| NusG antitermination factor [Thermoanaerobacter sp. X514] gi|166856795|gb|ABY95203.1| NusG antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929469|gb|ADV80154.1| NGN domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 179 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S E K + I ++ IP +++ KG+ V + FP Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S Sbjct: 56 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V I G + V+LA +E Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >gi|167957244|ref|ZP_02544318.1| transcription antitermination factor [candidate division TM7 single-cell isolate TM7c] Length = 75 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 39/63 (61%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V+ P + FE GE V V DGPF F+G + +D K ++ V V +FGR TPVEL QV Sbjct: 13 VEEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRDTPVELDALQV 72 Query: 174 EKI 176 +KI Sbjct: 73 KKI 75 >gi|256751800|ref|ZP_05492673.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|256749328|gb|EEU62359.1| NusG antitermination factor [Thermoanaerobacter ethanolicus CCSD1] Length = 179 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S E K + I ++ IP +++ KG+ V + FP Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S Sbjct: 56 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 115 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V I G + V+LA +E Sbjct: 116 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >gi|89073226|ref|ZP_01159756.1| transcriptional activator RfaH [Photobacterium sp. SKA34] gi|89050936|gb|EAR56400.1| transcriptional activator RfaH [Photobacterium sp. SKA34] Length = 165 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ S E+ + L+ P V V +G+++ S F Sbjct: 2 KDWYLLYCKRSEQERAVI----------NLERQGVGCYYPQVTVKKVSRGKRIESIEPLF 51 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YV ++ Y +++ T V F+ G P V + I ++M ++ + + S+ Sbjct: 52 PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEKHQRLLSI 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ + + G F I + D EK R + + + G+ V + + K Sbjct: 112 LPQPGDTLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164 >gi|220928294|ref|YP_002505203.1| NusG antitermination factor [Clostridium cellulolyticum H10] gi|219998622|gb|ACL75223.1| NusG antitermination factor [Clostridium cellulolyticum H10] Length = 173 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 11/179 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V + E+ + + R LD + +P + + G + FP Sbjct: 1 MYWYVLFVRTGREENVKKLLSKR-----LDKDLFLPFVPLNERIFKKAGTVNKNMEILFP 55 Query: 63 GYVLIKA-----VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 GYV I++ +K +I + + V +SE I+ + Sbjct: 56 GYVFIESKVASQEFVKMTNELMKSLQDIIRLVRYSDIEIAVRESERI-ILQSLYNNNNCI 114 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 SS G+++ + DGP IV++++ K +E+ G + V ++ V+K+ Sbjct: 115 ESSSGIIKGDKIYIIDGPLRGRESIVRHINRHKREAKIEIEFMGNIRLVSVSLEIVQKL 173 >gi|300914898|ref|ZP_07132214.1| NusG antitermination factor [Thermoanaerobacter sp. X561] gi|307723869|ref|YP_003903620.1| NusG antitermination factor [Thermoanaerobacter sp. X513] gi|300889833|gb|EFK84979.1| NusG antitermination factor [Thermoanaerobacter sp. X561] gi|307580930|gb|ADN54329.1| NusG antitermination factor [Thermoanaerobacter sp. X513] Length = 184 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S E K + I ++ IP +++ KG+ V + FP Sbjct: 7 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + A M+D +Y+ I + K FL G+ P+ V + E++ I++ + + +S Sbjct: 61 GYVFVNAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGI 120 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E GERV + +GP + G++K +D+ K R V I G + V+LA +E Sbjct: 121 ME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 171 >gi|240047307|ref|YP_002960695.1| transcription antitermination protein NusG [Mycoplasma conjunctivae HRC/581] gi|239984879|emb|CAT04872.1| Transcription antitermination protein [Mycoplasma conjunctivae] Length = 184 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 73/181 (40%), Gaps = 14/181 (7%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLD-----HLVTEITIPSERVVSVRKGRKVNSERRFFP 62 + SN E A+ + R+ G + + + +P + +K + + Sbjct: 2 ISTISNKEDTAITLLKNRIEHEGPEMKAHFKEIIKFDVPYYAEKENTQEKK-IKYQNLYK 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-------EIEHIMNQVEAAVQ 115 GY IK M D+ ++ +++T + G +G+ + T ++ + Q Sbjct: 61 GYFFIKMDMNDQAWYIVRNTQYITGLVGSHGRGAKPTPISDRHFKKMKDNWEQIINDFKQ 120 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV-IFGRVTPVELAYNQVE 174 ++ ++ + V + DGPF G V + +++ + VE+ +FG+ Y VE Sbjct: 121 YKGITLKIKIDDLVKIIDGPFNGDIGRVVAISDDRKVIDVELDNVFGKKAITSFDYKVVE 180 Query: 175 K 175 K Sbjct: 181 K 181 >gi|27363666|ref|NP_759194.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6] gi|27359782|gb|AAO08721.1| transcriptional activator RfaH [Vibrio vulnificus CMCP6] Length = 168 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ ++ L++ E P+ V + +G++ FP Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120 Y+ ++ + T++ T V+ F+ G +P + I + + + S Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHESALQGS 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ + V G FA I + D E R + V + + PV + + +E Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165 >gi|133872302|gb|ABO40221.1| transcription antitermination component [Candidatus Liberibacter africanus] Length = 49 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 42/49 (85%), Positives = 46/49 (93%) Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VCVSDGPFASFNGIVK+VDEE+SR+ VEV IFGR TPVELAYNQVEK+V Sbjct: 1 VCVSDGPFASFNGIVKDVDEERSRLKVEVSIFGRATPVELAYNQVEKVV 49 >gi|330446599|ref|ZP_08310251.1| transcriptional activator RfaH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490790|dbj|GAA04748.1| transcriptional activator RfaH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 165 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ S E+ + LD + P V + +G++ S F Sbjct: 2 KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVQKITRGKRAESIEPLF 51 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YV + Y +++ T V F+ G P V + I ++M ++A + + S+ Sbjct: 52 PNYVFVHFDPEVVSYTSVRSTRGVADFIRCGTFPQKVREELIYNLMMNEDSAEHQRLLSM 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + GE++ + G F I + D EK R + + + G+ V + + K Sbjct: 112 LPQPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSVENTDLLK 164 >gi|309777610|ref|ZP_07672562.1| putative transcription antiterminator [Erysipelotrichaceae bacterium 3_1_53] gi|308914699|gb|EFP60487.1| putative transcription antiterminator [Erysipelotrichaceae bacterium 3_1_53] Length = 176 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ V EKK +E + + + P + VV +G++V ++ Sbjct: 1 MMKPWYVLYVMGGREKKILELLNQK--------EDVKAFTPLKEVVHRIQGKRVIVKKPL 52 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-----EIEHIMNQVEAAVQ 115 FP YV ++ + + G + D E + + Sbjct: 53 FPSYVFVETELNPTGFQQAL-IQYRSQISGILKELKYENDISALSAEERAYLEGLMDREH 111 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S + V +++GP + + +D K R + V + R V+++ V+K Sbjct: 112 NVRLSKGEILDGEVIITEGPLKGYESNIIRIDRHKRRAILNVQMNERKLQVDVSLEIVKK 171 Query: 176 I 176 I Sbjct: 172 I 172 >gi|315647771|ref|ZP_07900872.1| putative transcription antitermination protein [Paenibacillus vortex V453] gi|315276417|gb|EFU39760.1| putative transcription antitermination protein [Paenibacillus vortex V453] Length = 192 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 30/197 (15%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY + V + E + R + L ++ + +P + + + FP Sbjct: 1 MSWYALFVKTGYESSIKRWLDTRFDNNLLHSVIPKRKVP-----EKKDRTVQHVIKTLFP 55 Query: 63 GYVLIKAVMTDKVYHTIKD---TPKVIGFLGTGENPSPVTDS------------------ 101 GYV I+ M+ +Y+T+K+ + +L + S + D Sbjct: 56 GYVFIETKMSFSIYYTLKENPFIYNTLNYLNNKDKRSTLPDVQMASVASERPAAESHFFK 115 Query: 102 ----EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 E ++ Q+ + S + +V V GP +K VD+ K R V + Sbjct: 116 EIPSEEMLVVLQLINENEVIEYSQVYFQDSKVIVQSGPLKGLESHIKKVDKHKKRAKVLM 175 Query: 158 VIFGRVTPVELAYNQVE 174 I G+ V++ +E Sbjct: 176 NIMGKEQLVDVGIEIIE 192 >gi|295106882|emb|CBL04425.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b] Length = 162 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 4/164 (2%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 + E I S D ++ E +P V +G FPGY+++ + Sbjct: 2 AGREFAVQRQIEQFAS----DDVLDECFVPQYEVQKHLRGEWRTCTAVLFPGYLIVVSDR 57 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131 ++ +K P+ L P+ E+ I E + S G+++ V Sbjct: 58 IAELQAQLKQIPQFASVLNNDGTFIPLEPHEVAWIDAFTEKEHRVIGMSEGVIEGDQIVV 117 Query: 132 SDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GP + G ++ ++ K ++E+ +FGR ++ V K Sbjct: 118 LKGPLVNRTGWIRKINRRKRTAYLEIEMFGRTIQTKIGLGIVRK 161 >gi|29345786|ref|NP_809289.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337679|gb|AAO75483.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 192 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+ V + EKK E +G E +P ++ + R+ E P Sbjct: 25 KRWYVAHVRIHHEKKVAEYLGKM---------GIETFVPVQQEIHQWSDRRKLVETVLLP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 V + A +++ T L P+ + D ++ ++ + + + Sbjct: 76 MMVFVHADPKERMAALTLATVSRYMVLRGEGKPAVIPDDQMASFRFMLDYSEEAICMNYS 135 Query: 123 F-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V V GP G + +D KS++ V + + G V++ VE+I Sbjct: 136 PLARGKKVRVIKGPLTGLVGELVALDG-KSKIAVRLDMLGCAC-VDMPIGYVEQI 188 >gi|251791465|ref|YP_003006186.1| transcriptional activator RfaH [Dickeya zeae Ech1591] gi|247540086|gb|ACT08707.1| transcriptional acivator RfaH [Dickeya zeae Ech1591] Length = 162 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ +A E + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V I+ + N P + + Sbjct: 55 LFVEFDPEHIHTTTISATRGVSHFVRFGSLPALVPQQVIDDLQNHQCTPHIAPET---PQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G F+ I D E +R + + + + + Q K Sbjct: 112 PGDHVTITEGVFSGLQAIYTEPDGE-ARSMLLLNLLNKQVRQSIDNRQFRK 161 >gi|210631838|ref|ZP_03297080.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279] gi|210159958|gb|EEA90929.1| hypothetical protein COLSTE_00970 [Collinsella stercoris DSM 13279] Length = 192 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 4/175 (2%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY++QV E IG + +S L E+ P +GR V ++ Sbjct: 1 MRVQWYVIQVMKGREDSMASLIGRVVPKSLLQ----EVFSPKYETEIKVRGRWVPVQKTL 56 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGY++ + + ++D P+ L G P+ +E+E I + + S Sbjct: 57 LPGYLIAVTNDPEGLEAVLRDLPEFARLLAQGNEFVPLAPAEVEVIGSFTSPGKRVVPMS 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+RV V+ GP +VK + KS +EV + GRV + + K Sbjct: 117 IGVKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171 >gi|167623413|ref|YP_001673707.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4] gi|167353435|gb|ABZ76048.1| transcriptional acivator RfaH [Shewanella halifaxensis HAW-EB4] Length = 178 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 15/179 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ S E +A +++ + +P+ + KG+ FP Sbjct: 2 KAWYLIYCKSRGEARAQQNLAL---------QQIDTYLPTYPEEKLVKGQVSVRRVSLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA-----AVQRP 117 Y+ I I +T VI +G E + + DS I I + + Q Sbjct: 53 SYLFINFDPEVTSVSKIHNTRGVIRIVGCKELMTSIDDSVIHAIKMREHKLLSEISSQSA 112 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + E G++VC + GPF GI + EK R V + G+ V + + ++ + Sbjct: 113 EPAPKMEQGDKVCFTKGPFVELEGIFDEANGEK-RCFVLFELMGKQQRVVVDRDVIKHV 170 >gi|298481184|ref|ZP_06999378.1| transcriptional regulator [Bacteroides sp. D22] gi|298272758|gb|EFI14325.1| transcriptional regulator [Bacteroides sp. D22] Length = 188 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + +D +S++ V + + G Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTIDG-RSKIAVRLNMLG 173 >gi|218901298|ref|YP_002449132.1| transcription antitermination protein NusG [Bacillus cereus AH820] gi|218535625|gb|ACK88023.1| transcription antitermination protein NusG [Bacillus cereus AH820] Length = 96 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLXKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 FPGYVL++ +MTD ++ +++TP V GF Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGF 88 >gi|320157066|ref|YP_004189445.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O] gi|319932378|gb|ADV87242.1| transcriptional activator RfaH [Vibrio vulnificus MO6-24/O] Length = 168 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ ++ L++ E P+ V + +G++ FP Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQTKSEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120 Y+ ++ + T++ T V+ F+ G P + I + + Q S Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAQPKELQGDLIYELKLLEQEGHQSALQGS 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ + V G FA I + D E R + V + + PV + + +E Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165 >gi|160887485|ref|ZP_02068488.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483] gi|156107896|gb|EDO09641.1| hypothetical protein BACOVA_05504 [Bacteroides ovatus ATCC 8483] Length = 193 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLGKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + NVD KS++ V + + G Sbjct: 135 SPLARGEKVRVVKGPLSGLVGELVNVDG-KSKIAVRLNMLG 174 >gi|329898901|ref|ZP_08272499.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088] gi|328920709|gb|EGG28181.1| Transcriptional activator RfaH [gamma proteobacterium IMCC3088] Length = 168 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 11/168 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W +VQ E + L + +P + +G+ FP Sbjct: 1 MTWLVVQTKPKQED---------AAELNLSRQGYRVFLPKLQQRKRVRGKWQLVVSPLFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I ++ T + + G++ PV D +E + Q + + S + Sbjct: 52 RYLFIDVDYGTDDLAPVRSTVGIFNLVRFGQDIIPVPDEVVEFLQVQQDPTLGAKNESDW 111 Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + G++V + GPFA G+ + +++ R ++ + + GR + + + Sbjct: 112 PHKKGDKVEILQGPFAGLAGVFD-MSKDEERAYLFIELLGRASRIVVE 158 >gi|238755200|ref|ZP_04616545.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473] gi|238706541|gb|EEP98913.1| Transcriptional activator rfaH [Yersinia ruckeri ATCC 29473] Length = 162 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P+ + + +G++ S+ Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLER---------QQVVSFTPTAMMERIVRGKRQTSDVHL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ +K TI T V F+ G P+ V+++ I +++ + + P Sbjct: 51 FPNYLFVKFDPECIHTTTISATRGVSHFVRFGAGPTIVSENIINELISCSQKVIIDPAVP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V + +G FA I D E +R + + I + L+ +Q +KI Sbjct: 111 V---PGDIVRIKEGVFAGLEAIYNEPDGE-ARSMLLLNILNKPINQSLSNSQFDKI 162 >gi|220926326|ref|YP_002501628.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219950933|gb|ACL61325.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 218 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 13/175 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + +A + + +GL E GR+ Sbjct: 52 WLVARTRPRWSARAARDL----AEAGLATFEARE----EVERVEPNGRRRIVREPLLRRL 103 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI----MNQVEAAVQRPVSS 120 + + D ++ P V L + + ++ V++ Sbjct: 104 IFVGVR-DDAELRRVEAHPGVEQVLFREGRAVVIPPAMLQAFADALTGHTGEGEAEAVAA 162 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + F +G+ V V++GP A GIV+ VD + R V V +FGR TPV+L +Q+E+ Sbjct: 163 LLFALGDAVRVTEGPLARLPGIVEAVDPHRRRYRVAVEMFGRATPVDLDEDQIER 217 >gi|295084056|emb|CBK65579.1| Transcription antiterminator [Bacteroides xylanisolvens XB1A] Length = 188 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + VD +S++ V + + G Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173 >gi|189218043|ref|YP_001938685.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum infernorum V4] gi|189184901|gb|ACD82086.1| Transcriptional activator RfaH, NusG family [Methylacidiphilum infernorum V4] Length = 185 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 17/179 (9%) Query: 1 MTPRW------YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M RW Y + + EK AVE++ E+ P + +R + Sbjct: 1 MEKRWSEQSFWYCLSIQPKKEKLAVENLKKE---------NIEVFFPQFQYQKIRSRKTS 51 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV 114 FPGY+ K + K+ + T V + G + + DS IE + Q Sbjct: 52 LVLEPLFPGYLFAKFNLYSKLTFV-RSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEG 110 Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + +VG + +++GPF ++ IV K RV V + GR +E+ ++ Sbjct: 111 IK-TIRERIDVGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >gi|37679190|ref|NP_933799.1| transcriptional activator RfaH [Vibrio vulnificus YJ016] gi|37197933|dbj|BAC93770.1| transcription antiterminator [Vibrio vulnificus YJ016] Length = 168 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ ++ L++ E P+ V + +G++ FP Sbjct: 2 KKWYLLYCKRG---------EQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120 Y+ ++ + T++ T V+ F+ G +P + I + + Q S Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGS 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ + V G FA I + D E R + V + + PV + + +E Sbjct: 113 NLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165 >gi|160884473|ref|ZP_02065476.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483] gi|293369767|ref|ZP_06616343.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|299145978|ref|ZP_07039046.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] gi|156110212|gb|EDO11957.1| hypothetical protein BACOVA_02457 [Bacteroides ovatus ATCC 8483] gi|292635189|gb|EFF53705.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|298516469|gb|EFI40350.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] Length = 191 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + VD +S++ V + + G Sbjct: 134 APLARGEKVRVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173 >gi|90410777|ref|ZP_01218792.1| transcriptional activator RfaH [Photobacterium profundum 3TCK] gi|90328408|gb|EAS44706.1| transcriptional activator RfaH [Photobacterium profundum 3TCK] Length = 165 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W+++ S E+ + LD E P V + +G++V + F Sbjct: 2 KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVSVNKIVRGKRVETSEPLF 51 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ + Y T++ T V F+ G P V + +M + S Sbjct: 52 PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEDHQAKLSS 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GE + + G F I + D EK R + + + G+ V + + K Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164 >gi|293393998|ref|ZP_06638304.1| transcriptional activator RfaH [Serratia odorifera DSM 4582] gi|291423558|gb|EFE96781.1| transcriptional activator RfaH [Serratia odorifera DSM 4582] Length = 162 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G++ Sbjct: 1 ME-SWYLLYCKRGQLLRAQEHLERQAVN---------CLSPIITLEKIVRGKRTAVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + IE + + P + Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSLPTMIPLKVIEELRAHTSDSYVDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V ++DG F + I D E +R + + + + L Q EK+ Sbjct: 110 --PQPGDTVLITDGVFEGLHAIYTEPDGE-ARSMLLLNLINKQVTQSLDNRQFEKM 162 >gi|37528234|ref|NP_931579.1| transcriptional activator RfaH [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787671|emb|CAE16778.1| Transcriptional activator RfaH [Photorhabdus luminescens subsp. laumondii TTO1] Length = 162 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A+E++ P+ R+ + +G++ + Sbjct: 1 ME-NWYLIYCKRGQISRAIENLER---------QDVACLTPTARIEKITRGKRTVNIEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G +P+ V ++ I+ I++ E P + Sbjct: 51 FPHYLFVQFDPEIIHTTTIHSTRGVSHFVRFGVHPAIVPETLIKEIVSATEQEYVSPDTP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V G+ V ++ G F I D E R + + I + P L Q KI Sbjct: 111 VA---GDTVLITAGIFEGLQAIYNEPDGET-RSILLLNILNKQLPKALDNKQFVKI 162 >gi|218901299|ref|YP_002449133.1| transcription antitermination protein NusG [Bacillus cereus AH820] gi|229077392|ref|ZP_04210051.1| Transcription antitermination protein nusG [Bacillus cereus Rock4-2] gi|254724238|ref|ZP_05186023.1| transcription antitermination protein NusG [Bacillus anthracis str. A1055] gi|218536551|gb|ACK88949.1| transcription antitermination protein NusG [Bacillus cereus AH820] gi|228705917|gb|EEL58244.1| Transcription antitermination protein nusG [Bacillus cereus Rock4-2] Length = 68 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 42/66 (63%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + V FE+ E V V++GPFA + G ++ +D EK +V V V +FGR TPVEL + Sbjct: 3 HMGMDNEVVDFDFELHETVRVNEGPFADYTGAIEEIDVEKKKVSVLVDMFGRETPVELDF 62 Query: 171 NQVEKI 176 +Q+EK+ Sbjct: 63 HQIEKL 68 >gi|317052839|ref|YP_004119605.1| NusG antitermination factor [Pantoea sp. At-9b] gi|316953579|gb|ADU73049.1| NusG antitermination factor [Pantoea sp. At-9b] Length = 170 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 15/170 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59 M WY+ Q EK+A + + +P V ++ G + +E+ Sbjct: 1 ME-NWYVAQTKYAQEKRAQQQL---------QSQGVTCLLPVFSEVRLQNGGIRRIAEQP 50 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP Y+ ++ IK T V + G PS V DS I + P++ Sbjct: 51 LFPNYIFVRFDPEVVHTTAIKATRGVSTLISFGGLPSVVPDSVITRLNQ---GWESAPLT 107 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + G+RV + DG F + D K R + + + R PV + Sbjct: 108 TDAPAHGDRVVIRDGVFEGLEAVWYEPDGMK-RAMLLLTLMNRQVPVPVN 156 >gi|255692527|ref|ZP_05416202.1| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260621806|gb|EEX44677.1| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 190 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVAMVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKKVEAVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + NVD K+++ V + + G Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KTKIAVRLNLLG 174 >gi|90579282|ref|ZP_01235092.1| transcriptional activator RfaH [Vibrio angustum S14] gi|90440115|gb|EAS65296.1| transcriptional activator RfaH [Vibrio angustum S14] Length = 165 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY++ S E+ + LD + P V V +G+++ S F Sbjct: 2 KDWYLLYCKRSEQERAVI----------NLDRQGVDCYYPQVTVKKVSRGKRIESIEPLF 51 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P YV ++ Y +++ T V F+ G P V + I ++M ++ + + S+ Sbjct: 52 PSYVFVQFDPETVSYTSVRSTRGVADFIRCGAMPQKVREELIYNLMMNEDSEEHQRLLSM 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GE++ + G F I + D EK R + + + G+ V + + K Sbjct: 112 LPLPGEKLKLEQGKFQGLEAIYQEPDGEK-RSFMLINLLGKPVKVSIENTDLLK 164 >gi|160885742|ref|ZP_02066745.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483] gi|293370261|ref|ZP_06616821.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|299146226|ref|ZP_07039294.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] gi|156108555|gb|EDO10300.1| hypothetical protein BACOVA_03746 [Bacteroides ovatus ATCC 8483] gi|292634758|gb|EFF53287.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|298516717|gb|EFI40598.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] Length = 193 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP G + VD +S++ V + + G ++ VEKI Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLGCAC-ADMPVGYVEKI 187 >gi|121606088|ref|YP_983417.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120595057|gb|ABM38496.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 184 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++ E ++ L ++ +P + + F Y Sbjct: 23 WFLAHTRPRLE---------TVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRY 73 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF- 123 V + + ++ T V + G + + ++ I + V+ + Sbjct: 74 VFFRTTSLAQSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTL 133 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G V + + G+VK+V RV V + I GR V + ++Q+ Sbjct: 134 RPGHLVRFCNSALSGLEGVVKSVSS--CRVAVLLEIMGRQQLVRVDHHQL 181 >gi|300724670|ref|YP_003713995.1| lipopolysaccharide core, F pilin, and hemolysin export transcriptional activator [Xenorhabdus nematophila ATCC 19061] gi|297631212|emb|CBJ91907.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and haemolysin [Xenorhabdus nematophila ATCC 19061] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY++ +I L+ P+ ++ V +G++ FP Sbjct: 3 NWYLLYCKRGQ---VSRAIE------NLERQDVTCLTPTAKIEKVIRGKRTTITEPLFPN 53 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ + T+ T V F+ P+ V + I+ +M+ E P + Sbjct: 54 YLFVHFDPEVIHTTTVNSTRGVNNFIRFSTYPAIVPQALIDELMSVTEQEYVSPET---P 110 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + I + L Q K+ Sbjct: 111 MTGDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKTLDNKQFIKV 162 >gi|54309803|ref|YP_130823.1| transcriptional activator RfaH [Photobacterium profundum SS9] gi|46914241|emb|CAG21021.1| putative transcriptional activator RfaH [Photobacterium profundum SS9] Length = 165 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVY-SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W+++ S E+ + LD E P V + +G++V F Sbjct: 2 KDWFLLYCKRSEQERAVI----------NLDRQGVECYYPQVNVNKIVRGKRVEISEPLF 51 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ + Y T++ T V F+ G P V + +M V + S Sbjct: 52 PSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNENCEVHQAKLSS 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GE + + G F I + D EK R + + + G+ V + + K Sbjct: 112 LPIPGECLQLKQGQFKGIEAIYQEADGEK-RSFMLINLLGKPVKVSVENEDIVK 164 >gi|238784377|ref|ZP_04628387.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970] gi|238714669|gb|EEQ06671.1| Transcriptional activator rfaH [Yersinia bercovieri ATCC 43970] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G++ FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRTEVTEPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + D TI T V F+ G P+ + D I + + + P + Sbjct: 53 NYLFVAFDAEDIHTTTISATRGVSHFVRFGAQPAVIPDIVITEMQSHTTDKIIAPEVPL- 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G FA I D E +R + + + L Q EK Sbjct: 112 --PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161 >gi|325473561|gb|EGC76754.1| NusG family Transcription antitermination protein [Treponema denticola F0402] Length = 175 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 4/171 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y+VQV + E I ++ D L I P + + G+ + F GY+ Sbjct: 4 YVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFGGYL 60 Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 I ++ +Y ++ FL + P + + E + + +S V F+ Sbjct: 61 FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +R+ V +GP + G + V++ K R V + + ++L + + K Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171 >gi|197336161|ref|YP_002155565.1| transcriptional activator RfaH [Vibrio fischeri MJ11] gi|197317651|gb|ACH67098.1| transcriptional activator RfaH [Vibrio fischeri MJ11] Length = 164 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ ++ L++ + E P V + +G++ ++ FP Sbjct: 2 KEWYLLYCKRG---------EQERAKLHLENQMVECFYPEIVVEKIVRGKRKQAKEPLFP 52 Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ I + +I+ T V F+ G P + I + ++ + Sbjct: 53 CYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIY-SLKALDENNNKEKLEC 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 E G++V + GP++ I K D EK R + + + + +++ + +E Sbjct: 112 LPEAGQKVAIKKGPYSGIEAIYKEADGEK-RSILLITLINKKVEIKIPNSDIE 163 >gi|220927662|ref|YP_002504571.1| NusG antitermination factor [Clostridium cellulolyticum H10] gi|219997990|gb|ACL74591.1| NusG antitermination factor [Clostridium cellulolyticum H10] Length = 188 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 11/179 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY++ V S E + + + + ++ IP + G + FPG Sbjct: 16 HWYVLFVKSGREHRVEQYLKKIVGIDMIN-----PFIPLHEFLFKISGTVKRELKPLFPG 70 Query: 64 YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 YV I++ M + Y+ I ++ L + V DSE + +++ Sbjct: 71 YVFIESDMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSEKQMLLDLCNNEHCIES 130 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 S G+R+ +++GP I+K V+ K + VE+ G V +A VEK+V Sbjct: 131 SR-GVIKGDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKVV 188 >gi|42526227|ref|NP_971325.1| NusG family transcription antitermination protein [Treponema denticola ATCC 35405] gi|41816339|gb|AAS11206.1| transcription antitermination protein, NusG family [Treponema denticola ATCC 35405] Length = 175 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 4/171 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y+VQV + E I ++ D L I P + + G+ + F GY+ Sbjct: 4 YVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFAGYL 60 Query: 66 LIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 I ++ +Y ++ FL + P + + E + + +S V F+ Sbjct: 61 FIGTDEISKDLYQHLRKCKGFYRFLPNNQEPKFLEGRDFEILNQFISFGGLAKISQVVFD 120 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +R+ V +GP + G + V++ K R V + + ++L + + K Sbjct: 121 ENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171 >gi|317046423|ref|YP_004114071.1| NusG antitermination factor [Pantoea sp. At-9b] gi|316948040|gb|ADU67515.1| NusG antitermination factor [Pantoea sp. At-9b] Length = 162 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G++ Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLERQAVN---------CLSPMIALEKIVRGKRTTVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V IE + + P + Sbjct: 51 FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTMPATVPYEVIEALQCDAPQILIDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +VG+ V +++G F I D E R + + + + + Q K Sbjct: 110 --PQVGDEVIITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRK 161 >gi|262276329|ref|ZP_06054138.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886] gi|262220137|gb|EEY71453.1| transcriptional activator RfaH [Grimontia hollisae CIP 101886] Length = 165 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 11/175 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M P WY++ + + + L + P V +R+G++ + Sbjct: 1 MDP-WYLLYCKRS---------EQQRAEQHLKRQGVDCYYPQVMVEKIRRGKRSSELEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP YV + T++ T V+ F+ G P+ V I H+M ++ QR S Sbjct: 51 FPNYVFASFDPEKISFTTVRSTRGVVDFVRQGLMPTVVPAELITHLMAHEDSDEQREALS 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F+ G++V V G F I K D E R + + + R V + K Sbjct: 111 DVFKPGDQVEVLSGLFEGTEAIYKEADGE-LRSILLINLISRQVEVSTENKVIRK 164 >gi|261211969|ref|ZP_05926255.1| transcriptional activator RfaH [Vibrio sp. RC341] gi|260838577|gb|EEX65228.1| transcriptional activator RfaH [Vibrio sp. RC341] Length = 165 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKIHLENQNVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + T++ T V+ F+ G +P + I + Q++ + ++ Sbjct: 53 SYMFVRFDFEHGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQMKNLAKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ + V+ GPFA I + D + R + V + + P+ + Sbjct: 112 LPEKGQTIRVARGPFAGIEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 161 >gi|242241150|ref|YP_002989331.1| transcriptional activator RfaH [Dickeya dadantii Ech703] gi|242133207|gb|ACS87509.1| transcriptional acivator RfaH [Dickeya dadantii Ech703] Length = 162 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ +A E + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER---------QFVTCLSPMITLEKIVRGKRTEVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ T+ T V F+ G P+ V IE + + + P + + Sbjct: 55 LFVEFDPERIHTTTVNSTRGVSHFVRFGAMPAIVPSQVIEDLQSHQTEKIIDPDT---PQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+RV +++G F+ I + E +R + + + + L Q K+ Sbjct: 112 PGDRVVITEGVFSGLQAIYAEPNGE-ARSMLLLNLLNKQVRQCLDNRQFRKM 162 >gi|298484134|ref|ZP_07002301.1| transcriptional regulator [Bacteroides sp. D22] gi|299149121|ref|ZP_07042182.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] gi|298269724|gb|EFI11318.1| transcriptional regulator [Bacteroides sp. D22] gi|298512788|gb|EFI36676.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] Length = 192 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + ++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + NVD KS++ V + + G Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174 >gi|308188887|ref|YP_003933018.1| Transcription antitermination protein nusG [Pantoea vagans C9-1] gi|308059397|gb|ADO11569.1| Transcription antitermination protein nusG [Pantoea vagans C9-1] Length = 162 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLER---------QEVHCLSPMIALEKIVRGKRTTVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V + IE + V + P + Sbjct: 51 FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILIDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V +++G F I D E R + + + + + Q KI Sbjct: 110 --PQSGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKI 162 >gi|229816235|ref|ZP_04446545.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM 13280] gi|229808243|gb|EEP44035.1| hypothetical protein COLINT_03285 [Collinsella intestinalis DSM 13280] Length = 170 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 6/162 (3%) Query: 15 EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDK 74 E +A I V + +P V + G+ + FPGYV ++ + Sbjct: 13 EDRAAALIAKIA-----QGAVDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQ 67 Query: 75 VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFFEVGERVCVSD 133 + + P L + + ++ +N + + S G+ V V Sbjct: 68 IREALGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIR 127 Query: 134 GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 GP + +D K V++ +FGR + + V K Sbjct: 128 GPLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169 >gi|300021969|ref|YP_003754580.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299523790|gb|ADJ22259.1| NusG antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 175 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W +V ++ E A ++ EI P R + S FPGY Sbjct: 15 WVVVNAQAHREFVAASNLKK---------QGYEIYAPVIRKTTRHARISRESLTPLFPGY 65 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + D + I T + + G PS + + ++ + + + V + E Sbjct: 66 LFARWTAPDMRWRPILSTVGIRSIVRNGNEPSRLDGAIVDALKAREKDGV-IVRAESQRE 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +G+ V + GPF + + +K R+ V + + R T V + +Q+ Sbjct: 125 IGQIVRFARGPFDGIAAEIVELC-DKDRLVVLMTLLNRPTKVTVLEDQL 172 >gi|260174672|ref|ZP_05761084.1| putative transcriptional regulator [Bacteroides sp. D2] gi|315922935|ref|ZP_07919175.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696810|gb|EFS33645.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 188 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + VD +S++ V + + G Sbjct: 134 APLARGEKVRVVKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173 >gi|254724237|ref|ZP_05186022.1| transcription antitermination protein NusG [Bacillus anthracis str. A1055] Length = 96 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 50/88 (56%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V YS E K ++ R+ G+ + + +P E V ++ G++ +R+ Sbjct: 1 MEKSWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEVEVEMKNGKEKLMKRKV 60 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 FPGYVL++ +MTD ++ +++TP V G Sbjct: 61 FPGYVLVELIMTDDSWYVVRNTPGVTGV 88 >gi|256422616|ref|YP_003123269.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256037524|gb|ACU61068.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 174 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 13/173 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+ +N E+K + I E +P R R E FP Sbjct: 14 KWYVAYTRANFERKVAKDIV---------DQQIEHYLPLRRETRKWSDRLKQIEVPLFPN 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ +K + KV P V+ + P V++ EI+HI ++E Q ++ Sbjct: 65 YIFVKIKLQHKVNIL--GIPGVLSLVSFSGQPVSVSEREIQHIR-KIEERGQDIALEYYY 121 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+RV ++ G F GI+ + R +++ + VE+ +Q+E+I Sbjct: 122 CVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLERI 173 >gi|260170846|ref|ZP_05757258.1| putative transcriptional regulator [Bacteroides sp. D2] gi|315919178|ref|ZP_07915418.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693053|gb|EFS29888.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 192 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKIVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + ++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + NVD KS++ V + + G Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174 >gi|229523219|ref|ZP_04412626.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80] gi|229339582|gb|EEO04597.1| transcriptional activator RfaH [Vibrio cholerae TM 11079-80] Length = 165 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + T++ T V+ F+ G +P + I + Q++ + + Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKNATKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I D + R + V + + P+ + Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161 >gi|299149025|ref|ZP_07042087.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] gi|298513786|gb|EFI37673.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] Length = 198 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDGQMARFRFMLDYSEEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + V KS++ V + + G Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174 >gi|160883751|ref|ZP_02064754.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483] gi|156110836|gb|EDO12581.1| hypothetical protein BACOVA_01723 [Bacteroides ovatus ATCC 8483] Length = 192 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + ++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHVNPKERKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + NVD KS++ V + + G Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174 >gi|15828653|ref|NP_326013.1| transcription antitermination protein NusG [Mycoplasma pulmonis UAB CTIP] gi|14089595|emb|CAC13355.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Mycoplasma pulmonis] Length = 196 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 16/192 (8%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR------- 52 M WY++ N EK+ +E+I ++ L+ ++ I E +S ++ Sbjct: 1 MNKFNWYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDS 60 Query: 53 KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 +++ + GY+ I+ V+T++ + +++T V G +G+ + T +E Sbjct: 61 YKTTKKNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEE 120 Query: 113 AVQRPVSSV------FFEVGERVCVSDGPFASFNGI--VKNVDEEKSRVHVEVVIFGRVT 164 ++ F G V + DGPF + + +K + EK +E+ G+ Sbjct: 121 ETKKEEEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSV 180 Query: 165 PVELAYNQVEKI 176 ++ + ++ I Sbjct: 181 DTQIDHKHLKLI 192 >gi|294809330|ref|ZP_06768040.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|294443422|gb|EFG12179.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 198 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + V KS++ V + + G Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174 >gi|307310231|ref|ZP_07589880.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] gi|306899783|gb|EFN30408.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] Length = 219 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++V++ EK +S+ G+ LV P R GY Sbjct: 52 WFALRVWTGREKIVEKSLDA----MGVRSLVPMRKGPDL---RRRGRVIEGQMMPVIHGY 104 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI--MNQVEAAVQRPVSSVF 122 VL++ + + + VI LG + P ++D+E+ + + + Sbjct: 105 VLVQMMALSEYLAGLLGLEHVIDVLGGCDRPMRLSDNEVSRFNGLARNGNFDWERPVHLV 164 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVEKI 176 GE V ++ GPF V + K R V V + + G PV + ++K+ Sbjct: 165 VRAGEPVWITAGPFCGRKATVVTPSK-KGRGDVVVSIDLMGGEVPVTVPLALLKKL 219 >gi|298387614|ref|ZP_06997166.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298259821|gb|EFI02693.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 192 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 12/177 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + G+++ +P ++ R+ Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 P V + +++ T + +P+ + D ++ ++ + + ++S Sbjct: 75 PMMVFVHVDPRERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE+V V GP G + +VD KS++ V + + G V++ VE I+ Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVHVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 189 >gi|258627093|ref|ZP_05721889.1| transcriptional activator RfaH [Vibrio mimicus VM603] gi|258580611|gb|EEW05564.1| transcriptional activator RfaH [Vibrio mimicus VM603] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + + T++ T V+ F+ G +P + I + Q++ + + Sbjct: 53 SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKGPAKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I + D + R + V + + P+ + Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPLSIENTD 161 >gi|237714660|ref|ZP_04545141.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406525|ref|ZP_06083074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647458|ref|ZP_06725042.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294806943|ref|ZP_06765766.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|229445429|gb|EEO51220.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355228|gb|EEZ04319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637200|gb|EFF55634.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294445830|gb|EFG14474.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 188 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+VCV GP G + VD +S++ V + + G Sbjct: 134 APLARGEKVCVIKGPLTGLVGELVTVDG-RSKIAVRLNMLG 173 >gi|15641005|ref|NP_230636.1| transcriptional activator RfaH [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587350|ref|ZP_01677121.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80] gi|121728134|ref|ZP_01681170.1| transcriptional activator RfaH, putative [Vibrio cholerae V52] gi|147675715|ref|YP_001216462.1| transcriptional activator RfaH [Vibrio cholerae O395] gi|153216032|ref|ZP_01950237.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587] gi|153818608|ref|ZP_01971275.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC 8457] gi|153822702|ref|ZP_01975369.1| transcriptional activator RfaH, putative [Vibrio cholerae B33] gi|153826186|ref|ZP_01978853.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2] gi|153829897|ref|ZP_01982564.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39] gi|183179424|ref|ZP_02957635.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3] gi|227081164|ref|YP_002809715.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2] gi|229505411|ref|ZP_04394921.1| transcriptional activator RfaH [Vibrio cholerae BX 330286] gi|229510919|ref|ZP_04400398.1| transcriptional activator RfaH [Vibrio cholerae B33] gi|229512448|ref|ZP_04401921.1| transcriptional activator RfaH [Vibrio cholerae TMA 21] gi|229518040|ref|ZP_04407484.1| transcriptional activator RfaH [Vibrio cholerae RC9] gi|229529916|ref|ZP_04419306.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)] gi|229608430|ref|YP_002879078.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236] gi|254226222|ref|ZP_04919816.1| transcriptional activator RfaH, putative [Vibrio cholerae V51] gi|254848121|ref|ZP_05237471.1| transcriptional activator RfaH [Vibrio cholerae MO10] gi|255744772|ref|ZP_05418723.1| transcriptional activator RfaH [Vibrio cholera CIRS 101] gi|262151261|ref|ZP_06028397.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1] gi|262167175|ref|ZP_06034888.1| transcriptional activator RfaH [Vibrio cholerae RC27] gi|297578597|ref|ZP_06940525.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298498895|ref|ZP_07008702.1| transcriptional activator RfaH [Vibrio cholerae MAK 757] gi|9655451|gb|AAF94151.1| transcriptional activator RfaH, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548433|gb|EAX58493.1| transcriptional activator RfaH, putative [Vibrio cholerae 2740-80] gi|121629602|gb|EAX62024.1| transcriptional activator RfaH, putative [Vibrio cholerae V52] gi|124114482|gb|EAY33302.1| transcriptional activator RfaH, putative [Vibrio cholerae 1587] gi|125621258|gb|EAZ49598.1| transcriptional activator RfaH, putative [Vibrio cholerae V51] gi|126510834|gb|EAZ73428.1| transcriptional activator RfaH, putative [Vibrio cholerae NCTC 8457] gi|126519783|gb|EAZ77006.1| transcriptional activator RfaH, putative [Vibrio cholerae B33] gi|146317598|gb|ABQ22137.1| putative transcriptional activator RfaH [Vibrio cholerae O395] gi|148874640|gb|EDL72775.1| putative transcriptional activator RfaH [Vibrio cholerae 623-39] gi|149740046|gb|EDM54215.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-2] gi|183012835|gb|EDT88135.1| transcriptional activator RfaH, putative [Vibrio cholerae MZO-3] gi|227009052|gb|ACP05264.1| putative transcriptional activator RfaH [Vibrio cholerae M66-2] gi|227012807|gb|ACP09017.1| putative transcriptional activator RfaH [Vibrio cholerae O395] gi|229333690|gb|EEN99176.1| hypothetical protein VCG_003020 [Vibrio cholerae 12129(1)] gi|229344755|gb|EEO09729.1| transcriptional activator RfaH [Vibrio cholerae RC9] gi|229350529|gb|EEO15476.1| transcriptional activator RfaH [Vibrio cholerae TMA 21] gi|229350884|gb|EEO15825.1| transcriptional activator RfaH [Vibrio cholerae B33] gi|229357634|gb|EEO22551.1| transcriptional activator RfaH [Vibrio cholerae BX 330286] gi|229371085|gb|ACQ61508.1| transcriptional activator RfaH [Vibrio cholerae MJ-1236] gi|254843826|gb|EET22240.1| transcriptional activator RfaH [Vibrio cholerae MO10] gi|255737803|gb|EET93197.1| transcriptional activator RfaH [Vibrio cholera CIRS 101] gi|262024396|gb|EEY43084.1| transcriptional activator RfaH [Vibrio cholerae RC27] gi|262030952|gb|EEY49580.1| transcriptional activator RfaH [Vibrio cholerae INDRE 91/1] gi|297536191|gb|EFH75024.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543228|gb|EFH79278.1| transcriptional activator RfaH [Vibrio cholerae MAK 757] gi|327483711|gb|AEA78118.1| Transcriptional activator RfaH [Vibrio cholerae LMA3894-4] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + T++ T V+ F+ G +P + I + Q++ + + Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHATKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I D + R + V + + P+ + Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161 >gi|160882250|ref|ZP_02063253.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483] gi|237715183|ref|ZP_04545664.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408864|ref|ZP_06085409.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294810721|ref|ZP_06769369.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|156112339|gb|EDO14084.1| hypothetical protein BACOVA_00196 [Bacteroides ovatus ATCC 8483] gi|229445016|gb|EEO50807.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353075|gb|EEZ02170.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294442054|gb|EFG10873.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 198 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + V KS++ V + + G Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174 >gi|254291864|ref|ZP_04962647.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226] gi|262190284|ref|ZP_06048553.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93] gi|150422224|gb|EDN14188.1| transcriptional activator RfaH, putative [Vibrio cholerae AM-19226] gi|262033832|gb|EEY52303.1| transcriptional activator RfaH [Vibrio cholerae CT 5369-93] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + T++ T V+ F+ G +P + I + Q++ + + Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLKHTTKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I D + R + V + + P+ + Sbjct: 112 LPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKMISQQVPMSIENTD 161 >gi|29347135|ref|NP_810638.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339034|gb|AAO76832.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 192 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 12/177 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + G+++ +P ++ R+ Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQEFHQWSDRRKLVTSVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 P V + +++ T + +P+ + D ++ ++ + + ++S Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE+V V GP G + NVD KS++ V + + G V++ VE I+ Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 189 >gi|304398184|ref|ZP_07380059.1| NusG antitermination factor [Pantoea sp. aB] gi|304354470|gb|EFM18842.1| NusG antitermination factor [Pantoea sp. aB] Length = 162 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLER---------QEVHCLSPMIALEKIVRGKRTTVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V + IE + V + P + Sbjct: 51 FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPSAVIEALETDVPQILLDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V +++G F I D E R + + + + + Q K+ Sbjct: 110 --PQSGDEVVITEGTFEGLRAIFAEPDGET-RSILLLNLLNKQVMRSVDNKQFRKL 162 >gi|298387543|ref|ZP_06997095.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298259750|gb|EFI02622.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 192 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ IP ++ + R+ Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLDKMGIEN-----FIPVQQELHQWSDRRKMITSVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-VSS 120 P V + +++ T + +P+ + D ++ ++ + + ++S Sbjct: 75 PMMVFVHVDPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSAESVSMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP G + NVD KS++ V + + G V++ VE I Sbjct: 135 SPLARGEQVRVIKGPLTGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188 >gi|223934754|ref|ZP_03626674.1| NusG antitermination factor [bacterium Ellin514] gi|223896709|gb|EEF63150.1| NusG antitermination factor [bacterium Ellin514] Length = 205 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 10/172 (5%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 P WY V+ E A ++ V E PS R + V F Sbjct: 31 EPAWYCVRSKPKHEHIAAANLSKL--------QVVETFNPSLRSRKATRRGPVWMTESLF 82 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ + ++++ +K T V + G V IE + A + S V Sbjct: 83 PNYIFARF-PFEQMFDEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEV 141 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G++V ++ G+V + RV V + + G+ + VEL N V Sbjct: 142 PTA-GDQVTITSRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192 >gi|260175490|ref|ZP_05761902.1| putative transcriptional regulator [Bacteroides sp. D2] gi|315923722|ref|ZP_07919962.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697597|gb|EFS34432.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 186 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + V KS++ V + + G Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174 >gi|183597388|ref|ZP_02958881.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827] gi|188023415|gb|EDU61455.1| hypothetical protein PROSTU_00645 [Providencia stuartii ATCC 25827] Length = 163 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W+++ I + +++ P + V +G++ + Sbjct: 1 MEK-WHLLYCKRGQ-------IDRAIEHLNRQNVI--CMTPMTEIEKVVRGKRTKVQEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ +K + TI+ T V F+ G +P+ V D IE + + P + Sbjct: 51 FPNYLFVKFDHNEIHTTTIQSTRGVSHFVRFGLHPAIVPDEIIELLQQAPLGHLVDPETP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G FA I + E SR + + I + L Q +K+ Sbjct: 111 TH---GDNVLITEGIFAGIQAIYDEPNGE-SRSILLLNILNKNVSKVLDNTQFKKL 162 >gi|295105769|emb|CBL03312.1| Transcription antiterminator [Gordonibacter pamelaeae 7-10-1-b] Length = 532 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 4/149 (2%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+ QV + E + +S L+ E +P + +G + R FPGY Sbjct: 2 WYVAQVQAGRESATRDLCLRLVSSDVLE----ECFMPEYETMWRVRGEWKLARRLLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +++ + P I LG EN + + S + Sbjct: 58 LFFVTGDAEELNKELLRVPLPIRLLGNEENSFFPLTKKEQDWFLSFMDGEHIVRMSEGYI 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRV 153 G++V V+ GP F G ++ +D K R Sbjct: 118 TGDKVTVTRGPLMGFEGDIRKIDRHKRRA 146 >gi|237716030|ref|ZP_04546511.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237722185|ref|ZP_04552666.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262407644|ref|ZP_06084192.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294808414|ref|ZP_06767167.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|229443677|gb|EEO49468.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229447995|gb|EEO53786.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262354452|gb|EEZ03544.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294444342|gb|EFG13056.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 192 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + ++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHVNPKERKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + NVD KS++ V + + G Sbjct: 135 SPLARGEKVRVVKGPLTGLVGELVNVDG-KSKIAVRLNMLG 174 >gi|323483116|ref|ZP_08088508.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum WAL-14163] gi|323403536|gb|EGA95842.1| hypothetical protein HMPREF9474_00257 [Clostridium symbiosum WAL-14163] Length = 249 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 24/190 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV E+K E I ++S ++ E IP + V +GR E FPGY Sbjct: 50 WYVIQVQGGQEEKTAELIRSQVSAHVME----ECFIPKKERVKKFRGRWQRVEEILFPGY 105 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA----------- 113 V ++++ +K+ ++ L G E E ++ + Sbjct: 106 VFTVTDKPEELFLELKNVLRLTKILQDGAFYFIPLSKEEETLIQSIGDNCHITRISRVQV 165 Query: 114 ---------VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + ++ E G + + DGP + G + + K V++ G Sbjct: 166 KKKIEPAAKTEVVFNNRMLESGREIMIIDGPLKNQEGRIVKYNLHKREATVKLRFMGNEM 225 Query: 165 PVELAYNQVE 174 + LA VE Sbjct: 226 ELRLAIELVE 235 >gi|291615750|ref|YP_003518492.1| RfaH [Pantoea ananatis LMG 20103] gi|291150780|gb|ADD75364.1| RfaH [Pantoea ananatis LMG 20103] gi|327396015|dbj|BAK13437.1| transcriptional activator RfaH [Pantoea ananatis AJ13355] Length = 182 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G++ Sbjct: 21 ME-SWYLLYCKRGQLLRAKEHLER---------QEVKCLSPMIAMEKIVRGKRTTVSEPL 70 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V I+ + V + P + Sbjct: 71 FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGTTPATVPALVIDALQTDVPQTLLDPET- 129 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V +++G F I D E +R + + + + + Q K Sbjct: 130 --PQNGDEVIITEGTFEGLRAIFSEPDGE-ARSILLLNLLNKQVVRSVDNRQFRK 181 >gi|29347066|ref|NP_810569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338964|gb|AAO76763.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 192 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 12/177 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + G+++ +P ++ + R+ Sbjct: 24 SKRWYVALVRMHHEKKVSEHLDK----MGIEN-----FVPVQQELHQWSDRRKLVTSVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSS 120 P V + A +++ T + +P+ + D ++ ++ + + ++S Sbjct: 75 PMMVFVHADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE+V V GP G + NVD +S++ V + + G V++ VE I+ Sbjct: 135 SPLARGEKVRVIKGPLTGLVGELVNVDG-RSKIAVRLNMLGCAC-VDMPVGYVEPIM 189 >gi|110597105|ref|ZP_01385394.1| transcription antitermination protein NusG:KOW [Chlorobium ferrooxidans DSM 13031] gi|110341296|gb|EAT59761.1| transcription antitermination protein NusG:KOW [Chlorobium ferrooxidans DSM 13031] Length = 194 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 61/165 (36%), Gaps = 18/165 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY V V S CEK+ + +P RK F G Sbjct: 8 RWYAVYVRSRCEKQVYRMLAE---------KQITTFLPLLETWKQWSDRKKKVSEPLFRG 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + M + +T V+ F+G G+ PS + + +I+ + V + Sbjct: 59 YVFVNIDMRHDHLPVL-ETEGVVKFIGIGKVPSVIAEKDIDWLRKLVREPEAIGRTVDSI 117 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160 VG++V V GPF F G+V E V VEV IF Sbjct: 118 PVGQKVKVLAGPFKDFEGVVLKHGRETRLVVFFDSIMQGVEVSIF 162 >gi|121606024|ref|YP_983353.1| NusG antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120594993|gb|ABM38432.1| transcription antitermination protein nusG [Polaromonas naphthalenivorans CJ2] Length = 182 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 12/171 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+ E ++ L + +P + + FP Y Sbjct: 21 WYLTYARPRLE---------TVALQNLQQQGFDAYLPLYKSLKKTDAGIKAIFVPMFPRY 71 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-FF 123 V ++ + ++ T V + G + + ++ I + V+ + Sbjct: 72 VFVRPSHPAQSIAPVRSTRGVAQLVQFGNELATIRADALDAIRQFEQQRNAADVAELSSL 131 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G V + + G+VK+V RV V + GR V + ++Q++ Sbjct: 132 RPGHAVRFHNPALSGLEGLVKSVSS--LRVTVLLEFMGREQLVSVEHHQLK 180 >gi|300714828|ref|YP_003739631.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661] gi|299060664|emb|CAX57771.1| Transcriptional acivator RfaH [Erwinia billingiae Eb661] Length = 162 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ + Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLER---------QSVHCLSPMIALEKLVRGKRTQVDEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V I + + P Sbjct: 51 FPNYLFIEFDPEAIHTTTISATRGVSHFVRFGSLPASVPHDVIMALQTDTPITMVDPDV- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+RV ++ G F I D E +R + + + + L Q K+ Sbjct: 110 --PQPGDRVLITCGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQITRSLDNKQFHKL 162 >gi|119358362|ref|YP_913006.1| transcription antitermination protein nusG [Chlorobium phaeobacteroides DSM 266] gi|119355711|gb|ABL66582.1| transcription antitermination protein nusG [Chlorobium phaeobacteroides DSM 266] Length = 180 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 20/166 (12%) Query: 4 RWYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY V V S EKK + + L +P + RK F Sbjct: 8 HWYAVYVRSRHEKKVHQLFLEKEL----------TSFLPLLETMRQWSDRKKKVYEPLFR 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + M + DT VI F+G G+ PS + +IE + V + + Sbjct: 58 GYVFVNIAMRRDHIRVL-DTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDA 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVH--------VEVVIF 160 G+ V V GPF F G+V E V VE+ IF Sbjct: 117 LPPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISIF 162 >gi|237727954|ref|ZP_04558435.1| transcriptional activator RfaH [Citrobacter sp. 30_2] gi|226910403|gb|EEH96321.1| transcriptional activator RfaH [Citrobacter sp. 30_2] Length = 162 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKIVRGKRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V I + + P + + Sbjct: 55 MFVEFDPEVIHTTTINATRGVSHFVRFGATPATVPSPVIHQLSIYKPEGIVDPQT---PQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + KI Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTGFRKI 162 >gi|238798045|ref|ZP_04641534.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969] gi|238718148|gb|EEQ09975.1| Transcriptional activator rfaH [Yersinia mollaretii ATCC 43969] Length = 162 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ +A E + + P + + +G++ FP Sbjct: 2 KQWHLLYCKRGQLLRAKEHLERQAVN---------CWTPLVIIEKIVRGKRAEVTEPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ D TI T V F+ G P+ + I + + + P + Sbjct: 53 NYLFVEFNAEDIHTTTISATRGVSHFVRFGAQPAVIPAIVITEMQSHTADKIIAPEVPL- 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G FA I D E +R + + + L Q EK Sbjct: 112 --PGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVIQSLENRQFEK 161 >gi|157368505|ref|YP_001476494.1| transcriptional activator RfaH [Serratia proteamaculans 568] gi|157320269|gb|ABV39366.1| transcriptional acivator RfaH [Serratia proteamaculans 568] Length = 162 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G+++ Sbjct: 1 ME-SWYLLYCKRGQLLRAQEHLERQEVN---------CLSPIITLEKIVRGKRIAVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + IE + P + Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSTPTTIPQKVIEELQTHTCETYVDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V + DG F I D E +R + + + + + Q +K+ Sbjct: 110 --PQPGDSVLIVDGVFEGLQAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162 >gi|194334318|ref|YP_002016178.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271] gi|194312136|gb|ACF46531.1| NusG antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 172 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 11/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V V S EKK L +P RK F GY Sbjct: 9 WYAVYVRSRFEKKV---------HLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V ++ + DT V+ F+G G S + D +IE I R Sbjct: 60 VFVRIHYRQDHPFVL-DTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLP 118 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V V GPF G+V+ D +S++ V + V + + + Sbjct: 119 PGKQVKVIAGPFVGLEGVVRK-DGRESKLVVYFESIMQGIEVTINAEYLSPL 169 >gi|224369771|ref|YP_002603935.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium autotrophicum HRM2] gi|223692488|gb|ACN15771.1| transcriptional antiterminator (SH3-like protein) [Desulfobacterium autotrophicum HRM2] Length = 174 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 11/174 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY + S E I E+ +P + S RK RK+ + F Sbjct: 4 EKSWYTLLTKSRFENVVFNDIQK---------KSIEVFLPKIKKRSQRKDRKLMIDVPLF 54 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ + + + ++ T + LG P PV + IE + + ++ Sbjct: 55 PGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTI 114 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + GERV V GPF+ G K RV +++ G+ VE+ +E Sbjct: 115 NTLQKGERVLVVRGPFSGVKGEFLRHKG-KDRVIIKIETLGQFAGVEIDREDLE 167 >gi|84516255|ref|ZP_01003615.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53] gi|84509951|gb|EAQ06408.1| transcriptional activator RfaH [Loktanella vestfoldensis SKA53] Length = 171 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 3/152 (1%) Query: 26 LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85 ++ L+ P+E R + V + FPGYV ++ + T + Sbjct: 22 MALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAASGGVRAVNSTRGI 81 Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + G+ P+ V I + + P G+ V + DGPFA F V Sbjct: 82 TKLVTLGQGPAIVPAGLIAALRIRFAPPDITPAPQFDQ--GDWVRILDGPFAEFVAQV-E 138 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 RV++ + + GR T V + +++ V Sbjct: 139 ATPAAERVYLLIDLMGRATRVAVDARSLKREV 170 >gi|170026148|ref|YP_001722653.1| transcriptional activator RfaH [Yersinia pseudotuberculosis YPIII] gi|169752682|gb|ACA70200.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis YPIII] Length = 161 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ +A E + + P + + +G+++ FP Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + T+ T V F+ G P+ + + I + + P Sbjct: 53 NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V + DG FA I D E +R + + + L Q EK Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161 >gi|283834601|ref|ZP_06354342.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220] gi|291069730|gb|EFE07839.1| transcriptional activator RfaH [Citrobacter youngae ATCC 29220] Length = 162 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + IP + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLIPMITLEKMVRGKRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V I + + P + Sbjct: 55 MFVEFDPEVIHTTTINATRGVSHFVRFGAAPATVPSPVIHQLSIYKPEGIVDPET---PH 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + KI Sbjct: 112 PGDSVIITEGAFEGLQAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTGFRKI 162 >gi|51594618|ref|YP_068809.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP 32953] gi|153948031|ref|YP_001399276.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP 31758] gi|186893619|ref|YP_001870731.1| transcriptional activator RfaH [Yersinia pseudotuberculosis PB1/+] gi|51587900|emb|CAH19503.1| putative regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|152959526|gb|ABS46987.1| transcriptional activator RfaH [Yersinia pseudotuberculosis IP 31758] gi|186696645|gb|ACC87274.1| transcriptional acivator RfaH [Yersinia pseudotuberculosis PB1/+] Length = 162 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ +A E + + P + + +G+++ FP Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + T+ T V F+ G P+ + + I + + P Sbjct: 53 NYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V + DG FA I D E +R + + + L Q EK Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161 >gi|150396868|ref|YP_001327335.1| NusG antitermination factor [Sinorhizobium medicae WSM419] gi|150028383|gb|ABR60500.1| NusG antitermination factor [Sinorhizobium medicae WSM419] Length = 219 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 16/178 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV--SVRKGRKVNSERRFFP 62 W+ ++V++ EK +S+ R +P + R Sbjct: 52 WFALRVWTGREKTVEKSLDIMAVR---------SLVPMRKGPDLRRRGRVIEGQMMPVIH 102 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI--MNQVEAAVQRPVSS 120 GYVL++ + + + VI LG E P ++D E+ + + Sbjct: 103 GYVLVQMMALSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERPVD 162 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVEKI 176 + GE V ++ GPF V + K R V V + G PV + ++K+ Sbjct: 163 LVVRAGEPVLITAGPFCDRRATVITPSK-KGRGDVVVSIDFMGGEVPVTVPLALLKKL 219 >gi|153806452|ref|ZP_01959120.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185] gi|149131129|gb|EDM22335.1| hypothetical protein BACCAC_00716 [Bacteroides caccae ATCC 43185] Length = 190 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL++ G+++ +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVAE----RLNKMGIEN-----FVPVQQELHQWSDRRKMVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSS 120 P V + ++ T + +P+ + D ++ + + ++S Sbjct: 75 PMMVFVHVDAKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSKYVISMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP G + VD KS++ V + + G Sbjct: 135 APLARGEKVRVIKGPLTGLVGELVTVDG-KSKIAVRLNMLG 174 >gi|254283967|ref|ZP_04958935.1| Transcription termination factor nusG domain protein [gamma proteobacterium NOR51-B] gi|219680170|gb|EED36519.1| Transcription termination factor nusG domain protein [gamma proteobacterium NOR51-B] Length = 214 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 13/158 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V E A + P ++ ++G+ FPG Sbjct: 22 RWYVVASKPRSEGVAKSQLER---------QGFVTCAPRIKLRKRQRGKWQQVIEPLFPG 72 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ + + I+ T IG + G PV ++ ++ +++ E+ S F Sbjct: 73 YLFVALRLGVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPD---ASEAVF 129 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G+ V GPF +GI + + + R V + + G Sbjct: 130 QPGQAVRFEAGPFEGLSGIF-KMPKGQDRAEVLITLLG 166 >gi|145220255|ref|YP_001130964.1| transcription antitermination protein nusG [Prosthecochloris vibrioformis DSM 265] gi|145206419|gb|ABP37462.1| transcription antitermination protein nusG [Chlorobium phaeovibrioides DSM 265] Length = 169 Score = 77.4 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 10/158 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P WY V V S EKK + + +P + RK F Sbjct: 7 PHWYAVYVRSRYEKKVHQWLEE---------KELTSFLPLLETMRQWSDRKKKVYEPLFR 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + M + + +T V+ F+G G NPS +++ +IE + V + Sbjct: 58 GYVFVNIDM-KHEHVKVLETEGVVKFIGIGRNPSVISERDIEWLRTLVREPDALHQTVST 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 VG +V V GPF GIV E + I Sbjct: 117 MPVGRKVRVLAGPFKDLEGIVVKQGREDRMIIFFDSIM 154 >gi|326202988|ref|ZP_08192855.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782] gi|325987065|gb|EGD47894.1| NGN domain-containing protein [Clostridium papyrosolvens DSM 2782] Length = 176 Score = 77.4 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 11/181 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WYI+ V S E++ + + D+ IP + G + Sbjct: 1 MGMYWYILFVKSGREQRVQQYMNKIA-----DNETANPFIPLHEFLIKISGVVKRELKPL 55 Query: 61 FPGYVLIKAVMTDKVYHT-----IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 FPGYV +++VM + I + ++ L + V +SE + ++N Sbjct: 56 FPGYVFVESVMPGDEFLKKLNSRIHSSSDIVKVLKYSDTEIEVRESEKQMLLNLCNKRHC 115 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S G+R+ V++GP I++ ++ K + +E+ G V +A VEK Sbjct: 116 IESSR-GIIRGDRIYVTNGPLKGRESIIRKINRHKKQALIEMDFMGDKRIVNVALEIVEK 174 Query: 176 I 176 + Sbjct: 175 V 175 >gi|300713325|ref|YP_003739364.1| transcriptional activator [Erwinia billingiae Eb661] gi|299060396|emb|CAX53646.1| Transcriptional activator [Erwinia billingiae Eb661] Length = 184 Score = 77.4 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 11/166 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FFP 62 WY++ EK+A +++ + +P V SV FP Sbjct: 15 NWYVLITKYAQEKRAQDNLI---------NQGVNCWLPRITVHSVDARGGGGGSEVLAFP 65 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ TIK T + G + P+ + +E+ + ++EA S Sbjct: 66 RYLFAHFDAEIIHTTTIKATRGISGIVSFNNTPAIMDGAELAALRMRMEAGAALAGRSPD 125 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 E GE V + +G F I D K R + + +FGR+T ++ Sbjct: 126 PEHGETVTIENGAFDGLEAIWHQPDGAK-RAILLINLFGRLTEAKI 170 >gi|332181491|gb|AEE17179.1| NGN domain-containing protein [Treponema brennaborense DSM 12168] Length = 218 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 4/174 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +Y VQV + E+ + SI +L + + P R++ R+G +VN FP Sbjct: 35 MNYYAVQVRTLKEEAYIASISRQLEDTEIKIQF---LFPKRRLIIRRQGEQVNELMPLFP 91 Query: 63 GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV I+ ++ ++Y+ + FL +N ++ ++ + + + S V Sbjct: 92 GYVFIETEKLSTELYNVARSAKYFSRFLPNNQNICSLSGKDLAVLKHFIGFGAVAESSKV 151 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 +F+ +R+ V+ GP G + VD K R V++ ++LA++ + K Sbjct: 152 YFDENDRIVVTSGPLHGLEGSIVKVDRRKHRAKVKLDFANECFLLDLAFDIIGK 205 >gi|227327314|ref|ZP_03831338.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 162 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLER---------QDVNCVSPMITLDKIVRGKRTEVCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + I+ + + + P Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPIQGITDP--- 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+ V ++DG F+ I D E +R + + + + + + K Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161 >gi|86144030|ref|ZP_01062368.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217] gi|85829490|gb|EAQ47954.1| NusG antitermination factor [Leeuwenhoekiella blandensis MED217] Length = 158 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 15/173 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V EKK ++ L ++ P+ V V RK + F Sbjct: 1 MNWYVLYVKPQSEKKVASALEK---------LGVKVFCPTLEEVRVWSDRKKKIQVPLFK 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV + + + + P V+ +L P+ V D EI I + + V Sbjct: 52 SYVFVC--LPNTERQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRT 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G V ++ G F GIV+ V + R+ + + G VE + K Sbjct: 110 YTPGTEVKIAAGHFKGQKGIVQEV--GRKRLKMVIKSLG--VIVEARLKDLVK 158 >gi|322834842|ref|YP_004214869.1| transcriptional acivator RfaH [Rahnella sp. Y9602] gi|321170043|gb|ADW75742.1| transcriptional acivator RfaH [Rahnella sp. Y9602] Length = 179 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +GR+ Sbjct: 18 ME-SWYLLYCKRGQLLRAKEHLER---------QNVNCLTPMITLEKLVRGRRTAVSEPL 67 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G + V I+ +M ++ P + Sbjct: 68 FPNYMFIEFDPERIHTTTINATRGVSHFIRFGAKLATVQPDVIKQLMEPPTIEIRDPDT- 126 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V ++DG FA I D E + + + + + + +KI Sbjct: 127 --PYEGDQVVITDGIFAGIEAIYTEPDGEARSL-LMLNLINQPVRQSIENTHFQKI 179 >gi|152972825|ref|YP_001337971.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892438|ref|YP_002917172.1| transcriptional activator RfaH [Klebsiella pneumoniae NTUH-K2044] gi|262040850|ref|ZP_06014076.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997403|ref|ZP_08302765.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3] gi|150957674|gb|ABR79704.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544754|dbj|BAH61105.1| transcriptional activator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041739|gb|EEW42784.1| transcriptional activator RfaH [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539090|gb|EGF65127.1| transcriptional activator RfaH [Klebsiella sp. MS 92-3] Length = 162 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + +P+ + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I+ TI T V F+ G P+ V + I + + P + Sbjct: 55 LFIEFDPEVIHTTTISATRGVNNFVRFGALPAIVPSAVIHQLSIYKPEGITDPET---PH 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++DG F I D E +R + + + + + +KI Sbjct: 112 EGDSVLITDGAFEGLEAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162 >gi|22124375|ref|NP_667798.1| transcriptional activator RfaH [Yersinia pestis KIM 10] gi|45443029|ref|NP_994568.1| transcriptional activator RfaH [Yersinia pestis biovar Microtus str. 91001] gi|108809431|ref|YP_653347.1| transcriptional activator RfaH [Yersinia pestis Antiqua] gi|108810360|ref|YP_646127.1| transcriptional activator RfaH [Yersinia pestis Nepal516] gi|145600640|ref|YP_001164716.1| transcriptional activator RfaH [Yersinia pestis Pestoides F] gi|153997171|ref|ZP_02022304.1| DNA-binding transcriptional antiterminator [Yersinia pestis CA88-4125] gi|162421310|ref|YP_001606389.1| transcriptional activator RfaH [Yersinia pestis Angola] gi|165926271|ref|ZP_02222103.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. F1991016] gi|165939165|ref|ZP_02227716.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. IP275] gi|166012151|ref|ZP_02233049.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. E1979001] gi|166213613|ref|ZP_02239648.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. B42003004] gi|167398803|ref|ZP_02304327.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420836|ref|ZP_02312589.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426298|ref|ZP_02318051.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468668|ref|ZP_02333372.1| transcriptional activator RfaH [Yersinia pestis FV-1] gi|218930774|ref|YP_002348649.1| transcriptional activator RfaH [Yersinia pestis CO92] gi|229839454|ref|ZP_04459613.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896688|ref|ZP_04511854.1| DNA-binding transcriptional antiterminator [Yersinia pestis Pestoides A] gi|229900018|ref|ZP_04515155.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar Orientalis str. India 195] gi|229900535|ref|ZP_04515664.1| DNA-binding transcriptional antiterminator [Yersinia pestis Nepal516] gi|270488890|ref|ZP_06205964.1| transcriptional activator RfaH [Yersinia pestis KIM D27] gi|294505437|ref|YP_003569499.1| transcriptional activator RfaH [Yersinia pestis Z176003] gi|21957154|gb|AAM84049.1|AE013646_9 transcriptional activator [Yersinia pestis KIM 10] gi|45437896|gb|AAS63445.1| putative regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|108774008|gb|ABG16527.1| regulatory protein [Yersinia pestis Nepal516] gi|108781344|gb|ABG15402.1| putative regulatory protein [Yersinia pestis Antiqua] gi|115349385|emb|CAL22357.1| putative regulatory protein [Yersinia pestis CO92] gi|145212336|gb|ABP41743.1| regulatory protein [Yersinia pestis Pestoides F] gi|149289477|gb|EDM39555.1| DNA-binding transcriptional antiterminator [Yersinia pestis CA88-4125] gi|162354125|gb|ABX88073.1| transcriptional activator RfaH [Yersinia pestis Angola] gi|165912938|gb|EDR31564.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. IP275] gi|165921795|gb|EDR38992.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. F1991016] gi|165988952|gb|EDR41253.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. E1979001] gi|166205286|gb|EDR49766.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. B42003004] gi|166960965|gb|EDR56986.1| transcriptional activator RfaH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051307|gb|EDR62715.1| transcriptional activator RfaH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054817|gb|EDR64621.1| transcriptional activator RfaH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682554|gb|EEO78641.1| DNA-binding transcriptional antiterminator [Yersinia pestis Nepal516] gi|229686798|gb|EEO78877.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar Orientalis str. India 195] gi|229695820|gb|EEO85867.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700331|gb|EEO88364.1| DNA-binding transcriptional antiterminator [Yersinia pestis Pestoides A] gi|262363502|gb|ACY60223.1| transcriptional activator RfaH [Yersinia pestis D106004] gi|262367431|gb|ACY63988.1| transcriptional activator RfaH [Yersinia pestis D182038] gi|270337394|gb|EFA48171.1| transcriptional activator RfaH [Yersinia pestis KIM D27] gi|294355896|gb|ADE66237.1| transcriptional activator RfaH [Yersinia pestis Z176003] gi|320013633|gb|ADV97204.1| DNA-binding transcriptional antiterminator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 162 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ +A E + + P + + +G+++ FP Sbjct: 2 KSWYLLYCKRGQILRAKEHLERQTVN---------CWTPIVAIEKIVRGKRIEVIEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + T+ T F+ G P+ + + I + + P Sbjct: 53 NYLFAEFDPENIHTTTVSATRGGSHFVRFGTQPAVIPATVIADMQAHAVDKIIAPEV--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G+ V + DG FA I D E +R + + + L Q EK Sbjct: 110 PKPGDIVKIIDGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIKHSLDNRQFEK 161 >gi|253690409|ref|YP_003019599.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756987|gb|ACT15063.1| transcriptional acivator RfaH [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 162 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + I+ + + + P Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPLQVITDP--- 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+ V ++DG F+ I D E +R + + + + + + K Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161 >gi|153806198|ref|ZP_01958866.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185] gi|149130875|gb|EDM22081.1| hypothetical protein BACCAC_00453 [Bacteroides caccae ATCC 43185] Length = 197 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP + G + V KS++ V + + G V++ VE I Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTV-GSKSKIAVRLNMLGCAC-VDMPIGYVEPI 188 >gi|258622004|ref|ZP_05717033.1| transcriptional activator RfaH [Vibrio mimicus VM573] gi|258585757|gb|EEW10477.1| transcriptional activator RfaH [Vibrio mimicus VM573] Length = 165 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQDVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + + T++ T V+ F+ G +P + I + Q++ + Sbjct: 53 SYMFVRFDFEEGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCEQLEGSAKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I + D + R + V + + P+ + Sbjct: 112 LPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 161 >gi|21673456|ref|NP_661521.1| NusG/RfaH family transcriptional regulator [Chlorobium tepidum TLS] gi|21646560|gb|AAM71863.1| transcriptional regulator, NusG/RfaH family [Chlorobium tepidum TLS] Length = 200 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V V S EKK + + +P + RK E GY Sbjct: 11 WYAVYVRSRYEKKVHQYLLE---------KGLSSFLPLIETLRQWSDRKKRVEEPLIRGY 61 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + + H + +T V+ F+G G+ PS +++ +I+ + + + Sbjct: 62 VFVNINYHKEHVHVL-ETDGVVKFIGIGKTPSVISERDIDWLKRLAHEPDAIGETVISIP 120 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG++V V GPF G+VK + + R+ V + + ++ + I Sbjct: 121 VGKKVRVLAGPFKDMEGVVKK-EGREERLLVYFDSIMQGVEITISPELLAPI 171 >gi|237713545|ref|ZP_04544026.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407330|ref|ZP_06083878.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446527|gb|EEO52318.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354138|gb|EEZ03230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 198 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDETVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP + G + V KS++ V + + G Sbjct: 135 TPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 174 >gi|206890959|ref|YP_002248310.1| transcription termination factor NusG domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742897|gb|ACI21954.1| transcription termination factor NusG domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 169 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 10/171 (5%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY + V S E K + RL+++G++ +P+ + K RK + FPG Sbjct: 7 NWYCIYVKSRHEFKVFD----RLTKAGIE-----AFLPAVERLRRWKDRKKLIKFPLFPG 57 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ + + ++ + TP V+ F+ T E + + + + Sbjct: 58 YLFVCIEKSYELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGREIDPYPYL 117 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+RV + GP A GI+K E++ + + I R V++ ++VE Sbjct: 118 KEGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167 >gi|227114329|ref|ZP_03827985.1| transcriptional activator RfaH [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 162 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + I+ + + + P Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPVQGIIDP--- 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+ V ++DG F+ I D E +R + + + + + + K Sbjct: 108 LTPQPGDSVVITDGIFSGLQAIYTEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161 >gi|317053793|ref|YP_004118927.1| NusG antitermination factor [Pantoea sp. At-9b] gi|316952898|gb|ADU72371.1| NusG antitermination factor [Pantoea sp. At-9b] Length = 170 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 15/170 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERR 59 M WY+ Q EK+A + + P V ++ G + +E+ Sbjct: 1 ME-NWYVAQTKYAQEKRAQQQLL---------SQGVTCLFPVFSEVRLQNGGIRRIAEQP 50 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 FP Y+ ++ IK T V + G PS V DS I + + P++ Sbjct: 51 LFPNYIFVRFDPEVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQ---GWERAPLN 107 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + G+RV + DG F + D K R + + + R V + Sbjct: 108 TDAPVHGDRVVIRDGAFEGLEAVWYEPDGLK-RAMLLLTLMNREVRVPVE 156 >gi|323691443|ref|ZP_08105715.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum WAL-14673] gi|323504489|gb|EGB20279.1| hypothetical protein HMPREF9475_00577 [Clostridium symbiosum WAL-14673] Length = 213 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++QV E+K E I +L+ D + E IP + V KGR E FPGY Sbjct: 20 WYVIQVQGGQEEKTAELIKKQLTL--CDDSLRECFIPKKERVKKFKGRWQQVEELLFPGY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + +++Y +K ++ L G + E + + S Sbjct: 78 VFADSGNAEELYRRLKQVGRLTKVLQDGNFLFLSLSEDEEQRIKAIGDCRHVTRVSKVRV 137 Query: 125 VG-------------ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 VG + V V +GP G V V+ K V V++ GR+ V+L Sbjct: 138 VGGEYSGRADGIDRGKNVVVREGPLKGLEGYVTKVNLHKREVTVQMPFAGRMVDVKLGIE 197 Query: 172 QV-EK 175 V EK Sbjct: 198 LVDEK 202 >gi|291326731|ref|ZP_06125611.2| transcriptional activator RfaH [Providencia rettgeri DSM 1131] gi|291313040|gb|EFE53493.1| transcriptional activator RfaH [Providencia rettgeri DSM 1131] Length = 169 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ I + ++V P + V +G++V + Sbjct: 6 MEK-WYLLYCKRGQ-------IERAMEHLNRQNVV--CMTPMTEMEKVVRGKRVTVQEAL 55 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ +K + TI+ T V F+ G+ P+ V + IE + + P Sbjct: 56 FPNYLFVKFDHNEIHTTTIQSTRGVSHFIRFGQFPTEVPEEIIELLQQTPVSYSVAPDI- 114 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G++V +++G FA I + E R + + I + P + Q +K Sbjct: 115 --PKHGDQVTITEGIFAGVQAIFDEPNGE-YRSILLLNILNKSVPKVVDNTQFKK 166 >gi|157376165|ref|YP_001474765.1| NusG antitermination factor [Shewanella sediminis HAW-EB3] gi|157318539|gb|ABV37637.1| NusG antitermination factor [Shewanella sediminis HAW-EB3] Length = 179 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 23/185 (12%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E +A++++ E +P+ V +KG+ + FP Sbjct: 2 KAWYLLYCKPRGESRALQNL---------TIQNIETYLPTIAVKKEQKGQVSVVKTSLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA---------- 112 Y+ IK + I T V+ +G E +P+ D I+ I Q Sbjct: 53 SYLFIKFDPKEVSVSRINSTRGVVQVVGCKELMTPIDDGIIDAIRQQEYELNSMTQGSTD 112 Query: 113 ---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + GE+V +++G F++ GI + +K R HV I G + V++ Sbjct: 113 IGSSSNEEFEPKVINPGEKVRLTEGVFSTLEGIFQEKSGDK-RCHVLFEIMGEMKSVKIP 171 Query: 170 YNQVE 174 + V+ Sbjct: 172 MSIVK 176 >gi|295095157|emb|CBK84247.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 163 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + +++GR+ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQL--SVYQQPEDITDPETPY 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + K+ Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEVLQSVKNTDFRKV 163 >gi|296105280|ref|YP_003615426.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059739|gb|ADF64477.1| transcriptional activator RfaH [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 163 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + +++G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + V + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGAHPATVPSTVIHQL--SVYQQPEDITDPETPY 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + K+ Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKQVLQSVKNTDFRKV 163 >gi|29346006|ref|NP_809509.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568593|ref|ZP_04846004.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29337900|gb|AAO75703.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842666|gb|EES70746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 192 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + + E +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVSEYLNK---------VGIENFVPVQKEIHQWSDRRKLVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A +++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETVCMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP G + NVD KS++ V + + G V++ VE I Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188 >gi|329755796|gb|AEC04347.1| NusG antitermination factor [Chitinophaga sancti] Length = 174 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y EKK + L ++ +P V R +E FP Sbjct: 14 KWYVLYTYPLFEKKIGRQLA-------LIDII--HYLPVRTEVRKWSDRLKRTEVPLFPN 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ +K + +K P V+ F+ PV++ +I I + + SV+ Sbjct: 65 YIFVKTNLLNKTPIL--SIPGVVRFVSIEGKAIPVSEDDINKIRQIEASRQDVEIESVYN 122 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRVTPVELAYNQVEKI 176 G+++ + +G F+ G + + +R+ V + + + VE++ +EK+ Sbjct: 123 -TGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKL 173 >gi|78187519|ref|YP_375562.1| NusG antitermination factor [Chlorobium luteolum DSM 273] gi|78167421|gb|ABB24519.1| transcription antitermination protein nusG [Chlorobium luteolum DSM 273] Length = 170 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 13/170 (7%) Query: 3 PRWYIVQVYSNCEKKAVE-SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 P WY V V S EKK + + L+ +P V RK F Sbjct: 7 PHWYAVYVRSRYEKKVHQWMLEKELNS----------FLPLLETVRQWSDRKKKVYEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV ++ M + + +T V+ F+G G NPS ++ +IE + V + Sbjct: 57 RGYVFVQIDM-KHEHVKVLETEGVVKFIGIGRNPSVISPRDIEWLKTLVREPDALHQTVS 115 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 G++V V GPF G+V + + R+ V + V ++ + Sbjct: 116 SIPYGKKVRVLAGPFKDLEGVVVK-EGREERLVVFFESIMQGIEVSISPD 164 >gi|304310243|ref|YP_003809841.1| Transcriptional activator RfaH [gamma proteobacterium HdN1] gi|301795976|emb|CBL44177.1| Transcriptional activator RfaH [gamma proteobacterium HdN1] Length = 157 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 15/167 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++Q + E A ++ P +V + G+ + FP Sbjct: 1 MAWYLMQTRPHQETLAATNLLR---------QGYGCYQPIHQVEKLIAGKLCMKDEALFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ ++ + + TI+ T V + G PV++ I + + + + Sbjct: 52 GYLFVEIA-AQQSWCTIRSTYGVRSLVCFGGKALPVSELLISQLRARC----ETEQAQCR 106 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 F G+ V V GPFA N + + E RV V + + V +EL Sbjct: 107 FTKGQSVEVKKGPFAGLNAVFQCKKAE-DRVIVLIRLLQSVQAIELP 152 >gi|195941210|ref|ZP_03086592.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4024] Length = 163 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + +++GR+ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGRRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGAHPARVPSSVIHQL--SVYQQPDDITDPETPY 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + K+ Sbjct: 113 AGDSVVITEGAFEGLQAIFAEPDGE-ARSMLLLNLLNKEVLQSVKNTDFRKV 163 >gi|99034374|ref|ZP_01314395.1| hypothetical protein Wendoof_01000801 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 235 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKVNSERRFFP 62 +WYI++V SNCE+K + I R G++ E+ IP E + V K +K+ + R+ FP Sbjct: 100 KWYILRVASNCEEKVRQHILENSMRLGVNDYFKEVFIPYEELSEVELKSKKIATRRKCFP 159 Query: 63 GYVLIKAVMTDKVYHTIKDTP---KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV + + D+V + I + P KV GFL G P + D EI + N + A + Sbjct: 160 GYVFLYVNLCDEVLNFINNIPKSLKVYGFLKNGNIPKVILDDEIHSMCNALYNAQETKKL 219 Query: 120 SVFFEVGERVCVSDG 134 +E GE+V ++DG Sbjct: 220 GYGYEKGEKVKINDG 234 >gi|298388205|ref|ZP_06997737.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298259035|gb|EFI01927.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 192 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E + + E +P ++ + R+ E Sbjct: 24 SKRWYVALVRMHHEKKVSEYLNK---------VGIENFVPVQKEIHQWSDRRKLVESVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A +++ T + +P+ + D ++ ++ + + S Sbjct: 75 PMMVFVHADPKERMEVLNFTTVSRYMVMRGESSPAVIPDDQMARFRFMLDYSDETICMNS 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP G + NVD KS++ V + + G V++ VE I Sbjct: 135 SPLARGEKVQVIKGPLQGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPIGYVEPI 188 >gi|304413123|ref|ZP_07394596.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1] gi|304283966|gb|EFL92359.1| Transcription antiterminator [Candidatus Regiella insecticola LSR1] Length = 163 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 13/175 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ + + ++ L+ P + + +GR+V FP Sbjct: 2 KAWYLLYCKR------AQLLR---AQEHLERQGVVCLTPIVAIKKMWRGRRVTLHEPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + TIK + V F+ G P + I+ I + + +V Sbjct: 53 NYLFTEFNPENIHTTTIKASRGVSHFVRFGLYPVIIPQMVIDDIKSHTIKTISDSTVAVS 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V V++G F+ I D E+ R + + I L EK+V Sbjct: 113 ---GDTVRVTEGIFSGLQAIYTEPDGER-RSMILLNILNSQVSKSLDNRHFEKVV 163 >gi|290473588|ref|YP_003466458.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin [Xenorhabdus bovienii SS-2004] gi|289172891|emb|CBJ79662.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and haemolysin [Xenorhabdus bovienii SS-2004] Length = 162 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ +A+ + P+ ++ + +G++ FP Y Sbjct: 4 WYLLYCKRGQISRAIGHLER---------QDVICLTPTAKIEKIVRGKRTTVTEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + TI T V F+ P+ V + I+ +M+ E P + + Sbjct: 55 LFVNFDPEIIHTTTINSTRGVNHFIRFSTYPAVVPQTLIDELMSATEQEYIAPETPI--- 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + I + L Q KI Sbjct: 112 TGDTVLITEGIFEGIQAIYNEPDGET-RSILLLNILNKEVSKILDNKQFIKI 162 >gi|153808243|ref|ZP_01960911.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185] gi|149129146|gb|EDM20362.1| hypothetical protein BACCAC_02531 [Bacteroides caccae ATCC 43185] Length = 197 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 12/176 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RLS+ G+D +P ++ + R+ + Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDS-----FVPVQQQIHQWSDRRKLVDTVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + +++ T + P+ + D ++ ++ + + Sbjct: 75 PMMVFVHVTPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMND 134 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP + G + V +S++ V + + G V++ VE I Sbjct: 135 SPLARGEKVRVIKGPLSGLVGELVTV-GGRSKIAVRLNMLGCAC-VDMPIGYVEPI 188 >gi|218550914|ref|YP_002384705.1| transcriptional activator RfaH [Escherichia fergusonii ATCC 35469] gi|218358455|emb|CAQ91102.1| DNA-binding transcriptional antiterminator [Escherichia fergusonii ATCC 35469] gi|324111070|gb|EGC05057.1| transcriptional activator RfaH [Escherichia fergusonii B253] gi|325499185|gb|EGC97044.1| transcriptional activator RfaH [Escherichia fergusonii ECD227] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSIYKPEGIVDPGT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + KI Sbjct: 112 PGDQVIITEGAFEGFQAIFSEPDGE-ARSMLLLNLINKEVKHSVKNTEFRKI 162 >gi|206576966|ref|YP_002241095.1| transcriptional activator RfaH [Klebsiella pneumoniae 342] gi|288937740|ref|YP_003441799.1| transcriptional acivator RfaH [Klebsiella variicola At-22] gi|290513135|ref|ZP_06552497.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55] gi|206566024|gb|ACI07800.1| transcriptional activator RfaH [Klebsiella pneumoniae 342] gi|288892449|gb|ADC60767.1| transcriptional acivator RfaH [Klebsiella variicola At-22] gi|289774346|gb|EFD82352.1| transcriptional activator RfaH [Klebsiella sp. 1_1_55] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + +P+ + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLMPTIALEKIIRGKRTMVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I+ TI T V F+ G P+ V + I + + P + Sbjct: 55 LFIEFDPEVIHTTTISATRGVNNFVRFGALPAVVPSAVIHQLSIYKPEGITDPET---PH 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++DG F I D E +R + + + + + +KI Sbjct: 112 EGDSVLITDGAFEGLQAIFTEPDGE-ARSMLLLNLLNKQVLQSVKNTDFQKI 162 >gi|254509311|ref|ZP_05121402.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16] gi|219547769|gb|EED24803.1| transcriptional activator RfaH [Vibrio parahaemolyticus 16] Length = 165 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 12/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ + + ++ L++ E P ++ + +G++ + FP Sbjct: 2 KQWYLLYCKRS---------EQQRAKMHLENQGVECYYPEIQIEKMVRGKRQVKKEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ + + + TI+ T V+ F+ G + ++ + ++E + + + Sbjct: 53 SYIFARFDVEQGPTFTTIRSTRGVVDFVRRGA-LPQILQGDLIVTLKEIETEQEGLMQAG 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E G+ V V+ G FA I + D E+ R + V + + V + + Sbjct: 112 LPEKGDTVNVATGQFAGMEAIYQEPDGER-RSILLVNMLSKQVEVTVDNKDL 162 >gi|189347084|ref|YP_001943613.1| NusG antitermination factor [Chlorobium limicola DSM 245] gi|189341231|gb|ACD90634.1| NusG antitermination factor [Chlorobium limicola DSM 245] Length = 184 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 5 WYIVQVYSNCEKKAVES-IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V V S EKK + + +P RK F G Sbjct: 10 WYAVYVRSRYEKKVHRMFLEKEVE----------AFLPLLETWRQWSDRKKKVSEPLFRG 59 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + M + + DT V+ F+G G+ PS ++ +I+ I V Sbjct: 60 YVFVNIDM-KAEHIKVLDTDGVVKFIGIGKTPSVISSRDIDWIKKLVREPDAVRRIVASL 118 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 G++V V+ GPF G+V + +SR+ V Sbjct: 119 PPGQKVMVTAGPFKGLEGVVVK-EGRESRLVVYFD 152 >gi|71894376|ref|YP_278484.1| transcription antitermination protein [Mycoplasma synoviae 53] gi|71851164|gb|AAZ43773.1| transcription antitermination protein [Mycoplasma synoviae 53] Length = 202 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 20/193 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT----------EITIPSERVVSVRKGR- 52 RWY++ + E VE++ R+ ++ +PS + K + Sbjct: 7 RWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTELNKKQK 66 Query: 53 ---KVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 + FPGY+ +KA M D V++ I++T +V G +G+G T I Sbjct: 67 GLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQNQIRKS 126 Query: 110 VEAAVQRPVSSVFFE------VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 +E + + VG+ V ++DG + +++ + E + + F + Sbjct: 127 LEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFEDFNKK 186 Query: 164 TPVELAYNQVEKI 176 ++ + + +I Sbjct: 187 VEFKINLDWLTRI 199 >gi|198242878|ref|YP_002217904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937394|gb|ACH74727.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ + FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + KI Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNLLNKEVKQSVKNTGFRKI 162 >gi|209694405|ref|YP_002262333.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238] gi|208008356|emb|CAQ78511.1| transcriptional activator RfaH [Aliivibrio salmonicida LFI1238] Length = 165 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 11/172 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KLWYLLYCKRG---------DQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFP 52 Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ T + TI+ T + F+ G P+ + I + E + Sbjct: 53 CYMFVRFDFTVGPTFTTIRSTRGISDFVRFGSQPTVLNGDLIYSLKQLGENLHHKKTIEC 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 E G++V + +GP+ + I K D E R + + + + +++ V Sbjct: 113 LPESGQKVDIIEGPYTGIDAIYKEADGE-MRSILLITLINKKVEIKIENINV 163 >gi|307321395|ref|ZP_07600793.1| NusG antitermination factor [Sinorhizobium meliloti AK83] gi|306892940|gb|EFN23728.1| NusG antitermination factor [Sinorhizobium meliloti AK83] Length = 221 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 9/176 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W ++Q + EK L ++G++ LV P R ER Sbjct: 53 KSWIVLQTMTGREKIV----ENILGQAGVEALVPTKKAPDV---RRRGRIIEGQERPVMR 105 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 GYV++ AV++ + ++ V+G +G E P + I + A V Sbjct: 106 GYVMVHAVLSPAALNGLRRVEHVVGIVGGAERPWCADAQSVNMIKALSKKANAADEEKVL 165 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE-LAYNQVEKI 176 FE+GERV +GPF G+V VD EK VEV+I G PV + + K+ Sbjct: 166 PFELGERVVFREGPFYLLGGVVIAVDGEKFDARVEVMILGGHVPVHNVPLEILAKV 221 >gi|220926439|ref|YP_002501741.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060] gi|219951046|gb|ACL61438.1| hypothetical protein Mnod_6676 [Methylobacterium nodulans ORS 2060] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 16/176 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++V+ + +A++++ +P V R+GR + F Sbjct: 7 WHLVRTAPSMMGRALDTLKE---------QGIPTVVPRTVAVGHREGRPYLRRAQMFHRT 57 Query: 65 VLI----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V + A + KV T + P ++ ++ + + +R + Sbjct: 58 VFVGVEGAADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAIGITEKRKPAG 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+RV V GPFASF +V+ V R+ V V IFGR TP E + V I Sbjct: 118 IAA--GDRVVVQAGPFASFPAMVEEVLP-NERLKVAVQIFGRATPFECGHADVRPI 170 >gi|126734253|ref|ZP_01750000.1| transcriptional antitermination protein, putative [Roseobacter sp. CCS2] gi|126717119|gb|EBA13983.1| transcriptional antitermination protein, putative [Roseobacter sp. CCS2] Length = 172 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 10/171 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++Q+ N G L+R+ L +P V + + FPGY Sbjct: 10 WFVLQLKPN---------GLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGY 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + +T V + + ++I + + + Sbjct: 61 LFFSVTARQINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVADLQ 120 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G++V V +GPFA + V + D R+ + V + GR T V +A +EK Sbjct: 121 TGDQVGVVNGPFAGWMAKVVSADTP-DRIQLLVDVMGRETAVNIAGRDLEK 170 >gi|16767247|ref|NP_462862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415831|ref|YP_152906.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182445|ref|YP_218862.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617101|ref|YP_001591065.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553387|ref|ZP_02347136.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993917|ref|ZP_02575010.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233912|ref|ZP_02658970.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238430|ref|ZP_02663488.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244668|ref|ZP_02669600.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263131|ref|ZP_02685104.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467606|ref|ZP_02701443.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822651|ref|ZP_02834651.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442676|ref|YP_002043206.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451271|ref|YP_002047987.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471723|ref|ZP_03077707.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736748|ref|YP_002116903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249659|ref|YP_002148903.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261907|ref|ZP_03161981.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364761|ref|YP_002144398.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389120|ref|ZP_03215732.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930337|ref|ZP_03221314.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354464|ref|YP_002228265.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859177|ref|YP_002245828.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585792|ref|YP_002639591.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912981|ref|ZP_04656818.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6960227|gb|AAF33417.1| 88% identity to E. coli transcriptional activator RFAH) (SW:P26614) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422542|gb|AAL22821.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130088|gb|AAV79594.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130078|gb|AAX67781.1| transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366465|gb|ABX70233.1| hypothetical protein SPAB_04934 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401339|gb|ACF61561.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409575|gb|ACF69794.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458087|gb|EDX46926.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712250|gb|ACF91471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629956|gb|EDX48616.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096238|emb|CAR61835.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213362|gb|ACH50759.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240162|gb|EDY22782.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288714|gb|EDY28089.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199606218|gb|EDZ04763.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320741|gb|EDZ05943.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274245|emb|CAR39264.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322157|gb|EDZ09996.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328150|gb|EDZ14914.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332101|gb|EDZ18865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336504|gb|EDZ23268.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340955|gb|EDZ27719.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348234|gb|EDZ34865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710980|emb|CAR35348.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470320|gb|ACN48150.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249100|emb|CBG26961.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996261|gb|ACY91146.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160492|emb|CBW20022.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915096|dbj|BAJ39070.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225494|gb|EFX50551.1| Transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613053|gb|EFY10004.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617359|gb|EFY14259.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625649|gb|EFY22471.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627072|gb|EFY23865.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631212|gb|EFY27975.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638245|gb|EFY34944.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642819|gb|EFY39406.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646939|gb|EFY43441.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650327|gb|EFY46740.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656383|gb|EFY52677.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657608|gb|EFY53878.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322666019|gb|EFY62200.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666758|gb|EFY62935.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670999|gb|EFY67129.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679294|gb|EFY75346.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681698|gb|EFY77725.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685975|gb|EFY81963.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716939|gb|EFZ08510.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132325|gb|ADX19755.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192078|gb|EFZ77312.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196467|gb|EFZ81617.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203781|gb|EFZ88802.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205344|gb|EFZ90318.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210713|gb|EFZ95589.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215881|gb|EGA00614.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221374|gb|EGA05792.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227608|gb|EGA11764.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231793|gb|EGA15904.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236208|gb|EGA20285.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239555|gb|EGA23603.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244349|gb|EGA28357.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249554|gb|EGA33466.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250354|gb|EGA34240.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256561|gb|EGA40292.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259741|gb|EGA43374.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265149|gb|EGA48647.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268422|gb|EGA51894.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326629597|gb|EGE35940.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 162 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ + FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + KI Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 162 >gi|313676303|ref|YP_004054299.1| nusg antitermination factor [Marivirga tractuosa DSM 4126] gi|312943001|gb|ADR22191.1| NusG antitermination factor [Marivirga tractuosa DSM 4126] Length = 174 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 14/172 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ + S EKK + + E+ P++ V+ RK + FP Y Sbjct: 4 WFAIYTKSRTEKKVADRL---------ADQHIEVYCPTQTVMRQWSDRKKKVKVAVFPSY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V +K D I TP V+ F+ + + EIE I N + + VS F+ Sbjct: 55 VFVKFQ-DDNERLRILQTPGVVNFVRHLGADAKIRPKEIEAIQNLLGEYEE--VSVEPFQ 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG++V + G G V + E+K RV V + G E++ +V+K+ Sbjct: 112 VGDKVQIQHGGMKGQEGKV--ILEQKDRVIVYIESLGLSLKAEVSKAKVKKV 161 >gi|161505515|ref|YP_001572627.1| transcriptional activator RfaH [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866862|gb|ABX23485.1| hypothetical protein SARI_03680 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 186 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ + FP Y Sbjct: 28 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V P + Sbjct: 79 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + KI Sbjct: 136 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 186 >gi|119469076|ref|ZP_01612060.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7] gi|119447328|gb|EAW28596.1| transcriptional activator RfaH [Alteromonadales bacterium TW-7] Length = 161 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 15/174 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY+V E++A ++ ++ E P + K R+ + Sbjct: 1 ME-SWYLVICKPRQEERAKANL---------NNQGIEAFYPILTTEKLVKSRRTVKQVAL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ + + + +K+T + GF+ G N V + IEH+ N V+ + Sbjct: 51 FPNYLFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHTSNTVESQLPK 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V VS+ F + + I K D + R + + + + + + +E Sbjct: 111 ----QGDAVSVSNHSFKNIDAIYKEPDGD-MRSILLINLLNKQVEMSVDNTDIE 159 >gi|159162766|pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg) N-Terminal (Ngn) Domain From Thermus Thermophilus Length = 119 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 6/109 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK-GRKVNSERRFFPG 63 WY V E+KA ++ R+ GL + ++ IP+E VV +R+ G+K ++ FPG Sbjct: 4 WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 63 Query: 64 YVLIKAVMTDKV-----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107 Y+ I+ + D+ + ++ TP + GF+G G P P++ E+ HI+ Sbjct: 64 YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHIL 112 >gi|254039053|ref|ZP_04873104.1| transcriptional activator [Escherichia sp. 1_1_43] gi|226838744|gb|EEH70772.1| transcriptional activator [Escherichia sp. 1_1_43] Length = 162 Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVNNTEFRKL 162 >gi|309379174|emb|CBX22305.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 47 Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 36/46 (78%) Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +++GPFA FNG+V V+ E++++ V V IFGR TPVEL + QVEKI Sbjct: 1 MNEGPFADFNGVVDEVNYERNKLRVSVQIFGRETPVELEFGQVEKI 46 >gi|157144469|ref|YP_001451788.1| transcriptional activator RfaH [Citrobacter koseri ATCC BAA-895] gi|157081674|gb|ABV11352.1| hypothetical protein CKO_00183 [Citrobacter koseri ATCC BAA-895] Length = 162 Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + V P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPATVPSNVIHQLSVYKPEGVVDPET---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + K+ Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKEVKQSVKNTAFRKV 162 >gi|262402668|ref|ZP_06079229.1| transcriptional activator RfaH [Vibrio sp. RC586] gi|262351450|gb|EEZ00583.1| transcriptional activator RfaH [Vibrio sp. RC586] Length = 165 Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 12/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVKEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ T + T++ T V+ F+ G +P + I + Q++ + VS Sbjct: 53 SYMFVRFDFETGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIFQ-LKQLDCQQLKGVSKQ 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G+ V V+ G FA I + D + R + V + + + + Sbjct: 112 LPEKGQVVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVSMSIENTD 161 >gi|256424177|ref|YP_003124830.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256039085|gb|ACU62629.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 170 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 11/159 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY + EKK + RLS + +P R++ RK E FP Y Sbjct: 8 WYALYTMPRHEKK----LHTRLSELNVTS-----FLPMTRMLRTWHDRKKYVEMPLFPSY 58 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + + Y+ + +T + ++ TG S +++ I +I E + +S+ +F Sbjct: 59 IFVYLNNIEHYYNVL-NTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFP 117 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 G+ + +S GP A F+ V + ++ V V + R Sbjct: 118 PGKELLISSGPLAGFSCEVVSYKNS-EKILVRVSLLQRS 155 >gi|320088389|emb|CBY98149.1| Transcription antitermination protein nusG [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 186 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ + FP Y Sbjct: 28 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTSVSEPLFPNY 78 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V P + Sbjct: 79 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 135 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + KI Sbjct: 136 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 186 >gi|50119164|ref|YP_048331.1| transcriptional activator RfaH [Pectobacterium atrosepticum SCRI1043] gi|49609690|emb|CAG73123.1| transcriptional activator [Pectobacterium atrosepticum SCRI1043] Length = 162 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLER---------QEVTCVSPMIALDKIVRGKRTEVCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + I+ + + + P Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSNFVRFGALPATIPQQVIDELSLRPMQVIIDP--- 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+ V ++DG F+ I D E +R + + + + + + K Sbjct: 108 LTPQSGDSVVITDGIFSGLQAIYSEPDGE-ARSMLLLNMLNKQVRQSIDNREFRK 161 >gi|126667149|ref|ZP_01738123.1| transcriptional activator RfaH [Marinobacter sp. ELB17] gi|126628305|gb|EAZ98928.1| transcriptional activator RfaH [Marinobacter sp. ELB17] Length = 143 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 5/146 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 L + P V +R G++ F GY+ I + V+ ++ T VI Sbjct: 1 MHLQNQDIPCFYPKVMVEKLRSGKRSCKLEALFSGYIFINLSQLNPVWSKLRSTRGVIRI 60 Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 +G G P PV D I+H+ + + S+ + G+ V V++GPFA I + D Sbjct: 61 VGFGGKPLPVKDEVIDHLRASL----DKVASAGGIKSGDDVDVAEGPFAGMRAIFQCYDG 116 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVE 174 + R V + + + + + ++ Sbjct: 117 D-ERAIVLIEFMQKSQRISVPISSLK 141 >gi|157704379|gb|ABV68878.1| NusG [Candidatus Liberibacter asiaticus] Length = 49 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 49/49 (100%), Positives = 49/49 (100%) Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV Sbjct: 1 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 49 >gi|16762157|ref|NP_457774.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143646|ref|NP_806988.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022004|ref|ZP_03336451.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162212|ref|ZP_03347922.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417412|ref|ZP_03350554.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427336|ref|ZP_03360086.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583371|ref|ZP_03365197.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213616391|ref|ZP_03372217.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646466|ref|ZP_03376519.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854780|ref|ZP_03383020.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289803898|ref|ZP_06534527.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828717|ref|ZP_06546512.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512544|pir||AE0915 transcription activator STY3582 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504460|emb|CAD07915.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139281|gb|AAO70848.1| transcriptional activator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 162 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVS---------CLTPMITLEKMVRGKRTFVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V S I + V P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPET---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + KI Sbjct: 112 PGDSVIITEGAFEGLKAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKI 162 >gi|146313585|ref|YP_001178659.1| transcriptional activator RfaH [Enterobacter sp. 638] gi|145320461|gb|ABP62608.1| transcriptional acivator RfaH [Enterobacter sp. 638] Length = 163 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + +++G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPVITLEKIQRGKRTMVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G P+ V + I + V Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAQPATVPSTVIHQL--SVYKQPDDITDPDTPF 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + +A K+ Sbjct: 113 CGDDVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQVLQSVANTAFRKV 163 >gi|325970070|ref|YP_004246261.1| NusG antitermination factor [Spirochaeta sp. Buddy] gi|324025308|gb|ADY12067.1| NusG antitermination factor [Spirochaeta sp. Buddy] Length = 182 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 5/174 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +Y + + E+K + R + +I IP R++ RKG+K+ S+ P Sbjct: 1 MNYYFIACRTGGEEKVRAHLNKFFIRERGEMHEVDIFIPMRRMIDRRKGKKIMSDHPILP 60 Query: 63 GYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY+L+ + +TD V + P GFL + + + ++ + S Sbjct: 61 GYLLLSSEEPLTDFVMDIHR-IPGCYGFLHNLDKTIELKGPDHQYAAWIMHNKGTIKPSK 119 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQ 172 V + GE + V +GP F G V +VD +RV VE R + + + Q Sbjct: 120 VVYTQGEPIKVVEGPLQDFMGTVISVDYRHNRVMVEFQFAEVIRKVSMPVEFIQ 173 >gi|94967916|ref|YP_589964.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] gi|94549966|gb|ABF39890.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] Length = 182 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 13/175 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W+ VQ EK+ E + + V + G F Sbjct: 11 ELHWFAVQTRHRHEKRVAERLR--------QSEIETFLPIHRAVHRWKNGINAEVNLPLF 62 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGY+ + + P VI + +P+P+ D+EI + ++ A + Sbjct: 63 PGYLF--TRLRGSQRIPLLREPGVIAIAASSNSPTPIGDNEIAQL--RLVAESVKAEPHP 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F +G++V V GP GI+ E RV V V I R V+++ ++E + Sbjct: 119 FLAIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIEPV 172 >gi|256424285|ref|YP_003124938.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256039193|gb|ACU62737.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 174 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 17/175 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY++ Y EKK + L ++ +P + V R E FP Sbjct: 14 KWYVLYTYPLFEKKIGRQLA-------LIDII--HYLPVKTEVRKWSDRLKRMEVPLFPN 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y+ +K + +K P V+ F+ +++ +I I ++ + SV+ Sbjct: 65 YIFVKTNLLNKTPIL--GIPGVVRFVSVEGRAIAISEDDINKIRQIEQSRQDVEIESVYN 122 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRVTPVELAYNQVEKI 176 G+++ + +G F+ G + + +R+ V + + + VE++ +EKI Sbjct: 123 -TGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKI 173 >gi|261343102|ref|ZP_05970960.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC 35316] gi|288314668|gb|EFC53606.1| transcriptional activator RfaH [Enterobacter cancerogenus ATCC 35316] Length = 163 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + +++G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQSVN---------CLTPVITLEKMQRGKRALVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + V + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGASPATVPSTVIHQL--SVYQQPEGITDPETPY 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E +R + + + + + K+ Sbjct: 113 AGDSVVITEGAFEGLQAIFSEPDGE-ARSMLLLNLLNKQVLQSVKNTDFRKV 163 >gi|259906910|ref|YP_002647266.1| transcriptional activator RfaH [Erwinia pyrifoliae Ep1/96] gi|224962532|emb|CAX53987.1| transcriptional activator [Erwinia pyrifoliae Ep1/96] gi|283476703|emb|CAY72532.1| Transcriptional activator RfaH [Erwinia pyrifoliae DSM 12163] gi|310766158|gb|ADP11108.1| transcriptional activator RfaH [Erwinia sp. Ejp617] Length = 166 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 14/164 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G+ Sbjct: 1 ME-SWYLLYCKRGQLLRAQEHLERQAV---------HCLSPMVALEKIVRGKPTQVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ V I + Sbjct: 51 FPNYLFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPQGVINALQ---VGPALPLDDG 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + G+ V +++G F I D E +R + + + + Sbjct: 108 ELPQPGDTVMITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150 >gi|170769857|ref|ZP_02904310.1| transcriptional activator RfaH [Escherichia albertii TW07627] gi|170121295|gb|EDS90226.1| transcriptional activator RfaH [Escherichia albertii TW07627] Length = 162 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGPSPAIVPSAVIHQLSIYKPEDIVDPST---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|238899141|ref|YP_002924823.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466901|gb|ACQ68675.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 162 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ +A E + + P V +GR++ E FP Sbjct: 2 KSWYLLYCKRGQVFRAQEHLERQKVS---------FLTPLVTVEKCLRGRRIQVEEPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I IK T V F+ G + V D + I + Sbjct: 53 NYLFIHFDPEMIHTTCIKATRGVRDFVRFGNQLAVVPDIVVTQIQQRTFDKSVDFRI--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V ++DGPF I D E R + + + + +Q +K Sbjct: 110 PTPGDLVSITDGPFVGLQAIYSQPDGE-MRSILLMNLLHQQVSKSFDNHQFQK 161 >gi|256421399|ref|YP_003122052.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256036307|gb|ACU59851.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 185 Score = 73.9 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 16/164 (9%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M + WY V EKK +++ E P RV RK E Sbjct: 1 MEQKTHTWYAVYTKPRWEKKVADALVR---------KQIETYCPINRVTHQWSDRKKIVE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 F YV ++ + +++T ++ F+ P+ + D E+E I + Sbjct: 52 EPLFKSYVFVRI--PEDKKTLVRETSGIVNFVYWLGKPASIPDHEVELIKRFLREYQDVQ 109 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V + + + ++ GP +G V K+ V + G Sbjct: 110 VERFPIQEDDLIRITAGPLMHQHGRVVE--AGKNTVKAVLYSMG 151 >gi|270264322|ref|ZP_06192589.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041971|gb|EFA15068.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 162 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + V +G+++ Sbjct: 1 ME-SWYLLYCKRGQLLRAQEHLVRQEVN---------CLSPIITLEKVVRGKRIAVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + IE + P + Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVSHFVRFGSLPTTIPQKVIEELQTHTCETYFDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V + DG F I D E +R + + + + + Q +K+ Sbjct: 110 --PQPGDTVLIVDGMFEGLKAIYTEPDGE-ARSMLLLNLINKQVSQSVDNRQFQKL 162 >gi|149003856|ref|ZP_01828684.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS69] gi|147758190|gb|EDK65193.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS69] Length = 103 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 71 MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV-SSVFFEVGERV 129 MTD+ + +++TP V GF+G+ N S T + I + + + Q E+G+ V Sbjct: 1 MTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEQEIRDILVSMGQTVQEFDFDVEIGQTV 60 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + DG FA + G + +D ++V + + +FG T E+ NQ+ Sbjct: 61 RIIDGAFADYTGKITEID--NNKVKMIISMFGNDTVAEVNLNQI 102 >gi|283787486|ref|YP_003367351.1| transcriptional activator [Citrobacter rodentium ICC168] gi|282950940|emb|CBG90617.1| transcriptional activator [Citrobacter rodentium ICC168] Length = 162 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMITLEKMVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPATVPSAVIHQLSVYKPEGIVDPET---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V +++G F I D E R + + + + + K+ Sbjct: 112 PGDSVIITEGAFEGLQAIFTEPDGET-RSMLLLNLLNKEVKQSVKNTGFRKL 162 >gi|238759597|ref|ZP_04620758.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236] gi|238702140|gb|EEP94696.1| Transcriptional activator rfaH [Yersinia aldovae ATCC 35236] Length = 162 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQAVN---------CWTPIATIEKIVRGKRIKTTEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + I + + + P V Sbjct: 53 NYLFVEFDSEHIHTTTISATRGVSHFVRFGAQPAVIPAIVITDMQSHAADKIIAPEVPV- 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G FA I D E +R + + + L Q EK Sbjct: 112 --TGDIVTITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQIMQSLDNRQFEK 161 >gi|292559253|gb|ADE32254.1| transcription antitermination protein NusG [Streptococcus suis GZ1] Length = 172 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++Q YS E K E++ R + + + IP++ V + G E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQTVQVEKNGEVKEVEENRFP 66 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 GYVL++ VMTD+ + +++TP V + + + Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTVSWVHTVTVQNQLHFWKKKFVKSWCLWDK 119 >gi|238763685|ref|ZP_04624645.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638] gi|238698163|gb|EEP90920.1| Transcriptional activator rfaH [Yersinia kristensenii ATCC 33638] Length = 162 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G++ FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIARGKRTEMTEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + I + + + P Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVITEMQSHTADKIIDPGM--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G F+ + I D E +R + + + L Q EK Sbjct: 110 PTPGDVVTITEGIFSGLHAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161 >gi|313672417|ref|YP_004050528.1| nusg antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312939173|gb|ADR18365.1| NusG antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 164 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E + + L+ +GL+ + P + + K FP Sbjct: 1 MNWYLIYTKVKKE----DFLEQLLTEAGLE-----VLNPKIKKTKNVRNMKKEVIEPLFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ +KA + I+ T + +G V EI + S Sbjct: 52 CYIFVKADLN-IHLRIIRYTQGIRRLVGGSN--PTVVPIEIIDTIKSKMVDGFIDTKSEE 108 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F+ G+ + + DGPF F GI + + K RV + + + + + +EK+ Sbjct: 109 FKKGDTILIKDGPFKDFIGIFQEELDSKGRVSILLKTLALQPRITVDKDMIEKL 162 >gi|24115136|ref|NP_709646.1| transcriptional activator RfaH [Shigella flexneri 2a str. 301] gi|30064863|ref|NP_839034.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T] gi|110807468|ref|YP_690988.1| transcriptional activator RfaH [Shigella flexneri 5 str. 8401] gi|24054408|gb|AAN45353.1| transcriptional activator [Shigella flexneri 2a str. 301] gi|30043123|gb|AAP18845.1| transcriptional activator [Shigella flexneri 2a str. 2457T] gi|110617016|gb|ABF05683.1| transcriptional activator [Shigella flexneri 5 str. 8401] gi|281603235|gb|ADA76219.1| Transcriptional activator rfaH [Shigella flexneri 2002017] gi|313647116|gb|EFS11571.1| transcriptional activator RfaH [Shigella flexneri 2a str. 2457T] Length = 162 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---PPY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|329298149|ref|ZP_08255485.1| transcriptional activator RfaH [Plautia stali symbiont] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G++ Sbjct: 1 ME-SWYLLYCKRGQLLRAKEHLERQEVN---------CLSPMIALEKIVRGKRTTVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P+ V IE + + P + Sbjct: 51 FPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGAMPATVPYEVIEALQTDAPQILLDPET- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V ++D F I D E R + + + + + Q K+ Sbjct: 110 --PQVGDEVLITDSTFEGLRAIFAEPDGET-RSILRLNLLNKQVMRSVDNKQFRKV 162 >gi|320179812|gb|EFW54759.1| Transcriptional activator RfaH [Shigella boydii ATCC 9905] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ I T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTIISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|323974428|gb|EGB69556.1| transcriptional activator RfaH [Escherichia coli TW10509] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKNIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|15804432|ref|NP_290472.1| transcriptional activator RfaH [Escherichia coli O157:H7 EDL933] gi|15834024|ref|NP_312797.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. Sakai] gi|16131688|ref|NP_418284.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K-12 substr. MG1655] gi|82546193|ref|YP_410140.1| transcriptional activator RfaH [Shigella boydii Sb227] gi|82778980|ref|YP_405329.1| transcriptional activator RfaH [Shigella dysenteriae Sd197] gi|89110180|ref|AP_003960.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K-12 substr. W3110] gi|157157494|ref|YP_001465326.1| transcriptional activator RfaH [Escherichia coli E24377A] gi|157163316|ref|YP_001460634.1| transcriptional activator RfaH [Escherichia coli HS] gi|168750342|ref|ZP_02775364.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4113] gi|168753743|ref|ZP_02778750.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4401] gi|168763971|ref|ZP_02788978.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4501] gi|168768127|ref|ZP_02793134.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4486] gi|168775603|ref|ZP_02800610.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4196] gi|168780745|ref|ZP_02805752.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4076] gi|168786684|ref|ZP_02811691.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC869] gi|168801090|ref|ZP_02826097.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC508] gi|170022138|ref|YP_001727092.1| transcriptional activator RfaH [Escherichia coli ATCC 8739] gi|170083320|ref|YP_001732640.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K-12 substr. DH10B] gi|187730813|ref|YP_001882542.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94] gi|188496080|ref|ZP_03003350.1| transcriptional activator RfaH [Escherichia coli 53638] gi|191166059|ref|ZP_03027894.1| transcriptional activator RfaH [Escherichia coli B7A] gi|193065712|ref|ZP_03046777.1| transcriptional activator RfaH [Escherichia coli E22] gi|193067980|ref|ZP_03048945.1| transcriptional activator RfaH [Escherichia coli E110019] gi|194429216|ref|ZP_03061744.1| transcriptional activator RfaH [Escherichia coli B171] gi|194438631|ref|ZP_03070719.1| transcriptional activator RfaH [Escherichia coli 101-1] gi|195938132|ref|ZP_03083514.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4024] gi|208806896|ref|ZP_03249233.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4206] gi|208814326|ref|ZP_03255655.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4045] gi|208821153|ref|ZP_03261473.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4042] gi|209396563|ref|YP_002273359.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4115] gi|209921319|ref|YP_002295403.1| transcriptional activator RfaH [Escherichia coli SE11] gi|217324983|ref|ZP_03441067.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. TW14588] gi|218556406|ref|YP_002389320.1| transcriptional activator RfaH [Escherichia coli IAI1] gi|218697561|ref|YP_002405228.1| transcriptional activator RfaH [Escherichia coli 55989] gi|218701455|ref|YP_002409084.1| transcriptional activator RfaH [Escherichia coli IAI39] gi|218707473|ref|YP_002414992.1| transcriptional activator RfaH [Escherichia coli UMN026] gi|238902915|ref|YP_002928711.1| DNA-binding transcriptional antiterminator [Escherichia coli BW2952] gi|253775519|ref|YP_003038350.1| transcriptional activator RfaH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163799|ref|YP_003046907.1| transcriptional activator RfaH [Escherichia coli B str. REL606] gi|254795838|ref|YP_003080675.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. TW14359] gi|256021414|ref|ZP_05435279.1| transcriptional activator RfaH [Shigella sp. D9] gi|256026187|ref|ZP_05440052.1| transcriptional activator RfaH [Escherichia sp. 4_1_40B] gi|260846384|ref|YP_003224162.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O103:H2 str. 12009] gi|260857754|ref|YP_003231645.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O26:H11 str. 11368] gi|260870564|ref|YP_003236966.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O111:H- str. 11128] gi|261225616|ref|ZP_05939897.1| DNA-binding transcriptional antiterminator [Escherichia coli O157:H7 str. FRIK2000] gi|261255662|ref|ZP_05948195.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O157:H7 str. FRIK966] gi|291285257|ref|YP_003502075.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. CB9615] gi|293407466|ref|ZP_06651386.1| rfaH [Escherichia coli FVEC1412] gi|293417307|ref|ZP_06659932.1| transcriptional activator RfaH [Escherichia coli B185] gi|293468158|ref|ZP_06664570.1| transcriptional activator RfaH [Escherichia coli B088] gi|297516232|ref|ZP_06934618.1| transcriptional activator RfaH [Escherichia coli OP50] gi|298383208|ref|ZP_06992802.1| transcriptional activator rfaH [Escherichia coli FVEC1302] gi|300818686|ref|ZP_07098893.1| transcriptional activator RfaH [Escherichia coli MS 107-1] gi|300823380|ref|ZP_07103511.1| transcriptional activator RfaH [Escherichia coli MS 119-7] gi|300900604|ref|ZP_07118766.1| transcriptional activator RfaH [Escherichia coli MS 198-1] gi|300904096|ref|ZP_07121975.1| transcriptional activator RfaH [Escherichia coli MS 84-1] gi|300919846|ref|ZP_07136316.1| transcriptional activator RfaH [Escherichia coli MS 115-1] gi|300923346|ref|ZP_07139392.1| transcriptional activator RfaH [Escherichia coli MS 182-1] gi|300929975|ref|ZP_07145409.1| transcriptional activator RfaH [Escherichia coli MS 187-1] gi|300950394|ref|ZP_07164318.1| transcriptional activator RfaH [Escherichia coli MS 116-1] gi|300955152|ref|ZP_07167551.1| transcriptional activator RfaH [Escherichia coli MS 175-1] gi|301025679|ref|ZP_07189196.1| transcriptional activator RfaH [Escherichia coli MS 69-1] gi|301029060|ref|ZP_07192211.1| transcriptional activator RfaH [Escherichia coli MS 196-1] gi|301303737|ref|ZP_07209858.1| transcriptional activator RfaH [Escherichia coli MS 124-1] gi|301328390|ref|ZP_07221479.1| transcriptional activator RfaH [Escherichia coli MS 78-1] gi|301646091|ref|ZP_07245993.1| transcriptional activator RfaH [Escherichia coli MS 146-1] gi|307140539|ref|ZP_07499895.1| transcriptional activator RfaH [Escherichia coli H736] gi|307313585|ref|ZP_07593205.1| NusG antitermination factor [Escherichia coli W] gi|309796212|ref|ZP_07690622.1| transcriptional activator RfaH [Escherichia coli MS 145-7] gi|312971870|ref|ZP_07786044.1| transcriptional activator RfaH [Escherichia coli 1827-70] gi|331644573|ref|ZP_08345693.1| transcriptional activator RfaH [Escherichia coli H736] gi|331655526|ref|ZP_08356519.1| transcriptional activator RfaH [Escherichia coli M718] gi|331665492|ref|ZP_08366391.1| transcriptional activator RfaH [Escherichia coli TA143] gi|331670687|ref|ZP_08371524.1| transcriptional activator RfaH [Escherichia coli TA271] gi|331675305|ref|ZP_08376056.1| transcriptional activator RfaH [Escherichia coli TA280] gi|331679952|ref|ZP_08380615.1| transcriptional activator RfaH [Escherichia coli H591] gi|331685581|ref|ZP_08386165.1| transcriptional activator RfaH [Escherichia coli H299] gi|84027859|sp|P0AFW1|RFAH_ECO57 RecName: Full=Transcriptional activator rfaH gi|84027860|sp|P0AFW0|RFAH_ECOLI RecName: Full=Transcriptional activator rfaH gi|146386655|pdb|2OUG|A Chain A, Crystal Structure Of The Rfah Transcription Factor At 2.1a Resolution gi|146386656|pdb|2OUG|B Chain B, Crystal Structure Of The Rfah Transcription Factor At 2.1a Resolution gi|146386657|pdb|2OUG|C Chain C, Crystal Structure Of The Rfah Transcription Factor At 2.1a Resolution gi|146386658|pdb|2OUG|D Chain D, Crystal Structure Of The Rfah Transcription Factor At 2.1a Resolution gi|12518720|gb|AAG59036.1|AE005615_4 transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin [Escherichia coli O157:H7 str. EDL933] gi|41729|emb|CAA46147.1| transcriptional activator of haemolysin synthesis and secretion [Escherichia coli] gi|148241|gb|AAA67638.1| also called sfrB, hlyT [Escherichia coli str. K-12 substr. MG1655] gi|1209302|gb|AAA91060.1| RfaH [Escherichia coli] gi|1790276|gb|AAC76845.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K-12 substr. MG1655] gi|13364246|dbj|BAB38193.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. Sakai] gi|81243128|gb|ABB63838.1| transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin [Shigella dysenteriae Sd197] gi|81247604|gb|ABB68312.1| RfaH [Shigella boydii Sb227] gi|85676211|dbj|BAE77461.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K12 substr. W3110] gi|157068996|gb|ABV08251.1| transcriptional activator RfaH [Escherichia coli HS] gi|157079524|gb|ABV19232.1| transcriptional activator RfaH [Escherichia coli E24377A] gi|169757066|gb|ACA79765.1| transcriptional acivator RfaH [Escherichia coli ATCC 8739] gi|169891155|gb|ACB04862.1| DNA-binding transcriptional antiterminator [Escherichia coli str. K-12 substr. DH10B] gi|187427805|gb|ACD07079.1| transcriptional activator RfaH [Shigella boydii CDC 3083-94] gi|187768834|gb|EDU32678.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4196] gi|188015407|gb|EDU53529.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4113] gi|188491279|gb|EDU66382.1| transcriptional activator RfaH [Escherichia coli 53638] gi|189001465|gb|EDU70451.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4076] gi|189358848|gb|EDU77267.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4401] gi|189362555|gb|EDU80974.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4486] gi|189365970|gb|EDU84386.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4501] gi|189373233|gb|EDU91649.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC869] gi|189376688|gb|EDU95104.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC508] gi|190903835|gb|EDV63549.1| transcriptional activator RfaH [Escherichia coli B7A] gi|192926679|gb|EDV81308.1| transcriptional activator RfaH [Escherichia coli E22] gi|192958600|gb|EDV89038.1| transcriptional activator RfaH [Escherichia coli E110019] gi|194412728|gb|EDX29022.1| transcriptional activator RfaH [Escherichia coli B171] gi|194422435|gb|EDX38434.1| transcriptional activator RfaH [Escherichia coli 101-1] gi|208726697|gb|EDZ76298.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4206] gi|208735603|gb|EDZ84290.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4045] gi|208741276|gb|EDZ88958.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4042] gi|209157963|gb|ACI35396.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. EC4115] gi|209752998|gb|ACI74806.1| putative oxidoreductase [Escherichia coli] gi|209753000|gb|ACI74807.1| putative oxidoreductase [Escherichia coli] gi|209753002|gb|ACI74808.1| putative oxidoreductase [Escherichia coli] gi|209753004|gb|ACI74809.1| putative oxidoreductase [Escherichia coli] gi|209753006|gb|ACI74810.1| putative oxidoreductase [Escherichia coli] gi|209914578|dbj|BAG79652.1| transcriptional activator [Escherichia coli SE11] gi|217321204|gb|EEC29628.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. TW14588] gi|218354293|emb|CAV00992.1| DNA-binding transcriptional antiterminator [Escherichia coli 55989] gi|218363175|emb|CAR00816.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI1] gi|218371441|emb|CAR19274.1| DNA-binding transcriptional antiterminator [Escherichia coli IAI39] gi|218434570|emb|CAR15499.1| DNA-binding transcriptional antiterminator [Escherichia coli UMN026] gi|238860913|gb|ACR62911.1| DNA-binding transcriptional antiterminator [Escherichia coli BW2952] gi|242379385|emb|CAQ34199.1| RfaH transcriptional antiterminator [Escherichia coli BL21(DE3)] gi|253326563|gb|ACT31165.1| transcriptional acivator RfaH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975700|gb|ACT41371.1| transcriptional activator RfaH [Escherichia coli B str. REL606] gi|253979856|gb|ACT45526.1| transcriptional activator RfaH [Escherichia coli BL21(DE3)] gi|254595238|gb|ACT74599.1| DNA-binding transcriptional antiterminator [Escherichia coli O157:H7 str. TW14359] gi|257756403|dbj|BAI27905.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O26:H11 str. 11368] gi|257761531|dbj|BAI33028.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O103:H2 str. 12009] gi|257766920|dbj|BAI38415.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O111:H- str. 11128] gi|260451317|gb|ACX41739.1| transcriptional acivator RfaH [Escherichia coli DH1] gi|290765130|gb|ADD59091.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. CB9615] gi|291321536|gb|EFE60974.1| transcriptional activator RfaH [Escherichia coli B088] gi|291425577|gb|EFE98615.1| rfaH [Escherichia coli FVEC1412] gi|291431075|gb|EFF04070.1| transcriptional activator RfaH [Escherichia coli B185] gi|298276444|gb|EFI17963.1| transcriptional activator rfaH [Escherichia coli FVEC1302] gi|299877982|gb|EFI86193.1| transcriptional activator RfaH [Escherichia coli MS 196-1] gi|300317923|gb|EFJ67707.1| transcriptional activator RfaH [Escherichia coli MS 175-1] gi|300355904|gb|EFJ71774.1| transcriptional activator RfaH [Escherichia coli MS 198-1] gi|300395881|gb|EFJ79419.1| transcriptional activator RfaH [Escherichia coli MS 69-1] gi|300403932|gb|EFJ87470.1| transcriptional activator RfaH [Escherichia coli MS 84-1] gi|300413105|gb|EFJ96415.1| transcriptional activator RfaH [Escherichia coli MS 115-1] gi|300420374|gb|EFK03685.1| transcriptional activator RfaH [Escherichia coli MS 182-1] gi|300450270|gb|EFK13890.1| transcriptional activator RfaH [Escherichia coli MS 116-1] gi|300462113|gb|EFK25606.1| transcriptional activator RfaH [Escherichia coli MS 187-1] gi|300524166|gb|EFK45235.1| transcriptional activator RfaH [Escherichia coli MS 119-7] gi|300528652|gb|EFK49714.1| transcriptional activator RfaH [Escherichia coli MS 107-1] gi|300841037|gb|EFK68797.1| transcriptional activator RfaH [Escherichia coli MS 124-1] gi|300845189|gb|EFK72949.1| transcriptional activator RfaH [Escherichia coli MS 78-1] gi|301075670|gb|EFK90476.1| transcriptional activator RfaH [Escherichia coli MS 146-1] gi|306906566|gb|EFN37078.1| NusG antitermination factor [Escherichia coli W] gi|308120094|gb|EFO57356.1| transcriptional activator RfaH [Escherichia coli MS 145-7] gi|309704273|emb|CBJ03622.1| transcriptional activator [Escherichia coli ETEC H10407] gi|310334247|gb|EFQ00452.1| transcriptional activator RfaH [Escherichia coli 1827-70] gi|315063132|gb|ADT77459.1| DNA-binding transcriptional antiterminator [Escherichia coli W] gi|315138416|dbj|BAJ45575.1| transcriptional activator RfaH [Escherichia coli DH1] gi|315254206|gb|EFU34174.1| transcriptional activator RfaH [Escherichia coli MS 85-1] gi|315618714|gb|EFU99299.1| transcriptional activator RfaH [Escherichia coli 3431] gi|320186230|gb|EFW60969.1| Transcriptional activator RfaH [Shigella flexneri CDC 796-83] gi|320191065|gb|EFW65715.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. EC1212] gi|320198453|gb|EFW73054.1| Transcriptional activator RfaH [Escherichia coli EC4100B] gi|320644710|gb|EFX13760.1| transcriptional activator RfaH [Escherichia coli O157:H- str. 493-89] gi|320650035|gb|EFX18538.1| transcriptional activator RfaH [Escherichia coli O157:H- str. H 2687] gi|320655382|gb|EFX23324.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661007|gb|EFX28450.1| transcriptional activator RfaH [Escherichia coli O55:H7 str. USDA 5905] gi|320666131|gb|EFX33145.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. LSU-61] gi|323155249|gb|EFZ41433.1| transcriptional activator RfaH [Escherichia coli EPECa14] gi|323161095|gb|EFZ47013.1| transcriptional activator RfaH [Escherichia coli E128010] gi|323173460|gb|EFZ59089.1| transcriptional activator RfaH [Escherichia coli LT-68] gi|323177853|gb|EFZ63437.1| transcriptional activator RfaH [Escherichia coli 1180] gi|323182612|gb|EFZ68016.1| transcriptional activator RfaH [Escherichia coli 1357] gi|323380804|gb|ADX53072.1| transcriptional acivator RfaH [Escherichia coli KO11] gi|323934143|gb|EGB30578.1| transcriptional activator RfaH [Escherichia coli E1520] gi|323938976|gb|EGB35195.1| transcriptional activator RfaH [Escherichia coli E482] gi|323943842|gb|EGB39936.1| transcriptional activator RfaH [Escherichia coli H120] gi|323959111|gb|EGB54780.1| transcriptional activator RfaH [Escherichia coli H489] gi|323964092|gb|EGB59582.1| transcriptional activator RfaH [Escherichia coli M863] gi|323969303|gb|EGB64602.1| transcriptional activator RfaH [Escherichia coli TA007] gi|324016241|gb|EGB85460.1| transcriptional activator RfaH [Escherichia coli MS 117-3] gi|324115697|gb|EGC09632.1| transcriptional activator RfaH [Escherichia coli E1167] gi|326344298|gb|EGD68058.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1125] gi|326347874|gb|EGD71588.1| Transcriptional activator RfaH [Escherichia coli O157:H7 str. 1044] gi|327250701|gb|EGE62407.1| transcriptional activator RfaH [Escherichia coli STEC_7v] gi|331036245|gb|EGI08480.1| transcriptional activator RfaH [Escherichia coli H736] gi|331046847|gb|EGI18931.1| transcriptional activator RfaH [Escherichia coli M718] gi|331057390|gb|EGI29379.1| transcriptional activator RfaH [Escherichia coli TA143] gi|331062160|gb|EGI34082.1| transcriptional activator RfaH [Escherichia coli TA271] gi|331067591|gb|EGI38995.1| transcriptional activator RfaH [Escherichia coli TA280] gi|331072499|gb|EGI43831.1| transcriptional activator RfaH [Escherichia coli H591] gi|331077282|gb|EGI48496.1| transcriptional activator RfaH [Escherichia coli H299] gi|332088527|gb|EGI93643.1| transcriptional activator RfaH [Shigella boydii 3594-74] gi|332105002|gb|EGJ08348.1| transcriptional activator RfaH [Shigella sp. D9] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|293413282|ref|ZP_06655944.1| transcriptional activator RfaH [Escherichia coli B354] gi|284923948|emb|CBG37047.1| transcriptional activator [Escherichia coli 042] gi|291468230|gb|EFF10727.1| transcriptional activator RfaH [Escherichia coli B354] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKMVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|26250608|ref|NP_756648.1| transcriptional activator RfaH [Escherichia coli CFT073] gi|91213389|ref|YP_543375.1| transcriptional activator RfaH [Escherichia coli UTI89] gi|110644186|ref|YP_671916.1| transcriptional activator RfaH [Escherichia coli 536] gi|117626120|ref|YP_859443.1| transcriptional activator RfaH [Escherichia coli APEC O1] gi|191173932|ref|ZP_03035451.1| transcriptional activator RfaH [Escherichia coli F11] gi|215489181|ref|YP_002331612.1| transcriptional activator RfaH [Escherichia coli O127:H6 str. E2348/69] gi|218560923|ref|YP_002393836.1| transcriptional activator RfaH [Escherichia coli S88] gi|218692134|ref|YP_002400346.1| transcriptional activator RfaH [Escherichia coli ED1a] gi|237702875|ref|ZP_04533356.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA] gi|300939921|ref|ZP_07154551.1| transcriptional activator RfaH [Escherichia coli MS 21-1] gi|300979538|ref|ZP_07174603.1| transcriptional activator RfaH [Escherichia coli MS 200-1] gi|300985617|ref|ZP_07177504.1| transcriptional activator RfaH [Escherichia coli MS 45-1] gi|301047251|ref|ZP_07194338.1| transcriptional activator RfaH [Escherichia coli MS 185-1] gi|306815099|ref|ZP_07449252.1| transcriptional activator RfaH [Escherichia coli NC101] gi|331649687|ref|ZP_08350769.1| transcriptional activator RfaH [Escherichia coli M605] gi|331660205|ref|ZP_08361141.1| transcriptional activator RfaH [Escherichia coli TA206] gi|9965392|gb|AAG10071.1|AF294318_1 transcriptional activator RfaH [Escherichia coli] gi|26111039|gb|AAN83222.1|AE016770_22 Transcriptional activator rfaH [Escherichia coli CFT073] gi|91074963|gb|ABE09844.1| transcriptional activator RfaH [Escherichia coli UTI89] gi|110345778|gb|ABG72015.1| transcriptional activator RfaH [Escherichia coli 536] gi|115515244|gb|ABJ03319.1| transcriptional activator RfaH [Escherichia coli APEC O1] gi|190905799|gb|EDV65419.1| transcriptional activator RfaH [Escherichia coli F11] gi|215267253|emb|CAS11702.1| DNA-binding transcriptional antiterminator RfaH [Escherichia coli O127:H6 str. E2348/69] gi|218367692|emb|CAR05481.1| DNA-binding transcriptional antiterminator [Escherichia coli S88] gi|218429698|emb|CAR10658.2| DNA-binding transcriptional antiterminator [Escherichia coli ED1a] gi|222035560|emb|CAP78305.1| Transcriptional activator rfaH [Escherichia coli LF82] gi|226903046|gb|EEH89305.1| transcriptional activator RfaH [Escherichia sp. 3_2_53FAA] gi|281180909|dbj|BAI57239.1| transcriptional activator [Escherichia coli SE15] gi|294492287|gb|ADE91043.1| transcriptional activator RfaH [Escherichia coli IHE3034] gi|300300841|gb|EFJ57226.1| transcriptional activator RfaH [Escherichia coli MS 185-1] gi|300307979|gb|EFJ62499.1| transcriptional activator RfaH [Escherichia coli MS 200-1] gi|300408001|gb|EFJ91539.1| transcriptional activator RfaH [Escherichia coli MS 45-1] gi|300455231|gb|EFK18724.1| transcriptional activator RfaH [Escherichia coli MS 21-1] gi|305851468|gb|EFM51922.1| transcriptional activator RfaH [Escherichia coli NC101] gi|307628923|gb|ADN73227.1| transcriptional activator RfaH [Escherichia coli UM146] gi|312948416|gb|ADR29243.1| transcriptional activator RfaH [Escherichia coli O83:H1 str. NRG 857C] gi|315284781|gb|EFU44226.1| transcriptional activator RfaH [Escherichia coli MS 110-3] gi|315293213|gb|EFU52565.1| transcriptional activator RfaH [Escherichia coli MS 153-1] gi|315300809|gb|EFU60034.1| transcriptional activator RfaH [Escherichia coli MS 16-3] gi|320197665|gb|EFW72277.1| Transcriptional activator RfaH [Escherichia coli WV_060327] gi|323189730|gb|EFZ75009.1| transcriptional activator RfaH [Escherichia coli RN587/1] gi|323949255|gb|EGB45145.1| transcriptional activator RfaH [Escherichia coli H252] gi|323954070|gb|EGB49868.1| transcriptional activator RfaH [Escherichia coli H263] gi|324007531|gb|EGB76750.1| transcriptional activator RfaH [Escherichia coli MS 57-2] gi|324014652|gb|EGB83871.1| transcriptional activator RfaH [Escherichia coli MS 60-1] gi|330908164|gb|EGH36683.1| transcriptional activator RfaH [Escherichia coli AA86] gi|331041557|gb|EGI13705.1| transcriptional activator RfaH [Escherichia coli M605] gi|331052773|gb|EGI24808.1| transcriptional activator RfaH [Escherichia coli TA206] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPST---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|170682425|ref|YP_001746174.1| transcriptional activator RfaH [Escherichia coli SMS-3-5] gi|170520143|gb|ACB18321.1| transcriptional activator RfaH [Escherichia coli SMS-3-5] Length = 162 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMISLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|194434034|ref|ZP_03066304.1| transcriptional activator RfaH [Shigella dysenteriae 1012] gi|194417692|gb|EDX33791.1| transcriptional activator RfaH [Shigella dysenteriae 1012] gi|332084383|gb|EGI89581.1| transcriptional activator RfaH [Shigella boydii 5216-82] Length = 162 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|163752772|ref|ZP_02159896.1| NusG antitermination factor [Kordia algicida OT-1] gi|161326504|gb|EDP97829.1| NusG antitermination factor [Kordia algicida OT-1] Length = 170 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 13/175 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ V S EKK + L+++ + +P + V RK FP Y Sbjct: 7 WHVLYVKSRWEKKV---------HNSLENISIKSFLPKTKTVQQWSDRKKTILTPLFPSY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSSVF 122 V + + +H ++ G+ + VT+ EI I V+ + ++ F Sbjct: 58 VFVYIE-SPLDFHKALSVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTF 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 ++GE + GP + + + E +++ V + + + N +K V Sbjct: 117 PKIGEMKKIEQGPLSGLDCEIIEA-ENYNKIIVRISSLRQNILATIPLNSFKKAV 170 >gi|74314353|ref|YP_312772.1| transcriptional activator RfaH [Shigella sonnei Ss046] gi|73857830|gb|AAZ90537.1| transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin [Shigella sonnei Ss046] Length = 162 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G + + V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASLAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|313203456|ref|YP_004042113.1| ngn domaiN-containing protein [Paludibacter propionicigenes WB4] gi|312442772|gb|ADQ79128.1| NGN domain-containing protein [Paludibacter propionicigenes WB4] Length = 176 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 16/175 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK + E + ++V R GY Sbjct: 16 WYAVYTAPRAEKKV---------SERFSDVGIEHYLALQKVKRRWSDRIKEVLIPVVNGY 66 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123 + + DK + + I F+ G P + D +IE++ VE A + S F Sbjct: 67 IFVHIQ--DKDFEKVTKIYGAIAFVREGGRPVAIPDCQIENLRLMVEGADEPIEFSVEDF 124 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV-TPVELAYNQVEKIV 177 GE V ++ GP G + V K +V + + FG T V +++ +EK++ Sbjct: 125 ARGESVTITKGPLTGMMGELVEVKG-KHKVLIRLERFGSAITTVPVSF--IEKVL 176 >gi|261346527|ref|ZP_05974171.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541] gi|282565231|gb|EFB70766.1| transcriptional activator RfaH [Providencia rustigianii DSM 4541] Length = 164 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 14/176 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A+E L P + V +G++V Sbjct: 1 MEK-WYLLYCKRGQLDRAIE---------HLTRQYVTCMTPMTEMEKVVRGKRVIVTEAL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ +K T++ T V F+ G+ P V + +E + + P Sbjct: 51 FPNYLFVKFDHEKIHTTTVQSTRGVSHFIRFGKLPVEVPEEIMELLQQAPIGHSKAPDL- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V ++DG FA I D E SR + + I + Q +K+ Sbjct: 110 --PAHGDSVIITDGIFAGVKAIFDEPDGE-SRSILLLNILNTNVVKVIDNTQFKKL 162 >gi|238793505|ref|ZP_04637129.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909] gi|238727095|gb|EEQ18625.1| Transcriptional activator rfaH [Yersinia intermedia ATCC 29909] Length = 162 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQTVN---------CWTPIVTIEKIVRGKRIEASEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + I + + + P V Sbjct: 53 NYLFVEFDPEYIHTTTISATRGVSHFVRFGAQPAVIPAIVIAEMQSHTMDKIIAPEVPV- 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V + +G FA I D E +R + + + L Q EK Sbjct: 112 --PGDIVTIIEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSQVMQSLDNRQFEK 161 >gi|307308731|ref|ZP_07588427.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] gi|306900737|gb|EFN31348.1| NusG antitermination factor [Sinorhizobium meliloti BL225C] Length = 215 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY + V E S+ E +P ERVV VR GR S+ +F Sbjct: 47 SARWYCLLVKKGREFDVENSLREA---------NVEAFMPRERVVRVRHGRIFESDVPYF 97 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+L++ V + + +H ++ VI +G V D E + ++ + P + Sbjct: 98 PSYMLVRCVPSPEAFHGLRRHRNVIDIVGGASGYHIVRD-ENVAMFKRICEDAEAPRVAT 156 Query: 122 F--FEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVVIFGRV 163 F+ G+R + GPFA F IV V +++ V + + GR Sbjct: 157 DKTFKEGDRADIVLGPFAGFMCIVTAVKWCRQAKASVRIDVHGRP 201 >gi|318607561|emb|CBY29059.1| transcriptional activator RfaH [Yersinia enterocolitica subsp. palearctica Y11] Length = 162 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQKVN---------CWTPIVTIEKIMRGKRIETTEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + I + + + P Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEI--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G FA I D E +R + + + L Q EK Sbjct: 110 PTPGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161 >gi|257458183|ref|ZP_05623337.1| transcription antitermination protein NusG [Treponema vincentii ATCC 35580] gi|257444477|gb|EEV19566.1| transcription antitermination protein NusG [Treponema vincentii ATCC 35580] Length = 55 Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 FE G++V + +GPF +F G V+ V E++++ V V IFGR TPVE+ QVE I Sbjct: 1 MFEPGQQVKIIEGPFDTFTGTVEEVMAERNKLRVMVAIFGRTTPVEVDMLQVELI 55 >gi|320176774|gb|EFW51808.1| Transcriptional activator RfaH [Shigella dysenteriae CDC 74-1112] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVCGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 >gi|332159889|ref|YP_004296466.1| transcriptional activator RfaH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664119|gb|ADZ40763.1| transcriptional activator RfaH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859156|emb|CBX69508.1| transcriptional activator rfaH [Yersinia enterocolitica W22703] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEVLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + I + + + P Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPAIVISEMQSYTTDKIIAPEI--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G FA I D E +R + + + L Q EK Sbjct: 110 PMPGDTVIITEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161 >gi|261823464|ref|YP_003261570.1| transcriptional activator RfaH [Pectobacterium wasabiae WPP163] gi|261607477|gb|ACX89963.1| transcriptional acivator RfaH [Pectobacterium wasabiae WPP163] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + P + + +G++ Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLER---------QDVTCVSPMITLDKIVRGKRTEVCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ + I+ + + + P Sbjct: 51 FPNYLFVEFDPERIHTTTISATRGVNSFVRFGALPATIPQQVIDELSLRPIQKIIDP--- 107 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + G+ V ++DG F+ I D E +R + + + + + + K Sbjct: 108 LTPQPGDNVVITDGVFSGLQAIYTEPDGE-ARSMLLLCMLNKQVKHSIDNREFRK 161 >gi|123440656|ref|YP_001004649.1| transcriptional activator RfaH [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087617|emb|CAL10398.1| putative regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KHWHLLYCKRGQLLRAKEHLERQEVN---------CWTPIVTIEKIMRGKRIETTEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TI T V F+ G P+ + + I + + + P Sbjct: 53 NYLFVEFDPEHIHTTTISATRGVSHFVRFGVQPAVIPATVISEMQSHTTDKIIAPEI--- 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V + +G FA I D E +R + + + L Q EK Sbjct: 110 PTPGDTVIIKEGVFAGLQAIYTEPDGE-ARSMLLLNMLNSPVLQSLDNRQFEK 161 >gi|148980746|ref|ZP_01816202.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3] gi|145961096|gb|EDK26415.1| transcriptional activator RfaH [Vibrionales bacterium SWAT-3] Length = 168 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ +K+A + + + E P V V +G++ + FP Sbjct: 2 KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKVVKEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ-VEAAVQRPVSS 120 YV ++ + T++ T V+ F+ G P V + + + + Sbjct: 53 SYVFVRFDYEQGPSFTTVRSTRGVVDFIKFGAQPHEVQGDLVFELKELEMHCSNDVEDCC 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V FE G+ V ++ G FA I D E +R + V + +V P+ + ++ Sbjct: 113 VEFESGQVVKINSGQFAGIEAIFHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165 >gi|149199619|ref|ZP_01876652.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155] gi|149137272|gb|EDM25692.1| putative transcriptional activator [Lentisphaera araneosa HTCC2155] Length = 169 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 12/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY + E +S P V VR+G+ FP Y Sbjct: 6 WYCLYTKPRQENLTAQSAL---------DAGFPTFNPKIEVRKVRRGKATYVHAALFPSY 56 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT-DSEIEHIMNQVEAAVQRPVSSVFF 123 V I+A + + V +G G + + + I ++ Sbjct: 57 VFIQA--NEGNLDKARYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHEL 114 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G++V V DGP I K ++ R V +F ++ + K Sbjct: 115 KDGDKVQVLDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIK 166 >gi|320639325|gb|EFX08947.1| transcriptional activator RfaH [Escherichia coli O157:H7 str. G5101] Length = 162 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTKFRKL 162 >gi|237727428|ref|ZP_04557909.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434284|gb|EEO44361.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 170 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK ER P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE + V GP G + VD K++V V + + G V++ VEKI+ Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKII 166 >gi|212710331|ref|ZP_03318459.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM 30120] gi|212687138|gb|EEB46666.1| hypothetical protein PROVALCAL_01390 [Providencia alcalifaciens DSM 30120] Length = 164 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 18/177 (10%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ ++AVE L P + V +G++ Sbjct: 1 MEK-WYLLYCKRGQLERAVE---------HLTRQDVACMTPMTEMEKVVRGKRTVVTEAL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ +K TI+ T V F+ G P+ V + IE I + Q P Sbjct: 51 FPNYLFVKFDHEQIHTTTIQSTRGVSHFIRFGVLPAEVPEEIIELIQQTPISHTQSPDL- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE--LAYNQVEK 175 G+ V +++G FA N I + E SR + + I T VE + Q +K Sbjct: 110 --PSHGDNVVITEGIFAGVNAIFNEPNGE-SRSILLLNILN--TTVEKVIDNTQFKK 161 >gi|227888546|ref|ZP_04006351.1| transcriptional activator RfaH [Escherichia coli 83972] gi|227834385|gb|EEJ44851.1| transcriptional activator RfaH [Escherichia coli 83972] gi|307555988|gb|ADN48763.1| transcriptional activator RfaH [Escherichia coli ABU 83972] Length = 162 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPST---PY 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V +++G F F I D E +R + + + + + + K+ Sbjct: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTESRKL 162 >gi|256422413|ref|YP_003123066.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] gi|256037321|gb|ACU60865.1| NusG antitermination factor [Chitinophaga pinensis DSM 2588] Length = 174 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%) Query: 1 MTP---RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M+ WY++ E + + + +I +P V R E Sbjct: 1 MSKFNVGWYLLYTRPRQEARVAK---------EMADKNIQIYLPYTTVTRRWTDRIKVLE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FP YV + + Y+ + ++ G + V+D+ ++ + +A Sbjct: 52 VPLFPSYVFVHLTNMHEFYYGS-NLESACSYVRFGNEVARVSDAAVDAVRTIAKAGNNLE 110 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 VSS F G+++ + +GP N V K ++ V V + R ++ + Sbjct: 111 VSSERFTPGQQMMIKEGPLCGLNCEVIQYKG-KDKILVRVHMLQRSIMADMPAS 163 >gi|188532399|ref|YP_001906196.1| transcriptional activator RfaH [Erwinia tasmaniensis Et1/99] gi|188027441|emb|CAO95288.1| Transcriptional activator [Erwinia tasmaniensis Et1/99] Length = 166 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 14/164 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E L P + +G+ Sbjct: 1 ME-SWYLLYCKRGQLLRAQE---------HLGRQAVHCLSPMVSIEKTVRGKPTRVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ V I + ++ Sbjct: 51 FPNYLFVEFDPESIHTTTISATRGVSHFVRFGNQPATVPLDVINALQTHPALSIDDAEL- 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 +VG+ V +++G F I D E +R + + + + Sbjct: 110 --PQVGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150 >gi|227821697|ref|YP_002825667.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234] gi|227340696|gb|ACP24914.1| hypothetical protein NGR_c11290 [Sinorhizobium fredii NGR234] Length = 169 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG--RKVNSERRFF 61 WY+V+ + ++KA + + P R + + + E F Sbjct: 3 HWYVVRTRAGQQQKA---------TREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLF 53 Query: 62 PGYVLIKAVMTDKVY-HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GYV ++D ++ V+ G P E + Sbjct: 54 TGYVFAYLRISDFGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRPPV 113 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V DGP V N+ ++ + V IFG + VE+ + ++ Sbjct: 114 RRLKAGDTVQVKDGPLTGHYAAVTNIVGRRA-IKAFVEIFGSLREVEIGLESIRRV 168 >gi|189499920|ref|YP_001959390.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1] gi|189495361|gb|ACE03909.1| NusG antitermination factor [Chlorobium phaeobacteroides BS1] Length = 169 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 10/141 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V V S EKK + R +P RK F GY Sbjct: 9 WYAVYVRSRFEKKIHQLFEDR---------GITSFLPLVDTWRQWSDRKKKVSMPLFKGY 59 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V ++ Y + +T V+ F+G PS + D +IE I V Sbjct: 60 VFVRINFRKDHYTIL-ETDGVVKFIGIRNVPSVIRDRDIEWIKILVGEPDSLRNVLPEMP 118 Query: 125 VGERVCVSDGPFASFNGIVKN 145 G+RV V GPF G+++ Sbjct: 119 AGQRVKVIAGPFVGLEGVIRK 139 >gi|29348295|ref|NP_811798.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253569339|ref|ZP_04846749.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340198|gb|AAO77992.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251841358|gb|EES69439.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 168 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W +V V SN EKK E + L E +P + R +R P Sbjct: 5 KCWLVVCVQSNREKKTYERL---------SALGFESFLPLQEETRRWSDRSKKVQRVVIP 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 V + ++++ + L P+ + D+++E ++ + + + S Sbjct: 56 MVVFARIAPSERISVLRLPSVSRFMVLRGESAPAIIPDAQMERFRFMLDYSEEAVEMCSE 115 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + GE+V V GP G + +D KS+V V + + G VE+ VE+I Sbjct: 116 RIQPGEQVKVIKGPLTGLTGELITMDG-KSKVAVRINMLG-AAMVEVPVGFVERI 168 >gi|260642278|ref|ZP_05415223.2| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260622942|gb|EEX45813.1| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 196 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAVVRIYHEKKTSE----RLTKMGIEN-----FLPIQQEVHKWSDRRKVVDRVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + ++ L P+ + D ++ ++ + + S Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE+V V GP A G + NVD KS+V V + + G Sbjct: 135 SPLAPGEKVRVIKGPLAGLEGELVNVDG-KSKVAVRLTMLG 174 >gi|167769207|ref|ZP_02441260.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM 17241] gi|167668847|gb|EDS12977.1| hypothetical protein ANACOL_00530 [Anaerotruncus colihominis DSM 17241] Length = 169 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 11/171 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++QV + E +++ + +P E + + G + Sbjct: 1 MAK-WYVLQVLAGQETAVRDAL---------HIMGIRAAVPQEERLLRKNGGWTSRIYTL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 FPGYV + + + Y+ +K P V+ FLG + + + S Sbjct: 51 FPGYVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPS 110 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 V V + +G +F + D R V + + G + L+ Sbjct: 111 RVEELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLSM 161 >gi|294054417|ref|YP_003548075.1| NusG antitermination factor [Coraliomargarita akajimensis DSM 45221] gi|293613750|gb|ADE53905.1| NusG antitermination factor [Coraliomargarita akajimensis DSM 45221] Length = 186 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 11/169 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ + E A + ++ E P + + K FPGY Sbjct: 24 WFCLRTQTKREHIAAAML-QQIEA-------VESFCPRVSQLRRTRAGKRRFVEAMFPGY 75 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + ++ K H T V + G + + ++ P S+ E Sbjct: 76 IFARFNLSQKHRHVTH-TQGVKYLVKHGNRLAIPDTIIESLRASLPNDMIEAPDLSI--E 132 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G + + G NG V ++RV V + GR V ++ + V Sbjct: 133 EGANIELISGSLQGLNGTVLAQLPAENRVQVLLDFLGREITVAVSADSV 181 >gi|295083926|emb|CBK65449.1| transcription antitermination protein nusG [Bacteroides xylanisolvens XB1A] Length = 196 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAIVRICHEKKTSE----RLTKMGIEN-----FLPIQQEVHQWSDRRKVVDRVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + ++ L P+ + D ++ ++ + + S Sbjct: 75 PMMIFVHVDPREQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE++ V GP A G + NV+ KS+V V + + G Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVNVNG-KSKVVVRLTMLG 174 >gi|292486707|ref|YP_003529577.1| transcriptional activator RfaH [Erwinia amylovora CFBP1430] gi|292897941|ref|YP_003537310.1| transcriptional activator [Erwinia amylovora ATCC 49946] gi|291197789|emb|CBJ44884.1| transcriptional activator [Erwinia amylovora ATCC 49946] gi|291552124|emb|CBA19161.1| Transcriptional activator RfaH [Erwinia amylovora CFBP1430] gi|312170771|emb|CBX79033.1| Transcriptional activator RfaH [Erwinia amylovora ATCC BAA-2158] Length = 166 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 14/164 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G+ Sbjct: 1 ME-SWYLLYCKRGQLLRAQEHLERQAV---------HCLSPMVALEKMVRGKPTQVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ TI T V F+ G P+ V I + QV + R Sbjct: 51 FPNYLFVEFDPELIHTTTISATRGVSHFVRFGNQPATVPQGVINAL--QVGPGLPRDGGQ 108 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + G+ V +++G F I D E +R + + + + Sbjct: 109 LPL-PGDTVIITEGAFEGLKAIFTEPDGE-ARSMLLLNLLNKQV 150 >gi|257791628|ref|YP_003182234.1| NusG antitermination factor [Eggerthella lenta DSM 2243] gi|257475525|gb|ACV55845.1| NusG antitermination factor [Eggerthella lenta DSM 2243] Length = 173 Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 6/170 (3%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y++QV E+ E R+ LV + S ++ +G FPGY+ Sbjct: 9 YVLQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYL 64 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 + + + TIK + LG + E + + + S + Sbjct: 65 FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 124 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G + + +GP +K +D K ++++ + + V + V K Sbjct: 125 GRTI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 172 >gi|222149506|ref|YP_002550463.1| transcription antitermination protein [Agrobacterium vitis S4] gi|221736488|gb|ACM37451.1| transcription antitermination protein [Agrobacterium vitis S4] Length = 220 Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 16/178 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRFF 61 RW + + S E+ +++ E P ER + RK ER F Sbjct: 51 RWVVARCKSGLEQVIRDAL---------TEQGIECWCPCERRRLPPRRRKPAIVVERALF 101 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM--NQVEAAVQRPVS 119 GY+ ++ + ++ Y + ++ +G P + ++ + + + Sbjct: 102 RGYLFVRMIPDNEAYAGLLLASRLQSLMGRDGKPYLMPETLMRQLQLSAKTAERQHMDAC 161 Query: 120 SVFFEV---GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V G++V + GPFA F V+ V ++ +V V+V +FG ++ V + + +E Sbjct: 162 GVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTMGVDAIE 219 >gi|218710232|ref|YP_002417853.1| transcriptional activator RfaH [Vibrio splendidus LGP32] gi|218323251|emb|CAV19428.1| Transcription antiterminator [Vibrio splendidus LGP32] Length = 168 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ +K+A + + + E P V V +G++ + FP Sbjct: 2 KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKLVQEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAV-QRPVSS 120 Y+ ++ + T++ T V+ F+ G P V + + + + Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V FE G+ V ++ G FA I D E +R + V + +V P+ + ++ Sbjct: 113 VEFETGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165 >gi|329954627|ref|ZP_08295687.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328527168|gb|EGF54172.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 187 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EKK + RL+ G++ +P + + R+ +R P Sbjct: 17 QWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIPM 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + D ++ ++ + + + SV Sbjct: 68 MIFVHVTPQERPLPLSLQAVSRYMVLRGESTPAVIPDEQMAQFRFMLDYSPEAVEMCSVP 127 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP A G + V+ KS+V V + + G V++ VEK Sbjct: 128 LAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLGCAH-VDIPIGFVEK 178 >gi|311697218|gb|ADQ00090.1| transcriptional activator RfaH [marine bacterium HP15] Length = 145 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 5/145 (3%) Query: 29 SGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF 88 L + + P V VR G++ F GY+ IK ++ ++ ++ T ++ Sbjct: 2 QNLLNQHVDCFHPKILVEKVRSGKRTQRLEPLFAGYLFIKLKPGEQNWNKLRSTRGILRI 61 Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 +G G P+ + + I+ I ++ + + + G+ V + DGPF N I + D Sbjct: 62 VGFGNTPATIDQTVIDQINARLAS----VTTQGGLKSGQAVELDDGPFKGLNAIFQCYDG 117 Query: 149 EKSRVHVEVVIFGRVTPVELAYNQV 173 + R V + + +++ + Sbjct: 118 D-ERAVVLINFMQKHQRLKVPITSL 141 >gi|32471651|ref|NP_864644.1| NusG-like protein- transcription activator [Rhodopirellula baltica SH 1] gi|32397022|emb|CAD72325.1| probable NusG-like protein-putative transcription activator [Rhodopirellula baltica SH 1] gi|327539892|gb|EGF26494.1| NusG antitermination factor [Rhodopirellula baltica WH47] Length = 184 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 14/172 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ S EK + + +G+ H + + GR S F Y Sbjct: 26 WWLLYTKSRQEKAVIRKLRD----AGVPHYAPMVK----QRFRSPAGRMRESFVPLFSTY 77 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V ++ + L E E + + + Sbjct: 78 VFLRGDDQARYEAIC-----TGSVLKASEIVQVPDLIEDLQQIRSLIVMGVPLTIESQLQ 132 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE V V +G FA + G V + E R+ V V + V+L Q+EKI Sbjct: 133 PGEHVRVKNGTFAGYEGTVIRRENET-RLLVFVRFMEQGVSVKLEDCQLEKI 183 >gi|197287347|ref|YP_002153219.1| transcriptional activator RfaH [Proteus mirabilis HI4320] gi|227356968|ref|ZP_03841340.1| transcriptional activator [Proteus mirabilis ATCC 29906] gi|194684834|emb|CAR46935.1| transcriptional activator [Proteus mirabilis HI4320] gi|227162846|gb|EEI47805.1| transcriptional activator [Proteus mirabilis ATCC 29906] Length = 166 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +I L+ P + + + ++ FP Sbjct: 2 KNWHLLYCKRGQ---IARAIE------HLERQQVICFTPMVTIEKLIRNKRTLVTEPLFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I+ TI T V F+ G E+ + + Sbjct: 53 NYLFIQFDPEVIHTTTINSTRGVNAFVRFG-RYPVTVPQEVIDTLQSPTPSSVIYSEENV 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G F I + D E R + + I + + +K Sbjct: 112 PHSGDYVLITEGVFQGIKAIYQEPDGET-RSILLLKILNNEVKKSVDNKEFKK 163 >gi|265750655|ref|ZP_06086718.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237551|gb|EEZ23001.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 172 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK ER P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE + V GP G + VD K++V V + + G V++ VEK++ Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKML 166 >gi|255533773|ref|YP_003094145.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346757|gb|ACU06083.1| NGN domain protein [Pedobacter heparinus DSM 2366] Length = 176 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 11/149 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY V S EKKA +++ E +P +R + RK E Sbjct: 11 KKWYPVYTQSRAEKKAYQALL---------SKGIEAYLPLQRQLRQWSDRKKWVEEPLIK 61 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + + T + F+ + + D +IE + + + + ++ Sbjct: 62 SYLFVHIARQQQTEVLM--TTGISRFIYFSGKIAAMPDRQIEELKLLLASPYELEITEER 119 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKS 151 GE++ + GP G + +K Sbjct: 120 LLPGEKIEIKAGPLKGIRGEIIEYRSQKQ 148 >gi|86148390|ref|ZP_01066682.1| transcriptional activator RfaH [Vibrio sp. MED222] gi|85833804|gb|EAQ51970.1| transcriptional activator RfaH [Vibrio sp. MED222] Length = 168 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ +K+A + + + E P V V +G++ + FP Sbjct: 2 KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIEVEKVVRGKEKLVQEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA-VQRPVSS 120 Y+ ++ + T++ T V+ F+ G P V + + + + Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPYEVQGDLVFELKEFEKCCSSEVEDCC 112 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V FE G+ V ++ G FA I D E +R + V + +V P+ + ++ Sbjct: 113 VEFESGQVVKINSGQFAGVEAIYHQKDGE-ARSIMLVKMISQVVPISIENEALQ 165 >gi|254797036|ref|YP_003081873.1| putative transcription termination/antitermination factor NusG [Neorickettsia risticii str. Illinois] gi|254590275|gb|ACT69637.1| putative transcription termination/antitermination factor NusG [Neorickettsia risticii str. Illinois] Length = 173 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 16/176 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W +++V S E K + I R V ++ P+ + RF PGY Sbjct: 9 WCVLRVRSGSESKVCDLIKSRC-----SDKVVDLFSPALIRFDASASK------RFLPGY 57 Query: 65 VLIKAVMT----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 + IK ++V FL +P ++D +I+ + N + + P S Sbjct: 58 IFIKVAPGSTFLNEVSIMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVAPESG 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG RV + F + G V +DE S+ V++V G+ V +Q++ + Sbjct: 118 K-ISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 172 >gi|302337848|ref|YP_003803054.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293] gi|301635033|gb|ADK80460.1| NusG antitermination factor [Spirochaeta smaragdinae DSM 11293] Length = 184 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 86/177 (48%), Gaps = 4/177 (2%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLD---HLVTEITIPSERVVSVRKGRKVNSERR 59 +Y +QV + EK+ ++ +++ + + ++ P + ++G+ + Sbjct: 1 MNYYSMQVITRQEKRFMQLAENAIAQFEKEQGVEITGKLLWPRRSLKIRKRGKTTQEQAP 60 Query: 60 FFPGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 FPGY+ +A + +VY +K I FL + + P+T + E +++ + Sbjct: 61 IFPGYLFWQAESLEPEVYWLLKRNSGFIRFLKSNYDIEPLTGASKELLVHFLNYGEVVGT 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S+V F G+R+ V GP G ++ V++ K R +E++++ + ++ A++ ++K Sbjct: 121 STVTFGTGDRIVVLSGPMKGLEGNIRKVNKRKGRAKIELMLYEQSFLIDFAFDGIKK 177 >gi|149198910|ref|ZP_01875951.1| transcription antitermination protein NusG [Lentisphaera araneosa HTCC2155] gi|149137905|gb|EDM26317.1| transcription antitermination protein NusG [Lentisphaera araneosa HTCC2155] Length = 150 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 10/113 (8%) Query: 1 MTP--RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER 58 M +WY +Q S E KA + + R+ + + V E+ +P+E+V +VR+G+K+ R Sbjct: 1 MEKLGQWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNR 60 Query: 59 RFFPGYVLIKAVMTDKV-------YHTIKDTPKVIGFLGTGENPSPVTDSEIE 104 +F+PGY+ + + D+ +H +K+T +I FLG G+ P P++D EI+ Sbjct: 61 KFYPGYLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQ 112 >gi|294777312|ref|ZP_06742765.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|294448841|gb|EFG17388.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] Length = 188 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK +R P Sbjct: 24 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 74 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 75 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 134 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 187 >gi|238750752|ref|ZP_04612251.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380] gi|238711142|gb|EEQ03361.1| Transcriptional activator rfaH [Yersinia rohdei ATCC 43380] Length = 163 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+++ +A E + + P + + +G+++ + FP Sbjct: 2 KYWHLLYCKRGQLLRAKEHLER---------QEVKCWTPIVTIEKIVRGKRIATTEALFP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ I TI T V F+ G P+ + I + + + P V Sbjct: 53 NYLFIAFDPEQIHTTTISATRGVSHFVRFGVQPAVIPAVVIAEMQSHTADKIIDPEVPVA 112 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V +++G F+ I D E +R + + + L Q EK Sbjct: 113 ---GDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNSQVLQSLDNRQFEK 161 >gi|320535930|ref|ZP_08035997.1| transcription termination factor NusG [Treponema phagedenis F0421] gi|320147213|gb|EFW38762.1| transcription termination factor NusG [Treponema phagedenis F0421] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 12/176 (6%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVT----EITIPSERVVSVRKGRKVNSERRFF 61 Y +QV + E +S T ++ P + +KG F Sbjct: 4 YALQVQTGKE-------AFFISSVNAGDKETSERWQVYFPQRTLNIRKKGVFFKKNMPVF 56 Query: 62 PGYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYV + A + K+Y +K T FL +NPSP+ ++ + + + +S Sbjct: 57 PGYVFLAATILDAKLYKKLKSTKGFYRFLPNNQNPSPLFGRDLMLLQHFISFGNLAGISQ 116 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V F+ +R+ + GP G + VD+ K R +++ ++ ++ + +E I Sbjct: 117 VCFDENDRIKILAGPLKGLEGDIVKVDKRKGRAKIKLDMYTDSFLIDFGFEILENI 172 >gi|255530460|ref|YP_003090832.1| NGN domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343444|gb|ACU02770.1| NGN domain protein [Pedobacter heparinus DSM 2366] Length = 168 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 14/175 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+V Y N E+KA+ ++ +P ++V RK E F Sbjct: 7 EKNWYVVVTYPNLERKALLNLLKN---------NFIAFLPLQKVQRKWSDRKKTIEIPLF 57 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ I D+ D V ++ G P+ +++++I +I VE+ Sbjct: 58 PNYLFININEKDRFEAL--DIYGVKRYVTFGGRPAFISETDILNIKRIVESV--DLYIEH 113 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V + GPF GI+ ++R + V + +E+ + + K+ Sbjct: 114 SLVKGDAVKIIGGPFKDMIGILFK-KSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >gi|311695295|gb|ADP98168.1| transcriptional activator RfaH [marine bacterium HP15] Length = 126 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 45 VVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIE 104 + ++ G++ FPGY+ + TD ++ ++ T V+ +G P+P++D+ I+ Sbjct: 1 MEKIKGGKRSKKLEPLFPGYLFVNLEQTDPMWSKLRSTRGVLRIVGFANKPAPISDAVIQ 60 Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 HI + +++ ++ + G+ V +S+GPF N I + D E R V V + Sbjct: 61 HIKDSLDSVAEQ----GGIKPGQAVQLSEGPFEGINAIFQAYDGE-ERAIVLVSFMQKQQ 115 Query: 165 PVELAYNQVEK 175 + + + ++K Sbjct: 116 SIRVPVSAIKK 126 >gi|311281482|ref|YP_003943713.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1] gi|308750677|gb|ADO50429.1| transcriptional acivator RfaH [Enterobacter cloacae SCF1] Length = 162 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 12/147 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ ++A E + + P + + +G++ FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLTPMIALEKIIRGKRTTVSEPLFPNY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ TI T V F+ G +P+ V + I + + P + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGAHPALVPSTVIHQLSIYKPEGIIDPQT---PH 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKS 151 G+ V +++G F I D E Sbjct: 112 PGDSVVITEGAFEGLKAIFTEPDGEAR 138 >gi|85058093|ref|YP_453795.1| transcriptional activator RfaH [Sodalis glossinidius str. 'morsitans'] gi|84778613|dbj|BAE73390.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] Length = 163 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 14/164 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A E + + P + + +G++ + Sbjct: 1 MEA-WYLLYCKRGQLLRAKEHLERQAVA---------CLTPMVTLEKIIRGKRTETCEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ I+ TI T V F+ G P + + I + V P + Sbjct: 51 FPNYLFIEFDPETIHTTTISATRGVSHFVRFGSLPVIIPSAVINDLREHSFDNVTDPETP 110 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + G++V ++ G F I D E +R + + + + Sbjct: 111 LS---GDKVLITTGVFEGLQAIYTEPDGE-ARSMLLLNLLNKQV 150 >gi|92117920|ref|YP_577649.1| NusG antitermination factor [Nitrobacter hamburgensis X14] gi|91800814|gb|ABE63189.1| transcription antitermination protein nusG [Nitrobacter hamburgensis X14] Length = 196 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 28/197 (14%) Query: 1 MTPR--WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEIT--IPSERVVSVRKGRKVNS 56 MT + WY++Q E KA + R G D + +P+ R + Sbjct: 1 MTGKSIWYVLQTRPAHEDKAARGLVAR----GFDPYAPVVYRRVPTGRRDDKGRKLTREI 56 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN-------- 108 R FPGY+ ++ D+ + ++ P + G+L ++ Sbjct: 57 ARPMFPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFG 116 Query: 109 -----------QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 A +R F+ G+ V V G + + V D + RV + Sbjct: 117 RYLDEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLF 175 Query: 158 VIFGRVTPVELAYNQVE 174 IFGR T + +E Sbjct: 176 HIFGRETKIHADQADLE 192 >gi|89071010|ref|ZP_01158230.1| transcriptional antitermination protein, putative [Oceanicola granulosus HTCC2516] gi|89043434|gb|EAR49650.1| transcriptional antitermination protein, putative [Oceanicola granulosus HTCC2516] Length = 162 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84 RL+ L + P ++ +G+ + + FPGY+ + T Sbjct: 10 RLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTRG 69 Query: 85 VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGI 142 V + E+ + + P + +VG+RV V+DGP A Sbjct: 70 VARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVSR 129 Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + E +R+ + + + GR T V + V + Sbjct: 130 IIALAPE-ARIWLLLDLMGRQTRVAVKREAVRR 161 >gi|160885686|ref|ZP_02066689.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483] gi|237719467|ref|ZP_04549948.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293370208|ref|ZP_06616768.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|298482878|ref|ZP_07001061.1| transcriptional regulator [Bacteroides sp. D22] gi|299146176|ref|ZP_07039244.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] gi|156108499|gb|EDO10244.1| hypothetical protein BACOVA_03690 [Bacteroides ovatus ATCC 8483] gi|229451327|gb|EEO57118.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634705|gb|EFF53234.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|298271078|gb|EFI12656.1| transcriptional regulator [Bacteroides sp. D22] gi|298516667|gb|EFI40548.1| putative transcriptional regulator [Bacteroides sp. 3_1_23] Length = 196 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAIVRICHEKKTGE----RLTKMGIEN-----FLPIQQEVHQWSDRRKIVDRVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + + ++ + L P+ + D ++ ++ + + S Sbjct: 75 PMMIFVHVDLQEQKEVLTLSSISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETISMST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE++ V GP A G + +V+ KS+V V + + G Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174 >gi|94970525|ref|YP_592573.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] gi|94552575|gb|ABF42499.1| transcription antitermination protein nusG [Candidatus Koribacter versatilis Ellin345] Length = 194 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS-ERRFFPG 63 W + Y EKK E + R E +P K R+ + FPG Sbjct: 27 WSALFTYPRHEKKVAEQLLCR---------GVESFLPLYAEKRTWKNRQTVTLTLPLFPG 77 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + D+V P V+ + S ++D IE + + RP Sbjct: 78 YVFARFARRDRVRVM--SLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFRE--A 133 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +G+RV ++ GP + G V + RV V + + G+ +E+ +++ Sbjct: 134 ILGDRVQITSGPLSGLEG-VLMHFRSEFRVVVSIGMIGQSVSIEVLRDEI 182 >gi|319642711|ref|ZP_07997355.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] gi|317385646|gb|EFV66581.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] Length = 188 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK +R P Sbjct: 24 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 74 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 75 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTE 134 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 135 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 187 >gi|160941421|ref|ZP_02088757.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC BAA-613] gi|158435631|gb|EDP13398.1| hypothetical protein CLOBOL_06313 [Clostridium bolteae ATCC BAA-613] Length = 160 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 14/165 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+VQV + EK L + + P E G E FPGY Sbjct: 3 WYVVQVRTGEEKDIAA---------KLTDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V ++ Y+ +K P ++ L ++E ++ P E Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLLSG---TLTYLEAEWIRLLAGQGGRPLEPTLMRETE 110 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 G + + G +F + +D+ R +E+ I G V+L Sbjct: 111 EG--LEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLG 153 >gi|260174451|ref|ZP_05760863.1| putative transcriptional regulator [Bacteroides sp. D2] gi|315922718|ref|ZP_07918958.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696593|gb|EFS33428.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 189 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAIVRICHEKKTGE----RLTKMGIEN-----FLPIQQEVHQWSDRRKIVDRVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + + ++ + L P+ + D ++ ++ + + S Sbjct: 75 PMMIFVHVDLQEQKEVLTLSSISRYLVLRGESTPAIIPDQQMSRFKFMLDYSDETISLST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE++ V GP A G + +V+ KS+V V + + G Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174 >gi|237714513|ref|ZP_04544994.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406377|ref|ZP_06082926.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643258|ref|ZP_06721084.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294806451|ref|ZP_06765292.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] gi|229445282|gb|EEO51073.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355080|gb|EEZ04171.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641381|gb|EFF59573.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CC 2a] gi|294446314|gb|EFG14940.1| transcription termination/antitermination factor NusG [Bacteroides xylanisolvens SD CC 1b] Length = 196 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAIVRICHEKKTSE----RLTKMGIEN-----FLPIQQEVHQWSDRRKVVDRVLL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + ++ L P+ V D ++ ++ + + S Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVVPDQQMLRFKFMLDYSDETISMST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GER+ V GP A G + +V+ KS+V V + + G Sbjct: 135 SPLAPGERIRVIKGPLAGLEGELVHVNG-KSKVAVRLTMLG 174 >gi|226497218|ref|NP_001151355.1| transcription termination factor nusG family protein [Zea mays] gi|195646054|gb|ACG42495.1| transcription termination factor nusG family protein [Zea mays] Length = 336 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 53/224 (23%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 P+W++V+V V+ + +SR + +I PS +V + G + Sbjct: 103 PQWWLVRVSMAPGTDYVDLLTKAISRR-YSEVPFKIYNPSIQVKRRLKSGAISVKSKPLH 161 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113 G V + + +++ I+DT GF+G + P P+ E+E I+ + + Sbjct: 162 AGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEKEE 221 Query: 114 VQRPVSSVF-------------------------------------------FEVGERVC 130 +R F G V Sbjct: 222 QERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGATVH 281 Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V GPFA F G + V+ + + V++ +FG+ + V+L ++Q+E Sbjct: 282 VLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIE 325 >gi|167763647|ref|ZP_02435774.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC 43183] gi|167698941|gb|EDS15520.1| hypothetical protein BACSTE_02022 [Bacteroides stercoris ATCC 43183] Length = 206 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EKK + RL+ G++ +P + + R+ +R P Sbjct: 17 QWLVAYVQSCLEKKTAQ----RLAAMGIE-----CYLPVQSEIRQWSDRRKRVDRLVIPM 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + D +++ ++ + + + S Sbjct: 68 MIFVHVTPQERPLPLSLQAVSRYMVLRGESTPAVIPDEQMDRFRFMLDYSPEAVEMCSAP 127 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP A G + V+ KS+V V + + G V++ VEK Sbjct: 128 LAPGDAVKVIKGPLAGLEGELITVNG-KSKVAVRLDMLGCAH-VDVPIGFVEK 178 >gi|149910552|ref|ZP_01899191.1| putative transcriptional activator RfaH [Moritella sp. PE36] gi|149806395|gb|EDM66368.1| putative transcriptional activator RfaH [Moritella sp. PE36] Length = 174 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 10/172 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ E + L + E P+ V + + + E FP Sbjct: 6 KDWYLLYCK-GKE--------EPRALINLKNQGIESFYPTMTVEKKLRNKLICQEIAIFP 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + +++I+ T VI F+ G N + V + + + + Sbjct: 57 NYLFVAIDKNTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTV 116 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F GE V + DG F I + D R + + + T + +A +++ Sbjct: 117 FSEGETVIIQDGAFKGIEAIYQCKDG-LERSMLLINLINHSTTMSVANGEIK 167 >gi|146298121|ref|YP_001192712.1| NusG antitermination factor [Flavobacterium johnsoniae UW101] gi|146152539|gb|ABQ03393.1| transcription antitermination protein nusG [Flavobacterium johnsoniae UW101] Length = 154 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V EKK E L + E P V RK E F Sbjct: 1 MNWYVVYTKPKWEKKVAE---------KLTQIGIECYCPLITQVKQWSDRKKKVEMPLFN 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV I+ D+ + ++ +L P+ V D EI I N ++A+ +S Sbjct: 52 SYVFIQIEDADRNSVF--EVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQ 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +VG+++ + G F++ N IV+ V + + +E Sbjct: 110 IQVGDKIKLETGAFSNQNAIVQEVSKTHYILVLE 143 >gi|295106883|emb|CBL04426.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b] Length = 172 Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 6/171 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++QV E+ E R+S L+ E S +++ +KG FPGY Sbjct: 7 WHVLQVAPGQERSMAE----RVSSLAGPDLLRECFPLSYQLLKKQKGTWRLVTEVMFPGY 62 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + D V +K + LG G+ +T E + A +S E Sbjct: 63 VFLSTGDIDAVRERLKLSTSFARLLGAGDAIFSLTSEEAAFVSEFGGADHVVGMSQGVIE 122 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G V V GP G+V+ +D K +++V + + V + K Sbjct: 123 DGRTV-VRSGPLRGREGLVRKIDRHKRVAYLDVGLLDQA-RVRVGLEITRK 171 >gi|254885039|ref|ZP_05257749.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837832|gb|EET18141.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 166 Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK ER P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165 >gi|150005199|ref|YP_001299943.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|149933623|gb|ABR40321.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] Length = 166 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK +R P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 113 PLAPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165 >gi|153806651|ref|ZP_01959319.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185] gi|149131328|gb|EDM22534.1| hypothetical protein BACCAC_00921 [Bacteroides caccae ATCC 43185] Length = 188 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RW + V + EKK E RL++ G+++ +P ++ V R+ +R Sbjct: 24 SKRWLVAIVRIHHEKKTSE----RLTKMGVEN-----FLPIQQEVHNWSDRRKVVDRVIL 74 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P + + ++ L P+ + D ++ ++ + + S Sbjct: 75 PMMIFVHVDPQEQKEVLTLSAISRYMVLRGESTPAVIPDQQMLRFKFMLDYSDETICMST 134 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GE++ V GP A G + +++ KS+V V + + G Sbjct: 135 SPLAPGEKIRVIKGPLAGLEGELVDMNG-KSKVAVRLTMLG 174 >gi|116329514|ref|YP_799234.1| transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329829|ref|YP_799547.1| transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122258|gb|ABJ80301.1| Transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123518|gb|ABJ74789.1| Transcription antiterminator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 179 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY + EKK + R E +P R E +P Y Sbjct: 10 WYALYTNPRAEKKLKRLLQERK---------IECFLPLISKKKKWSDRWKVVEEPMYPSY 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +K ++ P F+ P + D ++ I +E R + Sbjct: 61 IFVKISFFQDRVKILQ-LPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQER 119 Query: 125 --VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+++ + +GPFA F + EK + V+ +T V L ++ Sbjct: 120 LLPGKKILIQEGPFAGFKAEIIQRKNEKQ-IIVKFPGMNLMTSVTLDIKTLK 170 >gi|88608554|ref|YP_506561.1| putative transcription termination/antitermination factor NusG [Neorickettsia sennetsu str. Miyayama] gi|88600723|gb|ABD46191.1| putative transcription termination/antitermination factor NusG [Neorickettsia sennetsu str. Miyayama] Length = 176 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W +++V S E K + I R V ++ P+ + RF PGY Sbjct: 12 WCVLRVRSGSESKVCDLIKSRC-----SDEVVDLFSPALVKFDASASK------RFLPGY 60 Query: 65 VLIKAVMTDKV----YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V +K V FL +P ++D +I+ + N + + P S Sbjct: 61 VFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLSPEVTPESG 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG RV + F + G V +DE S+ V++V G+ V +Q++ + Sbjct: 121 K-ISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQLKLV 175 >gi|224023977|ref|ZP_03642343.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM 18228] gi|224017199|gb|EEF75211.1| hypothetical protein BACCOPRO_00694 [Bacteroides coprophilus DSM 18228] Length = 175 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 16/178 (8%) Query: 1 MTP-RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M WY + V + EKK E + + G++H + + + +K + V Sbjct: 1 MEKENWYAMYVRMHHEKKVAEKL----GQMGVEHYLPVQEVVRQWSDRRKKLQVVVIPMM 56 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKV--IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 F +++ P V P+ + D E++ ++ + + Sbjct: 57 IFIR------ASEQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAV 110 Query: 118 VS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+++ V GP A +G + +D KS+V V + G VE+ VE Sbjct: 111 HFINTPLAPGQKIRVIKGPLAGLDGELTEIDG-KSQVMVRIEQLGYA-SVEMPVGYVE 166 >gi|171910013|ref|ZP_02925483.1| NusG antitermination factor [Verrucomicrobium spinosum DSM 4136] Length = 158 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96 E P R KV FP Y + V ++ + +K T VI +G G +P+ Sbjct: 8 ETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYSEA-HRAVKHTHNVIRIVGFGGDPA 66 Query: 97 PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 P+ D + + + EVG+ V V++GP G+V+++ + RV + Sbjct: 67 PIPD-LTIENLREEMQGAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKLL 125 Query: 157 VVIFGRVTPVEL 168 + GR + VE+ Sbjct: 126 LEFLGRQSLVEV 137 >gi|237711067|ref|ZP_04541548.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454911|gb|EEO60632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 166 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK ER P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDAAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165 >gi|222149046|ref|YP_002550003.1| transcription antitermination protein [Agrobacterium vitis S4] gi|221736031|gb|ACM36994.1| transcription antitermination protein [Agrobacterium vitis S4] Length = 220 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 19/180 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV--NSERRFF 61 RW + + S E+ +++ + P ER + RK ER F Sbjct: 51 RWVVARCKSGLEQVIRDALAE---------QGIDCWCPCERRRLPPRRRKPALVVERPLF 101 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+ ++ + ++ Y + ++ +G P + ++ + + +AA +R + + Sbjct: 102 RGYLFVRVIPDNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERRHMDAG 161 Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++V + GPFA F V+ V ++ +V V+V +FG ++ V + VE I Sbjct: 162 DVPPMPDMLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVG---VEAI 218 >gi|319952677|ref|YP_004163944.1| transcription antitermination protein nusg [Cellulophaga algicola DSM 14237] gi|319421337|gb|ADV48446.1| transcription antitermination protein nusG [Cellulophaga algicola DSM 14237] Length = 157 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 13/155 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V V S EKK E + E+ P + V RK E F Sbjct: 1 MNWYVVYVQSKKEKKVAEILQKM---------QIEVYCPLIKEVKQWSDRKKTIESPLFK 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV ++ + DK + D P V+ +L P+ V D EI I +E ++ Sbjct: 52 SYVFVR--LHDKERSNVFDVPGVVRYLFWLGQPAIVRDEEIAIIKKWLEDDTIEEITLHK 109 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ + + +GP I++ V K R+ + + Sbjct: 110 LLPGDEILIKNGPLKDKKAIIQEV--GKKRIRLAI 142 >gi|255691805|ref|ZP_05415480.1| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260622523|gb|EEX45394.1| putative transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 191 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 12/176 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW + QV EKK E RL++ G+++ +P +R + R+ + P Sbjct: 27 KRWLVAQVRIYHEKKTSE----RLTKMGIENY-----VPVQRKTHLWSDRRKQIDHIVIP 77 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 + ++ ++ + L P+ + D+++E ++ + + S Sbjct: 78 MKIFVRVDAQEQKDVLMLSAVSRYMVLHGESAPAVIPDTQMEKFKFMLDYSEEAVNMSNT 137 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 GE+V V GP G + ++ K+++ V + + G V++ +E++V Sbjct: 138 PLSPGEKVRVIKGPLRGLEGELVTLNG-KTKIAVRLDMLGCA-SVDMPVGYIERVV 191 >gi|212694663|ref|ZP_03302791.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855] gi|212663164|gb|EEB23738.1| hypothetical protein BACDOR_04194 [Bacteroides dorei DSM 17855] Length = 166 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + V + EKK E RL+ +++ +P + + RK ER P Sbjct: 2 KKWLVAYVRLHHEKKTAE----RLTAMNIEN-----FLPVQEEIRQWTYRKKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSV 121 + + + ++ L P+ + D ++E ++ + + + + Sbjct: 53 MMIFVHVDVAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCAA 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE + V GP G + VD K++V V + + G V++ VEK+ Sbjct: 113 PLVPGELIRVVKGPLKGLEGELVEVDG-KAKVVVRLDLLGCA-GVDMPVGFVEKM 165 >gi|84393780|ref|ZP_00992527.1| transcriptional activator RfaH [Vibrio splendidus 12B01] gi|84375577|gb|EAP92477.1| transcriptional activator RfaH [Vibrio splendidus 12B01] Length = 168 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ +K+A + + + E P V V +G++ + FP Sbjct: 2 KRWYLLYCKRGDQKRAQQHLE---------NQGVECFYPQIDVKKVVRGKEKQVKEPLFP 52 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ ++ + T++ T V+ F+ G P V + + + P Sbjct: 53 SYIFVRFDYEQGPSFTTVRSTRGVVDFIKFGARPHEVQGDLVYELKEFEKCCEDEPEECC 112 Query: 122 F-FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 FE G+ V ++ G FA I D E +R + V + +V P+ + ++ Sbjct: 113 VEFESGQVVKINSGQFAGVEAIFHQKDGE-ARSIMLVKMISKVVPISIENEALQ 165 >gi|139436873|ref|ZP_01771033.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC 25986] gi|133776520|gb|EBA40340.1| Hypothetical protein COLAER_00003 [Collinsella aerofaciens ATCC 25986] Length = 167 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 R+ R + E+ P + G V++ + FPGY++ V + Sbjct: 2 RERIERMVPASAMQELFYPQYQTEIKVHGEWVSTTKPLFPGYLICDTADPRTVQQYLLRM 61 Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142 L P+ E + I + + S + G++V V+ GP G+ Sbjct: 62 DDFARVLSQDGQFVPLAKEETQLIGSFTNRGDRVVPMSEALKDGDQVVVTAGPLLGHEGL 121 Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAY 170 +K ++ KS ++E+ + GR + Sbjct: 122 IKTINRRKSTAYLELDLCGRRVTTRVGL 149 >gi|83814623|ref|YP_444769.1| putative transcriptional regulator [Salinibacter ruber DSM 13855] gi|294506613|ref|YP_003570671.1| transcription antitermination protein nusG [Salinibacter ruber M8] gi|83756017|gb|ABC44130.1| putative transcriptional regulator [Salinibacter ruber DSM 13855] gi|294342941|emb|CBH23719.1| Transcription antitermination protein nusG [Salinibacter ruber M8] Length = 229 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 18/174 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + EKKA + + R E+ +P + + RK F Y Sbjct: 61 WRVFYTRARAEKKAEQRLEDRR---------IEVLVPKKTEMRQWSDRKKEVTEPLFRNY 111 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + D++ T ++ + P+ + + + + + + + + Sbjct: 112 LFARVGEKDRIRVL--RTNGIVRCVHFDGEPAQLREDTAQRLKKIQAVPDRLSTADLRPQ 169 Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVE--VVIFGRVTPVELAYNQVE 174 VG V ++DGP G V + R +V V + VE+ VE Sbjct: 170 VGSTVTITDGPERLRGLTGEVLE---HRGRTYVLLRVKAVRQAVKVEVNAKWVE 220 >gi|160889704|ref|ZP_02070707.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492] gi|317478746|ref|ZP_07937899.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|156860696|gb|EDO54127.1| hypothetical protein BACUNI_02131 [Bacteroides uniformis ATCC 8492] gi|316905081|gb|EFV26882.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 179 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 12/174 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EKK E RL G++ +P + + R+ +R P Sbjct: 15 QWLVAYVQSCLEKKTAE----RLKAMGVE-----YYLPIQSEIRQWSDRRKKVDRLVIPM 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + + ++E ++ + + + S Sbjct: 66 MIFVHVTPQERPLPLTLQAISRYMVLRGESRPAVIPEEQMERFRFMLDYSPEAVEICSTP 125 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V GP A G + + KS+V V + + G V++ VE+I Sbjct: 126 LAAGDAVKVIKGPLAGLEGELVMI-GGKSKVAVRLDMLGCAH-VDMPIGYVERI 177 >gi|222148453|ref|YP_002549410.1| Transcription antiterminator protein [Agrobacterium vitis S4] gi|221735441|gb|ACM36404.1| Transcription antiterminator protein [Agrobacterium vitis S4] Length = 218 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 16/165 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP--SERVVSVRKGRKVNSERRFF 61 RW + S E+ +S+ D E P + R + V +R F Sbjct: 49 RWVVASCKSGMEQVIRDSL---------DQQGIECWCPCERHKWPPRRGKQAVEIQRALF 99 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+ +K + ++ + + K+ G +G P + + + +M + A ++ + Sbjct: 100 RGYLFVKVIPDNEAFVGLMLASKLRGLMGKDGKPHLMPEPLMRQLMLSAKKAERKHMDVG 159 Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G++V + GPFA F V+ V ++ +V V+V +FG Sbjct: 160 DVPPMPDVLGKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFG 204 >gi|242037557|ref|XP_002466173.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor] gi|241920027|gb|EER93171.1| hypothetical protein SORBIDRAFT_01g002830 [Sorghum bicolor] Length = 334 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 53/226 (23%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 P+W++V+V V+ + +SR + +I PS +V + G + Sbjct: 101 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPEVTFKIYNPSIQVKRRLKSGAISVKSKPLH 159 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVEAA 113 PG V + + +++ I+DT GF+G + P P+ E+E I+ + + Sbjct: 160 PGLVFMHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPIDEVESIIREEKEE 219 Query: 114 VQRPVSSVF-------------------------------------------FEVGERVC 130 +R F G V Sbjct: 220 QERVDREFEEMENMGNVEPFSKPVEESELMLMNKIKKQFKKSSLNGGTRHSAFSPGATVH 279 Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V GPF F G + V+ + + V++++FG+ + V+L ++Q+E I Sbjct: 280 VLSGPFEDFTGSILEVNRKNKKATVQLILFGKESFVDLDFDQIEAI 325 >gi|53714067|ref|YP_100059.1| putative transcriptional regulator UpxY-like protein [Bacteroides fragilis YCH46] gi|60682261|ref|YP_212405.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253564711|ref|ZP_04842167.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766312|ref|ZP_06094353.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216932|dbj|BAD49525.1| putative transcriptional regulator UpxY homolog [Bacteroides fragilis YCH46] gi|60493695|emb|CAH08484.1| putative transcriptional regulator (pseudogene) [Bacteroides fragilis NCTC 9343] gi|251946176|gb|EES86553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253980|gb|EEZ25445.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163738|emb|CBW23292.1| putative transcriptional regulator (pseudogene) [Bacteroides fragilis 638R] Length = 172 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W V EKK RL+ G++ +P + + R+ ER P Sbjct: 2 KSWLAAYVRLYHEKKT----RDRLTAMGIES-----FLPVQEEIHQWSDRRKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 + + ++ + L P+ + D ++E ++ + + V S Sbjct: 53 MMIFVHVDPAERAEVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVCSS 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP A G + +D KS+V V + + G V++ VE++ Sbjct: 113 PLAPGEQVRVIKGPLAGLEGELVTIDG-KSKVAVRLDMLGCAH-VDMPVGFVERV 165 >gi|323486156|ref|ZP_08091485.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum WAL-14163] gi|323693006|ref|ZP_08107226.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum WAL-14673] gi|323400482|gb|EGA92851.1| hypothetical protein HMPREF9474_03236 [Clostridium symbiosum WAL-14163] gi|323502887|gb|EGB18729.1| hypothetical protein HMPREF9475_02089 [Clostridium symbiosum WAL-14673] Length = 172 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 5/154 (3%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ S E+ + S LS+ LD S + G R FP Y Sbjct: 6 WYVLHCKSGQEETIIRSCKHHLSKPALDD----AFQFSYERMKKYLGEWHVDTYRMFPDY 61 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V +++ + + +K + L + PV E I +S Sbjct: 62 VFLQSSRPELLLKELKQYRDITDVLAQEDMLLPVQPEEEAMIRTLCGERHHMGLSRGLVR 121 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 G +GP A +++ +D K + + Sbjct: 122 NG-SFRAVNGPLAGKEALIRKLDLHKRIAVLNLK 154 >gi|255010372|ref|ZP_05282498.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313148171|ref|ZP_07810364.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136938|gb|EFR54298.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 172 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W V EKK RL+ G++ +P + + R+ ER P Sbjct: 2 KSWLAAYVRLYHEKKT----RDRLTAMGIES-----FLPVQEEIHQWSDRRKKIERVVIP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSV 121 + + ++ + L P+ + D ++E ++ + + V S Sbjct: 53 MMIFVHVDPAERAEVLTLSSVSRYMVLRGQSTPAVIPDEQMERFRFMLDYSEEAIEVCSS 112 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V GP A G + ++ KS+V V + + G V++ VE++ Sbjct: 113 PLAPGEQVRVIKGPLAGLEGELVTING-KSKVAVRLDMLGCAH-VDMPVGFVERV 165 >gi|296447007|ref|ZP_06888941.1| NusG antitermination factor [Methylosinus trichosporium OB3b] gi|296255450|gb|EFH02543.1| NusG antitermination factor [Methylosinus trichosporium OB3b] Length = 210 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 10/160 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+++ Y + + +++ + I + + + F Sbjct: 1 MNWYVIECYPGQDFDVCRKL----AQADYNIWRPMKKI-TTTLREGPMRGRRCRSVPRFG 55 Query: 63 GYVLIKAVMT-DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 Y+ + +T + + +T G + + E + + + + Sbjct: 56 RYLFLDCELTPGRRFAISTETGVRGFLKRAGVDEPAIVPDEWMNFL--MFGKAIEDRRGI 113 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 F G RV V+ GP G+V++VD+ V + FG Sbjct: 114 VFAPGTRVTVNAGPLRGREGVVRSVDD--GTAKVILDAFG 151 >gi|284041134|ref|YP_003391064.1| NusG antitermination factor [Spirosoma linguale DSM 74] gi|283820427|gb|ADB42265.1| NusG antitermination factor [Spirosoma linguale DSM 74] Length = 160 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 13/164 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+++ S EK E + E+ P + R E F Y Sbjct: 3 WFVLYTKSRNEKIVAEKLRA---------KDIEVYCPMIKRSRQWSDRVKVVEEPLFRSY 53 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +K + ++ H + P ++ +L P+ V D+EI+ I + + + Sbjct: 54 CFVK--LDERRRHEVFSVPGLVRYLFWEGKPAIVRDAEIDSIKSMLAEVDHDLIHIKPLH 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 G ++ + G F G V D V V + V V+L Sbjct: 112 PGTQLTIKSGSFRDSIGTVVRQDG--RIVTVVLESLQMVLKVDL 153 >gi|320540297|ref|ZP_08039949.1| DNA-binding transcriptional antiterminator [Serratia symbiotica str. Tucson] gi|320029617|gb|EFW11644.1| DNA-binding transcriptional antiterminator [Serratia symbiotica str. Tucson] Length = 158 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 18/176 (10%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ +A + + + P + + +G+++ Sbjct: 1 ME-SWYLLYCKRGQLSRAQKHLKWQAVN---------CFTPIITLEKIVRGKRIAVSEPL 50 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ + T T+ T V F+ G P+ + IE + V P + Sbjct: 51 FPNYLFVLFDHT----TTLSATRGVSHFVRFGALPATIPYRVIEELQIHVGETCVDPQT- 105 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V + +G F I D E R + + + + L Q +K+ Sbjct: 106 --PQPGDTVLIVNGVFEGLCAIYTEPDGET-RSMLLLNLLHKQVSQSLDNRQFQKV 158 >gi|24212747|ref|NP_710228.1| transcription antiterminator [Leptospira interrogans serovar Lai str. 56601] gi|45655955|ref|YP_000041.1| transcription activator or transcription antitermination factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193386|gb|AAN47246.1| transcription antiterminator [Leptospira interrogans serovar Lai str. 56601] gi|45599188|gb|AAS68678.1| transcription activator or transcription antitermination factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 179 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ EKK R E +P R E +P Y Sbjct: 10 WYVLYTNPRSEKKLKRLFQERK---------IECFLPLISKKKKWSDRWKVIEEPMYPSY 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +K ++ P F+ P + + +++ + +E + + + Sbjct: 61 IFVKISFFKDRVRILQ-LPGAHHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEK 119 Query: 125 --VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G++V + +GPFA F + E+ V V+ VT V L ++ Sbjct: 120 LLPGKKVLIQEGPFAGFKAEIIQRKNEEQIV-VKFPGMNLVTSVTLDIKTLK 170 >gi|94266952|ref|ZP_01290603.1| NGN [delta proteobacterium MLMS-1] gi|93452357|gb|EAT02982.1| NGN [delta proteobacterium MLMS-1] Length = 176 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 32/188 (17%) Query: 1 MTPR-----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 M + WY ++ + E ++R + + +P RVV R+ Sbjct: 1 MPKQIPSLAWYAIRTKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQV 51 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 R FPGY+ ++ + I T IG L GE+ PV D IE + + + Sbjct: 52 VFRPVFPGYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGV 111 Query: 116 RPVSSVFFE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 + E G V V+ G F SF G K V + + I R Sbjct: 112 IAPGAFQKEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVR 163 Query: 166 VELAYNQV 173 + ++V Sbjct: 164 TTVPLDRV 171 >gi|153009640|ref|YP_001370855.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188] gi|151561528|gb|ABS15026.1| NusG antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 217 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 13/176 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG--RKVNSERRFFP 62 W ++QV S E E++G E+ +P + +R+ ++ Sbjct: 51 WLVLQVMSGRELSVREALGKE---------NIEVLVPMKMGPKIRRQGREIPAKKQPVMN 101 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYVL + +++++ + V+ LG E P V+ ++ + E Sbjct: 102 GYVLARCMISNECLAGLLSFENVVSILGGYETPFLVSAEKVFVFRAKAEDGQYDYEHFHR 161 Query: 123 FEVG-ERVCVSDGPFASFNGI-VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +G + V+DGPFA V + V +EV I GR + + +E + Sbjct: 162 KFIGVKWARVADGPFAGCRAELVSGGTKGNGLVVIEVSIMGRPVAMTVPIAILEPL 217 >gi|163757089|ref|ZP_02164194.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1] gi|161322989|gb|EDP94333.1| hypothetical protein KAOT1_04250 [Kordia algicida OT-1] Length = 188 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 14/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN-SERRFFP 62 W+++ EKKA + R E+ +P + + + K R+ + FP Sbjct: 28 NWFVLYTAPRAEKKAKLELEYR---------GYEVFLPMTKSLRIWKNRQKKLIDSVLFP 78 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ +K ++ I K+ ++ G P V+ IE I + + Q Sbjct: 79 SYIFVKTD--ERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKC-MLSMDQEISVGND 135 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F GE V + +GP A +NG++ + K++ + + +V +E+ + +EK Sbjct: 136 FIEGESVRIVEGPLAGYNGVLVQ-QKSKTKFGIHLKEINQVASIEICTSALEK 187 >gi|302038023|ref|YP_003798345.1| putative transcription termination/antitermination factor NusG [Candidatus Nitrospira defluvii] gi|300606087|emb|CBK42420.1| putative Transcription termination/antitermination factor NusG [Candidatus Nitrospira defluvii] Length = 187 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 14/173 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY + S EK + + + E +P + +S RKV +E F G Sbjct: 24 HWYAISTRSRHEKLVRDRL---------AGIGVEPFLPLVKKLSQWTDRKVWTESPLFSG 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y + + H + TP + +G+ E + ++ + + + Sbjct: 75 YCFARFSL--MNSHAVLQTPGTVRIVGSL--IPESIPDEEVAAIQKLAESRRAFERHDYL 130 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V V GP G + + + + V + + V + ++V+ I Sbjct: 131 TEGAWVEVVRGPLTGLRGQLLR-KANQDCLVIRVHLIQQAATVHIDMSEVQPI 182 >gi|77361554|ref|YP_341129.1| transcriptional activator RfaH [Pseudoalteromonas haloplanktis TAC125] gi|76876465|emb|CAI87687.1| putative Transcriptional activator RfaH [Pseudoalteromonas haloplanktis TAC125] Length = 161 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+V E++A ++ + P + KGR+ + FPGY Sbjct: 4 WYLVVCKPRQEERAQVNLK---------NQGIASFFPKLTTEKLVKGRRTVKQSALFPGY 54 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + + + +K+T V GF+ G V ++NQ++A S + Sbjct: 55 VFVCLEAENGNFFAVKNTRGVSGFVTYGAAYQRVP----VELINQLKAERSHSHESQVPK 110 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V++ F + + I K D + R + + + + + ++ + KI Sbjct: 111 NGDLVSVNNESFKNIDAIYKEPDGD-MRSILFINLLNKQIEISVSNQAISKI 161 >gi|224087633|ref|XP_002308199.1| predicted protein [Populus trichocarpa] gi|222854175|gb|EEE91722.1| predicted protein [Populus trichocarpa] Length = 342 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 64/232 (27%) Query: 3 PRWYIVQV--YSNCEKKAVESIGGRLSRSGLDHLVTEITIPS-ERVVSVRKGRKVNSERR 59 P+W+IV+V E + RL + ++ PS + ++ G + Sbjct: 109 PQWWIVRVSRIRGDETS---DVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKP 165 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG--------ENPSPVTDSEIEHIMNQVE 111 FPG V + V+ +++ +++ V GF+G P PV+D ++E + Q + Sbjct: 166 IFPGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQAK 225 Query: 112 AAVQRPVSSVFFE----------------------------------------------- 124 ++ E Sbjct: 226 EEQEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGD 285 Query: 125 ---VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G V V G FA F G +K ++ + + V V +FG+ + VEL +++ Sbjct: 286 LPKTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337 >gi|317487904|ref|ZP_07946496.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] gi|316913030|gb|EFV34547.1| transcription termination factor nusG [Eggerthella sp. 1_3_56FAA] Length = 171 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y++QV E ++ R+ LV + S R++ +G FPGY+ Sbjct: 7 YVLQVVPGRE----RAMAERVKALAGPELVRDCFALSYRILKKNQGVWRLLTETMFPGYL 62 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 + + + TIK + LG + E + + + S + Sbjct: 63 FVASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDN 122 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G + + +GP +K +D K ++++ + + V + V K Sbjct: 123 GRTI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 170 >gi|325110731|ref|YP_004271799.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305] gi|324970999|gb|ADY61777.1| NGN domain-containing protein [Planctomyces brasiliensis DSM 5305] Length = 190 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 45/173 (26%), Gaps = 14/173 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY S EK + + R V+ KGR S F Sbjct: 30 ELNWYAFYTTSRQEKAFMRKLIDR--------QVSFYCPIVANKNRSPKGRVRTSHLPLF 81 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + ++ + E E + + + Sbjct: 82 SNYVFVFGDFESRI-----QAFETNCISRCLEVEDSAALHEQLKAIETLIQCGEPVTIES 136 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G V + G G V +R+ V V + + VEL +VE Sbjct: 137 RLMPGVPVRIKSGSLKGLTGTVFQ-RRGTNRLLVGVQLLQQGASVELNDWEVE 188 >gi|108761995|ref|YP_632130.1| NusG-like protein [Myxococcus xanthus DK 1622] gi|4164406|emb|CAA09920.1| NusG-like protein [Myxococcus xanthus] gi|108465875|gb|ABF91060.1| NusG-like protein [Myxococcus xanthus DK 1622] Length = 168 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 16/172 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + V N EK A + E +P+ + ++ FPGY Sbjct: 11 WVALLVRVNHEKVAAAQL---------GKHGYEFFLPTYTPPKSSGVK---AKLPLFPGY 58 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + + P VI LG P V E+E I +V + + Sbjct: 59 LFCRYQPLNPYRIV--RAPGVIRLLGGDAGPEAVPAQELEAIR-RVADSGVSSNPCDYLR 115 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+RV + +GP G + + + R V V + R VE++ Q+E I Sbjct: 116 VGQRVRIIEGPLTGLEGSLVT-SKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166 >gi|159184310|ref|NP_353481.2| transcription antitermination protein [Agrobacterium tumefaciens str. C58] gi|159139634|gb|AAK86266.2| transcription antitermination protein [Agrobacterium tumefaciens str. C58] Length = 188 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 20/183 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS--VRKGRKVNSERRF 60 W++V+ EK +++ ++ +P E + VR R Sbjct: 13 HEWFVVETKHKAEKAVEDALRKA---------GVKVFLPLETIGETVVRGRIIPAVSRPL 63 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVS 119 PGYVL+ V + I V GF+G +P V+D E+ + Sbjct: 64 LPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMVHPHRVSDEEMNRFKAFGDDETAPDVKH 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK----SRV----HVEVVIFGRVTPVELAYN 171 F+ G++V GPFASF G + + +++ RV V V +FG+V+ +E Sbjct: 124 CEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAPLA 183 Query: 172 QVE 174 +E Sbjct: 184 LLE 186 >gi|226943708|ref|YP_002798781.1| transcriptional activator RfaH [Azotobacter vinelandii DJ] gi|226718635|gb|ACO77806.1| transcriptional activator RfaH [Azotobacter vinelandii DJ] Length = 153 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 16/167 (9%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 Q +++A +++ E P + G FPGY+ I+ Sbjct: 2 QCKPRQDERAEDNLKR---------QGYEYFRPQCLRERLMHGALRVQSESLFPGYLFIR 52 Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER 128 D + ++ T V + G+ P V+D + + ++E++ + + G+R Sbjct: 53 LA-ADANWAPLRSTRGVSRLVSFGDMPLSVSDELVAELQRRIESSPE-----PALKPGDR 106 Query: 129 VCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 V + G F + I +D E RV + + + R + L + K Sbjct: 107 VRIIAGSFTELDAIFLALDGE-ERVTLLMRLLHREHRLSLPLADIRK 152 >gi|261886300|ref|ZP_06010339.1| transcription antitermination protein NusG [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 50 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 33/47 (70%) Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 V+ G FA+FNG V+ D ++ + V IFGR TPVE+ Y+QVEKIV Sbjct: 4 VTKGRFANFNGTVEEYDMVHGKLRLNVSIFGRSTPVEILYSQVEKIV 50 >gi|94265144|ref|ZP_01288908.1| NGN [delta proteobacterium MLMS-1] gi|93454383|gb|EAT04684.1| NGN [delta proteobacterium MLMS-1] Length = 169 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 27/181 (14%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+++ + E ++R + + +P RVV R+ R FP Sbjct: 1 MAWYVIRAKPHKE---------EMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ ++ + I T IG L GE+ PV D IE + + + + Sbjct: 52 GYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQ 111 Query: 123 FE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G V V+ G F SF G K V + + I R + ++ Sbjct: 112 KEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDR 163 Query: 173 V 173 V Sbjct: 164 V 164 >gi|329964369|ref|ZP_08301450.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328525418|gb|EGF52466.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 180 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EKK + RL+ G++ +P + + R+ ER P Sbjct: 16 QWLVAYVQSCLEKKTAQ----RLTAMGIE-----CYLPVQNEIHQWSDRRKKVERLVIPM 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + + ++E ++ + + + S Sbjct: 67 MIFVHVSPQERPLPLTLQAVSRYMVLRGESTPAIIPEEQMERFRFMLDYSPEVVEICSTP 126 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP A G + ++ KS+V + + + G V++ VEK Sbjct: 127 LAQGDAVKVIKGPLAGLEGELVTLNG-KSKVAIRLDMLGCAH-VDMPIGFVEK 177 >gi|295132413|ref|YP_003583089.1| NusG antitermination factor [Zunongwangia profunda SM-A87] gi|294980428|gb|ADF50893.1| NusG antitermination factor [Zunongwangia profunda SM-A87] Length = 164 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 13/157 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ E K + + + E+ P + + RK F Y Sbjct: 3 WYVIYTKPKSEIKTAQRLEK---------IGVEVFCPVKNEIRQWSDRKKKFTVPLFTSY 53 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + ++ D+ + + P V +L P+ V D+EI+ I V + + + Sbjct: 54 LFVRLEEKDRA--IVFEVPGVNNYLFWLGQPAIVRDNEIDIIKKWVNDDAVEDIQLMHLK 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G+R+ + G F +V+ + K R + + G Sbjct: 112 AGDRLIIKKGAFKDREAVVQKI--GKRRCKLVLPTMG 146 >gi|168698398|ref|ZP_02730675.1| transcription antitermination protein nusG [Gemmata obscuriglobus UQM 2246] Length = 177 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 11/174 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW ++ + EK E + + +P VS K + ++ FPG Sbjct: 12 RWAALRTAARWEKAVTEQLAAA---------GVPVFLPLLTRVSRTKSKTQTAQLPVFPG 62 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV K+I L +P + D + + A Q V+ Sbjct: 63 YVFCGEREYRDSTRVPPSCRKLIAQLLRAPDPDQLKD--ELRSVADLLANRQLLQERVYG 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 +G+ V + GP A G + + RV +EV G + +EK V Sbjct: 121 VIGDTVRIVGGPLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEKAV 174 >gi|126662220|ref|ZP_01733219.1| putative transcriptional regulator [Flavobacteria bacterium BAL38] gi|126625599|gb|EAZ96288.1| putative transcriptional regulator [Flavobacteria bacterium BAL38] Length = 154 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 12/152 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY + E+K + L L P RK P Sbjct: 1 MNWYALYTKPRNEQKVAQ---------KLQALGIIAYCPLVLSSKQWSDRKKKVLVPLLP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 YV ++ ++ + V+ ++ P+ + +EIE + Q+++++ + Sbjct: 52 SYVFVQIE--EQNRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMT 109 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 + E + +++G F + IV + K R+ Sbjct: 110 TWRSNETIQITEGVFKGQDAIVDKISTNKVRL 141 >gi|291544741|emb|CBL17850.1| Transcription antiterminator [Ruminococcus sp. 18P13] Length = 186 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 12/170 (7%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y++Q + AV + L P + R G +E FPGYV Sbjct: 3 YVLQTKPGQDDNAVRDLER---------LGYRSYAPRRIALHRRGGTWWEAEYPVFPGYV 53 Query: 66 LI-KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +TD YH I VI FLG G P P+ + E E+I S V Sbjct: 54 FLDDLELTDVDYHRIMPCVGVIRFLGHGA-PEPLPEHEAEYIRWLHNGGKPIAPSEVRIR 112 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G +S+ G V + + R + + I G++ + LA V+ Sbjct: 113 PDGSMQYVSGLISSYAGRV-EHNSRQRRATIRISIAGKLHRITLAVRYVQ 161 >gi|51247052|ref|YP_066935.1| related to transcriptional activators [Desulfotalea psychrophila LSv54] gi|50878089|emb|CAG37945.1| related to transcriptional activators [Desulfotalea psychrophila LSv54] Length = 193 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 13/174 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY ++ + E +++ + +P R FFPG Sbjct: 28 HWYAIRTKNKKE---------EVAKFNYQRQGYTVYLPLLRKTVHHARSTTEKLVAFFPG 78 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE---AAVQRPVSS 120 Y+ + ++ + I T +G L G++ + I + + + + + + + Sbjct: 79 YLFLNLAPAEQNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIK 138 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G V V+ S +V ++ ++ V V + I R ++ ++++ Sbjct: 139 ENLTPGSVVTVNIPGLESVEAVVYSIRGSEN-VDVLLNILSRQVKTTVSLDRIK 191 >gi|94267031|ref|ZP_01290674.1| NGN [delta proteobacterium MLMS-1] gi|93452265|gb|EAT02911.1| NGN [delta proteobacterium MLMS-1] Length = 169 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 27/181 (14%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+++ + E +R + + +P RVV R+ R FP Sbjct: 1 MAWYVIRAKPHKE---------ETARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ ++ + I T IG L GE+ PV D IE + + + + Sbjct: 52 GYLFLRLNPETCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQ 111 Query: 123 FE---VGERVCVS-------DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 E G V V+ G F SF G K V + + I R + ++ Sbjct: 112 KEKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDR 163 Query: 173 V 173 V Sbjct: 164 V 164 >gi|312113215|ref|YP_004010811.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311218344|gb|ADP69712.1| NusG antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 172 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 11/166 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W ++ + + E AVE++ P R ++ R FPG Sbjct: 11 KWVVLTTHPHRENFAVENLAR---------QDFTAYCPMTVKHVRHARRAYDAPRPLFPG 61 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV ++ + I T V L G++P+ + IE + + V Sbjct: 62 YVFVEHQSAFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGV-ISKPEAPL 120 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + G+ V +S GPF G + E+ RV + + + + T V++ Sbjct: 121 KAGQTVTISGGPFDGLVGQILEF-RERDRVLLLLDLLNQQTRVQVE 165 >gi|325833254|ref|ZP_08165760.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] gi|325485636|gb|EGC88104.1| transcription termination/antitermination factor NusG [Eggerthella sp. HGA1] Length = 164 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 6/168 (3%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 +QV E+ E R+ LV + S ++ +G FPGY+ + Sbjct: 2 LQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLLTETMFPGYLFV 57 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 + + TIK + LG + E + + + S + G Sbjct: 58 ASDDIEAFEKTIKRSTAFARLLGAERRAFALRPEEASFVHDFGGPSHVVGFSRGTIDNGR 117 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + + +GP +K +D K ++++ + + V + V K Sbjct: 118 TI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 163 >gi|160882085|ref|ZP_02063088.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483] gi|156112520|gb|EDO14265.1| hypothetical protein BACOVA_00023 [Bacteroides ovatus ATCC 8483] Length = 152 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 10/139 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + RWY+ V + EKK E RL + G+++ +P ++ V R+ E Sbjct: 23 SKRWYVALVRMHHEKKVAE----RLDKMGIEN-----FVPVQQEVHQWSDRRKVVESVLL 73 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-S 120 P V + A ++ T + +P+ + D ++ ++ + + S Sbjct: 74 PMMVFVHADPKERKEVLSFSTVSRYMVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNS 133 Query: 121 VFFEVGERVCVSDGPFASF 139 GE+V V GP Sbjct: 134 APLARGEKVRVIKGPLTDL 152 >gi|115456311|ref|NP_001051756.1| Os03g0825500 [Oryza sativa Japonica Group] gi|15042831|gb|AAK82454.1|AC091247_21 putative transcription factor [Oryza sativa Japonica Group] gi|108711839|gb|ABF99634.1| KOW motif family protein, expressed [Oryza sativa Japonica Group] gi|108711840|gb|ABF99635.1| KOW motif family protein, expressed [Oryza sativa Japonica Group] gi|113550227|dbj|BAF13670.1| Os03g0825500 [Oryza sativa Japonica Group] gi|125546265|gb|EAY92404.1| hypothetical protein OsI_14139 [Oryza sativa Indica Group] Length = 330 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 53/226 (23%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 P+W++V+V V+ + +SR L +I PS +V + G + Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRR-YPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTG----------------------------- 92 PG V + + +V+ I+DT GF+G Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222 Query: 93 -----------------ENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVC 130 E+ + + +MN+++ ++P+S F G V Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282 Query: 131 VSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V GPF F G + V+ + + +++ +FG+ + V+L ++Q+E + Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328 >gi|221134306|ref|ZP_03560611.1| transcriptional activator RfaH [Glaciecola sp. HTCC2999] Length = 176 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 13/171 (7%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ + E +AV L + + P + V +G++ E FP Y Sbjct: 17 WYLLYCKAKEEGRAV---------MHLANQGIDAFYPKANITKVLRGKRQTVEEALFPNY 67 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V + + +++ T VIGF+ G++ V+ + I+ V+ + S Sbjct: 68 VFAQLDHDVHNFTSVRSTRGVIGFVKQGKDYQKVSQALID---VFVQCDTVDKLDSALPT 124 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V + + + I + E R + + + + + + +Q K Sbjct: 125 KGDNVMLQHPQYQNIPAIYQEPKGEN-RAILLIHLLNKPVELVVDNSQFTK 174 >gi|168031471|ref|XP_001768244.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680422|gb|EDQ66858.1| predicted protein [Physcomitrella patens subsp. patens] Length = 719 Score = 64.3 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 44/206 (21%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRS--GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V E +A E + + ++ G+ + V +IPS ++ GR +S R +P Sbjct: 119 WYMVSTPKKAEHEAAEQLHIQFAQMFPGMKYEVLTPSIPS--FRKLKSGRYSDSRVRLYP 176 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS---------EIEHIMNQVEAA 113 G +LI+ VM VY+ I+ ++ F GT + V+D EIE + ++E A Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236 Query: 114 VQR-------------------------------PVSSVFFEVGERVCVSDGPFASFNGI 142 P E G + ++ GPF + GI Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296 Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVEL 168 V VD E V + VVIFG+ T EL Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAEL 322 >gi|170744011|ref|YP_001772666.1| NusG antitermination factor [Methylobacterium sp. 4-46] gi|168198285|gb|ACA20232.1| NusG antitermination factor [Methylobacterium sp. 4-46] Length = 225 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 11/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + + V + + GL + R+ Sbjct: 52 WLVARTRPRWAPRVVRDL----AALGLCAFEAREEVERVGPDGARRR----VAVPLLHRL 103 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI---EHIMNQVEAAVQRPVSSV 121 V + + + G + + + + V +V Sbjct: 104 VFLGLRDDADLARAEAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGEDEAVEAV 163 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +G+ V V+ GP A+ G ++ VD + R V + +FGR T V+LA +V Sbjct: 164 LLALGDAVRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215 >gi|313202886|ref|YP_004041543.1| nusg antitermination factor [Paludibacter propionicigenes WB4] gi|312442202|gb|ADQ78558.1| NusG antitermination factor [Paludibacter propionicigenes WB4] Length = 158 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 20/175 (11%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ S EK RL G++ + P R E F Sbjct: 1 MNWYLLYTASRAEKLV----EQRLKAEGVETYLPLHLSP-----RRWSDRVALVELPLFS 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ ++ TD++ + V+ + P+ + +EI+ I +E A + + Sbjct: 52 SYIFVRT--TDEILRGLVRVNGVLRIIFYNARPAIIKPTEIDSIKLFIEKAKGKICT--- 106 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQVEKI 176 F + + V ++ GP + +G V V +E + + + IF V + NQV KI Sbjct: 107 FGLNDEVQIACGPLKNIDGTVTKVGKEYIILQIAQIGIF-----VSVKLNQVVKI 156 >gi|311747951|ref|ZP_07721736.1| NusG antitermination factor [Algoriphagus sp. PR1] gi|126574924|gb|EAZ79282.1| NusG antitermination factor [Algoriphagus sp. PR1] Length = 170 Score = 63.9 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 11/144 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +W+++ S EKK + + E+ +P + RK E+ F Sbjct: 3 ELKWFVMYTASRSEKKVAKRLRENGK---------EVYLPIIEEIRQWSDRKKKVEKPLF 53 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GYV +K P + F+ + V D E+E I + V Sbjct: 54 NGYVFVKTTRNQL--WECLQVPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGS 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKN 145 E GE+V V G G V Sbjct: 112 VIEAGEKVEVIGGALQHMTGEVIE 135 >gi|325103553|ref|YP_004273207.1| NGN domain-containing protein [Pedobacter saltans DSM 12145] gi|324972401|gb|ADY51385.1| NGN domain-containing protein [Pedobacter saltans DSM 12145] Length = 180 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 12/146 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + +W+++ + EKK + + P ++V S R E F Sbjct: 18 SKQWFVIYTRTRWEKKVDTLLKQ---------KGIDSYCPLKKVRSKWADRIKTVELPLF 68 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 YV + +++ ++ T VI F+ P+ V + EIE I + + + VSS+ Sbjct: 69 TSYVFVNINYKEEL--KVRQTHGVINFIYYMGKPAVVRNQEIEEIQDILVKNREIEVSSI 126 Query: 122 -FFEVGERVCVSDGPFASFNGIVKNV 146 +G+RV + +G + G + V Sbjct: 127 RDLNIGDRVLIKNGALFNQEGNIVQV 152 >gi|295116148|emb|CBL36995.1| Transcription antiterminator [butyrate-producing bacterium SM4/1] Length = 201 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 28/184 (15%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E E I + + L + G+ ++ FPGY Sbjct: 2 WYVIQTETGKE----EEILLFMRNMIPEELCRHCFLIWAEWPRRAGGQWNIVKKNMFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + ++++ +K P + LG +E E + Sbjct: 58 IFAETEEPEELFQRLKKVPGLTKLLGGDRCEFIPLGAEEERFFCMIGEKEGNCTGENRAA 117 Query: 125 VG------------------------ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 G ++ + +G SF + V+ K V V + Sbjct: 118 KGRAGTNKRKWDCLSVRPSTVRVDEEGKLEILNGALRSFKEEIVRVNLHKRYAVVRVRML 177 Query: 161 GRVT 164 G T Sbjct: 178 GEKT 181 >gi|116625224|ref|YP_827380.1| NusG antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|116228386|gb|ABJ87095.1| NusG antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 193 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ + V +L L+H E P + R+ + + + FPG Sbjct: 18 QWFALSVTPK---------LTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPG 68 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + + ++ + TP V G +G G P+PV D EI + +V + S+ + Sbjct: 69 YVFARIDVRFRLPVLV--TPGVRGIVGYGRQPAPVDDGEIFA-LRRVMQSQLPAKSAPYL 125 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+RV + +GP + G++ RV V+V + + V++ V Sbjct: 126 RTGDRVQLVEGPLSGLTGLLIQQKGAN-RVLVQVTLINQALAVDVESAWVR 175 >gi|154492599|ref|ZP_02032225.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC 43184] gi|154087824|gb|EDN86869.1| hypothetical protein PARMER_02233 [Parabacteroides merdae ATCC 43184] Length = 180 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 28/179 (15%) Query: 1 MTPR----------WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50 M + WY++ EK+ R++ G++ +P R V Sbjct: 11 MEKKELKINADKTSWYVLYTAPRAEKQV----RDRINALGVE-----CWLPLHRAPRVWS 61 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 R E F Y+ ++ TD + V + P+ V EI+ I + + Sbjct: 62 DRVKIVELPLFNSYLFVRC--TDPELRNLTRVYGVARIVYYNGKPAVVRQKEIDAIQDFL 119 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + A + + GE V + G +G VK + K+ + + + G V+L Sbjct: 120 DQASEHALC-----PGEEVEILCGAMKHVSGKVKKIK--KNHLVLYLEQLGATVCVKLD 171 >gi|237722567|ref|ZP_04553048.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448377|gb|EEO54168.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 165 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%) Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73 EKK E RLS+ G+D +P ++ + R+ + P V + + Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53 Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132 ++ T + P+ + D ++ ++ + + GE+V V Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GP + G + V KS++ V + + G Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141 >gi|29346768|ref|NP_810271.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253572224|ref|ZP_04849627.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338665|gb|AAO76465.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251837999|gb|EES66087.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 190 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW + V + EKK E RLS+ G+++ +P ++ V R+ ER P Sbjct: 25 KRWLVALVRISHEKKTSE----RLSKMGIEN-----FLPVQQEVHQWSDRRKVVERVLLP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 + + M ++ + L P+ + D ++ ++ + + S Sbjct: 76 MMIFVHVDMYEQKEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMSTT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G ++ V GP + G + V+ KS+V V + + G V++ VE + Sbjct: 136 PLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLGCAF-VDIPVGCVEPL 188 >gi|325279693|ref|YP_004252235.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324311502|gb|ADY32055.1| NusG antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 207 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 16/174 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V + EKK E RL + G+++ +P V RK GY Sbjct: 29 WYAVYTAARAEKKVKE----RLDQIGIENY-----LPLRTEYRVWSDRKKKVSVPLISGY 79 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + ++ + + TP V+ FL + +E + VE P+ + + Sbjct: 80 IFVHIK--EETFVPVLTTPGVVTFLKEKGKAVAI-PAEQIERLRFVENQADEPLEISYED 136 Query: 125 V--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G V V G A F G + + +K R+ + + G + +A + VEK+ Sbjct: 137 IPAGTLVEVVRGKLAGFQGEMVQI-RDKYRIVLRLEKLGCA-LITVAASCVEKV 188 >gi|169350049|ref|ZP_02866987.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552] gi|169293262|gb|EDS75395.1| hypothetical protein CLOSPI_00789 [Clostridium spiroforme DSM 1552] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 13/169 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ S + + V ++ R E +P + + F Sbjct: 1 MNWYVLNTLSYKKNQVVFNLNKR--------KCIEAFVPQYEYYHRKTKEYLIK--PMFT 50 Query: 63 GYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 GYV +K + ++ K + E + + A Sbjct: 51 GYVFVKTELNQLEFNSLLYKMAEEKNGVIGQLVNKETLALRKEEIRMFELLLDAYHVVRM 110 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 S + + + +GP SF + VD ++++ R V L Sbjct: 111 SQAYLQDGKAVIIEGPLKSFENNIVKVDRHNQYAYLDLSFMDRRIKVGL 159 >gi|218260979|ref|ZP_03476006.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii DSM 18315] gi|218224271|gb|EEC96921.1| hypothetical protein PRABACTJOHN_01670 [Parabacteroides johnsonii DSM 18315] Length = 180 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%) Query: 1 MTPR----------WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50 M + WY++ EK+ + I D L E +P R V Sbjct: 11 MEKKELKRNADKTSWYVLYTAPRAEKQVRDRI---------DALGIECWLPLHRTPRVWS 61 Query: 51 GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 R E F Y+ ++ TD + V + P+ V EI+ I + Sbjct: 62 DRVKIVELPLFNSYLFVRC--TDPELRNLIRVYGVARIVYYNGKPAVVRQKEIDAIQEFL 119 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + A + + GE V + G +G VK + K+ + + + G V+L Sbjct: 120 DQASEHALC-----PGEEVEILCGAMKHVSGKVKKIK--KNHLVLYLEQLGATVCVKLD 171 >gi|149277513|ref|ZP_01883654.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39] gi|149231746|gb|EDM37124.1| hypothetical protein PBAL39_04978 [Pedobacter sp. BAL39] Length = 170 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 12/169 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY V S EKKA S L +P +R + RK E Sbjct: 9 KKWYPVCTQSRAEKKA---------YSELTRKNITSYLPLQRQMKQWSDRKKWVEEPLIR 59 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + + + T + F+ + + + + +IE + + + ++ Sbjct: 60 SYLFVHISRQQQAEVLM--TSGIARFIYFSGHIASMPEQQIEQLKLLTASPYELEITENN 117 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 GE++ + GP +G V + ++ V + V + + Sbjct: 118 LLEGEKITIKAGPLQGMSGEVVAY-RSQKKLLVRMTELNHAILVHIPAS 165 >gi|237718366|ref|ZP_04548847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452299|gb|EEO58090.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%) Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73 EKK E RLS+ G+D +P ++ + R+ + P V + + Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53 Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132 ++ T + P+ + D ++ ++ + + GE+V V Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLAHGEKVRVI 113 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GP + G + V KS++ V + + G Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141 >gi|293372803|ref|ZP_06619183.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|292632228|gb|EFF50826.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%) Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73 EKK E RLS+ G+D +P ++ + R+ + P V + + Sbjct: 3 HEKKVAE----RLSKMGIDS-----FVPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKE 53 Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132 ++ T + P+ + D ++ ++ + + GE+V V Sbjct: 54 RMEVLSFSTVSRYMVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVI 113 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GP + G + V KS++ V + + G Sbjct: 114 KGPLSGLVGELVTV-GGKSKIAVRLNMLG 141 >gi|297200225|ref|ZP_06917622.1| transcription antitermination protein [Streptomyces sviceus ATCC 29083] gi|197713321|gb|EDY57355.1| transcription antitermination protein [Streptomyces sviceus ATCC 29083] Length = 158 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + + VG V ++DGPFA+ V +D +V + +FGR PVEL++ Sbjct: 1 MPAPDIAVGASVTITDGPFATLRATVTEIDTPSQKVKGVIELFGRHAPVELSFT 54 >gi|293370096|ref|ZP_06616661.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|292634824|gb|EFF53348.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] Length = 159 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%) Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73 EKK E RL + G+++ +P ++ + R+ E P V + + Sbjct: 3 HEKKVAE----RLDKMGIEN-----FVPVQQEIHQWSDRRKVVESVLLPMMVFVHVNPKE 53 Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132 + T + +P+ + D ++ ++ + + S GE+V V Sbjct: 54 RKEVLGFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GP G + NVD KS++ V + + G Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141 >gi|313639750|gb|EFS04503.1| transcription antitermination protein NusG [Listeria seeligeri FSL S4-171] Length = 47 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV 46 M WY+V YS E K ++ R+ G+ + + +P E + Sbjct: 1 MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEEM 46 >gi|218130761|ref|ZP_03459565.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697] gi|217987105|gb|EEC53436.1| hypothetical protein BACEGG_02352 [Bacteroides eggerthii DSM 20697] Length = 187 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EK+ RL+ G++ +P + + R+ +R P Sbjct: 17 QWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIPM 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + D ++ ++ + + + S Sbjct: 68 MIFVHVTPQERALPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMCSAP 127 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP A G + ++ KS+V V + G V++ VEK Sbjct: 128 LAPGDAVKVIKGPLAGLEGELVILNG-KSKVAVRLDKLGYAH-VDMPVGFVEK 178 >gi|150004924|ref|YP_001299668.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|254884346|ref|ZP_05257056.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294775805|ref|ZP_06741307.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|319642114|ref|ZP_07996778.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] gi|149933348|gb|ABR40046.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|254837139|gb|EET17448.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294450391|gb|EFG18889.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|317386250|gb|EFV67165.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] Length = 216 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY+ V + EK + + RL E+ +P ++ +S+R ++ +R F Sbjct: 27 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86 Query: 62 PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114 P V I+ + ++ ++ G+ N D ++ +M V A Sbjct: 87 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146 Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + +G+RV V+ G G + + +D S + V++ I G V +A Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 204 Query: 173 VEKI 176 +E I Sbjct: 205 LEPI 208 >gi|291279733|ref|YP_003496568.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1] gi|290754435|dbj|BAI80812.1| transcriptional activator RfaH [Deferribacter desulfuricans SSM1] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 11/174 (6%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M W V E K + L+ E P + G+ + Sbjct: 1 MKYYWRCVYCKPR-EAKVA--------KFYLEKGGFETFYPLIKEKKRVAGKIKEIHKEL 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ + D +K T V + V D EI + + Sbjct: 52 FPNYLFVRFSVEDYRT--VKYTKGVSRVVLGDNGEPAVVDDEIIEAIKGRMQDGFVVLEE 109 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 F+ GE+V + DGPF F + + + RV + + +E+ Y++++ Sbjct: 110 KGFKKGEKVLIKDGPFKGFEAVFLKEIKPRDRVLILLKTITGELKLEIDYDKLK 163 >gi|295085179|emb|CBK66702.1| Transcription termination factor nusG. [Bacteroides xylanisolvens XB1A] Length = 159 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%) Query: 14 CEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTD 73 EKK E RL + G+++ +P ++ + R+ E P V + + Sbjct: 3 HEKKVAE----RLDKIGIEN-----FVPVQQEIHQWSDRRKMVESVLLPMMVFVHVNPKE 53 Query: 74 KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVS 132 + T + +P+ + D ++ ++ + + S GE+V V Sbjct: 54 RKEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVV 113 Query: 133 DGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 GP G + NVD KS++ V + + G Sbjct: 114 KGPLTGLVGELVNVDG-KSKIAVRLNMLG 141 >gi|257458184|ref|ZP_05623338.1| transcription antitermination protein NusG [Treponema vincentii ATCC 35580] gi|257444478|gb|EEV19567.1| transcription antitermination protein NusG [Treponema vincentii ATCC 35580] Length = 131 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDH-LVTEITIPSERVVSVRKGRKVNSERR 59 M WYI+ ++S EK+ +I + + +++EI IP E + V+ G+K R+ Sbjct: 1 MAKEWYILHIFSGYEKRIERAIRLLIENGEIPAGVISEIKIPEEELTEVKDGKKRVVRRK 60 Query: 60 FFPGYVLIKAVMTDKVY 76 F PGY+LI+ + + Sbjct: 61 FLPGYILIEMDLPAVNW 77 >gi|237710185|ref|ZP_04540666.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237727683|ref|ZP_04558164.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265750988|ref|ZP_06087051.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229434539|gb|EEO44616.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229455647|gb|EEO61368.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237884|gb|EEZ23334.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 216 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY+ V + EK + + RL E+ +P ++ +S+R ++ +R F Sbjct: 27 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 86 Query: 62 PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114 P V I+ + ++ ++ G+ N D ++ +M V A Sbjct: 87 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 146 Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + +G+RV V+ G G + + +D S + V++ I G V +A Sbjct: 147 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 204 Query: 173 VEKI 176 +E I Sbjct: 205 LEPI 208 >gi|332181380|gb|AEE17068.1| hypothetical protein Trebr_1645 [Treponema brennaborense DSM 12168] Length = 175 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 5/171 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y + V + E+K +S+ + G + ++ ++ + ++ GR+ FFPGYV Sbjct: 4 YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGREY--FESFFPGYV 59 Query: 66 LIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 ++ +D K + FL + P+ S+ E + ++ + V F+ Sbjct: 60 FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170 >gi|298386585|ref|ZP_06996141.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298260962|gb|EFI03830.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 190 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 12/175 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RW + V + EKK E RLS+ G+++ +P ++ V R+ ER P Sbjct: 25 KRWLVALVRISHEKKTSE----RLSKMGIEN-----FLPVQQEVHQWSDRRKVVERVLLP 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 + + + ++ + L P+ + D ++ ++ + + S Sbjct: 76 MMIFVHVDIYEQKEVLTLGSISRYMVLRGESTPAVIPDEQMHRFKFMLDYSDEAINMSTT 135 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G ++ V GP + G + V+ KS+V V + + G V++ VE + Sbjct: 136 PLSPGTKIKVIKGPLSGLQGELVTVNG-KSKVAVRLTMLGCAF-VDIPVGCVEPL 188 >gi|212694317|ref|ZP_03302445.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855] gi|212662818|gb|EEB23392.1| hypothetical protein BACDOR_03843 [Bacteroides dorei DSM 17855] Length = 226 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG-RKVNSERRFF 61 WY+ V + EK + + RL E+ +P ++ +S+R ++ +R F Sbjct: 37 KHWYVAVVNNRSEKACQDRLRKRLKNETDSEKAYEVYVPIQQEMSIRHDGKRKKVDRIVF 96 Query: 62 PGYVLIKAVMT---DKVYHTIKDTPKVIGFLGTGENPSPV----TDSEIEHIMNQVEAAV 114 P V I+ + ++ ++ G+ N D ++ +M V A Sbjct: 97 PALVFIRCTDSVRRKEIVCLPYIKRFMVNIAGSSRNTCRPVAIIPDHQMYSLMRMVNDAE 156 Query: 115 QRPVSS-VFFEVGERVCVSDGPFASFNGIV-KNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + +G+RV V+ G G + + +D S + V++ I G V +A Sbjct: 157 EHVTIESCPLHLGDRVRVNGGKLVGLEGNICREIDGSTS-LVVKIDILGCA-KVTIAREL 214 Query: 173 VEKI 176 +E I Sbjct: 215 LEPI 218 >gi|284037545|ref|YP_003387475.1| NusG antitermination factor [Spirosoma linguale DSM 74] gi|283816838|gb|ADB38676.1| NusG antitermination factor [Spirosoma linguale DSM 74] Length = 161 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++ EK + + E+ P R R E FP Y Sbjct: 3 WYVLCTKPRKEKFLAKLLAE---------KQIEVYCPLIRRKRRWSDRIKTVEEPLFPCY 53 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + +++ + TP ++ +L P+ V D EI+ I + + F Sbjct: 54 CFVNVKESERADVFV--TPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESFN 111 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 ++V ++ G F G V + + V + + Sbjct: 112 PKDKVVINSGSFMGQGGTVV----NQQGIKVLIHL 142 >gi|325298353|ref|YP_004258270.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317906|gb|ADY35797.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 500 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 21/167 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V+ + E K VE + + ++ + EI P+ V+V + ++ F G Sbjct: 11 RWYVVRTKRHQESKLVELLEKQKAQ---TKNILEIYAPTHTTVNVHQDSDD-KQKPLFAG 66 Query: 64 YVLIKAVMTDKVYHTIK-----------------DTPKVIGFLGTGENPSPVTDSEIEHI 106 V + A + + T + ++ + + Sbjct: 67 IVFVLATQDALMNFMKEHSLDAGMQYERKNEKGERTRMCVIPESQMRAFRDYNENYADKV 126 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 + ++ E E V V DGP A G + EK V Sbjct: 127 IVLEHPYSDYAFNTKTGEPNEIVRVIDGPLAGCEGYICRFRHEKRLV 173 >gi|325298850|ref|YP_004258767.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318403|gb|ADY36294.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 519 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 21/167 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWYIV+ E+K E + ++S + E+ P+ V++R + F G Sbjct: 11 RWYIVRTRPRQERKLAELLEQYKAKSV---NILEVYAPTHTTVNIRH-EGSERQAPLFVG 66 Query: 64 YVLIKAV---MTDKVYHTIKD-TPKVIGFLGTGEN-------------PSPVTDSEIEHI 106 + + A +TD + + + G GE ++ + + Sbjct: 67 TIFVLATQKALTDFMEEHSLNGILQYERKNGKGEKTRLRVIPEEQMRAFRDYNENYADRV 126 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 + ++ E E V V DGP A G + +K V Sbjct: 127 IVLERPYTDYAFNAKSDEPNEIVRVIDGPLAGRKGYICRFRRDKRLV 173 >gi|332181956|gb|AEE17644.1| hypothetical protein Trebr_2235 [Treponema brennaborense DSM 12168] Length = 175 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 5/171 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y + V + E+K +S+ + G + ++ ++ + ++ GR+ FFPGYV Sbjct: 4 YCISVRTGMEEKFRQSVLTFVE--GDERVLCGRLHILKKRMRLKSGREY--FESFFPGYV 59 Query: 66 LIKAVMTDKVYHTIKDTPK-VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 ++ +D K + FL + P+ S+ E + ++ + V F+ Sbjct: 60 FLETEESDAAKLRCFSAGKGFLRFLPSSSEVHPLEQSDSEIVRKILQFGSTVGIVPVTFD 119 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+R+ + + PF F+G V V+ R+++E+ V V L Y +V K Sbjct: 120 KGDRIVIMNAPFKDFSGRVVAVNRRNKRLNIEIDFMNGVKVVGLTYEEVRK 170 >gi|317474286|ref|ZP_07933562.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|316909596|gb|EFV31274.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 187 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W + V S EK+ RL+ G++ +P + + R+ +R P Sbjct: 17 QWLVAYVQSCLEKRTAR----RLAAMGIE-----CYLPIQSEIHQWSDRRKRVDRLIIPM 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVF 122 + + ++ L P+ + D ++ ++ + + + S Sbjct: 68 MIFVHVTPQERALPLSLQAVNRYMVLRGESAPAVIPDEQMAQFRFMLDYSQEAVEMCSAP 127 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G+ V V GP G + ++ KS+V V + G V++ VEK Sbjct: 128 LAPGDAVKVIKGPLTGLEGELVILNG-KSKVAVRLDKLGYAH-VDMPVGFVEK 178 >gi|326487792|dbj|BAK05568.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 333 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V V GPFA F G + V + +V V++ +FG+ + V+L ++Q+E + Sbjct: 281 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 331 >gi|169837422|ref|ZP_02870610.1| transcription antitermination protein NusG [candidate division TM7 single-cell isolate TM7a] Length = 91 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 1/78 (1%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WYI+ YS EKK + R+ L + + G N+ + Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDRAFLELL-AAFFNKSDAGGVFNTNVKLL 73 Query: 62 PGYVLIKAVMTDKVYHTI 79 Y +I +T+ + + Sbjct: 74 SAYTVISTGITNPILSCV 91 >gi|125588461|gb|EAZ29125.1| hypothetical protein OsJ_13188 [Oryza sativa Japonica Group] Length = 390 Score = 60.8 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIV 143 G E+ + + +MN+++ ++P+S F G V V GPF F G + Sbjct: 296 GGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSL 355 Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V+ + + +++ +FG+ + V+L ++Q+E + Sbjct: 356 LEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 388 Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-----VFFEVGERVCVSDGPFASFNGIV 143 G E+ + + +MN+++ ++P+S F G V V GPF F G + Sbjct: 169 GGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSL 228 Query: 144 KNVDEEKSRVHVEV 157 V+ + +V + + Sbjct: 229 LEVNRKNKKVRLMI 242 >gi|283798124|ref|ZP_06347277.1| putative transcription termination factor NusG [Clostridium sp. M62/1] gi|291074102|gb|EFE11466.1| putative transcription termination factor NusG [Clostridium sp. M62/1] gi|295091729|emb|CBK77836.1| Transcription antiterminator [Clostridium cf. saccharolyticum K10] Length = 176 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR-FF 61 WY++ E + +ES+ RL + ++E + + G R+ F Sbjct: 1 MSWYVLYCRPGQETEIIESLKQRLPK----DALSEAFLFQCERLWRAGGGNWKLIRKEMF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV +++ ++ + ++ ++ + PV E E + +S Sbjct: 57 PGYVFLESEDSEYLSEKLEAYRGIVRVMEEPGYLIPVYREEEERLRRLCGPEHILRLSYG 116 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + E G V +GP + D + +E + G+ T Sbjct: 117 YRENGVNH-VVEGPLKGMERQIVKADWHRRFAQIETAVGGKRT 158 >gi|26554337|ref|NP_758271.1| transcription antitermination factor [Mycoplasma penetrans HF-2] gi|26454346|dbj|BAC44675.1| transcription antitermination factor [Mycoplasma penetrans HF-2] Length = 348 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 F VG V + + G+++++D EK + V V I G+ T V++ ++++ K Sbjct: 294 FAVGNTVEILVESMQGYEGVIESIDLEKDKAKVLVDILGKETIVDVHFSEIRK 346 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 31/159 (19%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV------------- 48 +WYIV + E ++I ++ L ++V E+ + R +++ Sbjct: 17 EAKWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPPPSR 76 Query: 49 ---------------RKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 R + E FPGY+ IK +M D ++ I++T V GF+G+ Sbjct: 77 FRNTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSG 136 Query: 94 ---NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERV 129 P P++D E+ ++ N + V + V Sbjct: 137 KGAKPIPMSDIEVANLFNPEMNQDIIINKTSDVFVEQTV 175 >gi|283797664|ref|ZP_06346817.1| putative transcription termination factor NusG [Clostridium sp. M62/1] gi|291074670|gb|EFE12034.1| putative transcription termination factor NusG [Clostridium sp. M62/1] Length = 176 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 8/163 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E++ + +S + + ++ GR FP Y Sbjct: 2 WYVIQTTTGKEEELAGIVRRNVSHALYGSCFSM----KRELLKRLGGRWTAVTETMFPSY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----SS 120 V ++ +++++ +K P+ LG E + E E+ +N + + ++ Sbjct: 58 VFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPIEKEEENFLNILRRNEKETCVAGLTT 117 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + + + +DGP F + ++ K VE+ + G+ Sbjct: 118 LDLDEDGGIRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGKE 160 >gi|198275335|ref|ZP_03207866.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135] gi|198271918|gb|EDY96188.1| hypothetical protein BACPLE_01496 [Bacteroides plebeius DSM 17135] Length = 171 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 13/175 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V + EKK E + L +P + V+ RK ++ P Sbjct: 8 HWYAFYVRMHHEKKTAEKLEM---------LKVVHFLPIQEVIRQWSDRKKKIKQVVIPM 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSV 121 + I ++ + + +E + S Sbjct: 59 LIFICTDEKGRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSDETIRFQSE 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 GE+V V G G + + E+ S+V + + G T VE+ V+K+ Sbjct: 119 PLAPGEKVEVIKGSLKGLQGELVEL-EDHSQVMIRIEHLGYAT-VEIPVGYVKKL 171 >gi|83816408|ref|YP_446838.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855] gi|83757802|gb|ABC45915.1| hypothetical protein SRU_2746 [Salinibacter ruber DSM 13855] Length = 280 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + EKK + R ++ +P + V R F Y Sbjct: 116 WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEITEPLFRNY 166 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + D++ T ++ + P+ + + ++ + + + + Sbjct: 167 LFARVDEKDRLRVL--RTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 224 Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VGE V ++ GP G V ++ + V+V + +E+A + V+ Sbjct: 225 VGETVTITGGPERLQGLTGKVLQH-RGQTYLLVQVRAVRQAVKIEVAADWVQ 275 >gi|46204856|ref|ZP_00209587.1| COG0250: Transcription antiterminator [Magnetospirillum magnetotacticum MS-1] Length = 63 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + F +G+ V ++DG FA+F V+ VD ++ R V V +FGR P E+A + Sbjct: 1 EVQDFVETLFAIGDEVRITDGGFATFMAKVEKVDVKRGRYTVAVDVFGRPVPFEIAEESL 60 Query: 174 E 174 E Sbjct: 61 E 61 >gi|261885758|ref|ZP_06009797.1| transcription antitermination protein NusG [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 77 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY +Q Y+ E +I + G++ + E+ +P+E V+ ++ G++ +E Sbjct: 1 MAHKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESL 60 Query: 61 FPGYVL 66 +PGY Sbjct: 61 YPGYAF 66 >gi|218961752|ref|YP_001741527.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas acidaminovorans] gi|167730409|emb|CAO81321.1| hypothetical protein CLOAM1470 [Candidatus Cloacamonas acidaminovorans] Length = 191 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 18/175 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W +V CEKK + H +T +P V + RKV+ + FP Sbjct: 24 KWVVVHTKPRCEKKLADYAK--------QHQIT-YYLPQYTSKRVYQRRKVDVNKVLFPS 74 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV + K I + + FL + + + + Q ++ ++ Sbjct: 75 YVFVGIDFKGKQELLI--SGYTVNFLKVNAQKELIDELQAIYYGRQKNVQME---PGLWL 129 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVVIFGRVTPVELAYNQVEKIV 177 E G V + +GP G+V+ D+ K + V ++V I + V++ + KI+ Sbjct: 130 EKGLEVEIVNGPLKGIRGVVE--DQSKLTEVRLQVNILKQAVLVKVRTQDI-KII 181 >gi|15921653|ref|NP_377322.1| transcription antitermination protein NusG [Sulfolobus tokodaii str. 7] gi|15622440|dbj|BAB66431.1| 152aa long hypothetical transcription termination-antitermination factor [Sulfolobus tokodaii str. 7] Length = 152 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 34/173 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+V E I R+ + + V I +P GYV Sbjct: 10 YAVRVTGGQEINVALMIEERIKTNNIKE-VYSIIVP-----------------PNVKGYV 51 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V + V GF + + + + + ++V Sbjct: 52 ILEATGPHVVKLVSQGIRHVRGFAQG------------LVQKDDIIKFISKTTIAPAYKV 99 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176 G+ V V+ GPF V +D K+ V + I P V + +QV+ + Sbjct: 100 GDMVEVTSGPFRGMQAQVVRIDSAKN--EVVLNILESSFPLQVTVPIDQVKPV 150 >gi|223933545|ref|ZP_03625527.1| NusG antitermination factor [Streptococcus suis 89/1591] gi|223897805|gb|EEF64184.1| NusG antitermination factor [Streptococcus suis 89/1591] Length = 63 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + +VG+ V + DG F + G + +D ++V + + +FG T E+ +Q+ Sbjct: 6 QEFDIDVKVGDTVRIIDGAFTDYTGKITEID--NNKVKMVISMFGNDTIAEVNLSQI 60 >gi|260428101|ref|ZP_05782080.1| putative NusG antitermination factor [Citreicella sp. SE45] gi|260422593|gb|EEX15844.1| putative NusG antitermination factor [Citreicella sp. SE45] Length = 222 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 20/173 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY + E+ A + R P + +G+ ERR+ PGY Sbjct: 45 WYALLCRPQQERHAESWLAAR---------GVYAFHPVTSRRTRVRGKLREYERRYLPGY 95 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-------EIEHIMNQVEAAVQRP 117 V + + + + + + Q + ++ Sbjct: 96 VFARFDGIPIPHRVLTSPFLTGALCRSDGQWGVLGPKRLAALHEMRARDLRQEDERQEQK 155 Query: 118 VSSVFFEVGERV---CVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + GPF + V +D V V +FGR V Sbjct: 156 RRAAAARRVRAGERAMFRAGPFEGMSCEVVEIDAAGG-VKVRFDLFGRENSVT 207 >gi|182415449|ref|YP_001820515.1| NusG antitermination factor [Opitutus terrae PB90-1] gi|177842663|gb|ACB76915.1| NusG antitermination factor [Opitutus terrae PB90-1] Length = 180 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 17/171 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + CEKK + E +P V + + + FPGY Sbjct: 23 WLVCHTKPRCEKKFAAL---------MAAERFEHYLPLVDSVRKYRQQTKRFTKPLFPGY 73 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 V V +K + E ++ I+ P+ + Sbjct: 74 VFA-CVPNEKRARIFQQDLLARAIDVDDERRFLRQLDDVRAIVASGYELTVLPLLT---- 128 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSR-VHVEVVIFGRVTPVELAYNQVE 174 G RV + GP G V D R V + V + + V+L ++ Sbjct: 129 RGRRVKIVGGPLHGLEGFVD--DPSNPRGVVLSVDVLQQGLLVKLPAENLQ 177 >gi|325297257|ref|YP_004257174.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324316810|gb|ADY34701.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 525 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 21/167 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW++V+ E + I + + E+ P+ V VR G F G Sbjct: 12 RWFLVRTKPGHEPELCARIEREKDKL---RNILEVYYPTHTKVYVRLG-DNEQRLPLFDG 67 Query: 64 YVLIKAVMTDKVYHTIKDT-----------------PKVIGFLGTGENPSPVTDSEIEHI 106 YV + A + V + ++ + + Sbjct: 68 YVFVLATQSALVEFLRDNCSDAYIRYNRKRTEEEKATPCTIPESQMRAFRDYNENYADKV 127 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 + ++ E E V V DGP A G + +K V Sbjct: 128 IVLERPYSDYAFNAKEGEANEIVRVVDGPLAGQEGYICRFHRKKGLV 174 >gi|323454647|gb|EGB10517.1| hypothetical protein AURANDRAFT_62510 [Aureococcus anophagefferens] Length = 544 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WYI+Q Y E +I L V I +P+E+V S R + + E+ + Sbjct: 51 WYILQCYVGNEVWCAATIEEILGKPEHVEQRSRVETILVPTEKVASTRGRKVYHKEKIIY 110 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-------------------TDSE 102 PGYV + M +++ + PK+ F+G +++ Sbjct: 111 PGYVFCRLRMEQELWRVLTRVPKIANFVGIDAGMRNGIGEIVEGYKGAVTPVPLSAREAQ 170 Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + ++ V F +G+ V V DGP A G+V++V ++ V + Sbjct: 171 MMLSVHLEGQEVGEDNIVDRFALGDVVAVLDGPSAGERGLVRSVKNDQLIVRL 223 >gi|313157678|gb|EFR57089.1| transcription termination/antitermination factor NusG [Alistipes sp. HGB5] Length = 180 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 43/163 (26%), Gaps = 17/163 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +WY ++V + E A + D + E +P G++ Sbjct: 10 EQQWYAIRVTYSREMAAKSYL---------DSIGIESYVPMHFAERTYGGKRRKVWEPLI 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----- 116 + I+ T + + V V A Sbjct: 61 HNLLFIRTSADRLREIKATTTLPIRYIMDRESKSPTVIPERQMQDFMAVVATQNEHVEIV 120 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 V E G+ V V++G FA G K V V I Sbjct: 121 APQDVDLEKGDPVRVTEGIFAGIEGRYIR---HKGHSKVAVAI 160 >gi|5739314|gb|AAD50428.1|AF161701_1 HnusG [Streptococcus pneumoniae] Length = 74 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 + EI I+ + VQ V E+G+ V + DG FA + G + +D ++V + + + Sbjct: 2 EQEIRDILVSMGQTVQEFDFDV--EIGQTVRIIDGAFADYTGKITEID--NNKVKMIISM 57 Query: 160 FGRVTPVELAYNQV 173 FG T E+ NQ+ Sbjct: 58 FGNDTVAEVNLNQI 71 >gi|139437029|ref|ZP_01771189.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC 25986] gi|133776676|gb|EBA40496.1| Hypothetical protein COLAER_00163 [Collinsella aerofaciens ATCC 25986] Length = 196 Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 4/154 (2%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V + E++ E + + + + + + R G + + Sbjct: 28 RWYLVHTPNGKERETCEKVRCIIPHNLMQD----AFVMQKEFWFKRDGAWSLQTKPMYKE 83 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y + + + G+ E + + V +SV Sbjct: 84 YFFVATHDAAALDRALAQLSFGCRIAGSRERAYMPMPDDAQDWYRSVLDEDGVVRNSVAR 143 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + + GP V +D K V+V Sbjct: 144 IEDGVLHIEQGPLVGQEARVHKIDRRKRWCLVDV 177 >gi|149276430|ref|ZP_01882574.1| Transcription antiterminator [Pedobacter sp. BAL39] gi|149232950|gb|EDM38325.1| Transcription antiterminator [Pedobacter sp. BAL39] Length = 173 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 12/153 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ V EKK + + P +V S R E F Sbjct: 13 KWFAVYTRPRWEKKVEQQLKM---------QGITCYCPLRKVQSQWADRIKVVELPLFSS 63 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV-F 122 YV + +++ ++ V+ F+ + + + S IE I + +E + S+ Sbjct: 64 YVFVCIHPREELN--VRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRD 121 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 EVG+RV + G G V V + + + Sbjct: 122 LEVGDRVRIKAGLMGEQEGKVLQVRGKNVLLVI 154 >gi|89514493|gb|ABD75121.1| transcription antiterminator NusG [Sinorhizobium saheli] Length = 129 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 + +F Y+ + + + + I T V + + P PV +E ++ + Sbjct: 6 QHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHAPLPVPHGVVESLLAATD 65 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 E G+++ V++GPF G + V V + + I R P+ + Sbjct: 66 DEGFL-HPKELLEPGQKIRVTNGPFTDQLGTLDYV-GRSGAVRILIDIMNRAVPIYID 121 >gi|302813571|ref|XP_002988471.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii] gi|300143873|gb|EFJ10561.1| hypothetical protein SELMODRAFT_427155 [Selaginella moellendorffii] Length = 311 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 47/216 (21%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY ++V++N E +++E++ L E+ P SV +G+ + + Sbjct: 85 MGMQWYTLRVFTNNEAESMEALRSTLEAE-FPDAKFEVWSPIIPTESVVRGKSRFAMKAM 143 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIE--------------- 104 G++ ++ V+ VY + V F+G D+++ Sbjct: 144 LRGHIFLRCVLEAPVYRHAMNERSVFCFVGAFPYKMKAGYDTKMMKGGYPDARIPAPVPS 203 Query: 105 -----------------------------HIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135 ++ +V+ VG+ V V G Sbjct: 204 YQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQGDLRVGDMVAVISGA 263 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + +F G + +V + + +FG T +E+ + Sbjct: 264 YQNFQGTILEFLPA-GKVKIVLPVFGTDTEIEVDMD 298 >gi|313145599|ref|ZP_07807792.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134366|gb|EFR51726.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 181 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V +N E+K + + +P + V R+G+++ ER P Sbjct: 17 KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 67 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V + + + ++ T V F + P+ + D+++ ++ + + + + Sbjct: 68 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 125 Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G RV V+ G G + + K + V + +FG V + + V K Sbjct: 126 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 179 >gi|240140460|ref|YP_002964939.1| hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens AM1] gi|240010436|gb|ACS41662.1| Hypothetical protein MexAM1_META1p3982 [Methylobacterium extorquens AM1] Length = 187 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + F VG+ V +S+G FA+F ++ VD ++ R V V +FGR P E+A +E Sbjct: 127 QDFVETLFSVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFGRPVPFEIAEESLE 185 >gi|325295631|ref|YP_004282145.1| NGN domain-containing protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066079|gb|ADY74086.1| NGN domain-containing protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 168 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 18/173 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 TP+W++V + E+ + + + P +VV + + F Sbjct: 6 TPKWHVVYIKPRKEEVVKVQLER---------IGIKTFYPKVKVVK----KGIEKVEPMF 52 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 P Y+ K + ++ V + G +++ E + V + + + Sbjct: 53 PLYMFAKFSVVKDFFNVHF-ARGVKRVVKFGNQVPSLSE-EFIEYLRSVNGCLIE--NKL 108 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + V + DGPF +F G V + + RV V + +T +E+ VE Sbjct: 109 GIKESDCVKIVDGPFRNFTGKVLKMKRGEERVVVLLKAMNSLT-LEVPVEYVE 160 >gi|255007890|ref|ZP_05280016.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 172 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V +N E+K + + +P + V R+G+++ ER P Sbjct: 8 KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 58 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V + + + ++ T V F + P+ + D+++ ++ + + + + Sbjct: 59 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116 Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G RV V+ G G + + K + V + +FG V + + V K Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 170 >gi|284006544|emb|CBA71805.1| transcriptional activator [Arsenophonus nasoniae] Length = 126 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 48 VRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107 + +G+++ FP Y+ +K + TI+ T V F+ G P V D+ I+ Sbjct: 1 MVRGKRITVTEALFPNYLFVKFDPEEIHTTTIRSTRGVSHFIRFGLYPVIVPDNIIDEFK 60 Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + + + + V G+ V +++G F I D E R + + I + Sbjct: 61 SASKPEIVAAKTPVS---GDTVIITEGIFEGLKAIFSEPDGEN-RSVILLNILNQNIAKL 116 Query: 168 LAYNQVEK 175 + Q +K Sbjct: 117 IDNKQFKK 124 >gi|238790596|ref|ZP_04634362.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641] gi|238721325|gb|EEQ12999.1| Transcriptional activator rfaH [Yersinia frederiksenii ATCC 33641] Length = 130 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 4/133 (3%) Query: 43 ERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSE 102 + + +G++ + FP Y+ ++ + TI T V F+ G P+ + Sbjct: 1 MTIEKIVRGKRAETTEALFPNYLFVEFDPENIHTTTISATRGVSHFVRFGVQPAVIPALV 60 Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 I + + + P + G+ V +++G F+ I D E +R + + + Sbjct: 61 IAEMQSHTADKIIAPEVPI---PGDVVTITEGIFSGLQAIYTEPDGE-ARSMLLLNMLNS 116 Query: 163 VTPVELAYNQVEK 175 L Q EK Sbjct: 117 QVLQSLDNRQFEK 129 >gi|255008491|ref|ZP_05280617.1| putative LPS-related regulatory protein [Bacteroides fragilis 3_1_12] gi|313146220|ref|ZP_07808413.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134987|gb|EFR52347.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 177 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+D+ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGIDNYLPLQPVIRMWNNRKKKIFIPVVPGCLFVY- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFF 123 ++ + I V L + + ++E +E + + + F Sbjct: 70 ------ISSEEIAQITSIHGVAFLLKEKGQYVSIPEVQMETFRTMIERSHELVEFAPTDF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + +++ + + G Sbjct: 124 VPGSTVQVIRGQLQGLVAELVE-CQGNNKLLLRIEGLG 160 >gi|265763089|ref|ZP_06091657.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255697|gb|EEZ27043.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 176 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+++ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123 ++ + + V L + + ++E + + + F Sbjct: 70 ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + +++ + V G Sbjct: 124 VPGTIVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160 >gi|60680552|ref|YP_210696.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|60491986|emb|CAH06747.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|301162089|emb|CBW21633.1| putative transcriptional regulator [Bacteroides fragilis 638R] Length = 172 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+V +N E+K + + +P + V R+G+++ ER P Sbjct: 8 KHWYVVLTRTNSERKVRDY---------FQLQEVDTFLPVQNRVIEREGKRIERERLLLP 58 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGF--LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V + + + ++ T V F + P+ + D+++ ++ + + + + Sbjct: 59 RMVFVHI--SRQEMAAVRSTLNVYDFLRDRSTGAPTCIPDAQMADFRYMLDYSQDQVILT 116 Query: 121 VFFEV-GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G RV V+ G G + + K + V + +FG V + + V K Sbjct: 117 GESIPKGTRVVVAKGDLQGLRGELVRYN-NKYHILVRIDMFGSA-MVTIPASYVRK 170 >gi|294508771|ref|YP_003572830.1| transcriptional regulator NusG/RfaH family [Salinibacter ruber M8] gi|294345100|emb|CBH25878.1| putative transcriptional regulator NusG/RfaH family [Salinibacter ruber M8] Length = 175 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 14/172 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + EKK + R ++ +P + V R F Y Sbjct: 11 WRVFYTRARAEKKCETRLDERR---------IDVMVPKKTEVRQWSDRTKEVTEPLFRNY 61 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + D++ T ++ + P+ + + ++ + + + + Sbjct: 62 LFARVDEKDRLRVL--RTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPA 119 Query: 125 VGERVCVSDGP--FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VGE V ++ GP G V ++ + V+V + +E+A + V+ Sbjct: 120 VGETVTITGGPERLQGLTGKVLQH-RGQTYLLVQVRAVRQAVKIEVAADWVQ 170 >gi|225440570|ref|XP_002276763.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297740266|emb|CBI30448.3| unnamed protein product [Vitis vinifera] Length = 339 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + + G V V G F F+G +K +D + + V +FG+ T V+L Sbjct: 271 IADGASTAKHDKLLKPGSTVRVVSGTFTEFSGSLKKLDRKNGKATVGFTLFGKETLVDLD 330 Query: 170 YNQV 173 N++ Sbjct: 331 VNEI 334 >gi|253563030|ref|ZP_04840487.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946806|gb|EES87088.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 176 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+++ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123 ++ + + V L + + ++E + + + F Sbjct: 70 ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + +++ + V G Sbjct: 124 VPGTVVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160 >gi|60681203|ref|YP_211347.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC 9343] gi|60492637|emb|CAH07409.1| putative LPS-related regulatory protein [Bacteroides fragilis NCTC 9343] Length = 176 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+++ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123 ++ + + V L + + ++E + + + F Sbjct: 70 ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + +++ + V G Sbjct: 124 VPGTVVRVISGQLQGLEAELVE-CQGNNKLLLRVEGLG 160 >gi|319902765|ref|YP_004162493.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319417796|gb|ADV44907.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] Length = 217 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV-RKGRKVNSERRFF 61 WY+ V ++ EK + + R+ D E+ + ++ + V G++ ER F Sbjct: 35 KHWYVAIVNNHSEKLIADELVKRIKNQKEDEKDYEVYVAVQKEMRVLCNGKRKQVERIIF 94 Query: 62 PGYVLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 P + I + + + + G G P V + ++ + Sbjct: 95 PALIFIYCTDLVRRKEIAYLPYIKRFMVNIAGAQQNGHRPVAVIPERQMIQLKRMVNDAE 154 Query: 116 RP--VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 P S +G+RV V+ G G + + + + + I G Sbjct: 155 NPVVFDSRPLHLGKRVRVNGGKLMGLEGHILQCSDGSINLVIMIDILG 202 >gi|167753455|ref|ZP_02425582.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216] gi|167658080|gb|EDS02210.1| hypothetical protein ALIPUT_01729 [Alistipes putredinis DSM 17216] Length = 181 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 17/161 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++V + E + +LS+ G+ + P +V +K+ + Sbjct: 10 WYALKV---FYNRVFE-LEKQLSQEGVRSYI-----PLLHEDTVAGDKKIRKRKPAVSSL 60 Query: 65 VLIK---AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS-- 119 + I+ + + P + F + P+ + D E+E M A Sbjct: 61 MFIRQSEHYLLELQDRMKASCPFMAYFDRETKKPAVIPDREMELFMQITSADTSDLEYFS 120 Query: 120 --SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 ++ + G++V V+ GPF G +K + R+ V + Sbjct: 121 DEAIDYRSGDKVRVTGGPFKGAEGYIKRI-RGNRRLVVALE 160 >gi|262275258|ref|ZP_06053068.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886] gi|262220503|gb|EEY71818.1| hypothetical protein VHA_002240 [Grimontia hollisae CIP 101886] Length = 171 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 12/170 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY V + N EK + R L E+ +P ++ R+ + F Sbjct: 5 RWYAVYTHFNEEK---------VLRDELLAKGYEVYLPERKLWETLGNRRRVTYEPLFKC 55 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 ++ ++ +K + G+ + +++S I I + S Sbjct: 56 HLFVRTTPEGLKN--VKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSN 113 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G V V +GP G++ + E+ E+ G V + + + Sbjct: 114 VEGLAVAVVNGPLKGMIGVLPAGEGERPIAM-EIGQLGYSVNVTVPMDTI 162 >gi|309784559|ref|ZP_07679197.1| transcriptional activator RfaH [Shigella dysenteriae 1617] gi|308927665|gb|EFP73134.1| transcriptional activator RfaH [Shigella dysenteriae 1617] Length = 137 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 4/139 (2%) Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97 P + + +G++ FP Y+ ++ TI T V F+ G +P+ Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAI 62 Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + I + + P + G++V +++G F F I D E +R + + Sbjct: 63 VPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118 Query: 158 VIFGRVTPVELAYNQVEKI 176 + + + + K+ Sbjct: 119 NLINKEIKHSVKNTEFRKL 137 >gi|312969413|ref|ZP_07783615.1| transcriptional activator RfaH [Escherichia coli 2362-75] gi|312285960|gb|EFR13878.1| transcriptional activator RfaH [Escherichia coli 2362-75] Length = 137 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 4/139 (2%) Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97 P + + +G++ FP Y+ ++ TI T V F+ G +P+ Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAI 62 Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + I + + P + G++V +++G F F I D E +R + + Sbjct: 63 VPSAVIHQLSVYKPKDIVDPST---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118 Query: 158 VIFGRVTPVELAYNQVEKI 176 + + + + K+ Sbjct: 119 NLINKEIKHSVKNTEFRKL 137 >gi|2447002|dbj|BAA22443.1| NusG-like protein [Streptomyces griseus] Length = 38 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 23/37 (62%) Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + ++ + +V V IFGR TPVEL+++Q++K Sbjct: 1 MQATINEINADSKKVKGLVEIFGRETPVELSFDQIQK 37 >gi|325281625|ref|YP_004254167.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|325281646|ref|YP_004254188.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313434|gb|ADY33987.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313455|gb|ADY34008.1| NGN domain-containing protein [Odoribacter splanchnicus DSM 20712] Length = 176 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 12/174 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ V S EKK + + L E +P + V+ RK G Sbjct: 12 HWHAVFTASRAEKKVRDRLEE---------LGVECFLPVQTVLRQWTYRKSRVVVPVIAG 62 Query: 64 YVLIKAVMTDKVYH-TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 V ++ ++V K + G + + +++ Sbjct: 63 LVFVRVGRQEQVKVLQTKGVVAFLRLKGEAGAAVIPDKQMEDFRFLLDFSEEAVEMTNEN 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G+ V V G G + +V V + + G V + + VEK+ Sbjct: 123 IKAGDLVRVVKGSLRGMEGELIRHKGVT-KVLVRIDMLGCA-MVNIPASFVEKL 174 >gi|218528321|ref|YP_002419137.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum CM4] gi|218520624|gb|ACK81209.1| hypothetical protein Mchl_0271 [Methylobacterium chloromethanicum CM4] Length = 237 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 19/192 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVS----------VRKGR 52 RWY+ + E A SI + R + +P E + R+ + Sbjct: 45 RWYVCTTAPSRELSAAASIRRAMVRGVREDETPFIPYVPCEYLWRRSVRSNLRVPRREQQ 104 Query: 53 KVNSERRFFPGYVLIKAVMT----DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 + F G + +T + ++ + G LG+ + + Sbjct: 105 RPVMRSYLFVGVLGGLCNVTLAALRERDIEGRNVHGLTGILGSTNRGPLAMNPSGLRWLR 164 Query: 109 QVEAAVQRPVSSV----FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 Q+ +++ +GE V G F+ F G + + + + + G Sbjct: 165 QLGEDELAGRTNLTPLAGMPLGEEVRAGSGLFSGFIGKFVGTSDGGAVGVISLEVMGAPF 224 Query: 165 PVELAYNQVEKI 176 L ++++ Sbjct: 225 DYRLPIEDIQRV 236 >gi|298481737|ref|ZP_06999927.1| transcriptional regulator [Bacteroides sp. D22] gi|298271959|gb|EFI13530.1| transcriptional regulator [Bacteroides sp. D22] Length = 146 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 40 IPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT 99 +P ++ + R+ + P V + +++ T + P+ + Sbjct: 1 VPVQQQIHQWSDRRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIP 60 Query: 100 DSEIEHIMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 D ++ ++ + + GE+V V GP + G + V KS++ V + Sbjct: 61 DEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLN 119 Query: 159 IFG 161 + G Sbjct: 120 MLG 122 >gi|168333282|ref|ZP_02691566.1| transcription antitermination protein NusG [Epulopiscium sp. 'N.t. morphotype B'] Length = 55 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50 +WY+V YS E K +I + + L+ ++ IP + Sbjct: 3 EAKWYVVHTYSGYENKVKVNIEKAIKNRNMQELIQKVEIPMHNEEEEKN 51 >gi|323167597|gb|EFZ53303.1| transcriptional activator RfaH [Shigella sonnei 53G] Length = 137 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 4/139 (2%) Query: 38 ITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP 97 P + + +G++ FP Y+ ++ TI T V F+ G + + Sbjct: 3 CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASLAI 62 Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + I + + P + G++V +++G F F I D E +R + + Sbjct: 63 VPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLL 118 Query: 158 VIFGRVTPVELAYNQVEKI 176 + + + + K+ Sbjct: 119 NLINKEIKHSVKNTEFRKL 137 >gi|53712992|ref|YP_098984.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52215857|dbj|BAD48450.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 176 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+++ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123 ++ + + V L + + ++E + + + F Sbjct: 70 ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + + +++ + V G Sbjct: 124 VPGTIVRVISGQLQGLEAELVD-CQGNNKLLLRVEGLG 160 >gi|326625693|gb|EGE32038.1| transcriptional activator RfaH [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 131 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 4/130 (3%) Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 + +G++ + FP Y+ ++ TI T V F+ G +P+ V S I + Sbjct: 6 KMVRGKRTSVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQL 65 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 V P + G+ V +++G F I D E R + + + + Sbjct: 66 SIYKPEGVVDPET---PYPGDSVIITEGAFEGLKAIFTEPDGET-RSILLLNLLNKEVKQ 121 Query: 167 ELAYNQVEKI 176 + KI Sbjct: 122 SVKNTGFRKI 131 >gi|300021678|ref|YP_003754289.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC 51888] gi|300023083|ref|YP_003755694.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC 51888] gi|299523499|gb|ADJ21968.1| hypothetical protein Hden_0141 [Hyphomicrobium denitrificans ATCC 51888] gi|299524904|gb|ADJ23373.1| hypothetical protein Hden_1561 [Hyphomicrobium denitrificans ATCC 51888] Length = 184 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 16/185 (8%) Query: 3 PRWYIVQVYSNCEK----KAVESIGGR---LSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 WY ++ E + E+ R L + G D + + + + + Sbjct: 1 MTWYAIRTNPQREFLLAGRYDENGEWRPGVLEKKGYDQVFCPTETKFRKTIKKGRRVSIP 60 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 F GY+ + + +GF P S+ E + + Sbjct: 61 VLYPMFCGYIFVGGRFSWLELMAENYITAAVGFPDEFGRRRPAPISDYEMAKLREMSGGL 120 Query: 116 RPVSSV-----FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVEL 168 P F VGE ++ GPFA + + K+R V + +F R V+L Sbjct: 121 IPHRRSVNTHRAFRVGEMAAIAAGPFAHQVAQIAGLHGTKAR--VFLNLFNGTREVEVDL 178 Query: 169 AYNQV 173 V Sbjct: 179 DMLDV 183 >gi|323483812|ref|ZP_08089191.1| transcription antiterminator [Clostridium symbiosum WAL-14163] gi|323692776|ref|ZP_08107004.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum WAL-14673] gi|323402897|gb|EGA95216.1| transcription antiterminator [Clostridium symbiosum WAL-14163] gi|323503218|gb|EGB19052.1| hypothetical protein HMPREF9475_01867 [Clostridium symbiosum WAL-14673] Length = 192 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 7/157 (4%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++Q + E + + S +S + E+ + G E+ FP Sbjct: 1 MSWYVLQCRTGREGEIIRSCRQHIS----ADALKEVFSFRCERLWRTDGVWKLVEKEMFP 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV +++ DK+ ++ K++ + V + E E + ++ S Sbjct: 57 GYVFLESSRPDKLSEELEAYRKILRVMEEPGYLISVYE-EEEEYLRKLCGERHYLKMSFG 115 Query: 123 FEVGERVC--VSDGPFASFNGIVKNVDEEKSRVHVEV 157 ++ E+ +++GP + D + + + Sbjct: 116 YKDKEKGRSFITEGPLKGLENQIAKYDWHRRFAQLRI 152 >gi|60680713|ref|YP_210857.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253563454|ref|ZP_04840911.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60492147|emb|CAH06910.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251947230|gb|EES87512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162257|emb|CBW21802.1| putative transcriptional regulator [Bacteroides fragilis 638R] Length = 174 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 18/174 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+ S E++ + + R R+ +P ++ +GR + Sbjct: 16 HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREALCPQIAR 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122 VLI ++D I+ + G + + + + V + Sbjct: 67 CVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDTAVEWIPD 121 Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E V V+ GP G + D R+ + G V + +EK Sbjct: 122 CLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEWIEK 173 >gi|301162692|emb|CBW22239.1| putative LPS-related regulatory protein [Bacteroides fragilis 638R] Length = 176 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V EKK E + G+++ + + +K F Sbjct: 15 WYAVYTAPRAEKKVKEQLDK----IGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVH- 69 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV-EAAVQRPVSSVFF 123 ++ + + V L + + ++E + + + F Sbjct: 70 ------ISSEEIAHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEF 123 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 G V V G + + + +++ + V G Sbjct: 124 VPGTVVRVISGQLQGLEAELVD-CQGNNKLLLRVEGLG 160 >gi|237732782|ref|ZP_04563263.1| predicted protein [Mollicutes bacterium D7] gi|229384152|gb|EEO34243.1| predicted protein [Coprobacillus sp. D7] Length = 165 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 17/173 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V+SN K + ++ R IP V + +K + F Sbjct: 1 MNWYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQAKKKTTKD--MFD 50 Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 Y+ +K+ + D + +I L E S + + EIE N ++ Sbjct: 51 NYIFVKSDLKQNDFNDLLLSMKDKNDGLIKQLENAE-VSALREKEIEFFNNILDKDNVAR 109 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 VS + E G+ + +++GP + + V + +++ F R + + Sbjct: 110 VSVGYQEEGKTI-ITEGPLLHYQDHIVRVMKHHCTAQLDLPFFDRKIILGVEL 161 >gi|307694396|ref|ZP_07636633.1| NusG antitermination factor [Ruminococcaceae bacterium D16] Length = 165 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 14/164 (8%) Query: 9 QVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK 68 QV + E +++ L +P E G PGYV + Sbjct: 2 QVTTGQETGVRDAL---------QTLGIRAAVPREERAIRSGGGWTTKVYTLLPGYVFLA 52 Query: 69 AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGE 127 + + Y+ +K P V+ FLG + ++ + S V Sbjct: 53 LEYSAENYYRVKAIPHVLRFLGPNGLSPSYLTHLEVEWLRLLDNGGEVLKPSRVETLPEG 112 Query: 128 RVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVELA 169 V + +G F V +D +K R VE+ + G + + L+ Sbjct: 113 GVRIVEGVLRHFP--VSRIDLDKRARRAKVEISLCGELKTLTLS 154 >gi|307108796|gb|EFN57035.1| hypothetical protein CHLNCDRAFT_51331 [Chlorella variabilis] Length = 1295 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F+ G++V V+ G F F G V V + R+ E+ IFG+ T VEL+ + V Sbjct: 759 FQPGQQVAVTQGNFRDFEGTV--VAAQGGRLTAELDIFGKRTRVELSPSDV 807 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 5/26 (19%), Positives = 13/26 (50%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS 29 W+ ++V + EK+ E++ + Sbjct: 128 HWWALRVKAGREKQVAEALERLVVEL 153 >gi|256839226|ref|ZP_05544736.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256740145|gb|EEU53469.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 354 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+GR V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLEKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|183222752|ref|YP_001840748.1| putative transcription antitermination protein NusG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912784|ref|YP_001964339.1| transcription antiterminator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777460|gb|ABZ95761.1| Transcription antiterminator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781174|gb|ABZ99472.1| Putative transcription antitermination protein nusG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 179 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYIV EKK E + E +P + R P Y Sbjct: 13 WYIVYTKPRAEKKLSELLRK---------YHIENYLPIRKERKKWTDRFKWIHVPVLPSY 63 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--RPVSSVF 122 + ++ V ++ P + F+ P+ V ++++ + ++ + + + Sbjct: 64 IFVRIVFWRDKNKVLQ-LPGSVQFVFHKGQPAIVEQNDLDVLEKGLQEYAESLKMNPELL 122 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + G+ V + DG F + V K++ V I G T Sbjct: 123 LQKGKLVRIIDGSFVGKTMEIIKV---KNKTLVVCRIPGVET 161 >gi|160889802|ref|ZP_02070805.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492] gi|156860794|gb|EDO54225.1| hypothetical protein BACUNI_02233 [Bacteroides uniformis ATCC 8492] Length = 206 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E AV + +P + VS+RKG+KV + Sbjct: 38 WHAMRATYRRELDAVHLLEKE---------NLGCFVPMQYKVSIRKGKKVRTLVPVIRNL 88 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 V + A +D + T + D E++ + Sbjct: 89 VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 148 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G RV ++ G FA GI V + R V + I G Sbjct: 149 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 188 >gi|224539462|ref|ZP_03680001.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus DSM 14838] gi|224518920|gb|EEF88025.1| hypothetical protein BACCELL_04367 [Bacteroides cellulosilyticus DSM 14838] Length = 179 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + +P + +S++KG+KV Sbjct: 10 WYAMRATYRREPDAMRLLEKEK---------LGCFVPMQYKISIKKGKKVRVLVPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A ++ + T ++DSE++ + Sbjct: 61 LFVHACPSEVKRIKSQVTYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLMYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F GI V + R V V I G Sbjct: 121 LNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVVAIQG 160 >gi|270294077|ref|ZP_06200279.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275544|gb|EFA21404.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 178 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E AV + +P + VS+RKG+KV + Sbjct: 10 WHAMRATYRRELDAVHLLEKES---------LGCFVPMQYKVSIRKGKKVRTLVPVIRNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 V + A +D + T + D E++ + Sbjct: 61 VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G RV ++ G FA GI V + R V + I G Sbjct: 121 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160 >gi|91217294|ref|ZP_01254255.1| transcription activator or transcription antitermination factor [Psychroflexus torquis ATCC 700755] gi|91184637|gb|EAS71019.1| transcription activator or transcription antitermination factor [Psychroflexus torquis ATCC 700755] Length = 159 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 13/155 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+++ EKK + +L+RSG++ P+ V V RK E P Sbjct: 7 KKWFVLYTKPRGEKK----LSEQLNRSGIEAY-----CPTRTEVRVWSDRKKKVEMPVLP 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 +L+K +K ++P I +L PS VT E++ + + + + Sbjct: 58 SMLLVKIE--NKQRAKALESPLAIRYLFWNGKPSVVTQVEVDTLRSILGDSKFESHELDQ 115 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+++ +++ F + G V+ V+ K V + Sbjct: 116 LRPGQKLDMTELGFENIEGTVQYVN--KKECWVVL 148 >gi|317478832|ref|ZP_07937983.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316905008|gb|EFV26811.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 178 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E AV + +P + VS+RKG+KV + Sbjct: 10 WHAMRATYRRELDAVHLLEKE---------NLGCFVPMQYKVSIRKGKKVRTLVPVIRNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 V + A +D + T + D E++ + Sbjct: 61 VFVHARPSDVQRVKSQITYLQYITDTRSGQKIIIPDHEMQRFIAVAGTYNDHLLYFQPEE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G RV ++ G FA GI V + R V + I G Sbjct: 121 LNLSKGTRVRITGGDFAGQEGIFLKVKGARDR-RVVIEIQG 160 >gi|237732781|ref|ZP_04563262.1| nusG antitermination factor [Mollicutes bacterium D7] gi|229384151|gb|EEO34242.1| nusG antitermination factor [Coprobacillus sp. D7] Length = 163 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 11/171 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+ + + KK V ++ +++ + IP R + +P Sbjct: 1 MYWYVARCKTGRTKKLVSTLNKQVNMN--------AFIPKSERCFGRGETAEFIVKEIYP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 YV IK+ + + + + SE + ++ ++ Sbjct: 53 DYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTYPLTSEEQSLLEKLLDNTDTIKH 112 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + V R +DGP ++K VD+ + ++ IF V + Y Sbjct: 113 TKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEIFTGKLLVAIDY 163 >gi|147918706|ref|YP_687571.1| transcription antitermination protein NusG [uncultured methanogenic archaeon RC-I] gi|110622967|emb|CAJ38245.1| 50S ribosomal protein L26E [uncultured methanogenic archaeon RC-I] Length = 164 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 31/169 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ +N E+ I + LD + + +P E GYV Sbjct: 16 FAVKTTANQERSVANLIAMVTRKENLD--IRSVLVPEE-----------------LKGYV 56 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ M + V IK+ P + + + V + Sbjct: 57 LVESPMAEIVEDCIKNIPHAKAVVRGASSITEVQHFLAPK------------PTVTGISE 104 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V ++ GPF VK +DE K + VE+ PV + + V Sbjct: 105 GDIVELTAGPFKGEKARVKRIDEAKEEITVELSEAMVPIPVTVRGDIVR 153 >gi|301309061|ref|ZP_07215006.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300833087|gb|EFK63712.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 370 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ +K K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDKISPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV I A + G ++D E+E + + Sbjct: 83 TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAVS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPFA V V V V I Sbjct: 143 YSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193 >gi|325300526|ref|YP_004260443.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324320079|gb|ADY37970.1| NGN domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 500 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 21/167 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W++V E + I G + E+ P+ V VR+G ++ FF G Sbjct: 11 HWFLVCTKPGHEPELCLLIERE---KGKIRNILEVYCPTHTKVYVRRG-DNEQQQPFFNG 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----------------PSPVTDSEIEHI 106 YV + A V + + ++ + + Sbjct: 67 YVFVLATQDALVEFLRDNNSDAYIWYNRKCTPDEKATVCTIPESQMRAFRDYNENYADKV 126 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 + V++ E E V V DGP A G + ++K V Sbjct: 127 IVLERPYTDYAVNAKTDEPNEIVRVVDGPLAGCEGYICRFHKKKGLV 173 >gi|119719322|ref|YP_919817.1| NusG antitermination factor [Thermofilum pendens Hrk 5] gi|119524442|gb|ABL77814.1| NusG antitermination factor [Thermofilum pendens Hrk 5] Length = 157 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 35/173 (20%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 R+Y ++V S E + + R + + G Sbjct: 10 RFYALRVTSGQEYNVAQLLYRRAASG-------------------KYKVYSILVVPGLKG 50 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 V +++ + V G + + ++E ++ Sbjct: 51 MVFVESDALYEAQRLAYGLKHVRGVVRGA------------VSLQEMEGLLKPKPLVDQL 98 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV--VIFGRVTPVELAYNQVE 174 VG+ V + GPF G + +D+ ++ V VE+ +F V PV + + ++ Sbjct: 99 NVGDFVEIIRGPFTGMRGRIVGIDKSRNEVKVELAEAVF--VLPVTINADDIK 149 >gi|6478916|gb|AAF14021.1|AC011436_5 unknown protein [Arabidopsis thaliana] Length = 332 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + A + G V V G FA F G +K ++ + ++ V +FG+ T Sbjct: 258 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 317 Query: 165 PVELAYNQV 173 VE+ N++ Sbjct: 318 LVEIDINEL 326 >gi|262382326|ref|ZP_06075463.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295204|gb|EEY83135.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 354 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+GR V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLRKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|329963040|ref|ZP_08300820.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328529081|gb|EGF56011.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 178 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 14/158 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + +P + +S++KG+KV + Sbjct: 10 WYAMRATYRREPDAMRLLEKE---------HLGCFVPMQYKISIKKGKKVRALVPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A +D + + D+E++ + Sbjct: 61 LFVHARPSDLKRVKSQVAYLQYITDTRSGEKIIIPDNEMQRFIAVAGTYNDHLLYFQPEE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 + G +V V+ G F G+ V + RV V + Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGVFLKVKGARDRRVIVAI 158 >gi|307942421|ref|ZP_07657772.1| putative transcription termination factor NusG [Roseibium sp. TrichSKD4] gi|307774707|gb|EFO33917.1| putative transcription termination factor NusG [Roseibium sp. TrichSKD4] Length = 206 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 11/172 (6%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W +V CE++A + + + L E P R + + + F Y Sbjct: 41 WGVVYANPQCERRAFAGLINQGVVAHLPEERIERVQP-------RSKKTIVVNKPMFTRY 93 Query: 65 VLIKAVM-TDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 + + + T+++ V G L + +P + E+ ++ Q+ +R Sbjct: 94 LFAGIDRQAGQDWSTVRECDGVEGVLSLDSAGSPYLIAAHEMVALIKQL-DTGERIADGT 152 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F +VG+ + + G FA F V + V+ E +FGR T ++ + + Sbjct: 153 FIKVGQSLLLPKGVFAKFKMTVTAYKPDAETVYGEFSLFGRKTRIKTTVDDL 204 >gi|298374772|ref|ZP_06984730.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298269140|gb|EFI10795.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 354 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+GR V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLEKELDRRVRLGGPTFDFFAPSFVEMHRREGRLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|169350273|ref|ZP_02867211.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552] gi|169293056|gb|EDS75189.1| hypothetical protein CLOSPI_01017 [Clostridium spiroforme DSM 1552] Length = 165 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 28/177 (15%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ S+ ++ + ++ + E IPS V F Sbjct: 1 MNWYVLYTLSHRTQRILGNLNKKKE--------LEAFIPSYEVCHRYTKEITIK--PMFN 50 Query: 63 GYVLIKAVMTDKVYH-----TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 Y+ IK ++ + ++ +D +I L + + N V + Sbjct: 51 NYIFIKTMLNQEEFNTLLFNMKEDNNGLIRQLKNADTSALTKK--EIEFFNLVLDSKHVV 108 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-----------SRVHVEVVIFGRV 163 S ++ V GP ++ + VD+ R+ + + I G+ Sbjct: 109 RLSHGYQENGITRVISGPLVAYENHIVKVDKHNCCAFLDLIFFDRRIKLGIDILGKK 165 >gi|301308465|ref|ZP_07214419.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300833935|gb|EFK64551.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 354 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+GR V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLRKELDRRVRLGEPTFDFFAPSFVEMHRREGRLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|18398425|ref|NP_566346.1| PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator [Arabidopsis thaliana] gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana] gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana] Length = 333 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + A + G V V G FA F G +K ++ + ++ V +FG+ T Sbjct: 259 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 318 Query: 165 PVELAYNQV 173 VE+ N++ Sbjct: 319 LVEIDINEL 327 >gi|218512771|ref|ZP_03509611.1| transcription antitermination protein NusG [Rhizobium etli 8C-3] Length = 40 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITI 40 M RWYIV YSN EKK E I + + GL+HL +I + Sbjct: 1 MAARWYIVHAYSNFEKKVAEDIENKARQKGLEHLFEKILV 40 >gi|223984605|ref|ZP_03634732.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM 12042] gi|223963452|gb|EEF67837.1| hypothetical protein HOLDEFILI_02028 [Holdemania filiformis DSM 12042] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 14/165 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY V+V + E+ +E + E +P ++ ++ ER FP Sbjct: 1 MRWYFVEVEKHHEEDVLEL---------MKSSPFEAFLPKKQRYFKKQVLVTWVERLLFP 51 Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 G ++I + T + + + ++ E + +N + Sbjct: 52 GTIMITSDFPQAEFTKQFNEWLSQHSDISQWIHLEEKEYFSLQEDERLFLNSLMNEQHVI 111 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 S F +++ V GP +K +D + V I G+ Sbjct: 112 PISTGFLNEKQLIVESGPLQGLESRIKKIDRHQRTAQVRFQICGQ 156 >gi|261368740|ref|ZP_05981623.1| putative transcription termination factor NusG [Subdoligranulum variabile DSM 15176] gi|282569162|gb|EFB74697.1| putative transcription termination factor NusG [Subdoligranulum variabile DSM 15176] Length = 185 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 15/174 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ Y++QV + EK I GRL ++G+ P R GR Sbjct: 1 MSM--YVLQVITGREK----DICGRLRKAGIPAY-----CPRAVRQIRRGGRWQEQTYTL 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 +P Y+ ++ VY+ ++ V+ +LG ++ E + + +PVS Sbjct: 50 YPAYIFVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDGPQPVSK 109 Query: 121 VFFEVGERVCVSDGP---FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + + GP A + ++V + R + + G+ + L++ Sbjct: 110 AVCRADGSLDFTSGPLKRLAELEAL-RSVFRRERRATAVLPLHGKEHKINLSFE 162 >gi|21593340|gb|AAM65289.1| unknown [Arabidopsis thaliana] Length = 333 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT 164 + A + G V V G FA F G +K ++ + ++ V +FG+ T Sbjct: 259 RAPRKATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKET 318 Query: 165 PVELAYNQV 173 VE+ N++ Sbjct: 319 LVEIDINEL 327 >gi|167754736|ref|ZP_02426863.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402] gi|167705568|gb|EDS20147.1| hypothetical protein CLORAM_00240 [Clostridium ramosum DSM 1402] Length = 169 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 17/173 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V+SN K + ++ R IP V + +K + F Sbjct: 5 MNWYVLYVFSNKTNKILSNLNQRKE--------LTAFIPKTEVFHRQAKKKTTKD--MFD 54 Query: 63 GYVLIKAVM-----TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 Y+ +K+ + D + +I L E S + + EIE N ++ Sbjct: 55 NYIFVKSDLKQNDFNDLLLSMKDKNDGLIKQLENAE-VSALREKEIEFFNNVLDKDNVAR 113 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 VS + E G+ + +++GP + + V + +++ F R + + Sbjct: 114 VSVGYQEEGKTI-ITEGPLLHYQDYIVRVMKHHCTAQLDLPFFDRKIILGVEL 165 >gi|150007078|ref|YP_001301821.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|255015297|ref|ZP_05287423.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] gi|256840235|ref|ZP_05545743.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381072|ref|ZP_06074210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377498|ref|ZP_06987450.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] gi|301311259|ref|ZP_07217187.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] gi|149935502|gb|ABR42199.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|256737507|gb|EEU50833.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296249|gb|EEY84179.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265517|gb|EFI07178.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] gi|300830833|gb|EFK61475.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] Length = 220 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFF 61 WYI V + EK + + R++ E+ I S++ + + G++ +R F Sbjct: 39 KHWYIAIVNNKSEKLCRDKLEKRIASQPEGEKDYEVYIASQKEMCLLPSGKRKQVDRIVF 98 Query: 62 PGYVLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 V I+ + + + + G G P E + ++ + Sbjct: 99 RSIVFIRCTDVLRRKEIVHLPYIKRFMVNIAGERSGGIRPVAFIPDEQMVKLRRMLDDSE 158 Query: 116 RPVSSVFFEV--GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 PV + G RV ++ G G V V++ + V + G Sbjct: 159 EPVIIDPRPLPLGARVRINGGKLHGLEGNVLEVEDGNLNFVIRVDLLG 206 >gi|293373743|ref|ZP_06620090.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] gi|292631398|gb|EFF50029.1| transcription termination/antitermination factor NusG [Bacteroides ovatus SD CMC 3f] Length = 243 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 22/157 (14%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--- 58 +P WY ++ EKKA + + P+ V + KG++ Sbjct: 65 SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115 Query: 59 -RFFPGYV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 F Y L V + ++ + + E + + + AA Sbjct: 116 PNIFFAYGTEEQLKSFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMDSLKIICAA 175 Query: 114 VQRPVSSVFFEV-----GERVCVSDGPFASFNGIVKN 145 EV G+ V V+DG F G V Sbjct: 176 DADNTIVSLVEVPKFEKGQLVRVTDGAFKGVIGRVAR 212 >gi|290953568|ref|ZP_06558189.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica URFT1] gi|295313122|ref|ZP_06803811.1| transcription antitermination protein nusG [Francisella tularensis subsp. holarctica URFT1] Length = 57 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 WY+VQV+S EK+ + + +GL + I +P+E VV ++ G+K SER+ Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERK 57 >gi|253578793|ref|ZP_04856064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849736|gb|EES77695.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 101 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASF 139 + + +GTG+ P+ E ++ ++ Q S +RV + GP Sbjct: 6 RKVIGLTKLIGTGDEIVPLVQ-EEIDLLMKIGTDKQLVEMSSGIIENDRVQILAGPLMGM 64 Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G ++ +D K ++E+ +FGR ++ + K Sbjct: 65 EGNIRRIDRHKRTAYLEIEMFGRTVEMKGGLEIIRK 100 >gi|118431766|ref|NP_148437.2| transcription antitermination protein NusG [Aeropyrum pernix K1] gi|152031650|sp|Q9Y9W3|NUSG_AERPE RecName: Full=Putative transcription antitermination protein nusG gi|116063088|dbj|BAA81187.2| putative transcription antitermination protein NusG [Aeropyrum pernix K1] Length = 151 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 33/174 (18%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 R+Y + V S E I R GLD + I +P G Sbjct: 8 RFYAILVTSGAEVNVATIIAERARALGLD--IRSIIVP-----------------PRIKG 48 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV+++A VY + V + E +M V+ V+ P Sbjct: 49 YVILEAHDPGDVYDATRGLRHV--------KRRRPLILKFEEVMKLVKPEVEIPALK--- 97 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVEKI 176 G+ V + G F V +V++ K +V V + R T + ++V + Sbjct: 98 -PGQVVEIVAGAFKGMKARVIDVNQSKGQVTVSLLEPLFRAT-ATIPIDEVRPV 149 >gi|326799431|ref|YP_004317250.1| NGN domain-containing protein [Sphingobacterium sp. 21] gi|326550195|gb|ADZ78580.1| NGN domain-containing protein [Sphingobacterium sp. 21] Length = 169 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 17/173 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W + EKK L E P + RK E F Sbjct: 5 KQWIAIYTRPKWEKKV---------NQFLVQQGIESFCPLIKTKRQWADRKKIVEIPLFS 55 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV + +++ + ++ V+G + P+ +T++EI I + S F Sbjct: 56 SYVFAEVNHSEQ--YQVEQAAGVVGVVYHCGKPAIITEAEINRIKTLLREDYPELESISF 113 Query: 123 FEVG--ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV-VIFGRVTPVELAYNQ 172 ++G R+ V G + + G V V K + V V F ++ +Q Sbjct: 114 DQIGLGHRIKVKTGVLSDWQGEVIMV---KGKSVVMVLEQFNCALIAKVDVSQ 163 >gi|265762678|ref|ZP_06091246.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255286|gb|EEZ26632.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 174 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 18/174 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+ S E++ + + R R+ +P ++ +GR + Sbjct: 16 HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRSREALWPQIAR 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122 VLI ++D I+ + G + + + + V + Sbjct: 67 CVLIWTSLSD-----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDTAVEWIPD 121 Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 E V V+ GP G + D R+ + G V + +EK Sbjct: 122 CLESATMVRVTGGPLTGLVGELDTSDTG-FRIRIRFHSMG-CFRVAVPEEWIEK 173 >gi|297620007|ref|YP_003708112.1| NusG antitermination factor [Methanococcus voltae A3] gi|297378984|gb|ADI37139.1| NusG antitermination factor [Methanococcus voltae A3] Length = 147 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ E++ R R L+ + S GY+ Sbjct: 3 FAVRTTTGQEQNVAEALASRAERENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + ++ KV G + V + E ++ ++ + Sbjct: 44 LVEATNKGAIEELVRQNFKVKGIVPGES---SVKELEHLLTPTKIIESIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KI+ Sbjct: 92 GDVVELVGGPFKGEKARVTRVDKNKEEITLELMEAAVAIPITVGIEQV-KII 142 >gi|329960547|ref|ZP_08298914.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328532611|gb|EGF59401.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 177 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 17/162 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ V+V E + E IP R G+++ Sbjct: 6 NWFAVRVTYGRELVLKAMLDEEK---------IESFIPMRYEYVSRNGKRMRKLVPAIHN 56 Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V I M + P P + D ++ + + + Sbjct: 57 LVFIHCTRKKMDEIKELFGAKVPIRYIMDRETRQPIVIPDEQMRSFILVSGNYDEAVLYL 116 Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 E G++V ++DG F G + ++ RV V + Sbjct: 117 EPMELALVKGQKVRITDGIFKGVIGEFVRIRHDR-RVVVSIE 157 >gi|298378114|ref|ZP_06988049.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298264982|gb|EFI06660.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 232 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ +K K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDKINPSKGLDAELSRRERRG--ETLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV I A + G ++D E++ + + Sbjct: 83 TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMDTLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPFA V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193 >gi|18656144|emb|CAD23070.2| putative termination transcription factor [Haloferax mediterranei] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ + I + + + P YV Sbjct: 4 FAVKTTARQERTVADMIASK-----DFSQIHAVLAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V +++ P G + +G + +E+EH ++ Sbjct: 42 MVEADDDGIVSRVLEEIPHARGLVESGGMVGTSSMAEVEHFLSPTPDVE-------GIAE 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 95 GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143 >gi|160891065|ref|ZP_02072068.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492] gi|156859286|gb|EDO52717.1| hypothetical protein BACUNI_03512 [Bacteroides uniformis ATCC 8492] Length = 243 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 22/157 (14%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--- 58 +P WY ++ EKKA + + P+ V + KG++ Sbjct: 65 SPHWYALRTTYGREKKAYDY---------MTAKGITAFYPTTDTVKLIKGKRKIVTESRL 115 Query: 59 -RFFPGYV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 F Y L V + ++ + + E + + + AA Sbjct: 116 PNIFFAYGTEEQLKTFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIICAA 175 Query: 114 VQRPVSSVFFEV-----GERVCVSDGPFASFNGIVKN 145 EV G+ V V DG F G V Sbjct: 176 DADNTIVSLIEVPKFEKGQLVRVIDGAFKGVIGRVAR 212 >gi|99080639|ref|YP_612793.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040] gi|99036919|gb|ABF63531.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040] Length = 193 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 25/190 (13%) Query: 6 YIVQVYSNCEKKAVESIGG---------RLSRSGLDHLVTEI-----TIPSERVVSVRKG 51 Y + E + + RL + + + +P + Sbjct: 5 YAINTTRGKEFAVRDDLKAMGVNPWVPVRLGSRYVKEKRSAVWYDAAYVPKLMFAVIPAI 64 Query: 52 RKVNSERRFFPG---YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 + L + + H K T V+ + + ++E Sbjct: 65 IWRDVLEHKHVIGKPVALSRLDIEGIPGHVKKSTGAVVPPVPGLNDFRRAVEAEYADAER 124 Query: 109 QVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNV----DEEKSRVHVEVVIFGRVT 164 + F+ G+ + + P+ F+ V ++ +++ VE+ IFGRVT Sbjct: 125 ARANSE----YQCQFKPGQALELLCPPWEGFSATFAKVIKHAHDDYAKLRVELEIFGRVT 180 Query: 165 PVELAYNQVE 174 P+++ ++V+ Sbjct: 181 PLDVDPDRVK 190 >gi|150010377|ref|YP_001305120.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149938801|gb|ABR45498.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 351 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+G V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLKKELDRRVRLGEPTFDFFAPSFVEMRRREGHLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|297833678|ref|XP_002884721.1| PTAC13 [Arabidopsis lyrata subsp. lyrata] gi|297330561|gb|EFH60980.1| PTAC13 [Arabidopsis lyrata subsp. lyrata] Length = 337 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 G V V G FA F G +K ++ + ++ V +FG+ T VE+ N Sbjct: 270 ETKDSKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDIN 329 Query: 172 QV 173 ++ Sbjct: 330 EL 331 >gi|255012360|ref|ZP_05284486.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] Length = 351 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ C K + + L R L + PS + R+G V + R Sbjct: 17 RWYVL-SLPACHKGPAKGLKKELDRRVRLGEPTFDFFAPSFVEMRRREGHLVETHRPLLY 75 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN--PSPVTDSEIEHIMNQVEAAVQRPVSS 120 YV I++ + + + +D P V+D E+E++ + Sbjct: 76 NYVFIRSSVYEI-FRLKRDFPLYNFLPSVDGRGSYPFVSDREMENLRWVARSYSDELPVY 134 Query: 121 VFF----EVGERVCVSDGPFASFNGIVK 144 V G+R+ ++DG F V Sbjct: 135 VPEAGYLRKGDRIRITDGRFKGVEASVV 162 >gi|325299826|ref|YP_004259743.1| putative transcriptional regulator UpxY-like protein [Bacteroides salanitronis DSM 18170] gi|324319379|gb|ADY37270.1| putative transcriptional regulator UpxY-like protein [Bacteroides salanitronis DSM 18170] Length = 355 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 9/149 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY++ + S+ A R R V + PS V KG+ V ++ Sbjct: 20 RWYVMLLPSSHRGLATGLKEERERRMKYGEPVFDYFAPSYVEVKKIKGKFVKTDCPLLYN 79 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV I+A D+++H ++ P+ + M ++ + + Sbjct: 80 YVFIRAT-VDEIFHLKRNLPQYNFLPKVKGEKEDYYPYLSDRAMENLKWVADSYSNVLPV 138 Query: 124 EV--------GERVCVSDGPFASFNGIVK 144 V G+RV +++G F V Sbjct: 139 YVPKSETLVKGDRVRITEGQFKGAEATVV 167 >gi|292654882|ref|YP_003534779.1| transcription antitermination protein NusG-like protein [Haloferax volcanii DS2] gi|291370778|gb|ADE03005.1| transcription antitermination protein NusG homolog [Haloferax volcanii DS2] Length = 150 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ + I + + + P YV Sbjct: 4 FAVKTTARQEQTVADMIATKEF-----EQIHAVLAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V +++ P G + +G + +E+EH ++ Sbjct: 42 MVEADDDGIVTRVLEEIPHARGLVESGGAVGTSSMAEVEHFLSPTPDVE-------GIAE 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 95 GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143 >gi|223985895|ref|ZP_03635932.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM 12042] gi|223962136|gb|EEF66611.1| hypothetical protein HOLDEFILI_03238 [Holdemania filiformis DSM 12042] Length = 171 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY ++ E++ E++ + + P + + + + R FP Sbjct: 1 MSWYFIETERFQEEQVKETLL---------NSQFDAFAPKKEMYFKKGDLTTLTLRFLFP 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS-----EIEHIMNQVEAAVQRP 117 G VLI + + + G+ + + + Q+ + Sbjct: 52 GTVLIHDPASPPQFAKKLNAWLDRNQPGSEGIHREADAYFSLASDEKETLEQLLNEKKIL 111 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 S + + V GP ++ + + + + + G+ P+ L +EK Sbjct: 112 QFSTGIIRNKELHVLKGPLQGHEKEIQKIKRHQRLATLPIKLCGQTIPLILGLEVIEK 169 >gi|294674459|ref|YP_003575075.1| hypothetical protein PRU_1784 [Prevotella ruminicola 23] gi|294472582|gb|ADE81971.1| conserved domain protein [Prevotella ruminicola 23] Length = 321 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 65/183 (35%), Gaps = 20/183 (10%) Query: 4 RWYIVQVYS-NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY++ S + E+K +++ +P + V + ++ + Sbjct: 10 KWYVLGCLSVHHEEKVRDALRKA---------GFRSHVPMKYEVKTVRRQEQRTMVPAIT 60 Query: 63 GYVLIKAVMTDKVYHTI----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 G + ++A + + ++ V D +E + ++ Sbjct: 61 GLIFVRATEEALKEYIRHKSRESIYMRKSTFSNKQDYLTVPDYAMERFIEFTNIRQEKIT 120 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT-PVELAYNQV 173 + + GE++ + G + + G + ++++ H+ V I G + VEL V Sbjct: 121 YFKPEELNLKEGEKIRIKGGIYDGYEGTILRFKGKRNK-HLVVQIPGVIIAAVELEPELV 179 Query: 174 EKI 176 E + Sbjct: 180 EPL 182 >gi|298483361|ref|ZP_07001539.1| transcriptional regulator [Bacteroides sp. D22] gi|298270490|gb|EFI12073.1| transcriptional regulator [Bacteroides sp. D22] Length = 140 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 46 VSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105 + R+ + P V + +++ T + P+ + D ++ Sbjct: 1 MHQWSDRRKMVDTVLLPMMVFVHVNPKERMEVLSFSTVSRYMVMRGESTPAVIPDEQMAR 60 Query: 106 IMNQVEAAVQRPVS-SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 ++ + + GE+V V GP + G + V KS++ V + + G Sbjct: 61 FRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVTV-GGKSKIAVRLNMLG 116 >gi|70607204|ref|YP_256074.1| transcription antitermination protein NusG [Sulfolobus acidocaldarius DSM 639] gi|140606|sp|P27341|NUSG_SULAC RecName: Full=Putative transcription antitermination protein nusG gi|99272|pir||S16484 hypothetical protein 3 - Sulfolobus solfataricus gi|48885|emb|CAA41431.1| unnamed protein product [Sulfolobus solfataricus] gi|453445|emb|CAA54645.1| unnamed protein product [Sulfolobus acidocaldarius] gi|68567852|gb|AAY80781.1| NusG [Sulfolobus acidocaldarius DSM 639] gi|1095513|prf||2109236H ORF Length = 152 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 30/171 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y+++V E + R+ + ++ + + +P GYV Sbjct: 10 YVLRVTGGQEINVALILEERIKTNNINE-IFSVVVP-----------------PNIKGYV 51 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V V G V V + V+ + Sbjct: 52 ILEATGPHVVKLISSGIRHVKGVAHG------------LIQKEDVTKFVSKSVALPAVKE 99 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ V V GPF V V+ K+ V + ++ V + QV+ + Sbjct: 100 GDLVEVISGPFRGMQAQVVRVESTKNEVVLNILESSYPVQVTVPLEQVKPV 150 >gi|110667210|ref|YP_657021.1| transcription antitermination protein NusG [Haloquadratum walsbyi DSM 16790] gi|109624957|emb|CAJ51370.1| transcription antitermination protein homolog [Haloquadratum walsbyi DSM 16790] Length = 150 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 29/169 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ ++ E+ + I R + + + P YV Sbjct: 4 FAVKTTASQERTVADMIATRE-----EPDIHAVLAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ + +++ P G + +G T +E+EH ++ Sbjct: 42 MVESDSNAAISRVLEEIPHARGLVKSGGQAGKSTIAEVEHFLSPTPDVE-------GIAE 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 95 GDIVELIAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 143 >gi|329964892|ref|ZP_08301900.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328524533|gb|EGF51601.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 181 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 11/159 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY +V K E I L + G++ + T+ ER + K F Sbjct: 9 HWYAFKV---FYNKVFE-IEELLKKDGIETFIPCETVIVERGEVKKSICKPVIASLLFFR 64 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVS 119 + + ++ +G + P + + E+ M + Q S Sbjct: 65 --STEQQALHQQQCLLERVILYTRLVGWQKLPFAIPEREMNLFMLVATSGEQGLEYLCDS 122 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + +G+ V V DGPF G + + R+ V + Sbjct: 123 PRDYRIGQHVSVIDGPFKGAEGYIHRIKG-NRRLIVAIE 160 >gi|262172003|ref|ZP_06039681.1| transcriptional activator RfaH [Vibrio mimicus MB-451] gi|261893079|gb|EEY39065.1| transcriptional activator RfaH [Vibrio mimicus MB-451] Length = 121 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 3/119 (2%) Query: 55 NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 + FP Y+ ++ D + T++ T V+ F+ G +P + I + Q++ Sbjct: 1 MVQEPLFPSYMFVRFDFEDGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQ-LKQLDCE 59 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + + E G+ V V+ G FA I + D + R + V + + P+ + Sbjct: 60 QLKGSARQLPEKGQTVRVARGQFAGVEAIYQEPDGDT-RSIMLVKMISQQVPMSIENTD 117 >gi|255010638|ref|ZP_05282764.1| putative transcriptional regulator Updx-like protein [Bacteroides fragilis 3_1_12] gi|313148449|ref|ZP_07810642.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137216|gb|EFR54576.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 179 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 19/163 (11%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY ++ YS E E + R ++ +P R RK+ Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56 Query: 62 PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V + A ++ P P + + ++ + ++ Sbjct: 57 HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRESCQPITIPEVQMRSFIAVAGNYDEQVV 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S+V + G+RV V+ G F G + ++ RV V + Sbjct: 117 YLDPSAVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158 >gi|218132130|ref|ZP_03460934.1| hypothetical protein BACEGG_03758 [Bacteroides eggerthii DSM 20697] gi|217985674|gb|EEC52016.1| hypothetical protein BACEGG_03758 [Bacteroides eggerthii DSM 20697] Length = 178 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E AV +G + +P + V+V+KG+KV Sbjct: 10 WYAMRATYRREPDAVRLLGKE---------NMDCFVPMQYKVTVKKGKKVRILVPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A + K T + D+E+ + + Sbjct: 61 IFVHACPSALKRVKSKVTYLQYITDTRSGEKIIIPDNEMRRFIAVAGTYSDQLLYFQPEE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F GI V + R V + I G Sbjct: 121 VNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 160 >gi|319901772|ref|YP_004161500.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319416803|gb|ADV43914.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] Length = 178 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + +P + VS+R+GRKV + Sbjct: 10 WYAMRATYRREPDAMRLLEKE---------QIGCFVPMQYKVSLRRGRKVRALVPVVHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A+ ++ + + + D E+ + Sbjct: 61 LFVHALPSELKRVKSQVSYLQYITDTRSGRKIIIPDHEMRRFIAVAGTYNDHLLYFRPED 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V V+ G F GI V + R V V I G Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160 >gi|313127228|ref|YP_004037498.1| LSU ribosomal protein l24a [Halogeometricum borinquense DSM 11551] gi|312293593|gb|ADQ68053.1| LSU ribosomal protein L24A [Halogeometricum borinquense DSM 11551] Length = 151 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 31/169 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ + I R + + P YV Sbjct: 7 FAVKTTARQEQTVADMIATREEAE-----IHAVLAPDS-----------------LTSYV 44 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + +++ P G +G G+ S + + E + Sbjct: 45 MVEADNNAVINRVLEEIPHARGLVGDGQATSSMAEVEH---------FLSPTPDVEGIAE 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 96 GDIVELVAGPFKGEKARVQRIDETKDQVTVELYEATVPIPVTVRGDQIR 144 >gi|218672066|ref|ZP_03521735.1| transcription antitermination protein NusG [Rhizobium etli GR56] Length = 31 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/31 (70%), Positives = 26/31 (83%) Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +DEE+SR+ VEV IFGR TPVEL Y QVEK+ Sbjct: 1 MDEERSRLKVEVSIFGRATPVELEYAQVEKV 31 >gi|317480580|ref|ZP_07939669.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316903273|gb|EFV25138.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 244 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 21/166 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY ++ EKKA + I P+ V + G++ E P Sbjct: 69 HWYALRTTYGREKKAYDYII---------SKGGTAFYPTLSTVKLVDGKRKTVEESRIPN 119 Query: 64 YVLIKAVMTDKVYHTIKDT-------PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 + + +G P + D++IE + +A Sbjct: 120 LFFAYGTEEEIKSFVYDNVNLHYLRFYYRHFHIGNKIEPLIIPDNQIESLRIICKADADD 179 Query: 117 PVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + S F+ G+ V + +G F GIV + RV + + Sbjct: 180 IIVSTDEVQKFQKGQAVRIVEGKFKGVTGIVARYQG-QQRVGIVID 224 >gi|319901939|ref|YP_004161667.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319902283|ref|YP_004162011.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319902419|ref|YP_004162147.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319416970|gb|ADV44081.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319417314|gb|ADV44425.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319417450|gb|ADV44561.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] Length = 178 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + + +P + VS+R+GRKV + Sbjct: 10 WYAMRATYRREPDAMRLLEKE--------QIG-CFVPMQYKVSLRRGRKVRALVPVVHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A+ + + + + D E++ + Sbjct: 61 LFVHALPSALKRVKSQVSYLQYITDTRSGRKIIIPDHEMQRFIAVAGTYNDHLLYFRPED 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V V+ G F GI V + R V V I G Sbjct: 121 LNLSKGTKVRVTGGDFEGQEGIFLKVKGARDR-RVVVQIQG 160 >gi|126738215|ref|ZP_01753936.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6] gi|126720712|gb|EBA17417.1| hypothetical protein RSK20926_06762 [Roseobacter sp. SK209-2-6] Length = 202 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSERRF 60 RW++++V E + + V E +P+ + RK+ ++ Sbjct: 32 RWFVLKVQPMKEFEVETWLAH-------QEGVLEAWLPTNKAWRNQARGHRRKIQYRQKI 84 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 PGYV + + + + E M ++ VQ+ + Sbjct: 85 APGYVFGCVERRVAWDLLKRRSNGKVLGVVGHNGRPLPVPKEQMRAMKKLPKIVQKIYAD 144 Query: 121 VF----FEVGERVCVS-DGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G++ + DGP + V V+ + V + G +++ Q+E+ Sbjct: 145 AQSAKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLER 201 Query: 176 I 176 + Sbjct: 202 L 202 >gi|253566342|ref|ZP_04843796.1| UpdY [Bacteroides sp. 3_2_5] gi|251945446|gb|EES85884.1| UpdY [Bacteroides sp. 3_2_5] Length = 179 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY ++ YS E E + R R+ +P R RK+ Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56 Query: 62 PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V + A ++ P P + + ++ + ++ Sbjct: 57 HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S V + G+RV V+ G F G + ++ RV V + Sbjct: 117 YLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158 >gi|317474033|ref|ZP_07933312.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|316909875|gb|EFV31550.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 178 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E AV +G + +P + V+V+KG+KV Sbjct: 10 WYAMRATYRREPDAVRLLGKE---------NMDCFVPMQYKVTVKKGKKVRILVPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A + K T + D+E+ + + Sbjct: 61 IFVHACPSTLKRVKSKVTYLQYITDTRSGEKIIIPDNEMRRFIAVAGTYSDQLLYFQPEE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F GI V + R V + I G Sbjct: 121 VNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 160 >gi|301310806|ref|ZP_07216740.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300831206|gb|EFK61842.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 370 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ ++ K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV + A + G ++D E++ + + Sbjct: 83 TKRPLLYNYVFVHASEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPF V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193 >gi|53714952|ref|YP_100944.1| putative transcriptional regulator UpxY-like protein [Bacteroides fragilis YCH46] gi|52217817|dbj|BAD50410.1| putative transcriptional regulator UpxY homolog [Bacteroides fragilis YCH46] gi|301164392|emb|CBW23950.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 208 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 19/164 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V+V + E E + D E IP V+ R+V Sbjct: 38 WYAVRVTYSRELALKEYL---------DGECIENFIPMHYEYIVKNERRVRKLVPAVHNL 88 Query: 65 VLIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-----P 117 V I++ D++ + T + + V + V + + Sbjct: 89 VFIRSSRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLVYLE 148 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 S+V F G+RV V+ G FA G V ++ V V I G Sbjct: 149 PSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 189 >gi|45358997|ref|NP_988554.1| transcription antitermination protein NusG [Methanococcus maripaludis S2] gi|45047872|emb|CAF30990.1| LSU ribosomal protein L24A [Methanococcus maripaludis S2] Length = 146 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + EK ES+ R + L+ + S GY+ Sbjct: 3 FAVRTTTGQEKNVAESLASRAEKENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 LI+A + ++ + KV G + + V + + ++ + + Sbjct: 44 LIEAANKGALDELVRKSFKVKGIVPG---ETSVNELDHLLTPTKIIEHIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KI+ Sbjct: 92 GDVVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGIEQV-KII 142 >gi|255011343|ref|ZP_05283469.1| putative transcriptional regulator Updx-like protein [Bacteroides fragilis 3_1_12] gi|313149155|ref|ZP_07811348.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137922|gb|EFR55282.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 179 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 19/163 (11%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY ++ YS E E + R ++ +P R RK+ Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVKN---------FLPMRYEYVFRGERKIRKLVPVV 56 Query: 62 PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V + A ++ P P + + ++ + ++ Sbjct: 57 HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S+V + G+RV V+ G F G + ++ RV V + Sbjct: 117 YLDPSTVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158 >gi|146304396|ref|YP_001191712.1| transcription antitermination protein NusG [Metallosphaera sedula DSM 5348] gi|145702646|gb|ABP95788.1| LSU ribosomal protein L24A [Metallosphaera sedula DSM 5348] Length = 153 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 34/173 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+V E + R+ +G+ V I +P GYV Sbjct: 10 YAVKVTGGQEISVAIMLEERIKTNGIGD-VYSIIVP-----------------PGLKGYV 51 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ V I V G + + V + + + Sbjct: 52 IVESSGPHVVKFIIAGIRHVRGVAPG------------LVPKDDIMKMVSKKQTGPSIKT 99 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176 G+ V V GPF V + + ++ V + I P V + +Q+ + Sbjct: 100 GDMVEVVSGPFRGMQAQVMSYNADRG--EVVLNILESAFPLQVTIPVDQIRPV 150 >gi|124028448|ref|YP_001013768.1| transcription antitermination protein NusG [Hyperthermus butylicus DSM 5456] gi|123979142|gb|ABM81423.1| transcription antiterminator [Hyperthermus butylicus DSM 5456] Length = 172 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 31/155 (20%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 PR Y V+ + E + R + + I +P Sbjct: 23 PRLYAVRTVAGREIDVALIMEQRARDQNMP--IYAIIVP-----------------PQIK 63 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV+++ + I+ G + V Sbjct: 64 GYVIVETPAAFYATNAIQGIRYAKGVVPGVLRYEDVERLLKPKA------------VIET 111 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G+ V + GPF G V V K+ V + V Sbjct: 112 LKPGDIVEIISGPFRGMKGQVVRVSPSKNEVVLNV 146 >gi|150402603|ref|YP_001329897.1| transcription antitermination protein NusG [Methanococcus maripaludis C7] gi|150033633|gb|ABR65746.1| NusG antitermination factor [Methanococcus maripaludis C7] Length = 146 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + EK ES+ + + L+ + S GY+ Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 LI+A + ++ + KV G + + V++ + ++ + + Sbjct: 44 LIEAANKGALDDLVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K V +E++ P+ + QV KIV Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEVTLELIDAAVPIPITVGVEQV-KIV 142 >gi|53715209|ref|YP_101201.1| putative transcriptional regulator Updx-like protein [Bacteroides fragilis YCH46] gi|265767038|ref|ZP_06094867.1| UpdY [Bacteroides sp. 2_1_16] gi|52218074|dbj|BAD50667.1| putative transcriptional regulator Updx homolog [Bacteroides fragilis YCH46] gi|263253415|gb|EEZ24891.1| UpdY [Bacteroides sp. 2_1_16] Length = 179 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY ++ YS E E + R R+ +P R RK+ Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56 Query: 62 PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V + A ++ P P + + ++ + ++ Sbjct: 57 HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S V + G+RV V+ G F G + ++ RV V + Sbjct: 117 YLDPSVVSMKKGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158 >gi|302794226|ref|XP_002978877.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii] gi|300153195|gb|EFJ19834.1| hypothetical protein SELMODRAFT_418636 [Selaginella moellendorffii] Length = 332 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 57/227 (25%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRS----GLDHLVTEITIPSERVVSVRKGRKVNS 56 M +WY ++V++N E +++E++ L + +V +P +V S + Sbjct: 85 MGMQWYTLRVFTNNEAESMEALRSTLEAEFPDAKFEGVVNGFLLPRCKVWSPIIPTESVV 144 Query: 57 ERR-------FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG-TGENPSPVTDSEIE---- 104 + G++ ++ V+ VY + + V F+G D+++ Sbjct: 145 RGKSRFAMKAMLRGHIFLRCVLEAPVYRHVMNERSVFCFVGAFPYKMKAGYDTKMMKGGY 204 Query: 105 ----------------------------------------HIMNQVEAAVQRPVSSVFFE 124 ++ +V+ Sbjct: 205 PDAHIPAPVPSYQIEALREEAATREREFKLEQQKKKASEDQVLLEVKEVDDLEQRQGHLR 264 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 VG+ V V G + +F G + +V + + +FG T +E+ + Sbjct: 265 VGDMVAVISGAYQNFQGTILEFLPA-GKVKIVLPVFGTDTEIEVDMD 310 >gi|255573929|ref|XP_002527883.1| hypothetical protein RCOM_0085990 [Ricinus communis] gi|223532734|gb|EEF34514.1| hypothetical protein RCOM_0085990 [Ricinus communis] Length = 127 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G V V G FA F G +K ++ + + V +FG+ T +EL ++ Sbjct: 75 GSTVRVVSGTFAEFVGTLKKLNRKTGKATVGFTLFGKETLIELDRREI 122 >gi|150006795|ref|YP_001301538.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|150008233|ref|YP_001302976.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149935219|gb|ABR41916.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149936657|gb|ABR43354.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 370 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ ++ K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV + A + G ++D E++ + + Sbjct: 83 TKRPLLYNYVFVHASENEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPF V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193 >gi|315180818|gb|ADT87732.1| transcriptional activator RfaH [Vibrio furnissii NCTC 11218] Length = 122 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 55 NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 + FP Y+ ++ + T++ T V F+ G P + I + Q+ Sbjct: 1 MVKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIY-ELKQLSTH 59 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + + G+ V V G F I + D E R + V + + P+ + Sbjct: 60 LDDVSDAKMPVRGQEVEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114 >gi|332085009|gb|EGI90191.1| transcriptional activator RfaH [Shigella dysenteriae 155-74] Length = 131 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 + +G++ FP Y+ ++ TI T V F+ G +P+ V + I + Sbjct: 6 KIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQL 65 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + P + G++V +++G F F I D E +R + + + + Sbjct: 66 SVYKPKDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKH 121 Query: 167 ELAYNQVEKI 176 + + K+ Sbjct: 122 SVKNTEFRKL 131 >gi|302382487|ref|YP_003818310.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193115|gb|ADL00687.1| NGN domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 188 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++V + N EK A + + H V +P +R G + R P Y Sbjct: 15 WFVVITHVNQEKLAKYQLERQ------GHAVYMPMVPPSPRARMRNGVPPSV-RPMIPRY 67 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGF----LGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 + ++ + + I T V G G P + IE I + + Sbjct: 68 LFVQVDLDQPGWPAIYSTFGVSEVISSGTGEGRRPRAIPTRFIEEIRAREVNGLVILPEA 127 Query: 117 -----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + F+ G+++ GP A + + + + + +R V + G Sbjct: 128 RKAGPAPVACRFKKGDKLR-WHGPTADYEVVFQQM-VDGNRAEVVFTLMG 175 >gi|60683145|ref|YP_213289.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|18462480|gb|AAL72272.1|AF366394_2 UpdY [Bacteroides fragilis 638R] gi|60494579|emb|CAH09380.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|301164665|emb|CBW24224.1| putative transcriptional regulator [Bacteroides fragilis 638R] Length = 179 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 19/163 (11%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY ++ YS E E + R R+ +P R RK+ Sbjct: 7 KSWYALRITYSR-ELAFKEYLDSRGVRN---------FLPMRYEYVFRGERKIRKLVPVV 56 Query: 62 PGYVLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V + A ++ P P + + ++ + ++ Sbjct: 57 HNLVFVYATRSEVDEMKSTVGASLPIRYIMDRETRQPITIPEVQMRSFIAVAGNYDEQVV 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S V + G+RV V+ G F G + ++ RV V + Sbjct: 117 YLDPSVVSMKRGDRVRVTGGIFEGVEGEFVRIKGDR-RVVVSI 158 >gi|150007203|ref|YP_001301946.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149935627|gb|ABR42324.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 367 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ ++ K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + + YV + A + G ++D E++ + + Sbjct: 83 TRQPLLYNYVFVHASEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPF V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193 >gi|189466124|ref|ZP_03014909.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM 17393] gi|189434388|gb|EDV03373.1| hypothetical protein BACINT_02494 [Bacteroides intestinalis DSM 17393] Length = 178 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + IP + +SV+KG+KV Sbjct: 10 WYAMRATYRRELDAMRLLEKEK---------LGCFIPMQYKISVKKGKKVRVLMPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 V + A ++ + + D++++ + Sbjct: 61 VFVHACPSEVKRVKSQINYLQYITDTRSGQKIIIPDNDMQRFIAVAGTYNDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G RV + G F G+ V + R V + I G Sbjct: 121 LNLSKGTRVRIIGGDFEGQEGLFLKVKGARDR-RVVIEIQG 160 >gi|294660581|ref|NP_853429.2| transcription termination factor NusG [Mycoplasma gallisepticum str. R(low)] gi|7109682|gb|AAF36753.1| transcription antitermination factor NusG [Mycoplasma gallisepticum] gi|284812244|gb|AAP56997.2| transcription termination factor NusG [Mycoplasma gallisepticum str. R(low)] gi|284930926|gb|ADC30865.1| transcription termination factor NusG [Mycoplasma gallisepticum str. R(high)] gi|284931682|gb|ADC31620.1| transcription termination factor NusG [Mycoplasma gallisepticum str. F] Length = 267 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 34/165 (20%) Query: 1 MTPR----WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR------- 49 M+ + WYI + E ++++ ++ + + + + R V Sbjct: 1 MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 60 Query: 50 -----------------------KGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVI 86 + ++ +PGY+ IK M + + +++T + Sbjct: 61 THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 120 Query: 87 GFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCV 131 G +G+ + ++ + + + + Sbjct: 121 GIVGSSGKGAKPIPISSSEELDLLNGESFDQNYRIVITPNAIIEM 165 Score = 41.6 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + ++ ++ +VG V ++ G ++ +G + + + V+V I G++ V+L Sbjct: 201 MSTEKEQVDEAIELKVGHMVDINSGDYSGLSGQISRI-IDNDEYIVDVQILGKLVSVKLN 259 Query: 170 YNQVE 174 Q++ Sbjct: 260 KKQLK 264 >gi|255011104|ref|ZP_05283230.1| putative transcriptional regulator UpxY-like protein [Bacteroides fragilis 3_1_12] Length = 208 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 19/165 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V+V + E + E IP V+ R+V Sbjct: 37 HWYAVRVTYSRELSLKTYLDSES---------IENFIPMRYEYIVKNERRVRKLVPAVHN 87 Query: 64 YVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 V +++ + P P V DS++ M + Q+ Sbjct: 88 LVFVRSCRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLVYL 147 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 S+V F G+RV V+ G FA G V ++ V V I G Sbjct: 148 EPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 189 >gi|149003855|ref|ZP_01828683.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS69] gi|147758189|gb|EDK65192.1| transcription antitermination protein NusG [Streptococcus pneumoniae SP14-BS69] Length = 63 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 W+++Q YS E K E++ R + + + IP++ V + R+ Sbjct: 11 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVQVEKMEREKK 63 >gi|298375194|ref|ZP_06985151.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298267694|gb|EFI09350.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 370 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ ++ K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV + A + G ++D E++ + + Sbjct: 83 TKRPLLYNYVFVHASEDEIFSLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPF V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 193 >gi|303244500|ref|ZP_07330835.1| NusG antitermination factor [Methanothermococcus okinawensis IH1] gi|302485198|gb|EFL48127.1| NusG antitermination factor [Methanothermococcus okinawensis IH1] Length = 146 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ + EK E + R + +D GY+ Sbjct: 3 FAIRTTTGQEKNVAEFLASRAEKEKID-------------------IYSILATEDLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A V ++ T KV G + + + E ++ ++ + Sbjct: 44 LVEAPNKGAVEDLVRKTFKVKGIVPG---EISIDELEHLLSPTKIIESIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF IV VD+ K + +E++ P+ + QV KIV Sbjct: 92 GDVVELVAGPFKGEKAIVTRVDKHKEEITLELMEAAVPIPITVGIEQV-KIV 142 >gi|150401434|ref|YP_001325200.1| transcription antitermination protein NusG [Methanococcus aeolicus Nankai-3] gi|150014137|gb|ABR56588.1| NusG antitermination factor [Methanococcus aeolicus Nankai-3] Length = 146 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ + E E + + + ++ GY+ Sbjct: 3 YAIRTTTGQELNVAEFLAAKAEKEDIE-------------------IYSILATEDLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + I+ T KV G + + V + E ++ + + Sbjct: 44 LVEAPNMGALEDLIRKTFKVKGIVQG---ETSVDELEHLLTPTKIIETIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KI+ Sbjct: 92 GDTVELVAGPFKGERARVIRVDKHKEEITLELMDAAVPIPITVGIEQV-KII 142 >gi|126737096|ref|ZP_01752831.1| transcription antitermination protein NusG [Roseobacter sp. SK209-2-6] gi|126721681|gb|EBA18384.1| transcription antitermination protein NusG [Roseobacter sp. SK209-2-6] Length = 204 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVS---VRKGRKVNSERRFF 61 W++++V E + + G V E +P+ + RKV ++ Sbjct: 33 WFVLKVQPMKEFEVEMWL-------GQQEGVLEAWLPTNKAWRNQARGHRRKVQYRQKIA 85 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 PGYV + + + + E M ++ VQ+ + Sbjct: 86 PGYVFACVERRIAWDLLQRRSNGKVLGVVGYNGRPLPVPEEQMRAMKKLPKIVQKIYAEA 145 Query: 122 F----FEVGERVCVSD-GPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G++ + D GP + V V+ + V + G +++ Q+E+I Sbjct: 146 QSVKLVRPGDKARILDDGPMCDWVVDVTEVNG--GIAKILVPLLG-EREAQISMEQLERI 202 >gi|167755356|ref|ZP_02427483.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402] gi|167704295|gb|EDS18874.1| hypothetical protein CLORAM_00870 [Clostridium ramosum DSM 1402] Length = 166 Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 14/172 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ E K + + IP R+ K N+ + Sbjct: 1 MKDNWYVLFALVAKENKLCSVLRR---------KGLDAFIPKIEYY--RRDIKGNTLKML 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGY+ +++ M + + ++ E + N++ + Sbjct: 50 FPGYIFVRSEMKQSDFDNLLYELGEQRDGLIKQLKDDGVTALRDEEIEMFNKLLNSEGIL 109 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 S F + V GP + + +D+ +++ R L Sbjct: 110 EMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAVLDIEFLNRHILAGLE 161 >gi|281422967|ref|ZP_06253966.1| putative transcription termination factor NusG [Prevotella copri DSM 18205] gi|281402970|gb|EFB33650.1| putative transcription termination factor NusG [Prevotella copri DSM 18205] Length = 223 Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 6/149 (4%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER--VVSVRKGRKVNSERRFFP 62 WY+ V NCE + +SI +H+ + IP + + R ++ E+ F Sbjct: 50 WYVAVVRVNCETRIADSIR---INLNHNHVWFDYWIPKVKVVYIDKRSNKRKVKEKLFLS 106 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS-V 121 ++ + + + + D + + VE + ++ V Sbjct: 107 TFIFCNVSPRQLDKIRFRSDVYKMLTMPGQRKIYQIPDQVVANYRYFVENDEEPVTAAPV 166 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEK 150 + G +V V G V++ + +K Sbjct: 167 PLKKGIKVRVVAGSMKGVEAYVQSYNGKK 195 >gi|134045190|ref|YP_001096676.1| transcription antitermination protein NusG [Methanococcus maripaludis C5] gi|132662815|gb|ABO34461.1| LSU ribosomal protein L24A [Methanococcus maripaludis C5] Length = 146 Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + EK ES+ + + L+ + S GY+ Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 LI+A + ++ + KV G + + V++ + ++ + + Sbjct: 44 LIEAANKGALDDLVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KIV Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142 >gi|237734244|ref|ZP_04564725.1| nusG antitermination factor [Mollicutes bacterium D7] gi|229382804|gb|EEO32895.1| nusG antitermination factor [Coprobacillus sp. D7] Length = 166 Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 14/172 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M WY++ E K + + IP R+ K N+ + Sbjct: 1 MKDNWYVLFALVAKENKLCSVLRR---------KGLDAFIPKIEYY--RRDIKGNTLKML 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 FPGY+ +++ M + + ++ E + N++ + Sbjct: 50 FPGYIFVRSEMKQSDFDNLLYELGEQRDGLIKQLKDDGVTALRDEEIEMFNKLLNSEGIL 109 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 S F + V GP + + +D+ +++ R L Sbjct: 110 EMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAILDIEFLNRHILAGLE 161 >gi|160891859|ref|ZP_02072862.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492] gi|317480339|ref|ZP_07939440.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|156858337|gb|EDO51768.1| hypothetical protein BACUNI_04316 [Bacteroides uniformis ATCC 8492] gi|316903514|gb|EFV25367.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 200 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT-EITIPSERVVSVRKGRKVNSERRFF 61 W+ + S E R+ L+ + E +P+ V+S K R+ S Sbjct: 28 KYWFAARTLSKQEFAVK----KRIENLNLEEGIDVECYLPTRTVISQLKYRRKRSVVPVA 83 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVS 119 G + I A +V + V + V Sbjct: 84 RGLIFIHATKQSACDIHNVYGVQVFYMKDFSTHSMLVVPDKQMQDFMFVMDLNPEGVCFD 143 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + VG++V V G F+ G + E ++ +V + I G Sbjct: 144 NEPLTVGKKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 182 >gi|169350274|ref|ZP_02867212.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552] gi|169293057|gb|EDS75190.1| hypothetical protein CLOSPI_01018 [Clostridium spiroforme DSM 1552] Length = 165 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 11/173 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYI V + K V S+ + E +P + + ++ + +P Sbjct: 1 MYWYIAHVKAGQASKLVGSLNKQ--------EDIEAFVPKKEQWYRARDKRTYVIKELYP 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 YV IK+ + + + + + ++ Sbjct: 53 DYVFIKSKLNKDKFDEKFKVFFRTIEGLIELLDYKDVYPLTLDEQSFLERLFDGGYVIKH 112 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 ++ + R GP + ++ V ++ IF V + Sbjct: 113 TLGNIINSRFNAIKGPLIGLEDRIIKLNRHDRFVTLDCKIFNGKFNVAIEMVD 165 >gi|323692775|ref|ZP_08107003.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum WAL-14673] gi|323503217|gb|EGB19051.1| hypothetical protein HMPREF9475_01866 [Clostridium symbiosum WAL-14673] Length = 187 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E++ + I L R + + + + G R FPGY Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQRPVSS 120 V I +++Y +K PK LGTG + E E + + P Sbjct: 58 VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMITGGSGEMADEPAIE 117 Query: 121 VFFEVGE-RVCVS------DGPFASFNGIV-------KNVDEEKSRVHVEVVIFGRV 163 + V ++ DG S G + ++ K V+ + G Sbjct: 118 RMERADDATVKLTVVETELDGGIRSMEGALSCFASDDVRLNLHKRYAVVKTRMLGEE 174 >gi|224538594|ref|ZP_03679133.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus DSM 14838] gi|224519778|gb|EEF88883.1| hypothetical protein BACCELL_03488 [Bacteroides cellulosilyticus DSM 14838] Length = 185 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 19/164 (11%) Query: 2 TPRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 WY ++ YS + L ++ +++ IP RK +++ Sbjct: 11 EYHWYALRITYSR-----ELVLKEFLDKNNIEN-----FIPMRYEYVTRKEQRIRKLVPA 60 Query: 61 FPGYVLIKAVMTDKVYHTIKD---TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116 V I + ++ P + P V + ++ H + + Q+ Sbjct: 61 IHNLVFIYSTRKKIDEIKEENAVLLPLRYIMDRETKQPIIVPEIQMRHFIAIAGSYDQQV 120 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 P + + G+RV ++ G F GI V ++ RV V + Sbjct: 121 IYLPPTEYSMQKGDRVRITGGVFEGVEGIFVRVKGDR-RVVVSI 163 >gi|60682927|ref|YP_213071.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253566058|ref|ZP_04843512.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766805|ref|ZP_06094634.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60494361|emb|CAH09157.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251945162|gb|EES85600.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253182|gb|EEZ24658.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 179 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 19/164 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V+V + E E + D E IP V+ R+V Sbjct: 9 WYAVRVTYSRELALKEYL---------DGECIENFIPMHYEYIVKNERRVRKLVPAVHNL 59 Query: 65 VLIKA--VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-----P 117 V I++ D++ + T + + V + V + + Sbjct: 60 VFIRSSRERIDRIKDEMGMTLPIRYIMDRESRQPIVVPTSQMRSFMAVAGSYDQQLVYLE 119 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 S+V F G+RV V+ G FA G V ++ V V I G Sbjct: 120 PSAVAFRKGQRVRVTGGIFAGVEGEFIRVKNDR---RVMVSIQG 160 >gi|323483811|ref|ZP_08089190.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum WAL-14163] gi|323402896|gb|EGA95215.1| hypothetical protein HMPREF9474_00939 [Clostridium symbiosum WAL-14163] Length = 187 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E++ + I L R + + + + G R FPGY Sbjct: 2 WYVIQTVTGKEEELMLFIRNILCRERYES----CFVIYAQWMKRLGGEWQIQVRPLFPGY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE----AAVQRPVSS 120 V I +++Y +K PK LGTG + E E + + P Sbjct: 58 VFIDTEEPERLYMDLKAVPKFSRLLGTGTDEFVPVKKEEEKFLRMITGGSGEMADEPAIE 117 Query: 121 VFFEVGE-RVCVS------DGPFASFNGIV-------KNVDEEKSRVHVEVVIFGRV 163 + V ++ DG S G + ++ K V+ + G Sbjct: 118 RMERADDATVKLTVVETKLDGGIRSMEGALSCFASDDVRLNLHKRYAVVKTRMLGEE 174 >gi|159905622|ref|YP_001549284.1| transcription antitermination protein NusG [Methanococcus maripaludis C6] gi|159887115|gb|ABX02052.1| NusG antitermination factor [Methanococcus maripaludis C6] Length = 146 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + EK ES+ + + L+ + S GY+ Sbjct: 3 FAVRTTTGQEKNVAESLASKAEKENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 LI+A + ++ + KV G + + V++ + ++ + + Sbjct: 44 LIEAANKGALDELVRKSFKVKGIVPG---ETSVSELDHLLTPTKIIEHIDK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KIV Sbjct: 92 GDIVELVGGPFKGERARVTRVDKHKEEITLELIDAAVPIPITVGVEQV-KIV 142 >gi|301310514|ref|ZP_07216453.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300832088|gb|EFK62719.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 196 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 54/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ +K K ++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAGGGRDKISPSKGLDVELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV I A + G ++D E+E + + Sbjct: 83 TKRPLLYNYVFIHASENEIFSLKRTLPLYNFLPRVSSGGQSYFPYLSDREMETLRWVAAS 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPFA V V V V I Sbjct: 143 YSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV-VQPGGGHKDVMVRIL 193 >gi|224539260|ref|ZP_03679799.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus DSM 14838] gi|224519109|gb|EEF88214.1| hypothetical protein BACCELL_04162 [Bacteroides cellulosilyticus DSM 14838] Length = 190 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ V+V + E + E IP + ++ G++V Sbjct: 18 HWFAVRVSYSRELTLKSILDKE---------NIESFIPMCYGMVMKGGKRVRRLVPAIHN 68 Query: 64 YVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 V + + D + ++ T + + V V + P+ + Sbjct: 69 LVFVHSTRKRIDALKDELEGTMPIRFIMNREHCRPVVIPDVQMRSFILVAGSHDEPILYM 128 Query: 122 FFEV-----GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 G++V ++DG F G + ++ RV V + Sbjct: 129 EAAELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169 >gi|297184778|gb|ADI20888.1| hypothetical protein [uncultured gamma proteobacterium EB080_L93H08] Length = 48 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV 35 M +WY++QVYSN EKK +++ R+ GL + Sbjct: 1 MEHQWYVLQVYSNYEKKVQKTLEERIKIKGLSSSI 35 >gi|452791|emb|CAA51490.1| nusG protein [Synechocystis sp. PCC 6803] Length = 29 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 20/27 (74%) Query: 149 EKSRVHVEVVIFGRVTPVELAYNQVEK 175 E+S++ + IFGR TPVEL + QVEK Sbjct: 1 ERSKLKALLSIFGRETPVELEFTQVEK 27 >gi|218281061|ref|ZP_03487628.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989] gi|218217683|gb|EEC91221.1| hypothetical protein EUBIFOR_00187 [Eubacterium biforme DSM 3989] Length = 166 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 13/162 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY++ + E++ + + ++ P + F G Sbjct: 5 HWYVLLTIRSKEEEVCKYLN--------ENDGIYAFSPKMEFYHRVSKQIQQRSL--FGG 54 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSP---VTDSEIEHIMNQVEAAVQRPVSS 120 YV + + ++ I + E I+N + + S Sbjct: 55 YVFVVSKLSQVEVDAIFKKFPLQSVFIHELKYEEEVSALTDEEIRILNMLLDDEKVLRMS 114 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 V ++ V+ GP + + + D+ + + + Sbjct: 115 YGELVNNKIHVTQGPLKNMDDYIVKYDKHNRLATLNLSFLNQ 156 >gi|161527894|ref|YP_001581720.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1] gi|160339195|gb|ABX12282.1| NusG antitermination factor [Nitrosopumilus maritimus SCM1] Length = 152 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 31/169 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ EK + + + + + ++ GYV Sbjct: 10 FAIRTTGGQEKVVMRLLEAKANANQINIQ-------------------SVFWVNDLKGYV 50 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +I+A+ Y ++ + G L +E + + + V Sbjct: 51 VIEAINPSDAYMAVEGVRHIRGQLRGELEFKD------------IEGYLVKKSTVSTLAV 98 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 V ++ GPF + +D +K V ++ PV + N ++ Sbjct: 99 DNVVEITGGPFKGMKATITRIDSDKEEATVVLLDASYQLPVTVDANYLK 147 >gi|167762938|ref|ZP_02435065.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC 43183] gi|167699278|gb|EDS15857.1| hypothetical protein BACSTE_01302 [Bacteroides stercoris ATCC 43183] Length = 183 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 16/145 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY V+ ++ E K + + R +P V ++G+ Sbjct: 16 WYAVRTFNCQELKISDFLKERKK---------VHFVPMTYVEKEKEGKTRKMLVPVVHNL 66 Query: 65 VLIKAVMTDKVYHTI---KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP---- 117 V ++ + K + + P + ++P + D ++ + + Sbjct: 67 VFLQKNESRKATLAMLKECNVPFSVLCDKETKHPCEIPDKQMTEFRILCDPDFKDTLYIT 126 Query: 118 VSSVFFEVGERVCVSDGPFASFNGI 142 + G+ V + GPFA G Sbjct: 127 HEEAEAKPGKNVRIIHGPFAGITGK 151 >gi|302348744|ref|YP_003816382.1| Putative transcription antitermination protein nusG [Acidilobus saccharovorans 345-15] gi|302329156|gb|ADL19351.1| Putative transcription antitermination protein nusG [Acidilobus saccharovorans 345-15] Length = 172 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 33/173 (19%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 R+Y + V E++ V +G R LD + G Sbjct: 21 RFYAIYVTGGYEERVVAVLGERARTLQLD-------------------VRSIVYSPDLKG 61 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 V ++ +Y+ I+ + T ++ I+ V+ P ++ Sbjct: 62 VVFVEVGDVKDLYYLIRGVRNI--------KRRRPTMVSVDDILKLVKP----PAAAEPI 109 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G+ + V GPF G + V K V V ++ V + +QV+ + Sbjct: 110 AKGDVIQVIGGPFKGMRGRIIEV--RKGEVDVNLLEGDSKIIVTIPIDQVKPV 160 >gi|317478955|ref|ZP_07938101.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316904864|gb|EFV26672.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 178 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + IP + + ++KG+KV + Sbjct: 10 WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKGKKVRALVPVVHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A +D + T V DS+++ + Sbjct: 61 LFVHARPSDVQRVKSQVTYLQYITDTRSGQKIIVPDSQMQRFIAVSGTYDDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 121 LNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160 >gi|160888139|ref|ZP_02069142.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492] gi|160890547|ref|ZP_02071550.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492] gi|156860279|gb|EDO53710.1| hypothetical protein BACUNI_02989 [Bacteroides uniformis ATCC 8492] gi|156862274|gb|EDO55705.1| hypothetical protein BACUNI_00547 [Bacteroides uniformis ATCC 8492] Length = 178 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + IP + + ++KG+KV + Sbjct: 10 WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKGKKVRALVPVVHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A +D + T V D +++ + Sbjct: 61 LFVHARPSDVQRVKSQVTYLQYITDTRSGQKIIVPDGQMQRFIAVSGTYDDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 121 LNLSKGTKVRITGGEFEGQEGVFLKVKGARDR-RVVIEIQG 160 >gi|217073910|gb|ACJ85315.1| unknown [Medicago truncatula] Length = 329 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + G V + G F F G +K ++ + V +FG+ V+L Sbjct: 261 ITEEASSAKKKPKLVTGSTVQIISGSFLGFAGTLKKLNSKTKMATVHFTMFGKENIVDLD 320 Query: 170 YNQV 173 +++ Sbjct: 321 VSEI 324 >gi|53712096|ref|YP_098088.1| putative transcriptional regulator UpxY-like protein [Bacteroides fragilis YCH46] gi|60680287|ref|YP_210431.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253563867|ref|ZP_04841324.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265765431|ref|ZP_06093706.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52214961|dbj|BAD47554.1| putative transcriptional regulator UpxY homolog [Bacteroides fragilis YCH46] gi|60491721|emb|CAH06477.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251947643|gb|EES87925.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254815|gb|EEZ26249.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161815|emb|CBW21356.1| putative transcriptional regulator [Bacteroides fragilis 638R] Length = 178 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E A+ + +P + +S++KG+KV Sbjct: 10 WFAMRATYRRETDAMRLLAKE---------NLGCFVPMQYKISIKKGKKVRVLVPIIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + I A ++ + D+E++ + Sbjct: 61 IFIHACPSEVKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 121 LNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160 >gi|330834457|ref|YP_004409185.1| transcription antitermination protein NusG [Metallosphaera cuprina Ar-4] gi|329566596|gb|AEB94701.1| transcription antitermination protein NusG [Metallosphaera cuprina Ar-4] Length = 153 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 34/173 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++V E + R+ +G++ V I +P GY+ Sbjct: 10 YAIKVTGGQEMSVAIMLEERIKTNGINE-VFSIIVP-----------------PALKGYL 51 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ V I V G + V + + + Sbjct: 52 IVESSGPHVVKLIISGIRHVRGIAPG------------LVPKTDIMNMVSKKPTGPAIKT 99 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176 G+ V V GPF V + E+ V + I P V + +QV + Sbjct: 100 GDMVEVVSGPFRGMQAQVMGYNAERG--EVVLNILESAFPLQVTIPVDQVRTV 150 >gi|260769077|ref|ZP_05878011.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972] gi|260617107|gb|EEX42292.1| transcriptional activator RfaH [Vibrio furnissii CIP 102972] Length = 122 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 55 NSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 + FP Y+ ++ + T++ T V F+ G P + I + Q+ Sbjct: 1 MVKEPLFPSYMFVRFDFNQGPTFTTVRSTRGVTDFIRFGAEPKELQGDLIY-ELKQLSTH 59 Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + + G+ + V G F I + D E R + V + + P+ + Sbjct: 60 LDDVSDAKMPVRGQEIEVKSGQFCGLKAIYQQPDGET-RSIMLVKMLSQSVPMSIE 114 >gi|317479971|ref|ZP_07939086.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316903916|gb|EFV25755.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 176 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M W+ ++ E +A+ + + G IP + +S+R+GRKV + Sbjct: 1 MDKETEVWFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRAL 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116 V + A ++ + T + D +++ + Sbjct: 52 VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIIIPDHDMQRFIAVAGTYNDHL 111 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158 >gi|330998517|ref|ZP_08322339.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] gi|329568281|gb|EGG50093.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] Length = 502 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 21/167 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW++++ + E+K + + L ++ + E P+ + + + ++ F G Sbjct: 15 RWFVIRTLPHQERKLTDLLSAHLPQA---PNILEAYCPTHTTADI-GSKGRDVQQPLFAG 70 Query: 64 YVLI----KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 YV + +AV + T +T E + + Sbjct: 71 YVFVLSTQEAVADFIGKYYPDGTLLYERKKDDRHKAGFLTIPEEQIRFFKDFNENYAEHV 130 Query: 120 SV-------------FFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 V E E V V DGP G + E+ V Sbjct: 131 IVLEKPYSDYAFNPKTNEPNEIVKVLDGPLKGREGYLTRFHRERRLV 177 >gi|255007624|ref|ZP_05279750.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313145317|ref|ZP_07807510.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134084|gb|EFR51444.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 178 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E A+ + +P + +S++KG+KV Sbjct: 10 WFAMRATYRRETDAMRLLAKE---------NLGCFVPMQYKISIKKGKKVRVLVPVIHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + I A ++ + D+E++ + Sbjct: 61 IFIHACPSEVKRVKSMVAYLQYITDTRSGKKIIIPDNEMQRFIAVAGTYSDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 121 LNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 160 >gi|227830760|ref|YP_002832540.1| transcription antitermination protein NusG [Sulfolobus islandicus L.S.2.15] gi|229579655|ref|YP_002838054.1| transcription antitermination protein NusG [Sulfolobus islandicus Y.G.57.14] gi|229581679|ref|YP_002840078.1| transcription antitermination protein NusG [Sulfolobus islandicus Y.N.15.51] gi|284998274|ref|YP_003420042.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5] gi|227457208|gb|ACP35895.1| ribosomal protein L24 [Sulfolobus islandicus L.S.2.15] gi|228010370|gb|ACP46132.1| NusG antitermination factor [Sulfolobus islandicus Y.G.57.14] gi|228012395|gb|ACP48156.1| NusG antitermination factor [Sulfolobus islandicus Y.N.15.51] gi|284446170|gb|ADB87672.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5] Length = 152 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%) Query: 1 MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 M +Y V+V E + R+ + + + I +P Sbjct: 1 MEKPNMRNYYAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 GYV+++A V I G ++V V + Sbjct: 45 --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEVLKIVSK 90 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174 + G+ V V GPF V V+E K V + I P V + +Q++ Sbjct: 91 KTIGPTVKPGDVVEVISGPFRGTQAQVVRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148 >gi|227828023|ref|YP_002829803.1| transcription antitermination protein NusG [Sulfolobus islandicus M.14.25] gi|229585292|ref|YP_002843794.1| transcription antitermination protein NusG [Sulfolobus islandicus M.16.27] gi|238620252|ref|YP_002915078.1| transcription antitermination protein NusG [Sulfolobus islandicus M.16.4] gi|227459819|gb|ACP38505.1| NusG antitermination factor [Sulfolobus islandicus M.14.25] gi|228020342|gb|ACP55749.1| NusG antitermination factor [Sulfolobus islandicus M.16.27] gi|238381322|gb|ACR42410.1| NusG antitermination factor [Sulfolobus islandicus M.16.4] gi|323475114|gb|ADX85720.1| NusG antitermination factor [Sulfolobus islandicus REY15A] gi|323477845|gb|ADX83083.1| NusG antitermination factor [Sulfolobus islandicus HVE10/4] Length = 152 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%) Query: 1 MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 M +Y V+V E + R+ + + + I +P Sbjct: 1 MEKPNMRNYYAVKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 GYV+++A V I G +++ V + Sbjct: 45 --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSK 90 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174 + G+ V V GPF V V+E K V + I P V + +Q++ Sbjct: 91 KTIGPTVKPGDVVEVISGPFRGTQAQVVRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148 >gi|160889471|ref|ZP_02070474.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492] gi|156860988|gb|EDO54419.1| hypothetical protein BACUNI_01895 [Bacteroides uniformis ATCC 8492] Length = 176 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 17/168 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M W+ ++ E +A+ + + G IP + +S+R+GRKV + Sbjct: 1 MDKETEVWFAMRATYRRELEAMHLLEK--ANLG-------CFIPMQYKISIRRGRKVRAL 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116 V + A ++ + T + D +++ + Sbjct: 52 VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIVIPDHDMQRFIAVAGTYNDHL 111 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158 >gi|313148912|ref|ZP_07811105.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137679|gb|EFR55039.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 179 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 19/165 (11%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V+V + E + E IP V+ R+V Sbjct: 8 HWYAVRVTYSRELSLKTYLDSES---------IENFIPMRYEYIVKNERRVRKLVPAVHN 58 Query: 64 YVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 V +++ + P P V DS++ M + Q+ Sbjct: 59 LVFVRSCRERIDRIKEEMGVSLPIRYIMDRESRQPIVVPDSQMRSFMAVAGSYEQQLVYL 118 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 S+V F G+RV V+ G FA G V ++ V V I G Sbjct: 119 EPSAVAFRKGQRVRVTGGLFAGVEGEFIRVKNDR---RVMVSIQG 160 >gi|254442726|ref|ZP_05056202.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium DG1235] gi|198257034|gb|EDY81342.1| hypothetical protein VDG1235_960 [Verrucomicrobiae bacterium DG1235] Length = 83 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 P F+ GE V V +GPF G V E SRV + + + T V ++ + + Sbjct: 22 PAVDDSFQCGENVEVLEGPFQGMMGTVLQNLNEGSRVAILLTLLTSETKVTISRSHL 78 >gi|256842699|ref|ZP_05548189.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256735699|gb|EEU49043.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 210 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ ++ K +++ R R G + E PS G+ VN Sbjct: 31 RWYVL-TLPTAGGGRDRISPSKGLDAELSRRERRG--EALFEYFSPSYVEARKVGGKMVN 87 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 ++R YV + A + G ++D E++ + + Sbjct: 88 TKRPLLYNYVFVHASEDEIFRLKRTLPLYNFLPRVSSGGRSYFPYLSDREMDTLRWVAAS 147 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ GPF V V V V I Sbjct: 148 YSNELPVYVPDSGRLLKGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 198 >gi|167754737|ref|ZP_02426864.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402] gi|167705569|gb|EDS20148.1| hypothetical protein CLORAM_00241 [Clostridium ramosum DSM 1402] Length = 170 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 11/172 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T WY+ + + KK V ++ +++ + IP R + + Sbjct: 7 TMYWYVARFKTGRTKKLVSTLNKQVNMN--------AFIPKSERCFGRGETAEFIVKEIY 58 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIG---FLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 P YV IK+ + + + + SE + ++ ++ Sbjct: 59 PDYVFIKSDLDQEAFDEQFKEYFKTINGLVDLLEYKDTYPLTSEEQSLLVKLLDNTDTIK 118 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 + V R +DGP ++K VD+ + ++ I V + Y Sbjct: 119 HTKGVIVDRRFVPTDGPLVGLEDMIKKVDKYRRFATLDTEILTGKLLVAIDY 170 >gi|237734243|ref|ZP_04564724.1| nusG antitermination factor [Mollicutes bacterium D7] gi|229382803|gb|EEO32894.1| nusG antitermination factor [Coprobacillus sp. D7] Length = 169 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ + K + + + + +P + + G+KV +E FP Sbjct: 2 MNWYLIFA---NDNKINDLLLYFNNHPEM-----TAFVPKIEKLMKKDGKKVFAEVPMFP 53 Query: 63 GYVLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 Y+ I++ + ++ I KD + + + E + + ++ + Sbjct: 54 NYIFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLI 113 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR--VTPVEL 168 + S+ V ++ V DGP ++K +D K + +FG+ P+E+ Sbjct: 114 IRSIGVIVDSKLIVQDGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLEV 165 >gi|282164804|ref|YP_003357189.1| putative ribosomal protein L26e [Methanocella paludicola SANAE] gi|282157118|dbj|BAI62206.1| putative ribosomal protein L26e [Methanocella paludicola SANAE] Length = 162 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 31/169 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ +N E+ I + G D + I +P E GYV Sbjct: 17 FAVKTTANQERSVANLIAMVARKEGYD--IRSILVPEE-----------------LKGYV 57 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ M + V HTI++ P + + + V Sbjct: 58 LVESPMHEIVEHTIQNIPHAKAVVKGASSIAEVQHFLAPK------------PVVTGISE 105 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF VK VDE K + VE+ PV + + V Sbjct: 106 GDIVELISGPFKGERARVKRVDETKEEITVELSEAMVPIPVTVRGDIVR 154 >gi|55377551|ref|YP_135401.1| transcription antitermination protein NusG [Haloarcula marismortui ATCC 43049] gi|55230276|gb|AAV45695.1| transcription antitermination protein NusG [Haloarcula marismortui ATCC 43049] Length = 145 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + I R + + P YV Sbjct: 4 YAVKTTASQERTVADMIISRE-----EDEIHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + + + P G + M +VE + Sbjct: 42 MVEADDHNVFDRILDEIPHANGVVQGES------------SMAEVEHFLSPKPDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|220923966|ref|YP_002499268.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219948573|gb|ACL58965.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 173 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 4/144 (2%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVN-SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89 L +PS V + R FPGY + ++ + I P V + Sbjct: 30 LQQAGFVTLVPSRTAVVRQASSGKRLVRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALV 88 Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 TGE P+ + + ++ + VG++V + D + G V E Sbjct: 89 TTGEAPTELPPW-MMKMLIAADEMAAYDRPRPQLAVGDKVRIRDELWQGLIGEVMRA-PE 146 Query: 150 KSRVHVEVVIFGRVTPVELAYNQV 173 R+ V + FG+ + + +++ Sbjct: 147 GRRIAVLLKAFGKKHVLSVDVDRL 170 >gi|281357169|ref|ZP_06243658.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC BAA-548] gi|281316200|gb|EFB00225.1| hypothetical protein Vvad_PD2261 [Victivallis vadensis ATCC BAA-548] Length = 154 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 26 LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKV 85 + L + +P + KV +E FPGY+ + + I++ K+ Sbjct: 1 MVAQKLRNAGIACYLPVVPRAYMMHSTKVITEVPMFPGYLFLCLGRFEAADLKIRE-KKI 59 Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV--GERVCVSDGPFASFNGIV 143 + + + H + + EA + + + G++V ++ G A V Sbjct: 60 VKIDLQFDEGREALLIDELHTLQRCEALAKTEPILINPGIRHGDKVLITSGSLAGLVTEV 119 Query: 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 D+ + V V + G+ L +++K+ Sbjct: 120 VRRDDAHDAIIVNVTLLGQHIEYRLPAEKLKKL 152 >gi|254882595|ref|ZP_05255305.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642064|ref|ZP_07996730.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] gi|254835388|gb|EET15697.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386330|gb|EFV67243.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] Length = 182 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 13/156 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W+ ++V E + D IP V+ + K RKV Sbjct: 8 QWFAMRVTYRRELDVKNLL---------DQQGVSSFIPMHYVIRMAKKRKVRELVPVVHN 58 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVS 119 + I TD V D ++ + + Sbjct: 59 LIFIHITQTDMKELKKDIPYLQYMTDSRSGEKIIVPDGQMRDFIAVAGTYDEHLLFFKPE 118 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + G RV + G FA + GI V + R V Sbjct: 119 EINPAKGTRVRIIGGDFAGYEGIFIKVKGARDRRVV 154 >gi|309777816|ref|ZP_07672762.1| transcription termination/antitermination factor NusG [Erysipelotrichaceae bacterium 3_1_53] gi|308914377|gb|EFP60171.1| transcription termination/antitermination factor NusG [Erysipelotrichaceae bacterium 3_1_53] Length = 88 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +WY+VQV S EKK E +S+ +++E IP G+ + F Sbjct: 26 MKWYVVQVRSGHEKKIAEKCRTMISK----DILSECFIPEYIHKKKYMGKWHDVRDILFK 81 Query: 63 GYVLIKA 69 GY+ + Sbjct: 82 GYIFMIT 88 >gi|291515004|emb|CBK64214.1| hypothetical protein AL1_18470 [Alistipes shahii WAL 8301] Length = 370 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHL-VTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ VY + E + L+R D+ + E P GR V + R Sbjct: 33 RWYVM-VYPTSSRAMTEELDRELTRRRRDNEPLFEYFAPVLVEARKMNGRLVTTRRSLLY 91 Query: 63 GYVLIKAVMTDKVYHTIK-----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 Y+ + A + + D+ + + + + Sbjct: 92 NYLFVHASECEIYRIKQRLPQYNLLPRVKDSKESYHYPYLTDKAMRDLQWIARSYAEPIP 151 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 P + G+R+ +++G FA V + + + V I Sbjct: 152 ICTADPA---WLVKGDRIRITEGRFAGIEAKVVTNTPTRHK-EILVSI 195 >gi|15897281|ref|NP_341886.1| transcription antitermination protein NusG [Sulfolobus solfataricus P2] gi|13813488|gb|AAK40676.1| Transcription termination antitermination factor (nusG) [Sulfolobus solfataricus P2] Length = 157 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 34/171 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++V E + R+ + + + I +P GYV Sbjct: 15 YAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP-----------------PNLKGYV 56 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V I G +++ V R + Sbjct: 57 VLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSRKTVGPTVKP 104 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174 G+ V V GPF V V+E K V + I P V + +Q++ Sbjct: 105 GDVVEVISGPFRGTQAQVIRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 153 >gi|301309360|ref|ZP_07215302.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] gi|300832449|gb|EFK63077.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] Length = 178 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 21/169 (12%) Query: 1 MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M W++++ N R + L+ E+ P + RKG+++ Sbjct: 1 MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 E + T + T + G P V +E+ + V + Sbjct: 52 REEVPLLHDLLFAHTTRTCMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111 Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 V G + + GP + G + ++ + R+ VE+ Sbjct: 112 DSPRYFLVEELTSAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160 >gi|167044190|gb|ABZ08872.1| putative KOW motif protein [uncultured marine crenarchaeote HF4000_APKG5E24] gi|167044468|gb|ABZ09143.1| putative KOW motif protein [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 222 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 31/171 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + + R+ ++ GYV Sbjct: 81 FAVRTTGGQEKIVMRLLEARIKMEKINIQ-------------------SVLLLSDLKGYV 121 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A ++ I+ + G L + I + + V Sbjct: 122 VVEARDVSAMFDAIQGIRHIRGQLRGELTYKEIDKYLI------------KKSTVSELAV 169 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + GPF + ++ EK V ++ PV + N ++ + Sbjct: 170 ENTVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDANYLKLV 220 >gi|284174530|ref|ZP_06388499.1| transcription antitermination protein NusG [Sulfolobus solfataricus 98/2] gi|3914185|sp|P96036|NUSG_SULSO RecName: Full=Putative transcription antitermination protein nusG gi|1814426|gb|AAB99523.1| transcription termination-antitermination factor [Sulfolobus solfataricus] gi|261601951|gb|ACX91554.1| NusG antitermination factor [Sulfolobus solfataricus 98/2] Length = 152 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 38/180 (21%) Query: 1 MTP----RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 M +Y ++V E + R+ + + + I +P Sbjct: 1 MEKPNMRNYYAIKVVGGQEINVALMLEERIKTNNIKG-IYAIIVP--------------- 44 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 GYV+++A V I G +++ V R Sbjct: 45 --PNLKGYVVLEAEGLHIVKPLIAGIRNARGLAQG------------LLPRDEILKIVSR 90 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVE 174 + G+ V V GPF V V+E K V + I P V + +Q++ Sbjct: 91 KTVGPTVKPGDVVEVISGPFRGTQAQVIRVEEAKG--EVVLNILESAFPLQVTVPLDQIK 148 >gi|13476620|ref|NP_108190.1| hypothetical protein mlr7998 [Mesorhizobium loti MAFF303099] gi|14027382|dbj|BAB53651.1| mlr7998 [Mesorhizobium loti MAFF303099] Length = 201 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 26/176 (14%) Query: 24 GRLSRSGLDHLVTEITIPSERV--VSVRKGRKVNSERRFFPGYVLIKA-VMTDKVYHTIK 80 ++ + E P R + R ++ F GY+ + + Sbjct: 20 EIVAERSIRDAGFECYYPRMRKEIIHHRTNVRIVRRFPLFTGYIFVALPSANGEYLKDCD 79 Query: 81 DTPKVIGFLGTGENPSP-----------------VTDSEIEHIMNQVEAAVQRPVSSVFF 123 +++ + G P D++ I ++E +R ++ F Sbjct: 80 GLGRLLSYDGEFGKPWQVPTGAVESYMRAEADLEFDDTKESRIKRKLEGKTRRETIAMTF 139 Query: 124 EVGERVCVSDG-----PFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ + V A F+G V +V + V + +FGR+ E + +E Sbjct: 140 PEGQAIRVKQDWQHKHMLAGFHGEVVSVTG-RGTVKSMIELFGRLVAAEFDADDIE 194 >gi|29345872|ref|NP_809375.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337765|gb|AAO75569.1| putative transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 184 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY VQ + E E +G L + G+++ + I G+K Sbjct: 14 KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 65 Query: 63 GYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115 + I+ T+K P ++ + + D E+ + + Sbjct: 66 NLLFIEKEFTEKELLERVKDCTIPFLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYKGTLY 125 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGI 142 + G+ V V GPFA G Sbjct: 126 VDTVTAEARPGQAVRVIRGPFAGLEGK 152 >gi|167043318|gb|ABZ08023.1| putative KOW motif protein [uncultured marine crenarchaeote HF4000_ANIW141M18] Length = 228 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 31/171 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + + R+ ++ GYV Sbjct: 87 FAVRTTGGQEKIVMRLLEARIKMEKINIQ-------------------SVLLLSDLKGYV 127 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A ++ I+ + G L + I + + V Sbjct: 128 VVEARDVSAMFDAIQGIRHIRGQLRGELTYKEIDKYLI------------KKSTVSELAV 175 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V + GPF + ++ EK V ++ PV + N ++ + Sbjct: 176 ENTVEIIGGPFKGMKATITRLELEKEEATVILLDATYELPVTVDANYLKLV 226 >gi|46446232|ref|YP_007597.1| putative transcription antitermination factor NusG [Candidatus Protochlamydia amoebophila UWE25] gi|46399873|emb|CAF23322.1| putative transcription antitermination factor NusG [Candidatus Protochlamydia amoebophila UWE25] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 +WY+VQV S EKK +++ L G+ + +I +P+E V V+K + + Sbjct: 3 KWYVVQVLSTHEKKVKKALEEHLELKGMSGEIEQILLPTENVSEVKKVSNMLLKNVC 59 >gi|304314031|ref|YP_003849178.1| transcription antitermination protein NusG [Methanothermobacter marburgensis str. Marburg] gi|302587490|gb|ADL57865.1| predicted transcription antitermination protein NusG [Methanothermobacter marburgensis str. Marburg] Length = 159 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 25/171 (14%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ EK + ++ SG++ + I +P GY+ Sbjct: 9 YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPES-----------------LRGYI 49 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ + + P + G + + E V+ ++ + Sbjct: 50 LVESSSKIDMRNPAIRVPHLRGVVEGKTEGESKIEFEE------VKRFLKPEPIISSIKK 103 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V + GPF V +DE + V +E++ PV + +Q+ I Sbjct: 104 GSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 154 >gi|325959969|ref|YP_004291435.1| NusG antitermination factor [Methanobacterium sp. AL-21] gi|325331401|gb|ADZ10463.1| NusG antitermination factor [Methanobacterium sp. AL-21] Length = 147 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 31/171 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ EK IG + SG++ V I +P GY+ Sbjct: 3 YAIRTLVGQEKNVARIIGRNVKNSGIE--VHSILVPES-----------------LRGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++ I E V++ + + Sbjct: 44 LVE------SSTKIDMQNPAFKVPHMKGAIEGEIPYEE------VKSFLNPEPILASVQK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V + GPF V +DE K V +E++ PV + +Q+ I Sbjct: 92 GSIVELISGPFKGEKAKVVRIDESKEDVVLELIEAAVPIPVTVKGDQIRLI 142 >gi|2499342|sp|Q46494|NUSG_ACIAM RecName: Full=Putative transcription antitermination protein nusG gi|1217623|emb|CAA65235.1| nusG protein [Acidianus ambivalens] Length = 152 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 34/173 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+V E + R + + + I +P GYV Sbjct: 9 YAVKVTGGQEVSVGLMLEERAKTNNIPE-IYSIIVP-----------------PGLKGYV 50 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A V I V G + + V + V+ + Sbjct: 51 IVEASGPHVVKLLIAGIRHVRGIAQG------------LVPKDHIVKMVSKKVTGPTIKE 98 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP--VELAYNQVEKI 176 G+ V V GPF V V E K V + I P V + +QV+ + Sbjct: 99 GDLVEVVSGPFRGMQAQVVKVTEGKG--EVVLNILESAFPLQVTIPVDQVKPV 149 >gi|270297042|ref|ZP_06203241.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273029|gb|EFA18892.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 178 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 14/161 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + IP + + ++K +KV + Sbjct: 10 WYAMRATYRREPDAMHLLKKE---------NLGCFIPMQYKICIKKRKKVRALVPVVHNL 60 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A ++ + T V D +++ + Sbjct: 61 LFVHARPSNVQRVKSQVTYLQYITDTRSGQKIIVPDGQMQRFIAVSGTYDDHLLYFQPDE 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F GI V + R V + I G Sbjct: 121 LNLSKGTKVRITGGEFEGQEGIFLKVKGARDR-RVVIEIQG 160 >gi|262384780|ref|ZP_06077912.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293496|gb|EEY81432.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 370 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Query: 4 RWYIV---QVYSNCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNSE 57 RWY++ K +S+ SR + E PS V G+ VN++ Sbjct: 27 RWYVLTLPSTGVARRDKISPAKSLDAEFSRRKRRGETLFEYFAPSYVEVRKVDGKMVNTK 86 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVEA 112 R YV ++A + + +K T + F G + ++D E+ ++ E+ Sbjct: 87 RPLLFNYVFVRASVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAES 144 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 145 YSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|253567873|ref|ZP_04845284.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384765|ref|ZP_06994325.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|251841946|gb|EES70026.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263044|gb|EFI05908.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 181 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY VQ + E E +G L + G+++ + I G+K Sbjct: 11 KAWYAVQTFYCKE----EHLGKYLEKKGVNYFIPMRYI----EHETLDGKKHRKLTPAVH 62 Query: 63 GYVLIKAVMTDKV---YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ---- 115 + I+ T+K P ++ + + D E+ + + Sbjct: 63 NLLFIEKEFTEKELLERVKDCTIPFLLVRDRSTRRCYEIPDCEMLEFRAVCDPNYKGTLY 122 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGI 142 + G+ V V GPFA G Sbjct: 123 VDTVTAEARPGQAVRVIRGPFAGLEGK 149 >gi|262382524|ref|ZP_06075661.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295402|gb|EEY83333.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 365 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ + K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAVGGYDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + + YV I A + +G ++D E+E + E+ Sbjct: 83 TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ G F V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193 >gi|150007996|ref|YP_001302739.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149936420|gb|ABR43117.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 369 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ K +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV I++ + + +K T + F G + ++DSE+ ++ E Sbjct: 86 KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDSEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEVV 180 >gi|15679672|ref|NP_276789.1| transcription antitermination protein NusG [Methanothermobacter thermautotrophicus str. Delta H] gi|2622808|gb|AAB86150.1| transcription termination factor NusG [Methanothermobacter thermautotrophicus str. Delta H] Length = 169 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 25/171 (14%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ EK + ++ SG++ + I +P GY+ Sbjct: 19 YALKTSVGQEKNVARMLARKVRDSGIE--INAILVPES-----------------LRGYI 59 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ + + P + G + + D E V+ ++ + Sbjct: 60 LVESSSKIDMRNPAIRVPHLRGVVESKTEGEAEIDFEE------VKRFLKPEPIISSIKK 113 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V + GPF V +DE + V +E++ PV + +Q+ I Sbjct: 114 GSIVELISGPFKGERAKVIRIDESREEVVLELIEAAVPIPVTVKGDQIRII 164 >gi|329766365|ref|ZP_08257911.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137134|gb|EGG41424.1| NusG antitermination factor [Candidatus Nitrosoarchaeum limnia SFB1] Length = 152 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 31/169 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ EK + + + + + L+ GYV Sbjct: 10 FAIRTTGGQEKIVMRLLEAKANTNKLNIQ-------------------SVLLVDNLKGYV 50 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +I+A+ Y ++ + G L +E + + + V Sbjct: 51 VIEAINPSDAYMAVEGVRHIRGQLRGELEFKD------------IEGYLVKKSTVSQLGV 98 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + + ++ GPF + +D +K V ++ PV + N ++ Sbjct: 99 DDVIEITGGPFKGMKATITRIDVDKEEATVVLLDASYQLPVTVDANYLK 147 >gi|307943758|ref|ZP_07659102.1| putative transcription termination factor NusG [Roseibium sp. TrichSKD4] gi|307773388|gb|EFO32605.1| putative transcription termination factor NusG [Roseibium sp. TrichSKD4] Length = 200 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W + + E+ A+ + R GL + R R + +++ + GY Sbjct: 31 WLVACCHPTKEQHALRQLTER----GLLAYLPMR---PGRRRQPRCKKMIDNSQPLIRGY 83 Query: 65 VLIKAVM------TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 + + + + +I Q+ +P Sbjct: 84 LFVCTDFSTGSVVDEILSCGCVSGLLSFRADKYPHRVPSARVVDIIDHCEQL-QTGGKPQ 142 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 ++ F++G +V + GP F+ +V D K+RV EV Sbjct: 143 KAIGFDIGSKVRLIAGPMEGFSAVVTGYDLAKARVQAEVK 182 >gi|270296612|ref|ZP_06202811.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272599|gb|EFA18462.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 176 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 17/168 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M W+ ++ E +A+ + IP + +S+ +GRKV + Sbjct: 1 MDKETEVWFAMRATYRRELEAMHLLEKA---------NIGCFIPMQYKISICRGRKVRAL 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116 V + A ++ + T + D +++ + Sbjct: 52 VPVIRNLVFVHARPSEVQRFKSQITYLQYITDTRSGQKIIIPDHDMQRFIAVAGTYNDHL 111 Query: 117 ---PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F G+ V + R V + I G Sbjct: 112 LYFQPEELNLSKGTKVRITGGDFEGQEGVFLKVKGARDR-RVVIAIQG 158 >gi|84498526|ref|ZP_00997296.1| putative secreted protein [Janibacter sp. HTCC2649] gi|84381269|gb|EAP97153.1| putative secreted protein [Janibacter sp. HTCC2649] Length = 438 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 F G+ V ++ G + + V VD K+ V VEVV+ G PV L Y+ V Sbjct: 383 PFSPGDTVKITAGQYLGLSAKVLKVDTVKNTVTVEVVVLGIKLPVVLPYSSV 434 >gi|329955184|ref|ZP_08296141.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328526183|gb|EGF53202.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 17/162 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V+V + E + + E IP +R R+V Sbjct: 27 HWYAVRVTYSRELSLKDYLDKE---------NIENFIPMHYEYIIRNERRVRKLVPAIHN 77 Query: 64 YVLIK---AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V ++ A + + + + P P + D+++ + + V Sbjct: 78 LVFVRSTRACIDEIKNNPALNIPVRYIMNRETRQPVIIPDAQMRSFILVAGTYDEAVVYV 137 Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 E G +V ++ G F G + ++ RV V + Sbjct: 138 EPEELKLVKGTKVRITGGVFEGAVGEFVRLRHDR-RVVVNIE 178 >gi|76801059|ref|YP_326067.1| transcription antitermination protein NusG [Natronomonas pharaonis DSM 2160] gi|76556924|emb|CAI48498.1| transcription antitermination protein homolog [Natronomonas pharaonis DSM 2160] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 33/169 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + + R + P YV Sbjct: 4 YSVKTTASQERTVADMLISREEEG-----IHATLAPDA-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A T + ++D P + SE ++VE + Sbjct: 42 MVEADDTAAISRALEDIPHARTLV-----------SEQPSPFSEVEHFLSPKPDVEGIAE 90 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 91 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 139 >gi|317131504|ref|YP_004090818.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3] gi|315469483|gb|ADU26087.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3] Length = 164 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 19/165 (11%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ Y++QV S EK ++ P E G Sbjct: 1 MSM--YVLQVLSGAEKDVRAALL---------DQGIPAYAPEENRQIRSGGIWQTRPYLL 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 F GYV + +Y+ I+ P V + + + E I + S Sbjct: 50 FGGYVFVVVGNVCAMYYRIRRVPGVLRWLELHAGDATALLPDEEALIRRIGSQTFE---S 106 Query: 120 SVFFEVGERVCVSDGPFASF--NGIVKNVDEEKSRVHVE--VVIF 160 V G+ DGP + G+ + + R V + + Sbjct: 107 HVRQLAGDTFEPVDGPLKEYADAGVRILYNRRQRRAFVFEPLSMM 151 >gi|150399496|ref|YP_001323263.1| transcription antitermination protein NusG [Methanococcus vannielii SB] gi|150012199|gb|ABR54651.1| NusG antitermination factor [Methanococcus vannielii SB] Length = 146 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + EK E++ + + L+ + S GY+ Sbjct: 3 FAVRTTNGQEKNVAEALATKAEKENLE-------VFSILATE------------DLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + ++ + KV G + + + + Sbjct: 44 LVEAANKGALDELVRKSFKVKGIVPGETTVNELDHLLTPT------------KIIENIDK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K + +E++ P+ + QV KIV Sbjct: 92 GDVVELVGGPFKGERARVTRVDKNKEEITLELIDAAVPIPITVGVEQV-KIV 142 >gi|71737973|ref|YP_273246.1| transcriptional activator RfaH [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558526|gb|AAZ37737.1| transcriptional activator RfaH [Pseudomonas syringae pv. phaseolicola 1448A] Length = 192 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 21/164 (12%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+VQ S + +A E++ P+ S + FP Sbjct: 42 KEWYLVQCKSGQDSRAEENL---------TAQGYANFRPTINASSESRSVNTKHNSPLFP 92 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GY+ I +D + ++ T ++ + G V + I+ I + E+ S Sbjct: 93 GYLFIHLSASD-NWAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAESLNYSHSSHSE 151 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEK---SRVHVEVVIFGRV 163 + P + + ++ K R + V R Sbjct: 152 KD--------SAPLDNRGSEISDILSAKSHEERTLLLVGFLQRE 187 >gi|257388977|ref|YP_003178750.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286] gi|257171284|gb|ACV49043.1| NusG antitermination factor [Halomicrobium mukohataei DSM 12286] Length = 145 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + I R + + P YV Sbjct: 4 YAVKTTASQERTVADMIISRE-----EESIHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + + P G + M++VE + Sbjct: 42 MVEADDASVFERILDEIPHANGVVPGES------------SMSEVEHFLSPKPDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|262383310|ref|ZP_06076446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294208|gb|EEY82140.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 178 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 21/169 (12%) Query: 1 MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M W++++ N R + L+ E+ P + RKG+++ Sbjct: 1 MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 E + + T + G P V +E+ + V + Sbjct: 52 REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111 Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 V G + + GP + G + ++ + R+ VE+ Sbjct: 112 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 160 >gi|291515005|emb|CBK64215.1| Transcription antiterminator [Alistipes shahii WAL 8301] Length = 374 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 17/168 (10%) Query: 4 RWYIVQVYS-----NCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSE 57 RWY++ + + ++ L R + V E PS V + G V + Sbjct: 29 RWYVL-ALPTSRQGHYQGNPARALRMELERRTRNGEPVFEYFAPSYVEVRKQHGELVRTN 87 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDS---EIEHIMNQVEAAV 114 YV I A + + P+ E E + V A+ Sbjct: 88 HPLLYNYVFIHASEAEIYRMK-RFLPQYNFLPRVREKDDAYYPYLSDEAMENLKWVAASY 146 Query: 115 QRPVSSVFF-----EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G+R+ +++G F V + R V V Sbjct: 147 SDVLPVYTPGPERLMKGDRIRITEGQFKGVEASVI-IQPGGGRKEVMV 193 >gi|298376654|ref|ZP_06986609.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|301309917|ref|ZP_07215856.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|298266532|gb|EFI08190.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|300831491|gb|EFK62122.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 370 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|298378121|ref|ZP_06988051.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298264975|gb|EFI06658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 231 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 10/145 (6%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVY---HTI 79 R R G + E PS G+ VN++R YV + A + Sbjct: 5 LSRRERRG--EALFEYFSPSYVEARKVGGKMVNTKRPLLYNYVFVHASEDEIFRLKRTLP 62 Query: 80 KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDGP 135 G ++D E++ + + V G+RV ++ GP Sbjct: 63 LYNFLPRVSSGGRSYFPYLSDREMDTLRWVAASYSNELPVYVPDSGRLLKGDRVRITSGP 122 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIF 160 F V V V V I Sbjct: 123 FTDMEAEVV-VQPGGGHKDVMVRIL 146 >gi|16082397|ref|NP_394879.1| transcription antitermination protein NusG [Thermoplasma acidophilum DSM 1728] gi|10640767|emb|CAC12545.1| probable transcription termination-antitermination factor related protein [Thermoplasma acidophilum] Length = 299 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 22/169 (13%) Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66 ++ E + + R + D +PSE + GY+ Sbjct: 149 ALKTTVGSEVQVAIDLNNRAEKDREDRSGDGKKLPSEVYAIMAPYE--------IKGYIF 200 Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 ++ + D++ + +D G + + + + E+G Sbjct: 201 VETMHPDRISYLARDIRGYKGMVSGKIDLEEIAHYLTPK------------PAVSGLELG 248 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVE 174 V + +GPF + ++D K V V V PV + + Sbjct: 249 SLVELVEGPFKGEKAKIISIDSVKEEVTVQLVESM-VPIPVTVKAESIR 296 >gi|224535786|ref|ZP_03676325.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus DSM 14838] gi|224522509|gb|EEF91614.1| hypothetical protein BACCELL_00650 [Bacteroides cellulosilyticus DSM 14838] Length = 206 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 8/159 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ S LD + +P+ V+S K R+ SE Sbjct: 35 KHWFAARTRDKQEFAVRKSLDKLKSEEKLD---LDYYLPTRIVISQLKYRRKRSEVPVIR 91 Query: 63 GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS- 120 + I A T + + + V D ++E M ++ Sbjct: 92 NLIFICATKQTACDISNVYNVQLFYMKDLFTHSMLVVPDKQMEDFMFVMDLNPDGVNFDN 151 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 F +G++V V G F+ G V E ++ +V + I Sbjct: 152 EPFAIGDKVKVVKGDFSGIEG---EVATEANKTYVVIRI 187 >gi|150008057|ref|YP_001302800.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149936481|gb|ABR43178.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 370 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|262384907|ref|ZP_06078036.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293459|gb|EEY81398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 370 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|255014262|ref|ZP_05286388.1| putative transcriptional regulator Updx-like protein [Bacteroides sp. 2_1_7] Length = 177 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 22/169 (13%) Query: 1 MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M W++++ N R + L+ EI P + RKG+++ Sbjct: 1 MEHPLTDNWFVLRDLTRPN----------KRPAYRLLEEKGIEIFTPMRWRLVERKGKRI 50 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 E + + T + G P V +E+ + V + Sbjct: 51 REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 110 Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 V G + + GP + G + ++ + R+ VE+ Sbjct: 111 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGSRVKRLIVEI 159 >gi|256840763|ref|ZP_05546271.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738035|gb|EEU51361.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 370 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|301309846|ref|ZP_07215785.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300831420|gb|EFK62051.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 367 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRERRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV I++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|255022915|ref|ZP_05294901.1| transcription antitermination protein NusG [Listeria monocytogenes FSL J1-208] Length = 27 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 20/27 (74%) Query: 150 KSRVHVEVVIFGRVTPVELAYNQVEKI 176 K + V V +FGR TPVE+ +NQ+EK+ Sbjct: 1 KGKAKVMVNMFGRETPVEVDFNQIEKL 27 >gi|256840830|ref|ZP_05546338.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738102|gb|EEU51428.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 371 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKAV--ESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + + LSR + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSRGLDAELSRRERRGETLFEYFAPSYVEVRKVDGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G + ++DSE+ ++ E+ Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQTLPLYNFLPRVSSGGTPHFPYLSDSEMGNLRWVAESY 146 Query: 114 VQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 V G+RV ++ G FA V Sbjct: 147 SNELPVYVPDSGRLLKGDRVRITSGYFAGMEAEVV 181 >gi|237725565|ref|ZP_04556046.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436252|gb|EEO46329.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 182 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + + IP V +R GRK Sbjct: 7 MQWFAMRATYRRGMQVKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118 + + AV ++ K V D ++ + + Sbjct: 58 DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 118 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159 >gi|330508664|ref|YP_004385092.1| 50S ribosomal protein L24 [Methanosaeta concilii GP-6] gi|328929472|gb|AEB69274.1| ribosomal protein L24 [Methanosaeta concilii GP-6] Length = 151 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y+V+ +N E+ I + D + + +P GYV Sbjct: 7 YVVKTTANQERSVANMIAQIARKEKYD--IRALLVPDV-----------------LKGYV 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ + V I+ P + N V + + Sbjct: 48 LVESPAPEIVDQAIQGIPHARSVIKGASNIGEVEHFLTPK------------PAVIGINE 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF VK VD K + VE+ Sbjct: 96 GAIVELISGPFKGEKARVKRVDLAKEEITVEL 127 >gi|256841520|ref|ZP_05547027.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298376269|ref|ZP_06986225.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] gi|256737363|gb|EEU50690.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267306|gb|EFI08963.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] Length = 178 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 21/169 (12%) Query: 1 MTP----RWYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV 54 M W++++ N R + L+ E+ P + RKG+++ Sbjct: 1 MEHPLTDNWFVLRDLTRPN---------AKRPAYRLLEEKGIEVFTPMRWQLVERKGKRI 51 Query: 55 NSERRFFPGYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 E + + T + G P V +E+ + V + Sbjct: 52 REEVPLLHDLLFAHTTCACMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFIRAVHSD 111 Query: 114 VQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 V G + + GP + G + ++ + R+ VE+ Sbjct: 112 DSPRYFLVEELTPAMYGRMIRIEGGPLDGYEGRLLSIRGARVKRLIVEI 160 >gi|255014894|ref|ZP_05287020.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] Length = 186 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ K +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDKISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|189466308|ref|ZP_03015093.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM 17393] gi|189434572|gb|EDV03557.1| hypothetical protein BACINT_02682 [Bacteroides intestinalis DSM 17393] Length = 190 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ V+V + E + E IP + ++ G++V Sbjct: 18 HWFAVRVSYSRELALKAILDEE---------NIESFIPMRYGIVMKGGKRVRKLVPAIHN 68 Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V I + + P P + D+++ + + + + Sbjct: 69 LVFIHSTRKRIDALKDELEGKMPIRFIMNREYCRPVVIPDAQMRSFILVAGSYDEAVLYI 128 Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 E G++V ++DG F G + ++ RV V + Sbjct: 129 ESTELNLVKGQKVRITDGVFKGVIGEFVRIRHDR-RVVVNIE 169 >gi|20094259|ref|NP_614106.1| transcription antitermination protein NusG [Methanopyrus kandleri AV19] gi|19887296|gb|AAM02036.1| Transcription antiterminator NusG [Methanopyrus kandleri AV19] Length = 163 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+V + E+ + + R R + + +R Sbjct: 10 YAVRVQAGREEATADMLVMRARRKVKEEGIETGLKAVIAPEELRG--------------- 54 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 + + + + G E P + E +V Sbjct: 55 YVIIEVEELTDELRDLIHDLPDTRGIVEKPMDFEEIEH---------YFAPKPEAVEISE 105 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V +VDE + + VE+ Sbjct: 106 GDVVEILSGPFKGEKARVVSVDESRREITVEL 137 >gi|305663812|ref|YP_003860100.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230] gi|304378381|gb|ADM28220.1| NusG antitermination factor [Ignisphaera aggregans DSM 17230] Length = 166 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ + E I R S L GY+ Sbjct: 23 FAIRTTAGQETNVALMIEVRAKTSNL-------------------PIYSILSLPNLKGYI 63 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++ VY I+ V G + + ++ +V Sbjct: 64 VLETPGLHIVYEAIRGLKHVKGKTSGTLRWEDLEALIKPRSLIEL------------IQV 111 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 GE V V GPF + +D+ ++ V + V Sbjct: 112 GEEVEVVAGPFRGMKAKIIAIDKTRNEVSLNV 143 >gi|317131095|ref|YP_004090409.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3] gi|315469074|gb|ADU25678.1| NGN domain-containing protein [Ethanoligenens harbinense YUAN-3] Length = 164 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 17/158 (10%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ Y++QV S EK ++ P E G Sbjct: 1 MSM--YVLQVLSGAEKDVCAALL---------DQGIPAYTPEENRQIRSGGLWRARPYLL 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKV-IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 F GYV + Y+ I+ P V + +T E + I ++ S Sbjct: 50 FRGYVFVVVRDVRASYYQIRRIPGVLRWLELHAGQATALTPGEEDRIRRMGGQLLE---S 106 Query: 120 SVFFEVGERVCVSDGPFASF--NGIVKNVDEEKSRVHV 155 V + DGP + G+ + R +V Sbjct: 107 HVLQLADDLFEPVDGPLKEYADAGVRILYNRHLRRAYV 144 >gi|330995495|ref|ZP_08319400.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila YIT 11841] gi|329575563|gb|EGG57101.1| hypothetical protein HMPREF9442_00460 [Paraprevotella xylaniphila YIT 11841] Length = 355 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 9/149 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRS-GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWYI+ + ++ RS D + E P V + G V +ER Sbjct: 17 RWYILVLPVRHRGDPARALRMEADRSVKRDEAMLEYFAPKYIEVKRKGGEFVPTERPLLY 76 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFL----GTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 YV I++ + G + ++D+E+ ++ EA Sbjct: 77 NYVFIRSTEAEIYRRQRSALHAYSFLPRVHSGGESHYPYLSDAEMRNLRWVAEAYRGELP 136 Query: 119 SSVFFE----VGERVCVSDGPFASFNGIV 143 V G+RV +++G F +V Sbjct: 137 VYVPESGRLVKGDRVRITEGEFKGVEAVV 165 >gi|255012551|ref|ZP_05284677.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] gi|256839010|ref|ZP_05544520.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374562|ref|ZP_06984520.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|256739929|gb|EEU53253.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298268930|gb|EFI10585.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 365 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ + K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + + YV I A + +G ++D E+E + E+ Sbjct: 83 TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ G F V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193 >gi|224540681|ref|ZP_03681220.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus DSM 14838] gi|224517705|gb|EEF86810.1| hypothetical protein BACCELL_05595 [Bacteroides cellulosilyticus DSM 14838] Length = 178 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 13/160 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY +V K E I L+R ++ + I ER + RK F Sbjct: 8 MHWYAFKV---FYNKVFE-IEDSLNRDKIETYIPCERILVERGGVKKYVRKPIISSLLFF 63 Query: 63 G-----YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 + ++ +TD+V + + E + ++ P Sbjct: 64 YSTEKQALALQQKLTDRVLLYTRLVNWQKLPIAIPEREMKIFMLVTSSGEKGLDYFGDVP 123 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + + GERV V+DGPF G + + R+ V + Sbjct: 124 M---EYSTGERVLVTDGPFKGAEGCIHRIKG-NRRLIVAI 159 >gi|154151802|ref|YP_001405420.1| ribosomal protein L24 [Candidatus Methanoregula boonei 6A8] gi|154000354|gb|ABS56777.1| ribosomal protein L24 [Methanoregula boonei 6A8] Length = 174 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 28/152 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ S E+ ++I + D VT I +P GYV Sbjct: 26 FAIKTTSKQERTVADNILKAIETKATDIKVTSIIVP-----------------NELQGYV 68 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++ + + + G+ + +V + + Sbjct: 69 LVETPEERNRIEQLVEMIAHARAVAKGQT-----------TLAEVGHFLIPKPVVSGIDE 117 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF +VK VD K + VE+ Sbjct: 118 GTIVELIAGPFKGEKAVVKRVDSAKEEITVEL 149 >gi|313159096|gb|EFR58471.1| transcription termination/antitermination factor NusG [Alistipes sp. HGB5] Length = 182 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 20/185 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY+++V E E + +++ V KG+ + Sbjct: 8 AAEWYVLRVTYQRELSTKEYLDK----LNIENFVPVR----VVRRRNSKGQFFRACEVAV 59 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP-- 117 Y+ I++ P + + GEN + E V Sbjct: 60 HNYIFIRSTREVIDELKTYKLPMLRYVMHPQNGENQIMIVPEEQMRNFIAVAGNEDEQVL 119 Query: 118 ---VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV---ELAYN 171 V G++V ++ G F G++ V + + V V I G +T V + Sbjct: 120 FMSPEEVALSKGDKVRITGGVFEGVEGLLMRVKNSRGK-RVVVKIDG-ITAVATASIPSA 177 Query: 172 QVEKI 176 VEKI Sbjct: 178 LVEKI 182 >gi|301308235|ref|ZP_07214189.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300833705|gb|EFK64321.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 365 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY++ + K +++ R R G + E PS G+ VN Sbjct: 26 RWYVL-TLPTAVGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + + YV I A + +G ++D E+E + E+ Sbjct: 83 TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ G F V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193 >gi|254166694|ref|ZP_04873548.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469] gi|289596539|ref|YP_003483235.1| NusG antitermination factor [Aciduliprofundum boonei T469] gi|197624304|gb|EDY36865.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469] gi|289534326|gb|ADD08673.1| NusG antitermination factor [Aciduliprofundum boonei T469] Length = 277 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 30/151 (19%) Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66 V+ E K IG + G + + P GYV Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAP-----------------YNLKGYVF 174 Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 ++ DKV I+ G + + + + VG Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGEMHLEEIKHYLTPT------------PTIHRISVG 222 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + V + +GPF + V +DE K + VE+ Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253 >gi|150008463|ref|YP_001303206.1| putative transcriptional regulator Updx-like protein [Parabacteroides distasonis ATCC 8503] gi|149936887|gb|ABR43584.1| putative transcriptional regulator Updx-like protein [Parabacteroides distasonis ATCC 8503] Length = 178 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 17/161 (10%) Query: 5 WYIVQ--VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W++++ N R + L+ EI P + RKG+++ E Sbjct: 9 WFVLRDLTRPN---------AKRPAYRLLEEKGIEIFTPMRWRLVERKGKRIREEVPLLH 59 Query: 63 GYVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 + T + T + G P V +E+ + V + V Sbjct: 60 DLLFAHTTRTCMDPIVEEISTLQYRYLRGGYRKPMTVGHAEMNRFICAVHSDDSPRYFLV 119 Query: 122 FF----EVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV 157 G + + GP + G + ++ + R+ VE+ Sbjct: 120 EELTPAMYGRMIRIEGGPLDGYEGRLLSIRGTRVKRLIVEI 160 >gi|323498594|ref|ZP_08103586.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326] gi|323316292|gb|EGA69311.1| transcriptional activator RfaH [Vibrio sinaloensis DSM 21326] Length = 73 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 104 EHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRV 163 + +E A Q E G+ V V++G FA I + D E+ R + V + + Sbjct: 1 MFTLKGIEQAQQCLKQGCLPEKGDTVKVANGQFAGIEAIYQQADGER-RSILLVNMLSKQ 59 Query: 164 TPVELAYNQVE 174 V + +E Sbjct: 60 VEVTVDNQDLE 70 >gi|254168964|ref|ZP_04875803.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469] gi|197622070|gb|EDY34646.1| ribosomal protein L24, putative [Aciduliprofundum boonei T469] Length = 277 Score = 47.4 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 30/151 (19%) Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66 V+ E K IG + G + + P GYV Sbjct: 133 AVKTTIGQEVKVARDIGMKAKIHGWKE-IFSVLAP-----------------YNLKGYVF 174 Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 ++ DKV I+ G + + + + VG Sbjct: 175 VETSRPDKVLSLIRGIKDAKGVVRGEMHLEEIKHYLTPT------------PTIHRISVG 222 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + V + +GPF + V +DE K + VE+ Sbjct: 223 DIVELVEGPFKGEHAKVIQIDEAKDEITVEL 253 >gi|326634532|pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 163 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 31/155 (20%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M + + V+V E+ + I ++ L + I PS Sbjct: 1 MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY+ ++A V I+ G L P + E ++ + Sbjct: 42 VKGYIFVEAPNKGVVDEAIRGIRHARGVLPG---EVPFKEIEH---------FLEEKPAV 89 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 E G+ V V GPF V +DE K V V Sbjct: 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124 >gi|237709842|ref|ZP_04540323.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455935|gb|EEO61656.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 176 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + + IP V +R GRK Sbjct: 1 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 51 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118 + + AV ++ K V D ++ + + Sbjct: 52 DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 111 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 112 DEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 153 >gi|229525600|ref|ZP_04415005.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426] gi|229339181|gb|EEO04198.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426] Length = 106 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY++ + ++ L++ E P V + +G++ + FP Sbjct: 2 KRWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52 Query: 63 GYVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVT 99 Y+ ++ + T++ T V+ F+ G +P + Sbjct: 53 SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQ 90 >gi|294674231|ref|YP_003574847.1| hypothetical protein PRU_1545 [Prevotella ruminicola 23] gi|294473416|gb|ADE82805.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 230 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 43/178 (24%), Gaps = 32/178 (17%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 RWY+++ E A + + +P KGR + Sbjct: 44 KRWYVLRASYGREILAEQLLIQ---------SGVYAYVPKRYTYIEVKGRPKKVLQCLIA 94 Query: 63 GYVLIKAVMTDKVYHTIKD------------------TPKVIGFLGTGENPSPVTDSEIE 104 V + + + + P + + E+ Sbjct: 95 NIVFAYLIPRQAMMFVRNNDPDEPSPAPQLSEFLSFYYNHFVEGENWRNPPLTIPEHEML 154 Query: 105 HIMNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + + + ++ + V V G F G V + RV V + Sbjct: 155 NFIRATCTNDENLLMLQGGDFHYKTDDEVEVICGQFKGVRGRVIRA-RGQQRVLVALT 211 >gi|323693007|ref|ZP_08107227.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum WAL-14673] gi|323502888|gb|EGB18730.1| hypothetical protein HMPREF9475_02090 [Clostridium symbiosum WAL-14673] Length = 181 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E++ VE + L ++ +++ G + FP Y Sbjct: 2 WYVIQTITGKEQELVELVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 V + D+V++ +K P+ LG + E + + A Sbjct: 58 VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFLELLCANESPVDNADKGA 117 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V+ + + DGP F + ++ K +E I G L Sbjct: 118 GYYLVRNTKVYLDAQGEIERLDGPLEYFKEKIIRLNLRKRYALIETAIRGEQQTAMLGIK 177 Query: 172 QVEK 175 +EK Sbjct: 178 -LEK 180 >gi|261403043|ref|YP_003247267.1| NusG antitermination factor [Methanocaldococcus vulcanius M7] gi|261370036|gb|ACX72785.1| NusG antitermination factor [Methanocaldococcus vulcanius M7] Length = 147 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 51/172 (29%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + R + LD GYV Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VHSILASESLKGYV 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A V IK P++ G + + + E Sbjct: 44 LVEAETKGDVEELIKGMPRIRGIVPGTISIEEIEPLLTPK------------KIIENIEK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K V +E+ P+ L V KIV Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAVPIPITLPVEGV-KIV 142 >gi|254501341|ref|ZP_05113492.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11] gi|222437412|gb|EEE44091.1| hypothetical protein SADFL11_1378 [Labrenzia alexandrii DFL-11] Length = 202 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 24/183 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W +V+ NCE +A ES+ S +GL + + + + + + K Y Sbjct: 31 WIVVRSNPNCESRAAESL----SAAGLIAWLPMLPVLRKNSRTRNEFDKSRPLC---TRY 83 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + + + + T +V+ G E + HI+ + + V Sbjct: 84 LFVALD-----RYKGQSTSEVVVCDGV-EKVLSFDEENRPHIVPKAQMRVIVEQCWNAIT 137 Query: 125 VGERVCVSD---GP--------FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G V G F G V DE K V V +FGR V++A ++V Sbjct: 138 EGNLSKVKHFDIGAVFGLLADEFDGVTGTVTGYDEAKGIVEGLVPMFGREMAVKVAVDKV 197 Query: 174 EKI 176 + + Sbjct: 198 KAV 200 >gi|11498148|ref|NP_069373.1| transcription antitermination protein NusG [Archaeoglobus fulgidus DSM 4304] gi|2650084|gb|AAB90698.1| LSU ribosomal protein L24A (rpl24A) [Archaeoglobus fulgidus DSM 4304] Length = 150 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 32/157 (20%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ R++ V+ +N E+ + + L V I P + Sbjct: 1 MS-RFFAVKTTANQERVVANLMDMAARKHNL--KVYSILAP-----------------KE 40 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY++++A D + I+ P V G + + S + ++ Sbjct: 41 LKGYIIVEAETPDDLLKAIRGLPHVKGVVKGEISFSEIEHFLTPK------------KAA 88 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G++V + GPF IVK VDE K+ + VE+ Sbjct: 89 EQIREGDKVEIVSGPFKGEMAIVKRVDEAKNEITVEL 125 >gi|18978362|ref|NP_579719.1| transcription antitermination protein NusG [Pyrococcus furiosus DSM 3638] gi|320089854|pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus Transcription Elongation Factor Spt45 gi|320089856|pdb|3P8B|D Chain D, X-Ray Crystal Structure Of Pyrococcus Furiosus Transcription Elongation Factor Spt45 gi|18894196|gb|AAL82114.1| transcription antitermination protein nusG [Pyrococcus furiosus DSM 3638] Length = 152 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 31/155 (20%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M + + V+V E+ + I ++ L + I PS Sbjct: 1 MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR----------------- 41 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY+ ++A V I+ G L P + E ++ + Sbjct: 42 VKGYIFVEAPNKGVVDEAIRGIRHARGVLPG---EVPFKEIEH---------FLEEKPAV 89 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 E G+ V V GPF V +DE K V V Sbjct: 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124 >gi|300711886|ref|YP_003737700.1| NusG antitermination factor [Halalkalicoccus jeotgali B3] gi|299125569|gb|ADJ15908.1| NusG antitermination factor [Halalkalicoccus jeotgali B3] Length = 145 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + I R + + P YV Sbjct: 4 YAVKTTASQERTVADMIMNREEPA-----IHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ + + + P + + + V Sbjct: 42 MVESDDHAIIERVLDEIPHARSIVPGQSSITEVEHFLSPK------------PDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|253567525|ref|ZP_04844959.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251943661|gb|EES84247.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 279 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV +++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFVRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSDRLLKGDRVRITSGYFTGMEAEVV 180 >gi|290558848|gb|EFD92240.1| KOW domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 158 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 ++ + VG+ V V GPF VK V++EK + V P+ + N Sbjct: 90 EKKQQKIDVNVGDVVKVLSGPFKGETATVKGVNKEKQELTVM--FLESAVPINVNIN 144 >gi|255013307|ref|ZP_05285433.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] Length = 186 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 4 RWYIVQVYS----NCEKKA--VESIGGRLSRSGL-DHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + +S+ LSR + E PS V G+ VN+ Sbjct: 27 RWYVL-TLPTTGVARRDRISPAKSLDAELSRRKRRGETLFEYFAPSYVEVRKVDGKMVNT 85 Query: 57 ERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGF-----LGTGENPSPVTDSEIEHIMNQVE 111 +R YV I++ + + +K T + F G + ++D E+ ++ E Sbjct: 86 KRPLLFNYVFIRSSVEE--IFQMKRTLPLYNFLPRVSSGGMTHFPYLSDDEMGNLRWVAE 143 Query: 112 AAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 + V G+RV ++ G F V Sbjct: 144 SYSNELPVYVPDSNRLLKGDRVRITSGYFTGMEAEVV 180 >gi|167755355|ref|ZP_02427482.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402] gi|167704294|gb|EDS18873.1| hypothetical protein CLORAM_00869 [Clostridium ramosum DSM 1402] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 16/173 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WYI+ + K + + + + +P + + G+KV +E FP Sbjct: 65 MNWYIIFA---NDNKINDLLLYFNNHPEM-----TAFVPKIEKLMKKDGKKVFAEVPMFP 116 Query: 63 GYVLIKAVMTDKVYHTI-----KDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 Y+ I++ + ++ I KD + + + E + + ++ + Sbjct: 117 NYIFIESEFNSQEFYQIIESLEKDMDSTMRIMQSDEQKVLSLANNEKELLESLFNDDHLI 176 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR--VTPVEL 168 S+ ++ V GP ++K +D K + +FG+ P+E+ Sbjct: 177 TRSMGTITDSKLIVQKGPLVGKEEMIKKIDRHKRVAFIG-DVFGKTMKVPLEV 228 >gi|220922583|ref|YP_002497885.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219947190|gb|ACL57582.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 196 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 4/144 (2%) Query: 31 LDHLVTEITIP-SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFL 89 L P VV K R FPGY + ++ + I P V + Sbjct: 53 LQQAGFATLAPGRTAVVRQASSGKRLVRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALV 111 Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 TGE P+ + + ++ + VG++V + D + G V E Sbjct: 112 TTGEAPTELPPW-MMKMLIAADEMGAYDRPRPQLAVGDKVRIRDELWQGLIGEVMRA-PE 169 Query: 150 KSRVHVEVVIFGRVTPVELAYNQV 173 R+ V + FG+ + + +++ Sbjct: 170 GRRIAVLLKAFGKKHVLSVDVDRL 193 >gi|312136370|ref|YP_004003707.1| lsu ribosomal protein l24a [Methanothermus fervidus DSM 2088] gi|311224089|gb|ADP76945.1| LSU ribosomal protein L24A [Methanothermus fervidus DSM 2088] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 31/174 (17%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M + Y ++ + EK + ++ S +D ++ I + Sbjct: 1 MKSKIYALKTSAGQEKNVARMLTKKVKNSDID--ISAILVSES----------------- 41 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GY+L+++ + + I P + G + + Sbjct: 42 LKGYILVESSSKLDMRNPIFRMPHLRGIVEGSVKFKEIEKFLKP------------EPIV 89 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G V + GPF V VDE K V +E++ PV + +QV Sbjct: 90 TSIKRGSIVELIAGPFKGERAKVIRVDESKEEVVLELIEAAVPIPVTVKADQVR 143 >gi|222479330|ref|YP_002565567.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239] gi|222452232|gb|ACM56497.1| NusG antitermination factor [Halorubrum lacusprofundi ATCC 49239] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 29/169 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ + + + + + + V + YV Sbjct: 4 FSVKTTARQERTVADMLAEK---------------------EMPEIQAVIAPD-QLTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + + P G + E P+ SE+EH ++ Sbjct: 42 MVEATDGSVFARILDEIPHARGVIQGSEGPAESPFSEVEHFLSPTPDVE-------GIAE 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 95 GDIVELIAGPFKGEKARVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 143 >gi|323486157|ref|ZP_08091486.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum WAL-14163] gi|323400483|gb|EGA92852.1| hypothetical protein HMPREF9474_03237 [Clostridium symbiosum WAL-14163] Length = 181 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY++Q + E++ V+ + L ++ +++ G + FP Y Sbjct: 2 WYVIQTITGKEQELVDLVYKMLPKTVYKECFF----LKRQLLKRLGGEWLEVTETLFPAY 57 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ--------- 115 V + D+V++ +K P+ LG + E + + A Sbjct: 58 VFLDLTNADEVFYELKRIPEFSKLLGDNLGEFIPLEEEERKFLELLCANESPVDNADKGA 117 Query: 116 ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYN 171 + V+ + + DGP F + ++ K +E I G L Sbjct: 118 GYYLVRNTKVYLDAQGEIERLDGPLEYFKEKIIRLNLRKRYALIETAIRGEQQTAMLGIK 177 Query: 172 QVEK 175 +EK Sbjct: 178 -LEK 180 >gi|322371074|ref|ZP_08045626.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253] gi|320549064|gb|EFW90726.1| NusG antitermination factor [Haladaptatus paucihalophilus DX253] Length = 145 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + I R + + P YV Sbjct: 4 YAVKTTASQERTVADMIINREEPE-----IHAVLAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + +++ P + N S E+EH ++ Sbjct: 42 MVEADDHRVINRVLEEIPHARSMVPGESNIS-----EVEHFLSPTPDVE-------GIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|284165911|ref|YP_003404190.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511] gi|284015566|gb|ADB61517.1| NusG antitermination factor [Haloterrigena turkmenica DSM 5511] Length = 145 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ ++ E+ + I R + P YV Sbjct: 4 YAVKTTASQERTVADMIINREEPE-----IHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ + ++D P + + S V Sbjct: 42 MVESEGDAVLNRVLEDIPHARSIVPGKSDISEVEHFLSPK------------PDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|150010187|ref|YP_001304930.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149938611|gb|ABR45308.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 365 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 52/172 (30%), Gaps = 19/172 (11%) Query: 4 RWYIVQVYS----NCEK----KAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN 55 RWY + + K +++ R R G + E PS G+ VN Sbjct: 26 RWYAL-TLPTAIGGRDNIYSSKGLDAELSRRKRCG--EPLFEYFAPSYVEARKVGGKMVN 82 Query: 56 SERRFFPGYVLIKAVMTDKVY---HTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA 112 + + YV I A + +G ++D E+E + E+ Sbjct: 83 TRKPLLYNYVFIHASENEIFRLKRIMPLYNLLPRVSVGEHSYFPYLSDHEMETLRWMAES 142 Query: 113 AVQRPVSSVF----FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G+RV ++ G F V V V V I Sbjct: 143 YSNELPVYVPDSGRLLKGDRVRITSGSFMGMEAEVV-VQPGGGHKDVMVRIL 193 >gi|150005956|ref|YP_001300700.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|254881848|ref|ZP_05254558.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641132|ref|ZP_07995835.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] gi|149934380|gb|ABR41078.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|254834641|gb|EET14950.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387263|gb|EFV68139.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] Length = 182 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 14/163 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + + IP V +R GRK Sbjct: 7 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118 + + +V ++ K V D ++ + + Sbjct: 58 DLIFVHSVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 118 DEVNLRKGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159 >gi|262384292|ref|ZP_06077427.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293995|gb|EEY81928.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 373 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R V E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETVFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181 >gi|169350050|ref|ZP_02866988.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552] gi|169293263|gb|EDS75396.1| hypothetical protein CLOSPI_00790 [Clostridium spiroforme DSM 1552] Length = 171 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 13/171 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ K ++ + + IP K K + +P Sbjct: 5 MYWYVIHA------KVDRG--SKIVKFFNSQKGVDAFIPKIEKWHNVKSVKDYVIKDLYP 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE----NPSPVTDSEIEHIMNQVEAAVQRPV 118 YV +K+ M ++ ++ G GE + +M ++ Sbjct: 57 DYVFVKSDMDNEAFNKKFK-EFFESIEGFGELLEYEGVYALKDTEQDLMEKLFNGGHIIK 115 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 S+ V +++ V GP + +V ++ ++ F + V L Sbjct: 116 RSIGNIVDKKLIVDTGPLLGLDDLVVKINRHHRVATLQTEFFDKKIMVPLE 166 >gi|153808766|ref|ZP_01961434.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185] gi|149128592|gb|EDM19810.1| hypothetical protein BACCAC_03066 [Bacteroides caccae ATCC 43185] Length = 182 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 17/182 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY+++ + L E+ P + + ++ G+++ E F Sbjct: 10 MHWYVMR-------DLKRPNAKLPAYKQLSDEHLEVFTPMQWRLKLKNGKRIREEVPFMQ 62 Query: 63 GYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----R 116 + I D I G P V D ++E + V + Sbjct: 63 DLLFIHDTREVLDLFVRKIPTLQYRYQKGGGYCQPMMVADLDMERFIRAVRGSENPKYYL 122 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV-VIFGRVTPVELAYNQVE 174 P G + + GPF + G + K R+ VE+ F VE+ + +E Sbjct: 123 PEEISDTMYGRMIRIIGGPFEGYEGRLLTTRGSKVKRLLVELPNFF--SVGVEVNPDLIE 180 Query: 175 KI 176 I Sbjct: 181 II 182 >gi|253571872|ref|ZP_04849277.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838469|gb|EES66555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 105 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Query: 78 TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ-RPVSSVFFEVGERVCVSDGPF 136 T + +P+ + D ++ ++ + + ++S GE+V V GP Sbjct: 4 LSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPL 63 Query: 137 ASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G + NVD KS++ V + + G V++ VE I+ Sbjct: 64 TGLVGELVNVDG-KSKIAVRLNMLGCAC-VDMPVGYVEPIM 102 >gi|15668548|ref|NP_247346.1| transcription antitermination protein NusG [Methanocaldococcus jannaschii DSM 2661] gi|2499343|sp|Q57818|NUSG_METJA RecName: Full=Putative transcription antitermination protein nusG gi|1591079|gb|AAB98361.1| LSU ribosomal protein L24A [Methanocaldococcus jannaschii DSM 2661] Length = 147 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 50/172 (29%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + R + LD GYV Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VYSILASESLKGYV 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A V IK P+V G + + E Sbjct: 44 LVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPK------------KIIENIEK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K V +E+ P+ L V KIV Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAVPIPITLPVEGV-KIV 142 >gi|329964950|ref|ZP_08301958.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328524591|gb|EGF51659.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 178 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + S E + I +D E +P+ VV+ K R+ S Sbjct: 6 KYWFAARTLSKQEFAVQKRIEKLKLEEKMD---VECYLPTRTVVTQLKYRRKRSIVPVAR 62 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG---TGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 G + I A T + I + V F + + V D +++ M ++ Sbjct: 63 GLIFIHA--TKQCACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVSF 120 Query: 120 SVFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 +G++V V G F+ G + E ++ +V + I G Sbjct: 121 DNEPLTIGKKVTVIKGEFSGIEG---EIATEANKTYVVIRITG 160 >gi|301308790|ref|ZP_07214742.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300833314|gb|EFK63932.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 373 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181 >gi|255016016|ref|ZP_05288142.1| putative transcriptional regulator UpxY-like protein [Bacteroides sp. 2_1_7] Length = 373 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181 >gi|319901978|ref|YP_004161706.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319417009|gb|ADV44120.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] Length = 178 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVT-EITIPSERVVSVRKGRKVNSERRFF 61 W+ + S E R+ + L+ + E +P+ VV+ K R+ S Sbjct: 6 KYWFAARTLSKQEFAVQ----KRIEKLNLEEKMDVECYLPTRTVVTQLKYRRKRSVVPVA 61 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVS 119 G + I A +V + V + V Sbjct: 62 RGLIFIHATKQSACDIPNIYGVQVFYMKDLSTHSMLVVPDKQMQDFMFVMDLNPDGVSFD 121 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + +G +V V G F+ G + E ++ +V + I G Sbjct: 122 NEPLTIGRKVTVVKGEFSGIEG---EIATEANKTYVVIRITG 160 >gi|218529585|ref|YP_002420401.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum CM4] gi|218521888|gb|ACK82473.1| hypothetical protein Mchl_1609 [Methylobacterium chloromethanicum CM4] Length = 238 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 23/193 (11%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV-TEITIPSERVVSVRKGRKVNSERRF 60 +WY+ + E A S+ R + +P E + RR Sbjct: 44 ALKWYVCTTAPSRELSAAASVRQATLRGRREGETPFAAYVPCEFFWHRAIRSNLRVPRRE 103 Query: 61 FPGYVLIKAVMTDKVYHTI--------------KDTPKVIGFLGTGENPSPVTDSEIEHI 106 +L ++ + ++ + G LG + E Sbjct: 104 IQRPILRHYILVGVLGGLCDETLAALRDRDREGRNVHGLAGILGAPGIGPLAMNGEGLRW 163 Query: 107 MNQVEAAVQR----PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + +S + GE V G F+ F G E + + + + R Sbjct: 164 LRAQGEDEIAGATNRSASGTIQPGEDVRAGSGVFSGFLGKFIGTAEGGTVGVIALDM--R 221 Query: 163 VTP--VELAYNQV 173 T V L V Sbjct: 222 STSCEVRLPIEDV 234 >gi|294775545|ref|ZP_06741055.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] gi|294450595|gb|EFG19085.1| transcription termination/antitermination factor NusG [Bacteroides vulgatus PC510] Length = 182 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 14/163 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + + IP V +R GRK Sbjct: 7 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118 + + +V ++ K V D ++ + + Sbjct: 58 DLIFVHSVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 117 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 118 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 159 >gi|212693036|ref|ZP_03301164.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855] gi|212664403|gb|EEB24975.1| hypothetical protein BACDOR_02543 [Bacteroides dorei DSM 17855] Length = 184 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 14/163 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + + IP V +R GRK Sbjct: 9 MQWFAMRATYRRGMQIKALLDKEGINN---------FIPMRYEVRIRNGRKRRELVPVIS 59 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PV 118 + + AV ++ K V D ++ + + Sbjct: 60 DLIFVHAVQSELQKVKFKLPYFQYMIDIRNGQKIIVPDDQMRQFIAVAGTYDEHLIFFSP 119 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 120 DEVNLRRGTKVRITGGDFEGYEGVFVKVKGARDR-RVVISLQG 161 >gi|150006961|ref|YP_001301704.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149935385|gb|ABR42082.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 373 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGEALFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESARLLKGDRVRITSGYFTGMEAEVV 181 >gi|298377389|ref|ZP_06987342.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298265803|gb|EFI07463.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 373 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETLFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181 >gi|148230569|ref|NP_001084514.1| G patch domain and KOW motifs-containing protein [Xenopus laevis] gi|82185478|sp|Q6NU07|GPKOW_XENLA RecName: Full=G patch domain and KOW motifs-containing protein gi|46250332|gb|AAH68795.1| MGC81356 protein [Xenopus laevis] Length = 487 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 LG G + S + E + ++ + S G V + G + G V+ +D Sbjct: 193 LGLGADRSALKHLEPQKPRKPLKPGEEPEEESKGLGTGSAVQIQSGAYKDMYGKVEGIDP 252 Query: 149 EKSRVHVEVVIFGRVTPVEL 168 + SR + + I G+V V L Sbjct: 253 DNSRAMITLAIGGKVVTVSL 272 >gi|269986702|gb|EEZ92982.1| NusG antitermination factor [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 158 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 32/152 (21%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 +I++V E +A+E + +L+R G + GY+ Sbjct: 13 FIIRVTIGREMQALERLQSQLARVN--------------------GIYSIVKPYSLKGYI 52 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + + + I + + G + E ++ +++ ++ + Sbjct: 53 IVEADSRESISNLIYNIKHIRGIMN------------KELSKDEALKTIEKKKQNIDINI 100 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V V GPF VK V++EK + V Sbjct: 101 GDVVKVLSGPFKGETATVKAVNKEKEELTVMF 132 >gi|256842037|ref|ZP_05547542.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736353|gb|EEU49682.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 373 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 15/155 (9%) Query: 4 RWYIVQVYS----NCEKKA---VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNS 56 RWY++ + R + E PS V G+ VN+ Sbjct: 28 RWYVL-TLPTAAGGRRDRISPSKGLDVELSRRERRGETLFEYFAPSYVEVRKVGGKLVNT 86 Query: 57 ERRFFPGYVLIKAVMTDKVYH---TIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA 113 R YV I++ + + G+ + D E+ ++ EA Sbjct: 87 RRPLLFNYVFIRSSVEEIFRMKQALPLYNFLPRVSSGSTTYFPHLLDQEMANLRWVAEAY 146 Query: 114 VQRPVSSVFFE----VGERVCVSDGPFASFNGIVK 144 V G+RV ++ G F V Sbjct: 147 SNELPVYVPESTRLLKGDRVRITSGYFTGMEAEVV 181 >gi|169351143|ref|ZP_02868081.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552] gi|169292205|gb|EDS74338.1| hypothetical protein CLOSPI_01922 [Clostridium spiroforme DSM 1552] Length = 163 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 15/171 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY++ V S E + L++ E +P F Sbjct: 1 MNWYVLYVLSYK----KEQLIKYLNKYE----DVEAFVPKYEYYRRVTKDYEIK--PMFN 50 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVT----DSEIEHIMNQVEAAVQRPV 118 GY+ +K+ M ++++ G + E + +++ Sbjct: 51 GYIFVKSTMNQLEFNSLL-MKMSKEKDGLLKQLVYPDTSALKKEEIEMFDRLLDENYVVK 109 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 S + +R + +GP F ++ VD+ ++ ++ R L Sbjct: 110 MSQAYLQDKRAIIINGPLKYFENDIRKVDKYNKVAYLNLLFMNREIKAGLE 160 >gi|256811382|ref|YP_003128751.1| NusG antitermination factor [Methanocaldococcus fervens AG86] gi|256794582|gb|ACV25251.1| NusG antitermination factor [Methanocaldococcus fervens AG86] Length = 147 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 51/172 (29%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + R + LD GYV Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLD-------------------VYSILASESLKGYV 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A V IK P+V G + + E Sbjct: 44 LVEAESKGDVEELIKGMPRVRGIVPGTVAIEEIEPLLTPK------------KIIENIEK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K V +E+ P+ L+ V KI+ Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELENATVPIPITLSVEGV-KII 142 >gi|330998531|ref|ZP_08322351.1| hypothetical protein HMPREF9442_03465 [Paraprevotella xylaniphila YIT 11841] gi|329568129|gb|EGG49948.1| hypothetical protein HMPREF9442_03465 [Paraprevotella xylaniphila YIT 11841] Length = 176 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 14/179 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 TP+WY+++ S K + L + P R V + G++ + + Sbjct: 4 TPQWYVLRDLSRPNSK-------LSAFDKLTGKGIKCFTPLVRKVVTQGGKQEWKDVPYM 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV-----TDSEIEHIMNQVEAAVQR 116 + + ++ G D I + + + + R Sbjct: 57 RDLLFAHSTHDVLDPFMAPGLRLQYRYVHGGFKEPMTVREADMDCFIRAVSSSISSKYYR 116 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVVI-FGRVTPVELAYNQV 173 P R+ + GP + G + V R+ VE+ + VE + Q+ Sbjct: 117 PEEITPAMRNRRIRIIGGPLHGYEGSLVTVRGTTVKRLLVELPMLLAAAVEVEPEFIQL 175 >gi|289192633|ref|YP_003458574.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22] gi|288939083|gb|ADC69838.1| NusG antitermination factor [Methanocaldococcus sp. FS406-22] Length = 147 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 50/172 (29%), Gaps = 32/172 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + R + L+ GYV Sbjct: 3 FAVRTMVGQEKNIAGLMASRAEKEQLN-------------------VYSILASESLKGYV 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A V IK P+V G + + E Sbjct: 44 LVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPK------------KIIENIEK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKIV 177 G+ V + GPF V VD+ K V +E+ P+ L V KIV Sbjct: 92 GDVVEIIAGPFKGERAKVIRVDKNKEEVTLELENAAVPIPITLPVEGV-KIV 142 >gi|189467016|ref|ZP_03015801.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM 17393] gi|189435280|gb|EDV04265.1| hypothetical protein BACINT_03398 [Bacteroides intestinalis DSM 17393] Length = 178 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 18/160 (11%) Query: 4 RWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 WY ++ YS ++ LD E IP VR K+ Sbjct: 9 NWYPLRITYSR----------ELALKNYLDSKQIENFIPMRYEYIVRNECKIRKLVPAIH 58 Query: 63 GYVLIKA---VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + + P + P + D ++ + Q+ Sbjct: 59 NLVFVRSTRKQLEEIKEAKGAILPIRYIMDCETQQPITIPDVQMRSFIAVAGNCDQQVVY 118 Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +++ + G+RV ++ G F G + +++ V V Sbjct: 119 LDPTTINLKRGQRVRITGGVFEGVEGEFVRIKDDRRVVVV 158 >gi|116783316|gb|ABK22888.1| unknown [Picea sitchensis] Length = 379 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 G V V G F F G +K +D + + + +++ G PV + Sbjct: 310 GSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNME 353 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 10/130 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSER-VVSVRKGRKVNSERRFFP 62 +W+++ V N E+ E + + + +P ++ G S++R FP Sbjct: 80 QWWMLLVPRNSERLVAEDLSKAFPSE-FPDIEFQAYLPEIPSRRKLKNGSYSESKKRMFP 138 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLG--------TGENPSPVTDSEIEHIMNQVEAAV 114 GY+ I+ + +++ I++TP+V GF+G P PV +E+E +V+ Sbjct: 139 GYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVKEEQ 198 Query: 115 QRPVSSVFFE 124 + + E Sbjct: 199 EAYDIEIQEE 208 >gi|53712820|ref|YP_098812.1| putative transcriptional regulator UpxY-like protein [Bacteroides fragilis YCH46] gi|52215685|dbj|BAD48278.1| putative transcriptional regulator UpxY homolog [Bacteroides fragilis YCH46] Length = 186 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 12 ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62 Query: 62 PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + D + + T + + + + V A Sbjct: 63 HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151 >gi|58332632|ref|NP_001011390.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis] gi|56788865|gb|AAH88579.1| G patch domain and KOW motifs [Xenopus (Silurana) tropicalis] Length = 306 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 LG G + S + D E + ++ + S G V + G G V+ VD Sbjct: 195 LGLGADRSALKDLEPQKPRKPLKPGEKLEEESRGLGKGSSVQIQSGAHKDLYGKVEGVDP 254 Query: 149 EKSRVHVEVVIFGRVTPVEL 168 + SR +++ I G+V V L Sbjct: 255 DNSRAMIKLAIGGKVVTVSL 274 >gi|329954481|ref|ZP_08295572.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328527449|gb|EGF54446.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 200 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 19/164 (11%) Query: 3 PRWYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 W+ ++V YS ++ L +++ IP ++ G++V Sbjct: 28 KCWFAIRVSYSR-----ELALKAILDAENIEN-----FIPMRYEYIMKSGKRVRKLLPAI 77 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 V + + + P P + ++++ + + + Sbjct: 78 HNLVFVYSTRKRIDALKDKLEPSMPIRFIMNREHCRPVVIPEAQMRSFILVAGNCDEAVL 137 Query: 119 SSVFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 E G++V ++ G F G + ++ RV V + Sbjct: 138 YVEPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 180 >gi|325181255|emb|CCA15669.1| transcription elongation factor SPT5 putative [Albugo laibachii Nc14] gi|325181812|emb|CCA16267.1| transcription elongation factor SPT5 putative [Albugo laibachii Nc14] Length = 1095 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%) Query: 58 RRFFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 + ++ + MT+ + + G+ + + +S + + Sbjct: 606 KHIHRCFLFLHNNRVMTNAGMFVAR--AHQVILSGSKARSNMIQNSTLPRMNGARPPRND 663 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 R + +G+ V + G + + GIV VDE +V VE+ + T V++ +V Sbjct: 664 RRNTREHEMIGKTVKMKKGRWKGYIGIV--VDESDQKVKVEIHC--KATTVDVDRQEV 717 Score = 35.8 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVELAYNQ 172 + +VG+ + V G ++ G V VD+ + V V + V + Q Sbjct: 457 KYVKVGDHIKVVSGMYSGETGTVVAVDDTEGAPVAIVLVDSMAKEIQVRVQDLQ 510 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 1/111 (0%) Query: 47 SVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 R + Y ++ + + + T +V L + V + E + Sbjct: 327 RRRYPATGEMMDFYDNDYYQDGFLIKEVNINMMLQTEEVNPRLDEINKFAAVAEREDDGN 386 Query: 107 MNQVEAAVQRP-VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + V G+ V V +G + GIV + + + V V Sbjct: 387 QELLASMETGDWKNKVELAKGDTVRVVEGDLLNLMGIVVSTNTANNLVRVM 437 >gi|218129971|ref|ZP_03458775.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697] gi|317476812|ref|ZP_07936055.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|217987829|gb|EEC54155.1| hypothetical protein BACEGG_01554 [Bacteroides eggerthii DSM 20697] gi|316906987|gb|EFV28698.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 172 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 49/163 (30%), Gaps = 17/163 (10%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ ++V + E + E IP ++ G++V Sbjct: 1 MNWFAIRVSYSRELALKAILDAEK---------IENFIPMRYEYVIKSGKRVRRLLPAIH 51 Query: 63 GYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V + + + P P + D+++ + + + Sbjct: 52 NLVFVHSTRKRIDALKDELESSMPIRFIMNREFCRPVVIPDAQMRSFILVAGSHEEAILY 111 Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + + G++V ++ G F G + ++ RV V + Sbjct: 112 VEPAELHLAKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 153 >gi|254477058|ref|ZP_05090444.1| hypothetical protein RR11_2897 [Ruegeria sp. R11] gi|214031301|gb|EEB72136.1| hypothetical protein RR11_2897 [Ruegeria sp. R11] Length = 218 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 36/202 (17%) Query: 2 TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36 WY V++ + E +K S + L Sbjct: 11 EMDWYAVKLKARPNGGRRETVLGVEFETYRARNGQMARRKVKGSGQRVFVPELVLQKAGF 70 Query: 37 EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 E+ +P V+ + R G++ + +H + V G +G G Sbjct: 71 EVFLPIKKEWSRVNRYSSEQKLKCRPAMEGWLFVGWAAGQARFHELMALDVVSGVMGAGG 130 Query: 94 NPSPVTDSEIEHIMNQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 P ++D+++ +M + A V F VG+ V V GPF V +D Sbjct: 131 QPVRISDAKVRFLMRKFGGGRLRRKASNVEAEPVRFSVGDLVRVDAGPFEGQ--TVSLLD 188 Query: 148 EEKSRVHVEVVIFGRVTPVELA 169 + + G+ V+L Sbjct: 189 VSGGSARAVMTLLGKDVEVDLE 210 >gi|265762924|ref|ZP_06091492.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255532|gb|EEZ26878.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 186 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 12 ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V +++ + P P V DS++ + M + Sbjct: 63 HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMCNFMAVSANYDESLL 122 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151 >gi|218884416|ref|YP_002428798.1| Putative transcription antitermination protein nusG [Desulfurococcus kamchatkensis 1221n] gi|218766032|gb|ACL11431.1| Putative transcription antitermination protein nusG [Desulfurococcus kamchatkensis 1221n] Length = 163 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 32/174 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 Y V+ E IG R+ G + + I IP Sbjct: 15 YAVKTTLGRELDTALIIGMRIDEMRARGEETSIGSIIIP-----------------PNVR 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV I+ ++Y I D + P V+ E E ++ + Sbjct: 58 GYVFIEVERLGELYKVISDIRYIK-----AGRPIKVSYEEFEKLLKPKPVIEE------- 105 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VG+ V ++ GPF + +D K+ + V ++ P+ + + V+KI Sbjct: 106 LNVGDEVEITRGPFRGMRARIAGIDRNKNMLTVNILEAAFTIPITIPGDYVKKI 159 >gi|301629057|ref|XP_002943665.1| PREDICTED: 50S ribosomal protein L1-like [Xenopus (Silurana) tropicalis] Length = 196 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSR 28 RWYIV YS EK +I R+ R Sbjct: 22 RWYIVHAYSGMEKAVERNITERIMR 46 >gi|257051976|ref|YP_003129809.1| transcription antitermination protein NusG [Halorhabdus utahensis DSM 12940] gi|256690739|gb|ACV11076.1| NusG antitermination factor [Halorhabdus utahensis DSM 12940] Length = 145 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ ++ E+ + I R + V P YV Sbjct: 4 FAVKTTASQERTVADMIMNRE-----EDSVHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + + P G + + E+EH ++ Sbjct: 42 MVEAEDASVFERILDEIPHANGVVQGKSSIK-----EVEHFLSPTPDVE-------GIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|289806726|ref|ZP_06537355.1| transcription antitermination protein NusG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 38 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHL 34 RWY+VQ +S E + S+ + ++ L Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEEL 38 >gi|13542274|ref|NP_111962.1| transcription antitermination protein NusG [Thermoplasma volcanium GSS1] gi|14325707|dbj|BAB60610.1| transcription termination-antitermination factor [nusG] [Thermoplasma volcanium GSS1] Length = 288 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 22/169 (13%) Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66 ++ E + + + R + PSE + GY+ Sbjct: 138 ALKTTVGSEVQVATDLNNKAERDRDERSQGGEKQPSEVFAIMAPYE--------IKGYIF 189 Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 ++ + D++ + KD G + + + + E+G Sbjct: 190 VETMHPDRISYLAKDIRGYKGMVSGKIDLEEIAHYLTPK------------PAVSGLELG 237 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQVE 174 V + +GPF + ++D K V V V PV + + Sbjct: 238 SLVELVEGPFKGEKAKIISIDSVKEEVTVQLVESM-VPIPVTVKAESIR 285 >gi|308805116|ref|XP_003079870.1| unnamed protein product [Ostreococcus tauri] gi|116058327|emb|CAL53516.1| unnamed protein product [Ostreococcus tauri] Length = 417 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 71 MTDKVYHTIKDTPKVIGFL---GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG- 126 M D++ I+ V+ E V + + E + EVG Sbjct: 306 MDDQIPRMIRKCVPVVKTDEQVKADEARVEVQEVARAGRQERDENDGDDLRPTSSSEVGA 365 Query: 127 ---ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVEL 168 +R+ V DGPF F G + + +++ V + IFGR T V L Sbjct: 366 ATYDRIEVHDGPFKGFKGFIVSENDD-GSVEATLAIFGRDTNVTL 409 >gi|255008330|ref|ZP_05280456.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 212 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 38 ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 88 Query: 62 PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + D + + T + + + + V A Sbjct: 89 HNLVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 148 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 149 YFEPSELNIRKGTRVRITGGLFEGVEGEF 177 >gi|84490055|ref|YP_448287.1| transcription antitermination protein NusG [Methanosphaera stadtmanae DSM 3091] gi|84373374|gb|ABC57644.1| putative transcription antiterminator [Methanosphaera stadtmanae DSM 3091] Length = 147 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 31/171 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++V EK + + ++ I P GY+ Sbjct: 3 YAMRVLIGQEKNVASLLAQSVKHEDTG--ISAILSPES-----------------MKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++ T + H P + G + E + +++++ + S V E Sbjct: 44 FVESDKTLDMRHPALKVPNLRGLV------------EGDVDFDELKSFLSPDQSIVNIEK 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V ++ GPF V +DE K V +E++ PV + +Q+ I Sbjct: 92 GSIVELTSGPFKDEKAKVVRIDEAKEDVVLELIEAAVPIPVTVKGDQIRLI 142 >gi|296110023|ref|YP_003616972.1| NusG antitermination factor [Methanocaldococcus infernus ME] gi|295434837|gb|ADG14008.1| NusG antitermination factor [Methanocaldococcus infernus ME] Length = 146 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ EK + + + L+ GY+ Sbjct: 3 FAVRTMGRQEKNVALLLSAKAEKENLN-------------------VSSILASDQLKGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A +++ IK PKV G++ P+ + E ++ +++ Sbjct: 44 FVEADNEEELKTLIKGVPKVKGYVRG---VIPLEEIEPLLSPKKIVEEIEK--------- 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VD+ K + +E+ Sbjct: 92 GDVVEIVAGPFKGERAKVIRVDKNKEEITLEL 123 >gi|150004276|ref|YP_001299020.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|149932700|gb|ABR39398.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] Length = 185 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 16/164 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 +W+ ++ + + D IP + ++ G + Sbjct: 7 MQWFAMRATYRRGMQIKGLL---------DQKGINSFIPMRYEIHLKNGHRRRELVPVIR 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117 V + ++ P + + E V Sbjct: 58 DIVFVHTTQSELQR-IKYGIPYFQYMMDIRNGEKIIVPDEQMRRFIAVAGTYDEQIIFFS 116 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V G +V ++ G F + G+ V + R V + + G Sbjct: 117 PDEVNLRKGTKVRITGGQFEGYEGVFVKVKGSRDR-RVVISLQG 159 >gi|53713117|ref|YP_099109.1| putative transcriptional regulatory protein UpxY-like protein [Bacteroides fragilis YCH46] gi|60681383|ref|YP_211527.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253566788|ref|ZP_04844240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763209|ref|ZP_06091777.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|11023504|gb|AAG26461.1|AF285774_1 putative transcriptional regulatory protein [Bacteroides fragilis] gi|52215982|dbj|BAD48575.1| putative transcriptional regulatory protein UpxY homolog [Bacteroides fragilis YCH46] gi|60492817|emb|CAH07591.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251944351|gb|EES84840.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255817|gb|EEZ27163.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162839|emb|CBW22386.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 174 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ + L++ + + + ++ E Sbjct: 6 KYWFAARTRDKQEFAIRDSLEKLKTELDLNYYLPTQFVIRQLKYRRKR-----VEVPVIK 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSS 120 + I+A D + K ++ + + V + Sbjct: 61 NLIFIQATKQDACDISNKYNIQLFYMKDLLTRAMLIVPDKQMQDFIFVMDLDPNGVSFDN 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 VG RV V G F G + E ++ +V + I G Sbjct: 121 DHLSVGSRVQVVKGDFCGVEG---ELASEANKTYVVIRIAG 158 >gi|154491588|ref|ZP_02031214.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC 43184] gi|160890142|ref|ZP_02071145.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492] gi|167764617|ref|ZP_02436738.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC 43183] gi|294775939|ref|ZP_06741435.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|154088389|gb|EDN87434.1| hypothetical protein PARMER_01199 [Parabacteroides merdae ATCC 43184] gi|156860530|gb|EDO53961.1| hypothetical protein BACUNI_02582 [Bacteroides uniformis ATCC 8492] gi|167697286|gb|EDS13865.1| hypothetical protein BACSTE_03007 [Bacteroides stercoris ATCC 43183] gi|294450077|gb|EFG18581.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 182 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 11/158 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ ++V K E I L + ++ + ER +K R+ F Sbjct: 10 HWFALKV---FYNKVFE-IEDILKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFR 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119 + +A+ + G P + D E+ M + Q Sbjct: 66 STVCRAL--EVQRQFTNKVILYTRQKGLKRLPLAIPDREMNIFMLVTSSGEQGMEYFGED 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + F+ GERV V DG F G++ + + R+ V V Sbjct: 124 NSKFQQGERVRVIDGKFKGAEGVICRI-RKNRRLVVTV 160 >gi|223935506|ref|ZP_03627423.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514] gi|223895916|gb|EEF62360.1| hypothetical protein Cflav_PD4995 [bacterium Ellin514] Length = 69 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 15/35 (42%) Query: 139 FNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 V K RV V + GR TPVE+ N V Sbjct: 1 MRASVLEFLPAKQRVRVLLDFLGRPTPVEVDRNSV 35 >gi|313146053|ref|ZP_07808246.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134820|gb|EFR52180.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 186 Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 12 ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62 Query: 62 PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + D + + T + + + + V A Sbjct: 63 HNLVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151 >gi|301310600|ref|ZP_07216539.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3] gi|300832174|gb|EFK62805.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 20_3] Length = 190 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 15/162 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW++++ Y N EK A + + + E IP V G K P Sbjct: 19 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70 Query: 64 YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117 + + A + + + + + + + ++ + + Sbjct: 71 LLFVHASHSQITEFKKRYNFLQFAMWEKSTGAEYITVPDDQMDSFIKIASHYEEDTVYYR 130 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVV 158 + + G RVC+ G F + G+ V RV V + Sbjct: 131 PEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172 >gi|284161993|ref|YP_003400616.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631] gi|284011990|gb|ADB57943.1| NusG antitermination factor [Archaeoglobus profundus DSM 5631] Length = 148 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 31/154 (20%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +++ V+ N E+ + + + L+ V I P + G Sbjct: 3 KFFAVKTTVNQERIVANLMELAVKKYNLE--VYSILAP-----------------KELRG 43 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YVL++A V I P G L P + E + Sbjct: 44 YVLVEAKDIQNVRRAITGIPHARGILSG---EIPFKEVEHFLTPKRAVEQ---------I 91 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G +V + GPF IV+ VD K+ + VE+ Sbjct: 92 KEGYKVEIIAGPFKGEQAIVRRVDPSKNEITVEL 125 >gi|91773883|ref|YP_566575.1| transcription antitermination protein NusG [Methanococcoides burtonii DSM 6242] gi|91712898|gb|ABE52825.1| LSU ribosomal protein L26e [Methanococcoides burtonii DSM 6242] Length = 154 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++V+ +N E+ + + LD + I P E GYV Sbjct: 8 FVVKTTANQERSVAAMLAQVAKKENLD--IRSIIAPDE-----------------LKGYV 48 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ + V I+ P + + + + Sbjct: 49 LLESSDSGAVEQAIQTVPHARTVVKGQSTIAEIEHFLTPK------------PTVTGIVE 96 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + V+ GPF VK VDE + VE+ Sbjct: 97 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128 >gi|301162527|emb|CBW22073.1| putative transcriptional regulator [Bacteroides fragilis 638R] Length = 212 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 38 ALNWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 88 Query: 62 PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + D + + T + + + + V A Sbjct: 89 HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 148 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 149 YFEPSELNIRKGIRVRITGGLFEGVEGEF 177 >gi|270296427|ref|ZP_06202627.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273831|gb|EFA19693.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 177 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ S L+ + +P+ V+S K R+ SE Sbjct: 6 KYWFAARTRDKQEFTVRKSLDRLKSEEHLE---LDYYLPTRFVISQLKYRRKRSEVPVIR 62 Query: 63 GYVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 V + T I + P + V D ++E M ++ Sbjct: 63 NLVFVHSTKQTACDISNIYNVPLFYMKDLATHSMLVVPDKQMEDFMFVMDLNPDSVSLDS 122 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 VG +V V G + G V ++ K+ V + + Sbjct: 123 EILTVGHKVKVIKGELSGIEGEV-AIEANKTYVVIRIK 159 >gi|167763480|ref|ZP_02435607.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC 43183] gi|167698774|gb|EDS15353.1| hypothetical protein BACSTE_01854 [Bacteroides stercoris ATCC 43183] Length = 183 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 19/162 (11%) Query: 5 WYIVQV-YSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ ++V YS ++ L +++ IP ++ G++V Sbjct: 13 WFAIRVSYSR-----ELALKAILDAENIEN-----FIPMRYEYIMKSGKRVRKLLPAIHN 62 Query: 64 YVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 V + + + P P + +S++ + + + Sbjct: 63 LVFVYSTRKRIDTLKDRLESSMPIRFIMNREHCRPVVIPESQMRSFILVAGNCDEAVLYV 122 Query: 121 VFFE----VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 E G++V ++ G F G + ++ RV V + Sbjct: 123 EPAELHLVKGQKVRITGGVFEGVIGEFVRIRHDR-RVVVNIE 163 >gi|325968428|ref|YP_004244620.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28] gi|323707631|gb|ADY01118.1| NusG antitermination factor [Vulcanisaeta moutnovskia 768-28] Length = 148 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 31/157 (19%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ R Y ++ N E + R GLD + Sbjct: 1 MSCRAYALRAVGNQEYNVAFMLKARAEHKGLD----------------KVRISAIVVLPT 44 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 G+V ++ M ++ G + + ++ V Sbjct: 45 LKGFVFVEGSMPYEIQDLATGIKHYRGMVRG---------------VMSIDEIVSSLAKP 89 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V VG+ V + PF + G V ++D ++ +V++E+ Sbjct: 90 VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLEL 126 >gi|289580819|ref|YP_003479285.1| NusG antitermination factor [Natrialba magadii ATCC 43099] gi|289530372|gb|ADD04723.1| NusG antitermination factor [Natrialba magadii ATCC 43099] Length = 145 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ ++ E+ + I R + P YV Sbjct: 4 FAVKTTASQERTVADMIINREEPE-----IHAALAPDS-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A + ++D P + + S V Sbjct: 42 MVEAEGNAVLNRVLEDIPHARSIVPGESDISEVEHFLSPK------------PDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 G+ V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 GDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|223992663|ref|XP_002286015.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977330|gb|EED95656.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 738 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 43/192 (22%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKV------N 55 P+WY++ + E + + + V R R Sbjct: 77 EPQWYLINCVAGIE------LDLLAQARLVTKDFPPTDVEKIVVPVERHLRSHGDKKKVV 130 Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT------------------------ 91 + +PGYV K +T+ VY T+++ ++GT Sbjct: 131 DVKVRYPGYVFCKIRLTEDVYETLQELELARSWMGTVNRKGHKKLPPAPLPLPDEEVKKF 190 Query: 92 ---GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 E D + + ++ +EVG+ V V G F +G V+ + + Sbjct: 191 KGLEEKQELFEDMFGDDFSGRTDSGEDLLAQYAGYEVGQMVKVLSGNFEGEDGTVRRLKD 250 Query: 149 EKSRVHVEVVIF 160 + + V +F Sbjct: 251 GQ----ICVRMF 258 >gi|229525603|ref|ZP_04415008.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426] gi|229339184|gb|EEO04201.1| transcriptional activator RfaH [Vibrio cholerae bv. albensis VL426] Length = 130 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 100 DSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 D + + + Q++ + + E G+ V V+ G FA I D + R + V + Sbjct: 55 DYHLIYQLKQLDCEQLKHATKQLPEKGQTVRVARGQFAGIEAIYLEPDGDT-RSIMLVKM 113 Query: 160 FGRVTPVELAYNQ 172 + P+ + Sbjct: 114 ISQQVPMSIENTD 126 >gi|265751851|ref|ZP_06087644.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236643|gb|EEZ22113.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 365 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 31 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 88 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V +P G+R+ +++G F V + R V V Sbjct: 148 PVYVPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190 >gi|288931718|ref|YP_003435778.1| NusG antitermination factor [Ferroglobus placidus DSM 10642] gi|288893966|gb|ADC65503.1| NusG antitermination factor [Ferroglobus placidus DSM 10642] Length = 151 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 32/157 (20%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ R+++V+ +N E+ ++ +++ + + Sbjct: 1 MS-RFFVVKTTANQERLVA-NMMSMVAKKN------------------KANVYSILAPKE 40 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 GYV+++A T+ + +I+ P V G + + + + ++ Sbjct: 41 LKGYVIVEAESTEDLVKSIRGVPHVKGLVRGEVSFNEIEHFLTPR------------KAA 88 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G V + GPF +VK VDE ++ + VE+ Sbjct: 89 EQIKEGYTVEIISGPFKGELAVVKRVDEARNEITVEL 125 >gi|154494124|ref|ZP_02033444.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC 43184] gi|154086384|gb|EDN85429.1| hypothetical protein PARMER_03469 [Parabacteroides merdae ATCC 43184] Length = 190 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 15/162 (9%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW++++ Y N EK A + + + E IP V G K P Sbjct: 19 RWFVMRAYKN-EKMAEDRLKDK-------EYGLEYFIPKHYAVRTYHGVKSKKLVPVIPS 70 Query: 64 YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP----- 117 + + A + + + + + + + ++ + + Sbjct: 71 LLFVHASHSQITEFKKRYNFLQFAMWEKSTGVEYITVPDDQMDSFIKIASHYEEDTVYYR 130 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE-EKSRVHVEVV 158 + + G RVC+ G F + G+ V RV V + Sbjct: 131 PEEIDLKRGMRVCIHGGKFDNVKGMFVRVQGKRNRRVVVLLE 172 >gi|255008596|ref|ZP_05280722.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313146327|ref|ZP_07808520.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135094|gb|EFR52454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 174 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ + L++ + + + ++ E Sbjct: 6 KYWFAARTRDKQEFAIRDSLEKLKTELALNYYLPTQFVIRQLKYRRKR-----VEVPVIK 60 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE--AAVQRPVSS 120 + I+A D + K ++ + + V + Sbjct: 61 NLIFIQATKQDACDISNKYNIQLFYMKDLLTRAMLIVPDKQMQDFIFVMDLDPNGVSFDN 120 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 VG RV V G F G + E ++ +V + I G Sbjct: 121 DHLSVGSRVQVVKGDFCGVEG---ELASEANKTYVVIRIAG 158 >gi|148642684|ref|YP_001273197.1| transcription antitermination protein NusG [Methanobrevibacter smithii ATCC 35061] gi|222445819|ref|ZP_03608334.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii DSM 2375] gi|261349636|ref|ZP_05975053.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374] gi|148551701|gb|ABQ86829.1| transcription antiterminator, NusG [Methanobrevibacter smithii ATCC 35061] gi|222435384|gb|EEE42549.1| hypothetical protein METSMIALI_01463 [Methanobrevibacter smithii DSM 2375] gi|288861594|gb|EFC93892.1| ribosomal protein L24 [Methanobrevibacter smithii DSM 2374] Length = 156 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%) Query: 6 YIVQVYSNCEKKAVESIGGR-LSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 Y ++ + E+ + + +S G+ ++ I +P GY Sbjct: 9 YALKTSAGQERNVARLLAHKAISVEGIG--ISAILVPES-----------------LKGY 49 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 +L++ + KV G E +T E + + + Sbjct: 50 ILVE---SSTKIDLRNPDLKVPHLRGVVEGKHGITFEEAKRFLKP-------EPIISSIQ 99 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V + GPF V +DE + V +E++ PV + +Q+ I Sbjct: 100 KGSVVELISGPFKGERAKVVRIDESREEVVLELIEAAVPIPVTVKADQIRII 151 >gi|116754720|ref|YP_843838.1| transcription antitermination protein NusG [Methanosaeta thermophila PT] gi|116666171|gb|ABK15198.1| LSU ribosomal protein L24A [Methanosaeta thermophila PT] Length = 153 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y+V+ +N E+ + + LD + I +P GYV Sbjct: 7 YVVKTTANQERAVANLVAQVARKEKLD--IRAILVPDV-----------------LKGYV 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + V I+ P + + + + + V Sbjct: 48 LVEASAPEIVEQAIQGVPHARSVIKGASSFAEIEHFLTPK------------PAVVGISE 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF VK VD K + VE+ Sbjct: 96 GAIVELISGPFKGEMARVKRVDIAKEEITVEL 127 >gi|330997477|ref|ZP_08321327.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila YIT 11841] gi|329570593|gb|EGG52314.1| hypothetical protein HMPREF9442_02426 [Paraprevotella xylaniphila YIT 11841] Length = 183 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK-AVMTDKVYHTIKDTPKVIGFL 89 L E+ P +SV+ GR+ E F + + + +T + Sbjct: 33 FKDLGMEVFTPMVWKLSVKHGRRCREEVPFIQDLLFVNGTRLAVDPIVEKYNTVQYRYLR 92 Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 G + P V +S+++ ++ V+++ P +G +V + GP + G ++ Sbjct: 93 GGYKIPMTVRESDMQRFIHAVQSSENPRYYTPEEISSDMIGRKVRIVGGPLDGYEGNLQK 152 Query: 146 VDEEK-SRVHVEV-VIFGRVTPVELAYNQ 172 + R+ VE+ + V+ Y Q Sbjct: 153 IQGAHVKRLFVELPNLLAAAVEVQPEYIQ 181 >gi|212540742|ref|XP_002150526.1| transcription initiation protein spt5 [Penicillium marneffei ATCC 18224] gi|210067825|gb|EEA21917.1| transcription initiation protein spt5 [Penicillium marneffei ATCC 18224] Length = 1021 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ E+ V +I R+ + P ++ + GYV I Sbjct: 213 VRCKPGKERDVVLNIQKRIEQR-----------PPGTRHGLKIISAFER-GKTMTGYVYI 260 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A +V + V V E+ ++ R S G+ Sbjct: 261 EARRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSEELNPGD 308 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ V+ V V + Sbjct: 309 WVRIKRGKYQGDLAQIEEVETNGLEVTVRL 338 >gi|288559740|ref|YP_003423226.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1] gi|288542450|gb|ADC46334.1| ribosomal protein L24 family [Methanobrevibacter ruminantium M1] Length = 163 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 21/171 (12%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ + E+ +G + + G+D + I +P GY+ Sbjct: 9 FALKTSAGQERTVARLLGMKADKPGVD--IKAIVVPES-----------------LKGYI 49 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++++ + + + G +G D + + +V+ ++ + Sbjct: 50 IVESATNLDMKNPDMKVRHLRGIVGA--KRDGTIDPSSQITLEEVKKFLKPQPIISSIQK 107 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G V + GPF V +DE + V +E++ PV + +Q+ I Sbjct: 108 GSIVELVSGPFKGEKSKVVRLDESREEVVLELIEAAVPIPVTVKADQIRII 158 >gi|14520220|ref|NP_125694.1| transcription antitermination protein NusG [Pyrococcus abyssi GE5] gi|5457435|emb|CAB48926.1| nusG transcription antitermination protein [Pyrococcus abyssi GE5] Length = 152 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ I ++ L + I PS+ GY+ Sbjct: 6 FAVRVTQGQEENTARLIYSKVRTYNLP--IYAILAPSK-----------------VKGYI 46 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A V I+ G P ++ E ++ + E Sbjct: 47 FIEAPEKSVVDEAIRGIRHAR---GVLPREIPFSEIEH---------FLEEKPAVSGLEP 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 95 GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 126 >gi|294643754|ref|ZP_06721552.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292640843|gb|EFF59063.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + GE+ V E + + ++S GE+V V GP G + N Sbjct: 1 MVMRGESSPAVIPDEQMARFRFMLDYSEEAICMNSSPLARGEKVRVVKGPLTGLVGELVN 60 Query: 146 VDEEKSRVHVEVVIFG 161 VD KS++ V + + G Sbjct: 61 VDG-KSKIAVRLNMLG 75 >gi|260773239|ref|ZP_05882155.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14] gi|260612378|gb|EEX37581.1| transcriptional activator RfaH [Vibrio metschnikovii CIP 69.14] Length = 137 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 43 ERVVSVRKGRKVNSERRFFPGYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDS 101 V + +G++ + FP Y+ + + T++ T V+ F+ G P ++++ Sbjct: 1 MEVEKILRGKRKKVQEPVFPSYIFVCFDYKQGPTFTTVRSTRGVVDFVRFGPEPKELSEA 60 Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 I + + EVG+ + V G F + + D E +R + V + Sbjct: 61 LITELKKLEYLPDHEQLG--LPEVGQEIEVKGGQFCGIRALYQEPDGE-ARSMMLVQMIN 117 Query: 162 RVTPVELAYNQV 173 + + + + Sbjct: 118 QPVVISIDNKDL 129 >gi|218130112|ref|ZP_03458916.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697] gi|217987616|gb|EEC53944.1| hypothetical protein BACEGG_01699 [Bacteroides eggerthii DSM 20697] Length = 171 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 12/173 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY V V N E + + EI +P + V G+++ + G Sbjct: 9 HWYAVYVRHNTEFRVESWLRE---------QGIEIYLPVQDVYREHAGKRIKVTKPVISG 59 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPVSSVF 122 + + + P + D ++ V+ + + + Sbjct: 60 MLFVCLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILMVNEP 119 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G V V+ G G + E K + V + G V + + V + Sbjct: 120 IAPGTMVTVAKGSMQGIRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 170 >gi|297527348|ref|YP_003669372.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710] gi|297256264|gb|ADI32473.1| NusG antitermination factor [Staphylothermus hellenicus DSM 12710] Length = 159 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 32/155 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLS---RSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 Y ++ E I R+ + D V I +P Sbjct: 10 YALRTTMGREIDVALVIESRIKDLKKQNRDPGVKAIFVP-----------------PGVR 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++ +Y I + V P V+ E+E + V+ Sbjct: 53 GYVFLETSRLASIYRLISEVKYVK-----SGQPIKVSLEEVERL-------VKPKPVIEM 100 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G+ V + GPF V ++D K+ V + + Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135 >gi|224538119|ref|ZP_03678658.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus DSM 14838] gi|224520247|gb|EEF89352.1| hypothetical protein BACCELL_03010 [Bacteroides cellulosilyticus DSM 14838] Length = 177 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 6/158 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ + GLD + +P+ VVS K R+ +E Sbjct: 6 KYWFAARTRDKQEFAVRKSLDKFKAEEGLD---LDYYLPTRTVVSQLKYRRKRTEVPVIR 62 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120 + I A + ++ + V ++ + S Sbjct: 63 NLIFIYATKQTACDLSNVYGVRLYYMKDLFTHSMLVVPNKQMEDFIFIMDLNPDGVSFDS 122 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 F +G +V V G F+ G + K+ V + + Sbjct: 123 EPFAIGNKVKVIKGDFSGIEGEIAT-QANKNYVVIRIK 159 >gi|237712159|ref|ZP_04542640.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229453480|gb|EEO59201.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 351 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 17 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 73 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 74 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 133 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 134 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 176 >gi|237726307|ref|ZP_04556788.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434833|gb|EEO44910.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 365 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 31 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 88 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190 >gi|150006413|ref|YP_001301157.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] gi|149934837|gb|ABR41535.1| putative transcriptional regulator UpxY-like protein [Bacteroides vulgatus ATCC 8482] Length = 365 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 31 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 88 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190 >gi|237719412|ref|ZP_04549893.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451272|gb|EEO57063.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 95 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + GE+ + E + + ++S GE+V V GP G + Sbjct: 1 MVMRGESSPTIIPDEQMARFRFMLDYSEEAICMNSAPLARGEKVRVVKGPLTGLVGELVT 60 Query: 146 VDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 VD +S++ V + + G ++ VEKI Sbjct: 61 VDG-RSKIAVRLNMLGCAC-ADMPVGYVEKI 89 >gi|254881672|ref|ZP_05254382.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254834465|gb|EET14774.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 365 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 31 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 88 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190 >gi|330997594|ref|ZP_08321440.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] gi|329570305|gb|EGG52040.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] Length = 247 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 31/167 (18%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+++ E++A + + R + +P R + + KG K E P Sbjct: 55 RWYVLRATYGREREAEDLLKKR---------GVLVYVPKRRTLKMVKGEKKKVEESLLPN 105 Query: 64 YVLIKAV------------------MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105 V + + + E+ + Sbjct: 106 LVFVFTDECTARRLVSFPLKSESRRKDKMPVSLHFMYDHTSLNENGLNDVVVIPHKEMVN 165 Query: 106 IMNQVEAAVQ----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + + + + ++V +++G F G V +D Sbjct: 166 FIRFTIGGSESIRAVSPADFRIKKDQQVVITEGDFKGVVGRVARIDR 212 >gi|294777067|ref|ZP_06742525.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294449125|gb|EFG17667.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 365 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 31 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 87 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 88 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 147 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 148 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 190 >gi|212691398|ref|ZP_03299526.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855] gi|212666008|gb|EEB26580.1| hypothetical protein BACDOR_00890 [Bacteroides dorei DSM 17855] Length = 383 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 4 RWYIVQ---VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 RWY++ + + R PS + V G+ VN++R Sbjct: 49 RWYVLSLPDCHRGG---VRGLQREQDRRIQAGEPSFGFFAPSYQEVRRIDGKFVNTQRPL 105 Query: 61 FPGYVLIKAVMTDKVYHTIK----------DTPKVIGFLGTGENPSPVTDSEIEHIMNQV 110 YV ++A D + K F + N + Sbjct: 106 LFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKREYFPYLSDAAMENLQWVARSYSNTL 165 Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + +P G+R+ +++G F V + R V V Sbjct: 166 PVYIPQPD---GLRKGDRIRITEGRFKGVEATVV-IQPGAGRKDVMV 208 >gi|317476604|ref|ZP_07935849.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|316907200|gb|EFV28909.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 167 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 13/177 (7%) Query: 1 MTPR-WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 M R WY V V N E + + EI +P + V G+++ + Sbjct: 1 MVHRHWYAVYVRHNTEFRVESWLRE---------QGIEIYLPVQDVYREHAGKRIKVTKP 51 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE-AAVQRPV 118 G + + + P + D ++ V+ + + Sbjct: 52 VISGMLFVCLSRPELTIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILM 111 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 + G V V+ G G + E K + V + G V + + V + Sbjct: 112 VNEPIAPGTMVTVAKGSMQGIRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 166 >gi|303285514|ref|XP_003062047.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456458|gb|EEH53759.1| predicted protein [Micromonas pusilla CCMP1545] Length = 468 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 + V +GPF F G + + V ++IFGR T V LA ++ Sbjct: 421 SIEVQEGPFKGFKGYITG-NNTNGSVEARLLIFGRETSVTLAADE 464 >gi|253563192|ref|ZP_04840649.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946968|gb|EES87250.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 186 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 16/149 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY +++ E ++ G L+ G+++ IP +++ R+V Sbjct: 12 ALNWYALRITYGREL----ALQGYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAV 62 Query: 62 PGYVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR--- 116 V +++ + D + + T + + + + V A Sbjct: 63 HNLVFVRSSRSCIDAIKESRSATLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLL 122 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 123 YFEPSELNIRKGTRVRITGGLFEGVEGEF 151 >gi|60681050|ref|YP_211194.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|60492484|emb|CAH07254.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] Length = 199 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 16/147 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY +++ E ++ L+ G+++ IP +++ R+V Sbjct: 27 NWYALRITYGREL----ALQEYLNSEGIEN-----FIPMHYEYTIKNERRVRKLVPAVHN 77 Query: 64 YVLIKAVMT--DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----- 116 V +++ + D + + T + + + + V A Sbjct: 78 LVFVRSSRSCIDAIKESKGTTLPIRYIMDREYHRPIIVPDSQMRNFMAVSANYDESLLYF 137 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIV 143 S + G RV ++ G F G Sbjct: 138 EPSELNIRKGTRVRITGGLFEGVEGEF 164 >gi|163782751|ref|ZP_02177747.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] gi|159881872|gb|EDP75380.1| transcription antitermination protein NusG [Hydrogenivirga sp. 128-5-R1-1] Length = 198 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 34/175 (19%) Query: 5 WYIVQVYSNCEKKAVESI------------------------------GGRLSRSGLDHL 34 WY+++V S E+ E + +S G++ Sbjct: 2 WYVLKVRSGKEEALKELLGRDFEVLYPSRKKLNVYVNGKKRYSFSLSKDKDISVRGVNIR 61 Query: 35 VTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94 + + + ++ + + E GY+ +K D + ++ V+GFL G Sbjct: 62 IRDGEVFTDNNHPDVRVVISDGESP-LRGYLFVKGRYEDIL-SKTENLLDVVGFLIMGGK 119 Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 +TD E+ + +VE + ++ E G RV V G + G+++ V E+ Sbjct: 120 VRTLTDEEVSDLQKRVEK--GERLKTLLPERGMRVKVVSGEWTGAEGVIEEVYED 172 >gi|124486398|ref|YP_001031014.1| 50S ribosomal protein L24A [Methanocorpusculum labreanum Z] gi|124363939|gb|ABN07747.1| LSU ribosomal protein L24A [Methanocorpusculum labreanum Z] Length = 158 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 59/152 (38%), Gaps = 28/152 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 YI++ S E+ ++I + + D +VT + +P + GYV Sbjct: 11 YILKTTSKHERTVADNIREAIENNMTDVVVTAVVVPED-----------------IKGYV 53 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++ ++ ++ + + + V +E + +++ + + + Sbjct: 54 FVES---------PEEHARIEELVESIAHARIVLKNET--SLEEIKHFLVPKPAVSGIDE 102 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF +VK VD K + VE+ Sbjct: 103 GTIVELIAGPFKGEKAVVKRVDHTKEEITVEL 134 >gi|255081736|ref|XP_002508090.1| predicted protein [Micromonas sp. RCC299] gi|226523366|gb|ACO69348.1| predicted protein [Micromonas sp. RCC299] Length = 591 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 128 RVCVSDGPFASFNGIVKNVDEEKSR--VHVEVVIFGRVTPVELAYNQVE 174 + V GPF F G V + D+ + V ++VIFGR T V L + E Sbjct: 541 SIEVVAGPFKGFKGYVTSADKPRGDGAVDAKLVIFGRETDVTLEAGEFE 589 >gi|317480379|ref|ZP_07939479.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316903457|gb|EFV25311.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 177 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 8/159 (5%) Query: 3 PRWYIVQVYSNCEKKAVESI--GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 W+ + E +S+ LD+ + + S+ ++ Sbjct: 6 KYWFAARTRDKQEFTVRKSLDRLKSEELLELDYYLPTRFVISQLKYRRKRSEVPVIRNLI 65 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 F T I + P + + V D ++E M ++ Sbjct: 66 FVH----STKQTACDISNIYNVPLFYMKDLSTHSMLVVPDKQMEDFMFVMDLNPDGVSLD 121 Query: 121 VFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 VG +V V G + G V ++ K+ V + + Sbjct: 122 SEILTVGHKVKVIKGELSGIEGEV-AIEANKTYVVIRIK 159 >gi|242800831|ref|XP_002483662.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC 10500] gi|218717007|gb|EED16428.1| transcription initiation protein spt5 [Talaromyces stipitatus ATCC 10500] Length = 1024 Score = 43.9 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ E+ V +I R+ + P ++ + GYV I Sbjct: 214 VRCKPGKERDVVLNIQKRIEQR-----------PPGTRHGLKIISAFER-GKTMTGYVYI 261 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 ++ +V + V V E+ ++ R S G+ Sbjct: 262 ESRRQAEVMEALDGLLDVY----PKTKMVLVPVKEMPDLL--------RVKKSAELNPGD 309 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ V+ V V + Sbjct: 310 WVRIKRGKYQGDLAQIEEVETNGLEVTVRL 339 >gi|14589965|ref|NP_142025.1| transcription antitermination protein NusG [Pyrococcus horikoshii OT3] gi|3256387|dbj|BAA29070.1| 155aa long hypothetical transcription termination-antitermination factor [Pyrococcus horikoshii OT3] Length = 155 Score = 43.9 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ I ++ L + I PS+ GY+ Sbjct: 9 FAVRVTQGQEENTARLIYSKVKTYNLP--IYAILAPSK-----------------VKGYI 49 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A V I+ G L P ++ E ++ + E Sbjct: 50 FIEAPEKSVVDEAIRGIRHARGVLPG---EIPFSEIEH---------FLEEKPAVSGLEP 97 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 98 GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 129 >gi|126465988|ref|YP_001041097.1| 50S ribosomal protein L24A [Staphylothermus marinus F1] gi|126014811|gb|ABN70189.1| LSU ribosomal protein L24A [Staphylothermus marinus F1] Length = 159 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 32/155 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRL---SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 Y ++ E I R+ + D V + +P Sbjct: 10 YAIRTTMGREIDVALVIESRIMDLVKQNRDPGVKAVFVP-----------------PGVR 52 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++ +Y I + V P V+ E+ + V+ Sbjct: 53 GYVFLETSRLASIYRLISELKYVK-----SGQPIKVSLDEVGRL-------VKPKPVIEM 100 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G+ V + GPF V ++D K+ V + + Sbjct: 101 IKEGDIVEIVRGPFRGMKAQVISIDRNKNMVVLSI 135 >gi|294646634|ref|ZP_06724264.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292638024|gb|EFF56412.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 99 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + GE+ V E + + ++ GE+V V GP + G + Sbjct: 1 MVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60 Query: 146 VDEEKSRVHVEVVIFG 161 V KS++ V + + G Sbjct: 61 V-GGKSKIAVRLNMLG 75 >gi|329963112|ref|ZP_08300892.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328529153|gb|EGF56083.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 204 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 15/152 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ Y+ E K + + R + H + + R+G+ Sbjct: 33 WYALRTYNCQEIKISDFLTDR----QMVHFIPMTYVER----KNREGKVKRVLVPVVHNL 84 Query: 65 VLIKAVMTDKVY-HTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRP---- 117 + ++ + K + + I L + + DS++ + + Sbjct: 85 IFLRKDKSQKEILSILGECMTPISVLRKEGSGDCYEIPDSQMVEFRALCDPDFEDKQFIT 144 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + G+ V + G FA G + V+ Sbjct: 145 HDEADAKPGKEVRIVHGQFAGMTGKLHRVNNN 176 >gi|15789631|ref|NP_279455.1| transcription antitermination protein NusG [Halobacterium sp. NRC-1] gi|169235344|ref|YP_001688544.1| transcription antitermination protein NusG [Halobacterium salinarum R1] gi|10579991|gb|AAG18935.1| transcription termination-antitermination factor [Halobacterium sp. NRC-1] gi|167726410|emb|CAP13193.1| transcription antitermination protein homolog [Halobacterium salinarum R1] Length = 145 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 34/169 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ ++ E+ I R + + + P YV Sbjct: 4 FAVKTTASQEQTVASMIANRE-----EDTIHAVLAPDA-----------------LTSYV 41 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A T + T+ + P + S V Sbjct: 42 MVEAEDTAAIERTMDEIPHARSLVPGESGISEVEHFLSPK------------PDVEGIAE 89 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + V + GPF V+ +DE K +V VE+ PV + +Q+ Sbjct: 90 NDIVELIAGPFKGEKAQVQRIDEGKDQVTVELYEATVPIPVTVRGDQIR 138 >gi|162448289|ref|YP_001610656.1| hypothetical protein sce0020 [Sorangium cellulosum 'So ce 56'] gi|161158871|emb|CAN90176.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 473 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 P E G RV V GPF G+V +D V + + T +EL +E Sbjct: 393 DPAKGGVLEKGSRVRVRRGPFGDKIGVVSELDGRGG-ARVLLGLL--STRLELD--DLEL 447 Query: 176 IV 177 +V Sbjct: 448 VV 449 >gi|118575540|ref|YP_875283.1| ribosomal protein L24A [Cenarchaeum symbiosum A] gi|118194061|gb|ABK76979.1| ribosomal protein L24A [Cenarchaeum symbiosum A] Length = 131 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +E + + + E + V ++ GPF + +D EK V ++ PV + Sbjct: 63 IEGYLVKKSTVTSLEKDQTVEITGGPFKGMKASITRIDHEKEEATVVLLDASYQLPVTVD 122 Query: 170 --YNQV 173 Y QV Sbjct: 123 ANYLQV 128 >gi|237708360|ref|ZP_04538841.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457581|gb|EEO63302.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 183 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 11/158 (6%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ ++V K E I L + ++ + ER +K R+ F Sbjct: 10 HWFALKV---FYNKVFE-IEDILKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFR 65 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS---- 119 + +A+ + G + P + + E++ M + Q Sbjct: 66 STVCRAL--EVQRQFTNKVILYTRQEGLRKLPLAIPEREMDVFMLVTSSGEQGMEYFGED 123 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + F GERV V DG F G++ + + SR+ V V Sbjct: 124 NPKFYKGERVRVIDGKFKGAEGVICRI-RKNSRLVVTV 160 >gi|255007990|ref|ZP_05280116.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313145706|ref|ZP_07807899.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313134473|gb|EFR51833.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 174 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY+ S E++ + + R R+ +P ++ +GR + Sbjct: 16 HWYLAFTASRAEQRVKQELDQRKVRN---------YLPLRKITYQWQGRPKETLLPQITR 66 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF- 122 +LI+A +D + + G + + + + + V + Sbjct: 67 CILIRASESDVL-----QLSGIQGLIIPQNIWEYRIPEWQVNSYQLLFSHIDTAVEWIPD 121 Query: 123 -FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG--RVTPVELAYNQVEKI 176 E+ V V+ G G + + E R+ + G R+T + +E++ Sbjct: 122 CPELAPMVRVTGGSLNGLVGELDTSETE-MRIMIRFHAMGCFRIT---IPGEWIERL 174 >gi|295087699|emb|CBK69222.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 99 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + GE+ V E + ++ GE+V V GP + G + Sbjct: 1 MVMRGESTPAVIPDEQMARFRFMLDYSDEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60 Query: 146 VDEEKSRVHVEVVIFG 161 V KS++ V + + G Sbjct: 61 V-GGKSKIAVRLNMLG 75 >gi|319902061|ref|YP_004161789.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] gi|319417092|gb|ADV44203.1| NGN domain-containing protein [Bacteroides helcogenes P 36-108] Length = 177 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 8/159 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E S+ + LD + +P+ V++ K R+ SE Sbjct: 6 KYWFAARTRDKQEFAIRNSLEKLKAEENLD---IDCYLPTRSVITQLKYRRKRSEVPVIR 62 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQRPVSS 120 + + A + ++ + V ++ V + Sbjct: 63 NLIFVHATKQIACDISNVYGVQLFYMKDLFSHSMLVVPNKQMEDFMFVMDLNPNGVSFDN 122 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 VG +V V G F G V E ++ +V + I Sbjct: 123 DSLAVGNKVKVIKGDFCGIEG---EVATEANKTYVIIRI 158 >gi|41615322|ref|NP_963820.1| transcription antitermination protein NusG [Nanoarchaeum equitans Kin4-M] gi|40069046|gb|AAR39381.1| NEQ540 [Nanoarchaeum equitans Kin4-M] Length = 175 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 45/178 (25%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 +IV+ E+ + I + + G GY+ Sbjct: 18 WIVKTAGGKEEIVADLIEAKAKKLG-------------------ANVYSIVIAPGIKGYI 58 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A D V + D V L P V D E ++ V Sbjct: 59 FVEADKYDTVNELVHDIKHVRKVLP---KPIEVKDIEK---------FIKAEPLVTKVNV 106 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT-------PVELAYNQVEKI 176 G+ V V GP G V +E V + T PV ++ + ++ + Sbjct: 107 GDIVEVIAGPLKGSRGKVVAFNENTGEVTI-------ETLDSVIPLPVTVSIHDIKLV 157 >gi|254523728|ref|ZP_05135783.1| putative DNA methylase [Stenotrophomonas sp. SKA14] gi|219721319|gb|EED39844.1| putative DNA methylase [Stenotrophomonas sp. SKA14] Length = 4560 Score = 43.5 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 2/141 (1%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 ++I R +R+ + ++ + + R+ F GYV + D + Sbjct: 886 AKTITRRGARNTKEEGFSKPEVVEREIKRRGLDPADYEVRKHFGGYVGVLKDAPDIAIKS 945 Query: 79 IKDTP-KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA 137 T +EI ++Q A ++ G+ V G Sbjct: 946 QTPTAGNEGRGAQPTSKGDGAARTEIHRKIDQEFAENLEAIAEEGIGAGDTVKFRSGD-E 1004 Query: 138 SFNGIVKNVDEEKSRVHVEVV 158 + V +D E+ + V + Sbjct: 1005 TLAAEVMEIDNEQGTLQVRLE 1025 >gi|237711903|ref|ZP_04542384.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|317474958|ref|ZP_07934227.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA] gi|229454598|gb|EEO60319.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|316908861|gb|EFV30546.1| glycogen synthase [Bacteroides eggerthii 1_2_48FAA] Length = 182 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++ + + L + E+ P + +SV G++ E F Sbjct: 12 WYVMR-------DLKRANAKLPAYKQLLNEHFEVFTPMKEQLSVHGGKRTREEVPFIQDL 64 Query: 65 VLIK--AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPV 118 + + D G +NP V D+++E ++ V P Sbjct: 65 LFVHDTQEAIDPFVEKYPTIQYRFQKGGGYKNPMTVADADMERFIHAVSVSKNPKYYLPG 124 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEV-VIFGRVTPVELAYNQVE 174 G + + GP + G + V K R+ VE+ F VE+ + Sbjct: 125 ELTPSMCGRHIRIVGGPLDGYEGKLLTVRGSKTKRLLVELPEFF--SVGVEVNPEYIR 180 >gi|145348039|ref|XP_001418465.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578694|gb|ABO96758.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 262 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQ 172 +RV V GPF F G + +++ V + IFGR T V LA ++ Sbjct: 214 DRVEVHTGPFKGFKGHIVARNDD-GSVEATLAIFGRDTNVSLAADE 258 >gi|73668161|ref|YP_304176.1| transcription antitermination protein NusG [Methanosarcina barkeri str. Fusaro] gi|72395323|gb|AAZ69596.1| LSU ribosomal protein L24A [Methanosarcina barkeri str. Fusaro] Length = 152 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++++ +N E+ ++ + LD + I P E GYV Sbjct: 8 FVIKTTANQERSVATALARVSKKEKLD--IRAILAPDE-----------------LKGYV 48 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + V I+ P + + + + + + Sbjct: 49 LVEAPKSGIVELAIQTIPHARALVKGSSSIAEIEHFLKPK------------PTVTGIKE 96 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + V+ GPF VK VDE + VE+ Sbjct: 97 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128 >gi|294494867|ref|YP_003541360.1| 50S ribosomal protein L24A [Methanohalophilus mahii DSM 5219] gi|292665866|gb|ADE35715.1| LSU ribosomal protein L24A [Methanohalophilus mahii DSM 5219] Length = 152 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++++ +N E+ + + LD + + P E GYV Sbjct: 8 FVIKTTANQERSVAGMLAKVAKKENLD--IRALLAPDE-----------------LKGYV 48 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L ++ +V I+ P + + + + Sbjct: 49 LAESSNPGEVEQAIQTVPHARALVKGQSSMEEIMHFLTPK------------PTVTGITE 96 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + V+ GPF VK VDE + VE+ Sbjct: 97 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 128 >gi|240102542|ref|YP_002958851.1| transcription antitermination protein NusG [Thermococcus gammatolerans EJ3] gi|239910096|gb|ACS32987.1| Ribosomal protein L26E (rpl26E) [Thermococcus gammatolerans EJ3] Length = 152 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ + I ++ L V I PS+ GY+ Sbjct: 7 FTVRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYI 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V IK G L +E ++ + FE Sbjct: 48 FVEAPSKSAVDEAIKGIRHARGTLPGEVKFEE------------IEHFLEEKPAVSGFEP 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 96 GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 127 >gi|320101303|ref|YP_004176895.1| 50S ribosomal protein L24A [Desulfurococcus mucosus DSM 2162] gi|319753655|gb|ADV65413.1| LSU ribosomal protein L24A [Desulfurococcus mucosus DSM 2162] Length = 163 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 32/174 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 Y V+ E I R+ G + V I IP Sbjct: 15 YAVKTTVGRELDVAFIISMRVEEKKAKGEETSVRSIIIP-----------------PDIK 57 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV ++ ++Y + D V P + E+E ++ + Sbjct: 58 GYVFLEVEKLSELYRVVSDIRYVK-----AGRPMKIAYEELEKLLKPKPVIEE------- 105 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VG+ V ++ GPF + VD K+ + V ++ P+ + + V+K+ Sbjct: 106 LDVGDIVEITRGPFKGMRAKITGVDRNKNMLTVNILEATFTIPITIPGDYVKKM 159 >gi|307594170|ref|YP_003900487.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429] gi|307549371|gb|ADN49436.1| NusG antitermination factor [Vulcanisaeta distributa DSM 14429] Length = 156 Score = 43.1 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 31/157 (19%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ R Y ++ N E + R GLD + Sbjct: 8 MSCRVYALRAVGNQEYNVAFMLKARTEHKGLD----------------KVKVTAIVVLPA 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 G+V ++ + ++ G + + V+ V Sbjct: 52 LKGFVFVEGSLPYEIQDLATGIKHYRGMVRG---------------VMSVDEIVSSLAKP 96 Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V VG+ V + PF + G V ++D ++ +V++E+ Sbjct: 97 VEINVGDVVEIIVEPFKGYRGKVVDIDRQRGQVYLEL 133 >gi|294644643|ref|ZP_06722394.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292640015|gb|EFF58282.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 99 Score = 43.1 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQR--PVSSVFFEVGERVCVSDGPFASFNGIVKN 145 + GE+ V E + + ++ GE+V V GP + G + Sbjct: 1 MVMRGESTPAVIPDEQMARFRFMLDYSEEAVCMNDTPLARGEKVRVIKGPLSGLVGELVT 60 Query: 146 VDEEKSRVHVEVVIFG 161 V KS++ V + + G Sbjct: 61 V-GGKSKIAVRLNMLG 75 >gi|257076134|ref|ZP_05570495.1| transcription antitermination protein NusG [Ferroplasma acidarmanus fer1] Length = 298 Score = 43.1 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 20/151 (13%) Query: 7 IVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVL 66 I + E + R + + R GY Sbjct: 146 IAKCTIGKELDIAIDLSNHAERDREER--------MAMNKNARNEVMAVMSPYEIKGYFF 197 Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 I+ + D+V K GF+ + S + + E+G Sbjct: 198 IETMHADRVDVLSKSIRGFRGFVSGDIDISEIEKYLTPK------------PAVTGLEMG 245 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + +GPF + +D K V V++ Sbjct: 246 SLVEIVEGPFKGERAKITAIDAAKEEVTVQL 276 >gi|212694234|ref|ZP_03302362.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855] gi|212663221|gb|EEB23795.1| hypothetical protein BACDOR_03760 [Bacteroides dorei DSM 17855] Length = 190 Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 22/167 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++VY N E A + + + E IP ++V+ KG+KV Sbjct: 12 WYVMRVYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63 Query: 65 VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115 V + A D ++ D V G V D ++ + + + A + Sbjct: 64 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123 Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + + E G+RV V GPF G V +++ R V + Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170 >gi|329965206|ref|ZP_08302137.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328523569|gb|EGF50666.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 206 Score = 43.1 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++ Y N E A + + + E IP ++V+ KG+KV Sbjct: 28 WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 79 Query: 65 VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115 V + A D ++ D V G V D ++ + + + A + Sbjct: 80 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 139 Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + + E G+RV V GPF G V +++ R V + Sbjct: 140 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 186 >gi|262384300|ref|ZP_06077435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294003|gb|EEY81936.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 179 Score = 43.1 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 5/147 (3%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHT 78 + +R LD E IP +G+K + + A+ + Sbjct: 3 ATYRRSKNARELLDKEKIECFIPMRYETREIRGKKKRELTPVVQNLMFVHAIPSVIQEVK 62 Query: 79 IKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGERVCVSDG 134 + V + ++ + ++ V G RV ++ G Sbjct: 63 SRVKYLQYIVNVRSGEKIIVPEDQMRRFIAVTGTYDEQLLWFKPEEVNLAKGTRVRITGG 122 Query: 135 PFASFNGIVKNVDEEKSRVHVEVVIFG 161 F G+ V + R V V I G Sbjct: 123 VFEGEEGVFVKVRGARER-RVVVEIQG 148 >gi|254171978|ref|ZP_04878654.1| ribosomal protein L24 [Thermococcus sp. AM4] gi|214033874|gb|EEB74700.1| ribosomal protein L24 [Thermococcus sp. AM4] Length = 152 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ + I ++ L V I PS+ GY+ Sbjct: 7 FTVRVTVGQEETTAKLIYSKVKTYNLP--VYAILAPSK-----------------VKGYI 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V IK G L +E ++ + FE Sbjct: 48 FVEAPSKSAVDEAIKGIRHARGTLPGEVRFEE------------IEHFLEEKPAVSGFEP 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 96 GDIVELISGPFKGEKAKVVRVDESKDEIVVEL 127 >gi|20093062|ref|NP_619137.1| transcription antitermination protein NusG [Methanosarcina acetivorans C2A] gi|19918386|gb|AAM07617.1| transcription antitermination protein NusG [Methanosarcina acetivorans C2A] Length = 156 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++++ +N E+ ++ + LD + I P E GYV Sbjct: 12 FVIKTTANQERSVAMALARIAKKEKLD--IRAILAPDE-----------------LKGYV 52 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + V I+ P + + + + + Sbjct: 53 LVEAPKSGIVELAIQTIPHARALVKGSSSIAEIEHFLKPK------------PIVTGIKE 100 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + V+ GPF VK VDE + VE+ Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132 >gi|48477517|ref|YP_023223.1| transcription antitermination protein NusG [Picrophilus torridus DSM 9790] gi|48430165|gb|AAT43030.1| hypothetical transcription antitermination protein NusG [Picrophilus torridus DSM 9790] Length = 285 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 1/126 (0%) Query: 52 RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 ++ + +L + + +T V + Sbjct: 157 KERLISNKNARNEILSIMSPYEIKGYIFIETMHVDRVEYLARTLRNFKGIISGTVSMDEI 216 Query: 112 AAVQRPVSSVFF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAY 170 P +V +G+ V + GPF + ++D K V V++ PV + Sbjct: 217 EHYLTPKPAVSGLSLGDLVEIVGGPFKGERAKIMSIDASKEEVTVQLTESMVPIPVTVKA 276 Query: 171 NQVEKI 176 + + Sbjct: 277 ESIRPL 282 >gi|317480623|ref|ZP_07939711.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316903249|gb|EFV25115.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 190 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY+++ Y N E A + + + E IP ++V+ KG+KV Sbjct: 12 WYVMRAYKN-ENTAEDRLSN-------ETYGLEYFIPKQKVLRTVKGKKVFFMVPVIHSL 63 Query: 65 VLIKAVM---TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ------ 115 V + A D ++ D V G V D ++ + + + A + Sbjct: 64 VFVHASHQKIVDFKHNYYYDLQFVTWKSGGELVYLTVPDEDMTNFIKVCKQADEEVHFYK 123 Query: 116 -----RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + + E G+RV V GPF G V +++ R V + Sbjct: 124 ISEINKEKDKINIEKGKRVRVHGGPFDQVEGYFIKVAKKRGRQLVVI 170 >gi|332158453|ref|YP_004423732.1| transcription antitermination protein NusG [Pyrococcus sp. NA2] gi|331033916|gb|AEC51728.1| transcription antitermination protein NusG [Pyrococcus sp. NA2] Length = 152 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ I ++ L V I PS+ GY+ Sbjct: 6 FAVRVTQGQEENTARLIYSKVRTYNLP--VYAILAPSK-----------------VKGYI 46 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V I+ G P ++ E ++ + E Sbjct: 47 FVEAPEKSVVDEAIRGIRHAR---GVLPREVPFSEIEH---------FLEEKPAVSGLEP 94 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 95 GDIVELISGPFKGEKAKVVRVDEAKDEIVVEL 126 >gi|153930622|ref|YP_001393253.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758] gi|152958166|gb|ABS45629.1| transcriptional activator [Yersinia pseudotuberculosis IP 31758] Length = 159 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 16/133 (12%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SERRF 60 WY++ + + GLD L PS +V VR Sbjct: 2 KNWYLLSYKYGQVNRV---------QFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPM 52 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 FP Y+ ++ + TI T V F+ G P P+ S I +MN+ E + QR Sbjct: 53 FPTYLFVEFDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMNRSECSSQR---- 108 Query: 121 VFFEVGERVCVSD 133 E+ E + D Sbjct: 109 -NEEIDEIATIPD 120 >gi|317479098|ref|ZP_07938239.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] gi|316904754|gb|EFV26567.1| transcription termination factor nusG [Bacteroides sp. 4_1_36] Length = 180 Score = 42.7 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 16/147 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY V+V + E + + E IP VRK R++ Sbjct: 6 EMHWYAVRVTYSRELFFKDYLDAE---------GIENYIPMRYEYVVRKERRLRKLVPAV 56 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V +++ M + + P P + DS++ + Q Sbjct: 57 HNLVFVRSTRERMDEIKNKPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141 + + G RV ++ G F G Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143 >gi|53712721|ref|YP_098713.1| putative transcriptional regulatory protein UpxY-like protein [Bacteroides fragilis YCH46] gi|60680881|ref|YP_211025.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253563291|ref|ZP_04840748.1| UpaY [Bacteroides sp. 3_2_5] gi|265762815|ref|ZP_06091383.1| UpaY [Bacteroides sp. 2_1_16] gi|14578623|gb|AAK68912.1|AF189282_2 UpaY [Bacteroides fragilis] gi|52215586|dbj|BAD48179.1| putative transcriptional regulatory protein UpxY homolog [Bacteroides fragilis YCH46] gi|60492315|emb|CAH07080.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251947067|gb|EES87349.1| UpaY [Bacteroides sp. 3_2_5] gi|263255423|gb|EEZ26769.1| UpaY [Bacteroides sp. 2_1_16] Length = 172 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M+ + W+ + + E ++ L E +P++ V+ K R+ E Sbjct: 1 MSEQQEYWFAARTKKDQEFSVRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115 + ++ T D + + + ++ V Sbjct: 52 VPVIKNLIFVRTTKDRAWSITKDDHVPLYYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + VG +V V G F G + ++ +R +V + I G Sbjct: 112 VTFDDLPLTVGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154 >gi|160890364|ref|ZP_02071367.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492] gi|156860096|gb|EDO53527.1| hypothetical protein BACUNI_02805 [Bacteroides uniformis ATCC 8492] Length = 183 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY V+V + E E + +G+++ + P VRK R++ Sbjct: 6 EMHWYAVRVTYSRELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPAV 56 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V +++ M + + P P + DS++ + Q Sbjct: 57 HNLVFVRSTRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141 + + G RV ++ G F G Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143 >gi|327401544|ref|YP_004342383.1| NusG antitermination factor [Archaeoglobus veneficus SNP6] gi|327317052|gb|AEA47668.1| NusG antitermination factor [Archaeoglobus veneficus SNP6] Length = 151 Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 31/154 (20%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 R++ ++ +N E+ + + + L V I P + G Sbjct: 3 RFFAIKTTANQERVVANLMEMAVKKYELG--VYSILAP-----------------KELKG 43 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 YV+++A + + I+ P V G + N S + ++ Sbjct: 44 YVIVEAEKMEDLLKAIRGLPHVKGVVKGEVNFSEIEHFLTPR------------KAAEQI 91 Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + G V + GPF +VK VDE K+ + VE+ Sbjct: 92 KEGFTVEIISGPFKGELAVVKRVDEAKNEITVEL 125 >gi|270296925|ref|ZP_06203124.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272912|gb|EFA18775.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 180 Score = 42.4 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 WY V+V + E E + +G+++ + P VRK R++ Sbjct: 6 EMHWYAVRVTYSRELFFKEYLDA----AGIENYI-----PMRYEYVVRKERRLRKLVPAV 56 Query: 62 PGYVLIKAV---MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 V +++ M + + P P + DS++ + Q Sbjct: 57 HNLVFVRSTRERMDEIKNEPGMNIPIRYIMDRETRQPIVIPDSQMRSFIAVSGTYDQAVL 116 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNG 141 + + G RV ++ G F G Sbjct: 117 YLEPTELNLSQGTRVRITGGIFEGVEG 143 >gi|212223324|ref|YP_002306560.1| transcription antitermination protein NusG [Thermococcus onnurineus NA1] gi|212008281|gb|ACJ15663.1| transcription antitermination protein [Thermococcus onnurineus NA1] Length = 152 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ + I ++ L V I PS+ GY+ Sbjct: 7 FTVRVTVGQEETTAKLIYSKIKTYNLP--VYAILAPSK-----------------VKGYI 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V IK G L +E ++ + FE Sbjct: 48 FVEAPSKSAVDEAIKGIRHAKGTLPGEVRFEE------------IEHFLEEKPAVSGFEP 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 96 GDIVELIAGPFKGEKAKVVRVDEAKDEIVVEL 127 >gi|301162427|emb|CBW21972.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 172 Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 17/166 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M+ + W+ + + E ++ L E +P++ V+ K R+ E Sbjct: 1 MSEQQEYWFAARTKKDQEFSVRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115 + ++ T D + + + ++ V Sbjct: 52 VPVIKNLIFVRTTKDRAWSITKDDHVPLYYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + +G +V V G F G + ++ +R +V + I G Sbjct: 112 VTFDDLPLTIGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154 >gi|315229956|ref|YP_004070392.1| NusG-like transcription antitermination protein [Thermococcus barophilus MP] gi|315182984|gb|ADT83169.1| NusG-like transcription antitermination protein [Thermococcus barophilus MP] Length = 152 Score = 42.4 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+V E+ + + L + I PS+ GY+ Sbjct: 7 FAVRVTVGQEETTARLVYSKAKTYNLP--IYAILTPSK-----------------VKGYI 47 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A V I+ GT ++ E ++ + FE Sbjct: 48 FIEAPSKSAVDEAIRGIRHAR---GTLPGEVAFSEIEH---------FLEEKPAVSGFEP 95 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V + GPF V VDE K + VE+ Sbjct: 96 GDIVELIAGPFKGEKAKVIRVDEAKDEIVVEL 127 >gi|57641354|ref|YP_183832.1| transcription antitermination protein NusG [Thermococcus kodakarensis KOD1] gi|57159678|dbj|BAD85608.1| transcription antitermination protein [Thermococcus kodakarensis KOD1] Length = 152 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 +E ++ + FE G+ V + GPF V VDE K + VE+ Sbjct: 80 IEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 127 >gi|21227112|ref|NP_633034.1| transcription antitermination protein NusG [Methanosarcina mazei Go1] gi|20905441|gb|AAM30706.1| putative transcription antitermination protein nusG [Methanosarcina mazei Go1] Length = 156 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++++ +N E+ ++ + LD + I P E GYV Sbjct: 12 FVIKTTANQERSVAMTLARVAKKEKLD--IRAILAPDE-----------------LKGYV 52 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + V I+ P + + S + + Sbjct: 53 LVEAPKSGIVELAIQTIPHARALVKGSSSISEIEHFLKPK------------PVVTGIKE 100 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + V+ GPF VK VDE + VE+ Sbjct: 101 GAIIEVTSGPFKGEKARVKRVDEGHEEITVEL 132 >gi|126178361|ref|YP_001046326.1| ribosomal protein L24 [Methanoculleus marisnigri JR1] gi|125861155|gb|ABN56344.1| LSU ribosomal protein L24A [Methanoculleus marisnigri JR1] Length = 157 Score = 42.0 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 29/152 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ + E+ ++I +SR D V + +P E GYV Sbjct: 9 YAIKTTAKQERTVADNIEK-VSREQKDIHVMAVMVPEE-----------------LKGYV 50 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ + + + + G +++VE + Sbjct: 51 LVESPDSIARIEQLVELIPHARAVVQGSTA-----------LSEVEHFLVPKPVVSGITE 99 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF +VK +D K + VE+ Sbjct: 100 GTIVEIIAGPFKGEKAVVKRIDTGKEEITVEL 131 >gi|121707137|ref|XP_001271743.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1] gi|119399891|gb|EAW10317.1| transcription initiation protein spt5 [Aspergillus clavatus NRRL 1] Length = 1045 Score = 42.0 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V SI R+ P ++ GY+ + Sbjct: 237 VRCKAGKEREVVFSIQKRIEER-----------PPGSRKPMKIISAFERGG-AMSGYIYV 284 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 285 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 332 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ VD V V + Sbjct: 333 WVRIKRGKYQGDLAQIEEVDTNGLEVTVRL 362 >gi|220915023|ref|YP_002490331.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219952774|gb|ACL63164.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 118 Score = 42.0 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 56 SERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 R FPGY + ++ + I P V + TGE P+ + + ++ + Sbjct: 1 MRRPVFPGYAFVGKRP-EQSWRDILRVPGVRALVTTGEAPTELPPW-MMKMLIAADEMAA 58 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 VG++V + D + G V E R+ V + FG+ + + +++ Sbjct: 59 YDRPRPQLAVGDKVQIRDELWEGLIGEVMRA-PEGRRIAVLLKAFGKKHVLSVDVDRL 115 >gi|88601955|ref|YP_502133.1| NusG antitermination factor [Methanospirillum hungatei JF-1] gi|88187417|gb|ABD40414.1| LSU ribosomal protein L24A [Methanospirillum hungatei JF-1] Length = 160 Score = 42.0 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 28/152 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ + E+ ++I + + D V + +P E GYV Sbjct: 11 FAVKTTNRAERSVADNIDKAVRDADNDIRVMSVIVPDE-----------------LKGYV 53 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++ + + + G + +V + + + Sbjct: 54 LVETDEPIARVQELMEHVPSARTVLPG-----------VTTLEEVGHYLIPKPAVSGIDE 102 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + +GPF +VK VD K + VE+ Sbjct: 103 GTIVELINGPFKGEKAVVKRVDASKEEITVEL 134 >gi|262165225|ref|ZP_06032962.1| transcriptional activator RfaH [Vibrio mimicus VM223] gi|262024941|gb|EEY43609.1| transcriptional activator RfaH [Vibrio mimicus VM223] Length = 69 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 M Q++ + + E G+ V V+ G FA I + D + R + V + + P+ Sbjct: 1 MKQLDCEQLKGSARQLPEKGQTVRVARGQFAGIEAIYQEPDGDT-RSIMLVKMISQQVPM 59 Query: 167 ELAYNQ 172 + Sbjct: 60 SIENTD 65 >gi|301115069|ref|XP_002999304.1| transcription elongation factor SPT5, putative [Phytophthora infestans T30-4] gi|262111398|gb|EEY69450.1| transcription elongation factor SPT5, putative [Phytophthora infestans T30-4] Length = 1142 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 L ++D E++ + VGE V V +GPF+ +G VK+ Sbjct: 549 FTVLCQNGQSRNISDQEVQRKIVSSRTTAALDKKHNHVSVGEMVNVVEGPFSGHSGTVKH 608 Query: 146 VDE-----EKSRVH 154 + +RV Sbjct: 609 IYRTYLFIHNNRVT 622 Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 4/103 (3%) Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR- 116 + + Y+ I + + G+ +++S + + + QR Sbjct: 607 KHIYRTYLFIHNNRVTTNSGMFVTRARGVILSGSKARSDMISNSTVPRMDAGMRQQNQRG 666 Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 +G+ V V G + + GIV VDE +V VE+ Sbjct: 667 GRNQRESELIGQTVKVKKGRWKGYIGIV--VDESDQKVKVEIH 707 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKS--RVHVEVVIFGRVTPVEL 168 + +VG+ + V G ++ G V VD+ + V V R V + Sbjct: 457 KYVKVGDHIKVVSGMYSGETGTVVAVDDSEGAPVAIVLVDSMAREIQVRV 506 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 11/153 (7%) Query: 32 DHLVTEITIPSERVVSVRKG---RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIG- 87 L +P V R +++ F + + T +D + Sbjct: 311 QKLFHANMVPGADVARRRYPSTGEMMDTFDNDFYQEGFLIKEVNIATMLTTEDVNPSLDE 370 Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 + E ++ VEA + + V G+ V V +G + G+V + + Sbjct: 371 INRFSSVAGEDGEHTAEEMLASVEADDWK--NKVDLTKGDTVRVIEGDLINLMGVVLSTN 428 Query: 148 EEKSRVHVEV---VIFGRVTPVELAYNQVEKIV 177 V V I + T ++ Q+ K V Sbjct: 429 TANDTVRVMPLHEEI--KDTILDFQLKQLMKYV 459 >gi|189465956|ref|ZP_03014741.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM 17393] gi|189434220|gb|EDV03205.1| hypothetical protein BACINT_02319 [Bacteroides intestinalis DSM 17393] Length = 177 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 8/159 (5%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E + + S LD + +P++ V+S K R+ S Sbjct: 6 KYWFAARTRDKQEFAIGKFLEKLKSNENLD---IDYYLPTKIVISQLKHRRKRSVVPVIR 62 Query: 63 GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 + + A T + + V D +++ M ++ Sbjct: 63 NLIFVCATKQTACDISNVYGVQLFYMKDLFTHSMLVVPDKQMKDFMFVMDLNPDGVSFDN 122 Query: 122 FF-EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 +G +V V G F G + E ++ +V + I Sbjct: 123 EPLTIGNKVKVVKGDFRGIEG---EIATEANKTYVVIRI 158 >gi|296242675|ref|YP_003650162.1| 50S ribosomal protein L24A [Thermosphaera aggregans DSM 11486] gi|296095259|gb|ADG91210.1| LSU ribosomal protein L24A [Thermosphaera aggregans DSM 11486] Length = 162 Score = 41.6 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 32/155 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRS---GLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 + V+ E I R G D ++ I IP Sbjct: 14 FAVRTTMGRELDVALVIARRAEELIAKGEDPGISSIVIP-----------------PNVR 56 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 GYV + +Y + V P V+ E+E ++ Sbjct: 57 GYVFFEVEKLASLYRLASEVKYVK-----ASRPVKVSPEELEKLIMP-------KPVVES 104 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 VG+ V + GPF V +D K+ + V + Sbjct: 105 ISVGDVVEIIRGPFRGMKAQVTGIDRNKNMLTVNI 139 >gi|119500830|ref|XP_001267172.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL 181] gi|119415337|gb|EAW25275.1| transcription initiation protein spt5 [Neosartorya fischeri NRRL 181] Length = 1050 Score = 41.6 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V +I R+ P ++ GY+ + Sbjct: 238 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIKIISAFERGG-AMSGYIYV 285 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 286 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 333 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ VD V V + Sbjct: 334 WVRIKRGKYQGDLAQIEEVDTNGLEVTVRL 363 >gi|260885491|ref|ZP_05735129.2| putative transcriptional regulatory protein [Prevotella tannerae ATCC 51259] gi|260852484|gb|EEX72353.1| putative transcriptional regulatory protein [Prevotella tannerae ATCC 51259] Length = 359 Score = 41.6 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 37/140 (26%), Gaps = 6/140 (4%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 +++ + + R G + I+ + + + Sbjct: 48 LKHIAQKLKADNCFPTFVHQSCKYIRNHDKVCKQLRPTISGLIFIQGEVKAVEAYFKERL 107 Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV----SSVFFEVG-ERVCVSDGPFA 137 P++ + ++ + G + V ++ GP Sbjct: 108 PELHLACDYATRCVARIPHAVMQPFMKIAELDATRIRFLLHPFEHYAGSQLVRITSGPMT 167 Query: 138 SFNGIVKNVDEEKSRVHVEV 157 G + +D ++ ++ + V Sbjct: 168 GLEGYIIRIDRDR-KLVLRV 186 >gi|255513719|gb|EET89984.1| NusG antitermination factor [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 150 Score = 41.6 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++V+V S E A + +LS+ D + I + GY+ Sbjct: 3 FVVKVTSGQENIAANILQSKLSKG--DAPIYSIIVIEG-----------------LRGYI 43 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 +++A K G P D E + ++ Sbjct: 44 IVEAQ---DELACRNFITKERSIKGIIPKPMDPADVEKL---------IATKSTAQDISR 91 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + V + GPF + V VDE KS + VE+ Sbjct: 92 NDIVEFTSGPFKGYKAKVLKVDELKSDITVEL 123 >gi|242398372|ref|YP_002993796.1| NusG transcription antitermination protein [Thermococcus sibiricus MM 739] gi|242264765|gb|ACS89447.1| NusG transcription antitermination protein [Thermococcus sibiricus MM 739] Length = 155 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 +E ++ + FE G+ V + GPF V VDE K + VE+ Sbjct: 83 IEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVEL 130 >gi|254476170|ref|ZP_05089556.1| hypothetical protein RR11_2008 [Ruegeria sp. R11] gi|214030413|gb|EEB71248.1| hypothetical protein RR11_2008 [Ruegeria sp. R11] Length = 216 Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 34/200 (17%) Query: 2 TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36 WY V++ + E +K S + L Sbjct: 11 EMDWYAVKLKARQNGGRRETLLGVEYETYKAGNGRMARRKVKGSGQRVFVPELVLQKAGF 70 Query: 37 EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 E+ +P + +S + K R G++ + +H + V G +G G Sbjct: 71 EVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMALDVVAGVMGAGG 130 Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV----GERVCVSDGPFASFNGIVKNVDEE 149 P ++D+++ +M + R SS + G+ V V GP +D Sbjct: 131 RPVRISDAKVRFLMRKFGGGRLRRRSSDVDQPRFAAGDLVRVEAGPLEGQQ--FALLDVT 188 Query: 150 KSRVHVEVVIFGRVTPVELA 169 + + G+ VEL Sbjct: 189 GGSARAVMTLLGKDVEVELE 208 >gi|148701963|gb|EDL33910.1| mCG145772 [Mus musculus] Length = 395 Score = 41.2 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + R+ V Sbjct: 233 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 284 >gi|297709947|ref|XP_002831674.1| PREDICTED: LOW QUALITY PROTEIN: G patch domain and KOW motifs-containing protein-like [Pongo abelii] Length = 376 Score = 41.2 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + RV V Sbjct: 229 QDKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGNRVVTV 283 >gi|288560120|ref|YP_003423606.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1] gi|288542830|gb|ADC46714.1| ribosomal protein L24P Rpl24p [Methanobrevibacter ruminantium M1] Length = 113 Score = 41.2 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 23/38 (60%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S+ +VG++V V G F G V+++D ++ +V VE Sbjct: 39 RSLPIKVGDKVQVVRGDFKGHEGKVESIDAKRYKVTVE 76 >gi|256842180|ref|ZP_05547685.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374955|ref|ZP_06984912.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|256736496|gb|EEU49825.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267455|gb|EFI09111.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 178 Score = 41.2 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 13/161 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ + + L ++ +P + + ++KG+KV + Sbjct: 8 QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQD 60 Query: 64 YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118 + + + T + T P V+D E++ M V ++ P Sbjct: 61 LLFVYDSRQHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFMQAVSSSDSPKYYLPE 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158 G ++ + G + G + + K R+ VE+ Sbjct: 121 EITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIKRLLVELK 161 >gi|220923747|ref|YP_002499049.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] gi|219948354|gb|ACL58746.1| NusG antitermination factor [Methylobacterium nodulans ORS 2060] Length = 212 Score = 41.2 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 25/135 (18%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RWY+V++ SN E+K GL+ +P+ + R+GR R PG Sbjct: 39 RWYVVRIDSNRERKI---------SEGLEAAGFATCVPASSTLVERRGRIREVRHRAAPG 89 Query: 64 YVLIKAVM-TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 Y+ + TD + PS E + + + RP V Sbjct: 90 YLFVGVDPGTDGRAALW----AYHDCVMASRLPSVFQLEEGRIVQARQQGEADRPFYCVM 145 Query: 123 FEVGERVCVSDGPFA 137 GPF Sbjct: 146 -----------GPFQ 149 >gi|125991228|ref|NP_776108.2| G patch domain and KOW motifs-containing protein [Mus musculus] gi|134034133|sp|Q56A08|GPKOW_MOUSE RecName: Full=G patch domain and KOW motifs-containing protein; AltName: Full=Protein MOS2 homolog gi|122889507|emb|CAM13581.1| G patch domain and KOW motifs [Mus musculus] Length = 488 Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + R+ V Sbjct: 233 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 284 >gi|329955864|ref|ZP_08296667.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328525244|gb|EGF52294.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 171 Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 12/174 (6%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ V V N E K + E+ +P + V G++V + Sbjct: 8 KHWHAVYVRHNTEFKVETWLRE---------QGVEVYLPVQDVFLEYAGKRVKVTKPVIT 58 Query: 63 GYVLIKAVMTD-KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 G V + ++ V + GT + + + + Sbjct: 59 GMVFVCLSRSELSVVEQAPNVHHFFSKRGTNAPLVIPDQQMADFRFMVDLSDTSILMVNE 118 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK 175 G V V+ G G + E K + V + G V + + V + Sbjct: 119 PITPGTMVTVAKGSMQGVRGEMVKY-ESKYYIAVRLQELGCA-LVSVPVSYVRR 170 >gi|38571790|gb|AAH62646.1| Gpkow protein [Mus musculus] Length = 368 Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + R+ V Sbjct: 113 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 164 >gi|254474575|ref|ZP_05087961.1| hypothetical protein RR11_410 [Ruegeria sp. R11] gi|214028818|gb|EEB69653.1| hypothetical protein RR11_410 [Ruegeria sp. R11] Length = 216 Score = 40.8 bits (94), Expect = 0.074, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 34/200 (17%) Query: 2 TPRWYIVQVYSN-------------CE-----------KKAVESIGG-RLSRSGLDHLVT 36 WY V++ + E +K S + L Sbjct: 11 EMDWYAVKLKARQNGGRRETLLGVEYETYKAGNGRMVRRKVKGSGQRVFVPELVLQKAGF 70 Query: 37 EITIP---SERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE 93 E+ +P + +S + K R G++ + +H + V G +G G Sbjct: 71 EVFLPVKREWQRISRFRPEKELRSRPAMEGWLFVGWPAGQARFHELMALDVVAGVMGAGG 130 Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV----GERVCVSDGPFASFNGIVKNVDEE 149 P ++D+++ +M + +R SS + G+ V V GP +D Sbjct: 131 QPVRISDAKVRFLMRKFGGGRKRRRSSDVDQPRFAAGDLVRVEAGPLEGQQ--FALLDVT 188 Query: 150 KSRVHVEVVIFGRVTPVELA 169 + + G+ VEL Sbjct: 189 GGSARAVMTLLGKDVEVELE 208 >gi|150008810|ref|YP_001303553.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|149937234|gb|ABR43931.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] Length = 174 Score = 40.8 bits (94), Expect = 0.074, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 13/159 (8%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY ++V+ N I LSR G++ + R G V Sbjct: 1 MMKKWYALKVFYNR----FSEIKATLSRDGIESYIPM----KTRSYPQPDGEVVIRRVPL 52 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 + ++ K + + G E + + ++++ Sbjct: 53 VAMLMFLRCDDDYISSLNSILDEKAMVYHRPGTQIPASIPDEEMDMFIMLTSSMEDGFEQ 112 Query: 117 -PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 P + E+ V+ G +A G + + + K V Sbjct: 113 IPYDDNLVKNAEKYRVTGGEYAGVVGYYRRIKKNKRLVI 151 >gi|255015010|ref|ZP_05287136.1| putative transcriptional regulator Updx-like protein [Bacteroides sp. 2_1_7] Length = 178 Score = 40.8 bits (94), Expect = 0.076, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 13/161 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ + + L ++ +P + + ++KG+KV + Sbjct: 8 QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQD 60 Query: 64 YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118 + + + T + T P V+D E++ + V ++ P Sbjct: 61 LLFVYDSRQHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFIQAVSSSDSPKYYLPE 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158 G ++ + G + G + + K R+ VE+ Sbjct: 121 EITPQMCGHKIRIIGGALNGYEGCLLKIRGSKIKRLLVELK 161 >gi|253570624|ref|ZP_04848032.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839573|gb|EES67656.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 354 Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 16/145 (11%) Query: 16 KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75 E + R I V + R E+ G V ++ D Sbjct: 56 NAVNEKLKER----------YCTFIHKSVVYKRKNKRIAKDEKPTISGLVFVQGESDDIQ 105 Query: 76 YHTIKDTPKVIGF-LGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSSVFFEVGER-V 129 ++ + + + + ++ ++ M + R P + ++ G V Sbjct: 106 SFLCENFFGLYLVKDCSTGKIAVIHNNVMQSFMQVSQVEPARIRFMPHTFDYYSSGNTLV 165 Query: 130 CVSDGPFASFNGIVKNVDEEKSRVH 154 ++ GP G + +K V Sbjct: 166 RITSGPLTGLEGYRIRISRDKCLVT 190 >gi|315425500|dbj|BAJ47162.1| hypothetical protein HGMM_F42C08C15 [Candidatus Caldiarchaeum subterraneum] gi|315427493|dbj|BAJ49097.1| hypothetical protein HGMM_F32H09C36 [Candidatus Caldiarchaeum subterraneum] gi|315427511|dbj|BAJ49114.1| hypothetical protein HGMM_F43G04C15 [Candidatus Caldiarchaeum subterraneum] Length = 302 Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 13/154 (8%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 R + + +P +++ + GYV ++A + + +++ Sbjct: 159 ELRFKVLEQEEWRDDARLPLFKLIE-KPAIASIFILPALKGYVFVEATSKEVIADALQNV 217 Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142 V + V++P+ V G+ V + GP G Sbjct: 218 RHVKARPPMPVKLETIASHL-----------VEKPLIEV-LAAGQMVEIVSGPLKGIVGK 265 Query: 143 VKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 V V++ + V +E+ P+ ++ + V + Sbjct: 266 VIRVEKSRREVTLELKEAAFQLPISVSIDAVRPL 299 >gi|297724235|ref|NP_001174481.1| Os05g0506200 [Oryza sativa Japonica Group] gi|255676476|dbj|BAH93209.1| Os05g0506200 [Oryza sativa Japonica Group] Length = 586 Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 A + + F + +NP P+ E + R F + Sbjct: 53 FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 110 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GE + + GP + V + ++ V V++ ++ V+ + V Sbjct: 111 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 156 >gi|222632160|gb|EEE64292.1| hypothetical protein OsJ_19129 [Oryza sativa Japonica Group] Length = 1559 Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 A + + F + +NP P+ E + R F + Sbjct: 607 FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 664 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GE + + GP + V + ++ V V++ ++ V+ + V Sbjct: 665 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 710 >gi|52353367|gb|AAU43935.1| unknown protein [Oryza sativa Japonica Group] Length = 1152 Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 A + + F + +NP P+ E + R F + Sbjct: 549 FFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 606 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GE + + GP + V + ++ V V++ ++ V+ + V Sbjct: 607 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 652 >gi|320164915|gb|EFW41814.1| hypothetical protein CAOG_06946 [Capsaspora owczarzaki ATCC 30864] Length = 287 Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%) Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGI 142 + +++ V G++V + GP G Sbjct: 14 HAFQQSTVYMRKMLLGMHMRHLRKIKKLDLLTPHLVPKPKLRKGDKVQIVGGPHIGQRGE 73 Query: 143 VKNVDEEKSRVHVE-VVIFGRVTPVE 167 V ++ R+ V V + R E Sbjct: 74 VVSIYRRSGRITVAGVNMVNRTLKTE 99 >gi|296235455|ref|XP_002762899.1| PREDICTED: G patch domain and KOW motifs-containing protein [Callithrix jacchus] Length = 475 Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 19/52 (36%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + R+ V Sbjct: 232 DKEDQPQGLVPGGAVMVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRMVTV 283 >gi|26324390|dbj|BAC25949.1| unnamed protein product [Mus musculus] gi|112362424|gb|AAI20680.1| Gpkow protein [Mus musculus] gi|133777142|gb|AAH92224.2| Gpkow protein [Mus musculus] Length = 357 Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + R+ V Sbjct: 102 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 153 >gi|159125111|gb|EDP50228.1| transcription initiation protein spt5 [Aspergillus fumigatus A1163] Length = 1058 Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V +I R+ P +R GY+ + Sbjct: 246 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIRIISAFERGG-AMSGYIYV 293 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 341 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ VD V V + Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTVRL 371 >gi|70994272|ref|XP_751976.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293] gi|74671343|sp|Q4WP96|SPT5_ASPFU RecName: Full=Transcription elongation factor spt5; AltName: Full=Chromatin elongation factor spt5 gi|66849610|gb|EAL89938.1| transcription initiation protein spt5 [Aspergillus fumigatus Af293] Length = 1058 Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V +I R+ P +R GY+ + Sbjct: 246 VRCKAGKEREVVFAIQKRIEER-----------PPGSRKPIRIISAFERGG-AMSGYIYV 293 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 294 EARRQADVMEALEDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELNPGG 341 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ VD V V + Sbjct: 342 WVRIKRGKYQGDLAQIEEVDTNGLDVTVRL 371 >gi|117306436|gb|AAI25336.1| Gpkow protein [Mus musculus] Length = 393 Score = 40.8 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + R+ V Sbjct: 138 DKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 189 >gi|300795010|ref|NP_001180181.1| G patch domain and KOW motifs-containing protein [Bos taurus] gi|297493123|ref|XP_002700126.1| PREDICTED: G patch domain and KOW motifs [Bos taurus] gi|296470759|gb|DAA12874.1| G patch domain and KOW motifs [Bos taurus] Length = 480 Score = 40.8 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 15/79 (18%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE---- 167 + G V V GP G V+ +D + R V + + R+ V Sbjct: 227 QEKDKEDQPKGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRMVTVSEYCL 286 Query: 168 -----------LAYNQVEK 175 L +QV + Sbjct: 287 RPVSQKEFDKNLNLSQVSR 305 >gi|1663764|gb|AAB18640.1| T54 protein [Homo sapiens] Length = 378 Score = 40.4 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + ++ RV V Sbjct: 228 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVWSRVVTV 282 >gi|146091153|ref|XP_001466459.1| transcription elongation regulator-like protein [Leishmania infantum JPCM5] gi|134070821|emb|CAM69179.1| transcription elongation regulator-like protein [Leishmania infantum JPCM5] Length = 700 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%) Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80 +T +P E V + F YV D+ + +K Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHF-DREGYLLK 359 Query: 81 DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135 + G + + + + + +V G+ V V+ G Sbjct: 360 TVSTRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQ 419 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+V+NV + + + GRV P+++ QVE Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455 >gi|322500301|emb|CBZ35379.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 700 Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%) Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80 +T +P E V + F YV D+ + +K Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGAREMENSYVWGDLHF-DREGYLLK 359 Query: 81 DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135 + G + + + + + +V G+ V V+ G Sbjct: 360 TVSTRMVVSGAQMEQPSTEELARFYNDQREKVERALKAAEAAAQVPNISIGDSVRVTTGQ 419 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+V+NV + + + GRV P+++ QVE Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTMPGRVQPIKV---QVE 455 >gi|256842209|ref|ZP_05547713.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308961|ref|ZP_07214906.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] gi|256736093|gb|EEU49423.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300832987|gb|EFK63612.1| putative transcription termination factor NusG [Bacteroides sp. 20_3] Length = 179 Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ ++V K E I L + +D P E V +R G + + Sbjct: 10 HWFALKV---FYNKVFE-IEESLKKDDIDCYF-----PCEYAVVMRNGVRKIIRKPIISS 60 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV--- 118 + + + + T KVI + E + +I V ++ ++ + Sbjct: 61 ILFFHSTTLRAMEIQRQFTDKVILYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEYL 120 Query: 119 --SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S F GERV V DG F G + + + SR+ V + Sbjct: 121 GADSTKFCRGERVRVIDGKFKGAEGYICRIKK-NSRLVVAI 160 >gi|74007394|ref|XP_538033.2| PREDICTED: similar to G patch domain and KOW motifs [Canis familiaris] Length = 484 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + R+ V Sbjct: 234 KEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGNRMVTV 284 >gi|218197068|gb|EEC79495.1| hypothetical protein OsI_20547 [Oryza sativa Indica Group] Length = 1564 Score = 40.4 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 4/108 (3%) Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 A + + F + NP P+ E + R F + Sbjct: 605 FFCAQCSSCENVKKRKELASFTFGNSDNNPIPMFSYEQNEQRD--NERPYRSTREQLFSI 662 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 GE + + GP + V + ++ V V++ ++ V+ + V Sbjct: 663 GEMLRIRKGPMKGYLCRVVRIF--RNDVTVKLDSLLKIVTVQAEFLSV 708 >gi|327282260|ref|XP_003225861.1| PREDICTED: LOW QUALITY PROTEIN: G patch domain and KOW motifs-containing protein-like [Anolis carolinensis] Length = 481 Score = 40.4 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF---EVGERVCVSDGPFASFNGIVKN 145 LG G + S + E ++ + P G V + GP G ++ Sbjct: 199 LGLGADRSAAQELEPIGRRRPLKPGEEPPKGKDEPLGLVPGGAVFIEAGPHKELYGKIEG 258 Query: 146 VDEEKSRVHVEVVIFGRVTPV 166 VD + +R+ V++ I G+ V Sbjct: 259 VDGDNARIMVKLAIGGKTVTV 279 >gi|301764757|ref|XP_002917796.1| PREDICTED: G patch domain and KOW motifs-containing protein-like [Ailuropoda melanoleuca] Length = 476 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 18/42 (42%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 G V V GP G ++ +D + R V + + R+ V Sbjct: 243 PGGAVMVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGNRMVTV 284 >gi|281353644|gb|EFB29228.1| hypothetical protein PANDA_006161 [Ailuropoda melanoleuca] Length = 477 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 18/42 (42%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 G V V GP G ++ +D + R V + + R+ V Sbjct: 243 PGGAVMVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGNRMVTV 284 >gi|325287059|ref|YP_004262849.1| 50S ribosomal protein L24 [Cellulophaga lytica DSM 7489] gi|324322513|gb|ADY29978.1| ribosomal protein L24 [Cellulophaga lytica DSM 7489] Length = 104 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V + G G V +VD EK++ VE Sbjct: 1 MMKLKIKTGDTVRIIAGDHKGTEGKVVSVDREKNKAIVE 39 >gi|169839653|ref|ZP_02872841.1| Transcription antitermination protein nusG [candidate division TM7 single-cell isolate TM7a] Length = 104 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 13/102 (12%) Query: 19 VESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKA--------- 69 + R+ L V I +P E V+ ++G+ V R+ FP YV+I+ Sbjct: 2 AADLEKRIESLDLTDRVFRILVPEEEVLEEKRGKMVKVPRKLFPSYVMIEMLSVREENEL 61 Query: 70 ----VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107 + ++ I++T V GF+G G +P P++D E ++ Sbjct: 62 GLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEATDLL 103 >gi|207110632|ref|ZP_03244794.1| transcription antitermination protein NusG [Helicobacter pylori HPKX_438_CA4C1] Length = 30 Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGL 31 WY +Q YS E+ ++I + + Sbjct: 1 MDWYAIQTYSGSEQSVKKAIENLANDHNI 29 >gi|150006689|ref|YP_001301432.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|298377654|ref|ZP_06987605.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] gi|149935113|gb|ABR41810.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503] gi|298265357|gb|EFI07019.1| transcription termination factor NusG [Bacteroides sp. 3_1_19] Length = 179 Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ ++V K E I L + +D P E V +R G + + Sbjct: 10 HWFALKV---FYNKVFE-IEESLKKDDIDCYF-----PCEDAVVMRNGVRKIIRKPIISS 60 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGE--NPSPVTDSEIEHIMNQVEAAVQRPV--- 118 + + + + T KVI + E + +I V ++ ++ + Sbjct: 61 ILFFHSTTLRAMEIQRQFTDKVILYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEYL 120 Query: 119 --SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 S F GERV V DG F G + + + SR+ V + Sbjct: 121 GADSTKFCRGERVRVIDGKFKGAEGYICRIKK-NSRLVVAI 160 >gi|198445322|gb|ACH88387.1| NusG [Candidatus Liberibacter asiaticus] Length = 25 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 25/25 (100%), Positives = 25/25 (100%) Query: 153 VHVEVVIFGRVTPVELAYNQVEKIV 177 VHVEVVIFGRVTPVELAYNQVEKIV Sbjct: 1 VHVEVVIFGRVTPVELAYNQVEKIV 25 >gi|321309525|ref|YP_004191854.1| transcription antitermination protein [Mycoplasma haemofelis str. Langford 1] gi|319801369|emb|CBY92015.1| transcription antitermination protein [Mycoplasma haemofelis str. Langford 1] Length = 294 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 F G+++ ++ E+ + V V +FGR PV ++V +I Sbjct: 256 GFKGVIQEINFEEGTLVVGVQMFGRRQPVACKISEVSEI 294 >gi|268323264|emb|CBH36852.1| putative transcription antitermination protein nusG [uncultured archaeon] Length = 155 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 28/152 (18%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y V+ N E + G L G+ + + E GY+ Sbjct: 5 YAVKTTVNQELAVATMVEGALGEEGVKDHGIKAIMVPEE----------------LKGYL 48 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A + + I+ P G + V S Sbjct: 49 LVEASFPEALEQIIQSIPHARGLVKGVMGLEEVEHFLTPK------------PSVTGILE 96 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + + GPF VK VDE + +E+ Sbjct: 97 GSIIEIVSGPFKGERARVKKVDEAHEEITIEL 128 >gi|109130748|ref|XP_001105674.1| PREDICTED: G patch domain and KOW motifs-containing protein-like [Macaca mulatta] Length = 498 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + RV V Sbjct: 252 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 306 >gi|62089198|dbj|BAD93043.1| G patch domain and KOW motifs variant [Homo sapiens] Length = 475 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + RV V Sbjct: 229 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 283 >gi|15811782|ref|NP_056513.2| G patch domain and KOW motifs-containing protein [Homo sapiens] gi|134048659|sp|Q92917|GPKOW_HUMAN RecName: Full=G patch domain and KOW motifs-containing protein; AltName: Full=G patch domain-containing protein 5; AltName: Full=Protein MOS2 homolog; AltName: Full=Protein T54 gi|12653257|gb|AAH00397.1| G patch domain and KOW motifs [Homo sapiens] gi|13111951|gb|AAH03148.1| G patch domain and KOW motifs [Homo sapiens] gi|119571079|gb|EAW50694.1| G patch domain and KOW motifs [Homo sapiens] gi|312151834|gb|ADQ32429.1| G patch domain and KOW motifs [synthetic construct] Length = 476 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + RV V Sbjct: 230 QEKDKEDQPQGLVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 284 >gi|311276265|ref|XP_003135125.1| PREDICTED: G patch domain and KOW motifs-containing protein-like [Sus scrofa] Length = 482 Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G ++ +D + R V + + R+ V Sbjct: 230 DKEDQPRGLVPGGAVVVLSGPHRGLYGKIEGLDPDNVRAMVRLAVGSRMVTV 281 >gi|307322274|ref|ZP_07601640.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306892091|gb|EFN22911.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] Length = 205 Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 37/175 (21%) Query: 4 RWYIVQVYSNC-----------EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR 52 RWY ++V E + +ESI R R +I +PS +R R Sbjct: 5 RWYAIRVAPGYQRMAAVDERLPENRPMESIIERNRRKD----GFDIFMPSFYT-ELRHHR 59 Query: 53 KVNSERRFFPGYV-LIKAVMTDKVYHTIKDTPKVIGFLGT---------GENPSPVTDSE 102 ++ FP V + + ++ V+ FL + +E Sbjct: 60 TKQILQKRFPFLVGYASVNLPRLNFEELRRVDGVVCFLRGANYGPLEFPDGTIEALYFAE 119 Query: 103 IEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 E + R + ++ G ++ + + +V V + Sbjct: 120 HERRQAFLYEQHCRKENERPEQI-----------QHLRGQLRKILPKGRKVRVSM 163 >gi|255038100|ref|YP_003088721.1| 50S ribosomal protein L24 [Dyadobacter fermentans DSM 18053] gi|254950856|gb|ACT95556.1| ribosomal protein L24 [Dyadobacter fermentans DSM 18053] Length = 113 Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 +E+ ++ + + G+ V V G G++ V EK R VE V + Sbjct: 1 MESTNKKAPAKLHVRKGDTVKVISGNAKGETGVITKVLVEKQRATVEGVNM 51 >gi|99081515|ref|YP_613669.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040] gi|99037795|gb|ABF64407.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040] Length = 189 Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 16/187 (8%) Query: 3 PRWYIVQVYSNC---EKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERR 59 WY+ + + E A + G L L E P ++ Sbjct: 1 MTWYLGRTTTRHIAPEPGAEKERGEFAVERQLRALGIEAHAPRRIEFKRVGKKRHAEPIT 60 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--------TGENPSPVTDSEIEHIMNQVE 111 I A + ++ + L P ++ Sbjct: 61 SAYLPGYIFAEIPASMFTRAIQCRGLSASLMAVPAQEVLHHVKPFIAKVKSENADAERII 120 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFAS----FNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 + R F+ GE + V GPFA F +V+ + + ++ I GR+T V+ Sbjct: 121 ESRDRAAMC-QFQPGEALDVLAGPFAERLVKFTRMVEAAHDSYPMIEAQIEILGRLTRVK 179 Query: 168 LAYNQVE 174 + V Sbjct: 180 IDPLDVR 186 >gi|254509729|ref|ZP_05121796.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11] gi|221533440|gb|EEE36428.1| hypothetical protein RKLH11_261 [Rhodobacteraceae bacterium KLH11] Length = 222 Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%) Query: 31 LDHLVTEITIPSERVVSVRK---GRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIG 87 L E+ +P ++V+ + K + ++ + + + +H + + + G Sbjct: 63 LRRAGFEVFLPIKKVLRRKNRYTPEKALISQPLLVDWLFVGWPVGESRWHDLMELDVISG 122 Query: 88 FLGTGENPSPVTDSEIEHIMNQV------EAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141 +GTG +P + + +M Q + + F VG+ V GP + Sbjct: 123 VMGTGGHPIEFPAARVMSLMRQWGGGHLSSECRRYLKTGSEFAVGDTARVIAGPLDGVHV 182 Query: 142 IVKNVDEEKSRVHVEVVIFGRVTPVEL--AYNQVEK 175 V VD V + + G E+ +V K Sbjct: 183 RV--VDVSGPTVKAALGMLGSEVVTEIRGDLLEVIK 216 >gi|301307918|ref|ZP_07213874.1| putative transcriptional regulator [Bacteroides sp. 20_3] gi|300834261|gb|EFK64875.1| putative transcriptional regulator [Bacteroides sp. 20_3] Length = 178 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 14/171 (8%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +WY+++ + + L ++ +P + + ++K +KV + Sbjct: 8 QWYVMR-------DLKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKDKKVREKVPVIQD 60 Query: 64 YVLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPV 118 + + + T + T P V+D E++ + V ++ P Sbjct: 61 LLFVYDSRRHLDSIVERTKTLQYRWLRNTFREPMTVSDLEMDRFIQAVSSSDSPKYYLPE 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR-VTPVEL 168 G ++ + G + G + + K + + V + G VE+ Sbjct: 121 EITPQMCGRKIRIIGGSLNGYEGCLLKIRGSKIK-RLLVELKGYLAVAVEV 170 >gi|49206933|ref|YP_026130.1| AnfA1 [Serratia entomophila] gi|48995180|gb|AAT48331.1| AnfA1 [Serratia entomophila] Length = 148 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+++ ++ L G++ P+E V + + Sbjct: 1 MKKKWYLIRCNYGK----IDLGQKSLEAMGVE-CFCPRLSPAELKVLFDNKKNFSKGWCI 55 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 FP Y+ ++ + I+ V GF+ G + + D I IM Sbjct: 56 FPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGINSIPDIVIGKIMK 103 >gi|224535680|ref|ZP_03676219.1| hypothetical protein BACCELL_00544 [Bacteroides cellulosilyticus DSM 14838] gi|224522718|gb|EEF91823.1| hypothetical protein BACCELL_00544 [Bacteroides cellulosilyticus DSM 14838] Length = 125 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 + + A +D + + ++DSE++ + Sbjct: 2 PVVHNLLFVHACPSDVKRIKSQVSYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLM 61 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F GI V + R V + I G Sbjct: 62 YFQPDELNLSKGTKVRITGGDFEGQEGIFLKVKGARDR-RVVIEIQG 107 >gi|78174298|gb|AAI07645.1| T54l protein [Danio rerio] Length = 328 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + ++ G V V G G ++ VD + RV V++ I G+ + Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294 >gi|309797734|ref|ZP_07692119.1| transcription termination factor NusG [Escherichia coli MS 145-7] gi|308118654|gb|EFO55916.1| transcription termination factor NusG [Escherichia coli MS 145-7] Length = 169 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 14/134 (10%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR---KVNSER 58 WY++Q + + L+ L P E R + Sbjct: 1 MEWYVLQFTTTRF----------AAVFAHLERLNFSYFCPMETERYRRPDKIISYRERRL 50 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPV 118 FPGY+ I+A + TI P V F+ G P PV + + ++ + + Sbjct: 51 PLFPGYLFIQADFEEVHSTTITAIPYVQRFISFGGEPLPVPEDVMAELLYRQSHTTAQAN 110 Query: 119 SSVFFEVGERVCVS 132 + + Sbjct: 111 LLRKSIPHDFAEIL 124 >gi|119719162|ref|YP_919657.1| 50S ribosomal protein L24P [Thermofilum pendens Hrk 5] gi|218547077|sp|A1RWS4|RL24_THEPD RecName: Full=50S ribosomal protein L24P gi|119524282|gb|ABL77654.1| LSU ribosomal protein L24P [Thermofilum pendens Hrk 5] Length = 131 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 20/37 (54%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+RV + G F G V +VD +K R+HVE Sbjct: 45 RIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVE 81 >gi|157820365|ref|NP_001102851.1| G patch domain and KOW motifs-containing protein [Rattus norvegicus] gi|149028450|gb|EDL83835.1| rCG22908, isoform CRA_a [Rattus norvegicus] Length = 487 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + RV V Sbjct: 232 DKEGQPQGLMHGGAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRVVNV 283 >gi|159463654|ref|XP_001690057.1| global transcription factor [Chlamydomonas reinhardtii] gi|158284045|gb|EDP09795.1| global transcription factor [Chlamydomonas reinhardtii] Length = 1188 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI--FGRV 163 + + F G+ V + G + V V + ++V I FG Sbjct: 412 SLMATLPTDGTAATKGTFMKGDTVRIVKGDLENLTARVTGVSADGTKVTAVPDIKGFGEE 471 Query: 164 TPVELAYNQVEKI 176 VE +++ K+ Sbjct: 472 --VEFDMDELAKV 482 >gi|319643638|ref|ZP_07998257.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] gi|317384737|gb|EFV65697.1| transcriptional regulator UpxY-like protein [Bacteroides sp. 3_1_40A] Length = 321 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 14/132 (10%) Query: 36 TEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK----------DTPKV 85 PS + V G+ VN++R YV ++A D + K Sbjct: 19 FGFFAPSYQEVRRIDGKFVNTQRPLLFNYVFVRASERDVFQLMQRFPVLSFLPRVRERKR 78 Query: 86 IGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKN 145 F + N + + +P G+R+ +++G F V Sbjct: 79 EYFPYLSDAAMENLQWVARSYSNTLPVYIPQPD---GLRKGDRIRITEGRFKGVEATVV- 134 Query: 146 VDEEKSRVHVEV 157 + R V V Sbjct: 135 IQPGAGRKDVMV 146 >gi|261880666|ref|ZP_06007093.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332619|gb|EFA43405.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 201 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 8/147 (5%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIP-SERVVSVRKGRKVNSERRFFPG 63 W+ ++++S+ E I L GL+ + + +R V++ + F Sbjct: 32 WFALRLFSSR----QEEIAKMLENEGLEVFIPMEYVDVEDRRNHVKRVLRPVVRNLLFIK 87 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 + + +M + + G+ + E + R S Sbjct: 88 KTVCQKIMRGIIAALPYRVSIIRKTPGSIDYYEIPAREMFEFRAMCNPEILARKFLSEAQ 147 Query: 124 ---EVGERVCVSDGPFASFNGIVKNVD 147 + G V V+ GP G + + Sbjct: 148 AKLKAGTPVMVTHGPLKGLQGKLVRSN 174 >gi|238491498|ref|XP_002376986.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357] gi|220697399|gb|EED53740.1| transcription initiation protein spt5 [Aspergillus flavus NRRL3357] Length = 895 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ E++ + +I R+ + I + GY+ + Sbjct: 83 VRCKPGKEREVIFAIQKRIEERPMGSRNPMKIISAFERGG------------AMSGYIYV 130 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 131 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELLPGG 178 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + + ++ V+ V V + Sbjct: 179 WVRIKRGKYQNDLAQIEEVETNGLAVTVRL 208 >gi|169773511|ref|XP_001821224.1| transcription elongation factor SPT5 [Aspergillus oryzae RIB40] gi|110826533|sp|Q2UGU3|SPT5_ASPOR RecName: Full=Transcription elongation factor spt5; AltName: Full=Chromatin elongation factor spt5 gi|83769085|dbj|BAE59222.1| unnamed protein product [Aspergillus oryzae] Length = 1026 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ E++ + +I R+ + I + GY+ + Sbjct: 214 VRCKPGKEREVIFAIQKRIEERPMGSRNPMKIISAFERGG------------AMSGYIYV 261 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 262 EARRQADVMDALQDMSNVY----PRTKMILVPVREMPDLL--------RVQKSEELLPGG 309 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + + ++ V+ V V + Sbjct: 310 WVRIKRGKYQNDLAQIEEVETNGLAVTVRL 339 >gi|145347649|ref|XP_001418275.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578504|gb|ABO96568.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 938 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + AV + + F G++V + +G + G+V+ +D + RV V Sbjct: 303 LAALSKAVGTRKTDLKFMPGDQVIIVEGDLRNLEGVVERIDPD-GRVVVN 351 >gi|225011658|ref|ZP_03702096.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A] gi|225004161|gb|EEG42133.1| ribosomal protein L24 [Flavobacteria bacterium MS024-2A] Length = 104 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + G+ V V G G V ++ EK+R VE Sbjct: 4 KIKIKKGDTVRVIAGSEKGSEGTVVSISREKNRAIVE 40 >gi|159041522|ref|YP_001540774.1| transcription termination antitermination factor [Caldivirga maquilingensis IC-167] gi|157920357|gb|ABW01784.1| Transcription termination antitermination factor [Caldivirga maquilingensis IC-167] Length = 155 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 32/169 (18%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+V + E I RL +PS G V + Sbjct: 11 VRVIAGQEYNVAAIIRTRLELME-KDKRKYYNVPS------------IVVPPNVQGQVYL 57 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 + + + G + + ++ + ++ + Sbjct: 58 ETPHSYVAIDLSTGIKQYRGLMMG---------------KVPLTELMKMIKREIKVQIND 102 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVT--PVELAYNQVE 174 V + PF F V +VDE+ + V + + F T PV L + Sbjct: 103 VVEIITEPFRGFKAKVVDVDEKNNTVKLLL--FDTATNIPVTLPIKSIR 149 >gi|327294527|ref|XP_003231959.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892] gi|326465904|gb|EGD91357.1| hypothetical protein TERG_07577 [Trichophyton rubrum CBS 118892] Length = 356 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 18/106 (16%) Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + + + + + + + V V F G+RVC+ G G + VDEE Sbjct: 69 RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKILQVDEE 128 Query: 150 KSRVHVE-VVIFG-----------------RVTPVELAYNQVEKIV 177 V VE V +F R PV ++++ V +V Sbjct: 129 SQSVTVEGVNMFDVEFPAFALAEDSDKRPYRSYPVPISFDDVRLVV 174 >gi|330998566|ref|ZP_08322385.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] gi|329568113|gb|EGG49934.1| transcription termination/antitermination factor NusG [Paraprevotella xylaniphila YIT 11841] Length = 184 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 13/160 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W++++ S + L + + P VV++ +G++V F Sbjct: 15 WFVLR-------DLKRSNARHPAYRQLAEMGLRVFTPMHEVVTLVRGQRVRKNVPFLHDL 67 Query: 65 VLIKAVMTDKVYHTIKD-TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ----RPVS 119 + ++ + +D T + G +P V E+E + VE+ + P Sbjct: 68 LFVRERYSALRSVVERDPTLQFRYVRGGYCSPMTVRTVEMERFIRAVESTFRPRYYLPGE 127 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEK-SRVHVEVV 158 +G +V + GP + G + ++ + R+ +++ Sbjct: 128 ISPSMIGRQVLIVGGPLNGYEGHLLSIRGSRVKRLFIDLS 167 >gi|95132389|gb|AAI16536.1| T54l protein [Danio rerio] Length = 364 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + ++ G V V G G ++ VD + RV V++ I G+ + Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294 >gi|322826887|gb|EFZ31287.1| transcription initiation protein, putative [Trypanosoma cruzi] Length = 579 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 22/170 (12%) Query: 21 SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-----GYV------LIKA 69 + + + + VT +P E V + F YV Sbjct: 168 DLAQVVEVHPISNQVTVKVVPREDFVGKPFNKIEMRLPPRFFVPTLAAYVQERGDFYRWG 227 Query: 70 VMT-DKVYHTIKDTPKVIGFLGTG------ENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 +T DK + +K + GT E + +++ E + V Sbjct: 228 DLTFDKEGYLLKTVSSRMVISGTKMENPTVEEIALFFNNDRERVREAVARFASVGHQGAD 287 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR----VTPVEL 168 +G V V G G ++N+ + + V + + GR VEL Sbjct: 288 LRIGNTVRVVSGQLRETVGTIENIFLDTNTVSLLCPVPGRKEPIKVRVEL 337 >gi|3355884|dbj|BAA31975.1| NusG-like protein [Streptomyces lavendulae] Length = 19 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 16/18 (88%) Query: 158 VIFGRVTPVELAYNQVEK 175 IFGR TPVEL+++Q++K Sbjct: 1 EIFGRETPVELSFDQIQK 18 >gi|187469065|gb|AAI66817.1| Gpkow protein [Rattus norvegicus] Length = 357 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP+ G V+ +D + R V + + RV V Sbjct: 102 DKEGQPQGLMHGGAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRVVNV 153 >gi|290982037|ref|XP_002673737.1| predicted protein [Naegleria gruberi] gi|284087323|gb|EFC40993.1| predicted protein [Naegleria gruberi] Length = 963 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 19/148 (12%) Query: 32 DHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGT 91 L + +P V + + + Y K H + + + T Sbjct: 274 QRLFNKELLPQTEQEKVEDAKDQIT----YSVYQGNKFHDGYVYKHIHLKSLETKDIIPT 329 Query: 92 GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151 +E + +F+ G+ V V G G + N+DEE Sbjct: 330 NSELQIYYQNESPSTAISLS-------RKTYFKRGDNVRVIKGELRGMVGQITNIDEESQ 382 Query: 152 RVHVEVVIFGRV----TPVELAYNQVEK 175 + + + TP++ NQ++K Sbjct: 383 ----VITMLPKSNDINTPLQFTSNQLQK 406 >gi|12053565|emb|CAC20137.1| Actx protein [Escherichia coli] gi|324110940|gb|EGC04930.1| transcription termination proteinusG [Escherichia fergusonii B253] Length = 163 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 14/110 (12%) Query: 3 PRWYIVQ-VYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR---KVNSER 58 +WY++Q + L+ L P R + Sbjct: 1 MKWYVLQFTTTRF----------AAVFKHLERLNFSYYCPMATEKYRRPDKQLSYRERLT 50 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 FPGY+ I+A + TI P F+ G P V D E+ ++ Sbjct: 51 PLFPGYLFIQADFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEVCNVQK 100 >gi|14520546|ref|NP_126021.1| 50S ribosomal protein L24P [Pyrococcus abyssi GE5] gi|13124478|sp|Q9V1U7|RL24_PYRAB RecName: Full=50S ribosomal protein L24P gi|5457762|emb|CAB49252.1| rpl24P LSU ribosomal protein L24P [Pyrococcus abyssi GE5] Length = 121 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G F G V VD ++ R++VE Sbjct: 45 PVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVE 79 >gi|55742464|ref|NP_001007208.1| G patch domain and KOW motifs-containing protein [Danio rerio] gi|82108178|sp|Q90X38|GPKOW_DANRE RecName: Full=G patch domain and KOW motifs-containing protein; AltName: Full=Protein T54-like gi|26984453|emb|CAD10081.2| novel protein similar to human T54 protein [Danio rerio] Length = 506 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + ++ G V V G G ++ VD + RV V++ I G+ + Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294 >gi|169145960|emb|CAQ15577.1| T54 protein-like [Danio rerio] Length = 506 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + ++ G V V G G ++ VD + RV V++ I G+ + Sbjct: 240 DEKGKEEEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTI 294 >gi|255008110|ref|ZP_05280236.1| putative LPS biosynthesis related transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313145828|ref|ZP_07808021.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134595|gb|EFR51955.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 172 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M+ + W+ + + E ++ L E +P++ V+ K R+ E Sbjct: 1 MSEQQEYWFAARTKKDQEFAIRNALEK---------LGIEYFLPTQFVIRQLKYRRRRVE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEA--AVQ 115 + ++ T D + + + ++ V Sbjct: 52 VPVIKNLIFVRTTKERAWSITKDDHVPLFYMKDLYTHTLLIVPNKQMEDFKFVMDLAPEN 111 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + VG +V V G F G + ++ +R +V + I G Sbjct: 112 VTFDDLPLTVGTKVQVVKGEFCGIEGELSSL---ANRTYVVIRIHG 154 >gi|291241653|ref|XP_002740721.1| PREDICTED: suppressor of Ty 5 homolog [Saccoglossus kowalevskii] Length = 1095 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +G+ V + +GPF + GIVK+ E +RV + Sbjct: 718 IGQTVRIREGPFKGYIGIVKDATESTARVEL 748 >gi|307354334|ref|YP_003895385.1| 50S ribosomal protein L24 [Methanoplanus petrolearius DSM 11571] gi|307157567|gb|ADN36947.1| ribosomal protein L24 [Methanoplanus petrolearius DSM 11571] Length = 121 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 VG+ V V G F G+V VD EK V V Sbjct: 49 VGDTVKVQRGDFRGEEGVVDGVDTEKGTVIV 79 >gi|71661514|ref|XP_817777.1| transcription initiation protein [Trypanosoma cruzi strain CL Brener] gi|70882989|gb|EAN95926.1| transcription initiation protein, putative [Trypanosoma cruzi] Length = 720 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 22/170 (12%) Query: 21 SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP-----GYV------LIKA 69 + + + + VT +P E V + F YV Sbjct: 309 DLAQVVEVHPISNQVTVKVVPREDFVGKPFKKIEIRLPPRFFVPTLAAYVQERGDFYRWG 368 Query: 70 VMT-DKVYHTIKDTPKVIGFLGTGENPSPVTD------SEIEHIMNQVEAAVQRPVSSVF 122 +T DK + +K + GT V + ++ E + V Sbjct: 369 DLTFDKEGYLLKTVSSRMVISGTKMKNPTVEEIALFFNNDRERVREAVARFASVGHRGAD 428 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR----VTPVEL 168 +G V V G G ++N+ + + V + + GR VEL Sbjct: 429 LRIGNTVRVVSGQLRETVGTIENIFLDTNTVSLSCPVPGRKEPIKVRVEL 478 >gi|325297433|ref|YP_004257350.1| putative transcriptional regulator Updx-like protein [Bacteroides salanitronis DSM 18170] gi|324316986|gb|ADY34877.1| putative transcriptional regulator Updx-like protein [Bacteroides salanitronis DSM 18170] Length = 203 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 7/144 (4%) Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIK-AVMTDKVYHTIKDTPKVIGFLGTGENP 95 ++ P + R G++ E F + + + DT + G + P Sbjct: 59 QVFTPMVWKLVTRNGKRYREEVPFMQDLLFVHDTRLAVDPIVEKYDTVQYRYVRGGYKIP 118 Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFF----EVGERVCVSDGPFASFNGIVKNVDEEK- 150 V ++++E ++ VE+ + +G +V + GP + G ++ + + Sbjct: 119 MTVREADMERFIHAVESTENTRYYAPEEISSDMIGRKVRIVGGPLDGYEGNLQKMQGART 178 Query: 151 SRVHVEV-VIFGRVTPVELAYNQV 173 R+ VE+ + V+ Y Q+ Sbjct: 179 KRMFVELPNLLAAAVEVQPEYIQL 202 >gi|220939465|emb|CAX15715.1| G patch domain and KOW motifs [Mus musculus] Length = 189 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 G V V GP+ G V+ +D + R V + + R+ V Sbjct: 8 MHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNRIVTV 50 >gi|47229182|emb|CAG03934.1| unnamed protein product [Tetraodon nigroviridis] Length = 493 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQR-PVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 LG G + S + D E + +R + G V V GP G ++ V Sbjct: 206 LGLGADRSLIKDLEPSKRKQPPKPGDERTQEEELVMAPGSCVLVESGPHKDKYGKIEGVY 265 Query: 148 EEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + +RV V++ I G+ V+++ V + Sbjct: 266 PDNARVVVKLAIGGK--TVDISQYIVRLV 292 >gi|302823823|ref|XP_002993560.1| hypothetical protein SELMODRAFT_449156 [Selaginella moellendorffii] gi|300138627|gb|EFJ05389.1| hypothetical protein SELMODRAFT_449156 [Selaginella moellendorffii] Length = 931 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 5/115 (4%) Query: 37 EITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPS 96 ++ + + +V + ++ F + LI + GT + Sbjct: 415 DVRVFRDSIVETSEVTCGLTKLGEFELHDLIALDPMTVGVIVRIEADGCQVLKGTPDKQE 474 Query: 97 PV---TDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + + + N++ R + V V + V V GPF G+V++++ Sbjct: 475 VITVKQRDLRKRLYNKMINTQDRDTNVVS--VKDIVRVVSGPFKGKQGVVEHINR 527 >gi|219850845|ref|YP_002465277.1| NusG antitermination factor [Methanosphaerula palustris E1-9c] gi|219545104|gb|ACL15554.1| NusG antitermination factor [Methanosphaerula palustris E1-9c] Length = 162 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 32/153 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + ++ S E+ ++I + ++ + V + P + GYV Sbjct: 16 FAIKTTSKQERTVADNIKKAVDQTDI--KVYSVMAP-----------------KELQGYV 56 Query: 66 LIKA-VMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 L++ +++ I+ P L + +V + Sbjct: 57 LVETPEKLNRMEQLIERVPHARAILRGET------------ALAEVAHFLVPKPVVSGIV 104 Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + + GPF IVK VD K + VE+ Sbjct: 105 EGTIIELIAGPFKGEKAIVKRVDSGKEEITVEL 137 >gi|163803075|ref|ZP_02196960.1| hypothetical protein 1103602000564_AND4_05414 [Vibrio sp. AND4] gi|159173153|gb|EDP57983.1| hypothetical protein AND4_05414 [Vibrio sp. AND4] Length = 152 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVV---SVRKGRKVNSERR 59 WY+V S L R L+ E+ P R G+ + Sbjct: 2 KNWYLVYC------NVKNSRRDVLIRF-LNSFGVEVFNPIMTYYKARKDRPGKFRKQTKS 54 Query: 60 FFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIM 107 F Y+ I+ T + + + FL + + + + IE++ Sbjct: 55 LFSNYMFIQFDCTKFSFSKFDNIEGISYFLRSSGQIATIPEPLIENLR 102 >gi|317038158|ref|XP_001401698.2| transcription elongation factor SPT5 [Aspergillus niger CBS 513.88] Length = 1053 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V SI R+ P ++ GY+ + Sbjct: 225 VRCKAGKEREVVFSIQKRIEER-----------PPGSRNPIKIMSAFERGG-AMAGYIYV 272 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 273 EARRQADVMDALQDMTNVY----PRTKMILVPVREMPDLL--------RVQKSEELMPGG 320 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ V+ V V + Sbjct: 321 WVRIKRGKYQGDLAQIEEVETNGLAVTVRL 350 >gi|134058612|emb|CAK38596.1| unnamed protein product [Aspergillus niger] Length = 1052 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ + E++ V SI R+ P ++ GY+ + Sbjct: 224 VRCKAGKEREVVFSIQKRIEER-----------PPGSRNPIKIMSAFERGG-AMAGYIYV 271 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A V ++D V V E+ ++ R S G Sbjct: 272 EARRQADVMDALQDMTNVY----PRTKMILVPVREMPDLL--------RVQKSEELMPGG 319 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + ++ V+ V V + Sbjct: 320 WVRIKRGKYQGDLAQIEEVETNGLAVTVRL 349 >gi|224539520|ref|ZP_03680059.1| hypothetical protein BACCELL_04425 [Bacteroides cellulosilyticus DSM 14838] gi|224518858|gb|EEF87963.1| hypothetical protein BACCELL_04425 [Bacteroides cellulosilyticus DSM 14838] Length = 125 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR-- 116 + + A ++ + + ++DSE++ + Sbjct: 2 PVVHNLLFVHARPSEVKRIKSQVSYLQYITDTRSGQKIIISDSEMQRFIAVAGTYNDHLM 61 Query: 117 --PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 + G +V ++ G F GI V + R V + I G Sbjct: 62 YFQPDELNLSKGTKVRITGGDFEGQEGIFVKVKGARDR-RVVIEIQG 107 >gi|150025396|ref|YP_001296222.1| 50S ribosomal protein L24 [Flavobacterium psychrophilum JIP02/86] gi|166222052|sp|A6GZ88|RL24_FLAPJ RecName: Full=50S ribosomal protein L24 gi|149771937|emb|CAL43411.1| 50S ribosomal protein L24 [Flavobacterium psychrophilum JIP02/86] Length = 104 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 + + + G+ V V G G V VD EK++ VE V + + T Sbjct: 1 MIKLKIKTGDIVRVIAGDHKGAEGKVVKVDREKNKAIVEGVNMVSKHTK 49 >gi|332158012|ref|YP_004423291.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2] gi|331033475|gb|AEC51287.1| 50S ribosomal protein L24P [Pyrococcus sp. NA2] Length = 121 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G F G V VD ++ R++VE Sbjct: 45 PVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVE 79 >gi|238898528|ref|YP_002924209.1| putative NusG-type transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466287|gb|ACQ68061.1| putative NusG-type transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 154 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 9/118 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SER 58 M +WY+ S C ++ L + PS + R RK Sbjct: 1 MEKKWYLTCHKSGCSNLYK-------AQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIE 53 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 F GY+ I+ + + P+ ++ ++ IM Sbjct: 54 PLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMRFPLCMNDE 111 >gi|225457789|ref|XP_002265283.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1022 Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +G + + GPF + G V +V+ V VE+ ++ V + NQ+ Sbjct: 690 IGSTIKIRQGPFKGYRGRVVDVNG--QSVRVELE--SQMKVVTVDRNQI 734 >gi|302142757|emb|CBI19960.3| unnamed protein product [Vitis vinifera] Length = 1034 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 +G + + GPF + G V +V+ V VE+ ++ V + NQ+ Sbjct: 702 IGSTIKIRQGPFKGYRGRVVDVNG--QSVRVELE--SQMKVVTVDRNQI 746 >gi|67540918|ref|XP_664233.1| hypothetical protein AN6629.2 [Aspergillus nidulans FGSC A4] gi|40738968|gb|EAA58158.1| hypothetical protein AN6629.2 [Aspergillus nidulans FGSC A4] gi|259480209|tpe|CBF71131.1| TPA: ribosomal protein L14 (AFU_orthologue; AFUA_6G03830) [Aspergillus nidulans FGSC A4] Length = 218 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 3/91 (3%) Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 + D V T +N E+ + + EVG Sbjct: 28 NTEIRDPVSRVRTCAFWTTSTTPTFDNNFHHPSPELSTEAFAMADIDVKIAQWKLVEVGR 87 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 V + GPF + + + K V V Sbjct: 88 VVLIRRGPFTGKLATIVEIVDHK---RVLVD 115 >gi|319952185|ref|YP_004163452.1| lsu ribosomal protein l24p [Cellulophaga algicola DSM 14237] gi|319420845|gb|ADV47954.1| LSU ribosomal protein L24P [Cellulophaga algicola DSM 14237] Length = 104 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + +VG+ V + G G + +D +K++ VE Sbjct: 1 MKKLKIKVGDIVRIVAGDHKGVEGKIMKIDFDKNKAIVE 39 >gi|150397106|ref|YP_001327573.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419] gi|150028621|gb|ABR60738.1| hypothetical protein Smed_1904 [Sinorhizobium medicae WSM419] Length = 205 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 20/166 (12%) Query: 1 MTP-RWYIVQVYSNCEK--KAVESI-----GGRLSRSGLDHLVTEITIPSERVVSVRKGR 52 M+ RWY ++ ++ E + + +I +PS ++ R Sbjct: 1 MSRSRWYAIRTAPGYQRMAAVDERLPESRRMESIIERNCRKDGFDIFMPSFYK-ELKHHR 59 Query: 53 KVNSERRFFPGYV-LIKAVMTDKVYHTIKDTPKVIGFLGTGEN-----PSPVTDSEIEHI 106 + FP V + + ++ + FL PS ++ Sbjct: 60 TNEIIEKRFPFLVGYAFVNLPRLNFEELRRVDGAVCFLRGANYGPLEFPSATIEALYFAE 119 Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPF-----ASFNGIVKNVD 147 + +A + E E++ G V VD Sbjct: 120 HERRQAFLYEQHCRKENERHEQIQHLRGQLRKILPKGRKARVSMVD 165 >gi|45358973|ref|NP_988530.1| 50S ribosomal protein L24P [Methanococcus maripaludis S2] gi|74579566|sp|Q6LXE2|RL24_METMP RecName: Full=50S ribosomal protein L24P gi|45047839|emb|CAF30966.1| LSU ribosomal protein L24P [Methanococcus maripaludis S2] Length = 119 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +S+ + G+ V V G F G V VD ++ VE Sbjct: 43 NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80 >gi|254500965|ref|ZP_05113116.1| Transcription termination factor nusG domain protein [Labrenzia alexandrii DFL-11] gi|222437036|gb|EEE43715.1| Transcription termination factor nusG domain protein [Labrenzia alexandrii DFL-11] Length = 215 Score = 38.5 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 14/165 (8%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLD-HLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W ++ CE +A + + G + L + R V+ + R FP Sbjct: 29 WVVIHTNPKCETRARDGLLGAGLLAFLPMEQIERR---HGRGRKVKPAQTYTVIRPMFPR 85 Query: 64 YVLIKAVMTD----KVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVS 119 Y+ + V+ F TG I+ + RPV+ Sbjct: 86 YLFAGMDVKKGQSVDQIRACDGVKGVLSFDKTGAVARVAVSDLIKILELSHGTFEGRPVA 145 Query: 120 SVFF------EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + G V + G + + V D K RV E+ Sbjct: 146 DGQMADVARLKEGAVVKLVKGSWCGQDLTVTGYDAAKERVIGELT 190 >gi|134045214|ref|YP_001096700.1| 50S ribosomal protein L24P [Methanococcus maripaludis C5] gi|150402579|ref|YP_001329873.1| 50S ribosomal protein L24P [Methanococcus maripaludis C7] gi|166222070|sp|A4FWB0|RL24_METM5 RecName: Full=50S ribosomal protein L24P gi|166222071|sp|A6VGZ6|RL24_METM7 RecName: Full=50S ribosomal protein L24P gi|132662839|gb|ABO34485.1| LSU ribosomal protein L24P [Methanococcus maripaludis C5] gi|150033609|gb|ABR65722.1| ribosomal protein L24 [Methanococcus maripaludis C7] Length = 119 Score = 38.5 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +S+ + G+ V V G F G V VD ++ VE Sbjct: 43 NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80 >gi|154340088|ref|XP_001566001.1| transcription elongation regulator-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063319|emb|CAM45525.1| transcription elongation regulator-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 693 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 22/159 (13%) Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80 +T +P E V + F YV D+ + +K Sbjct: 294 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVDVREMENSYVWGDLHF-DREGYLLK 352 Query: 81 DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV-----GERVCVSDGP 135 + G + + + + + + +V G+ V V+ G Sbjct: 353 TVSTRMVVSGAQLEQPSIEELARFYNDQREKVERALRAAEAAAQVPPISIGDSVRVTTGQ 412 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+V+NV + + + GRV P+++ QVE Sbjct: 413 LRNTIGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 448 >gi|226204|prf||1501256A ribosomal protein L16 Length = 118 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + +P+ + + + + +V G+ V V G FA G V NVD + Sbjct: 8 RKSQRRAPLHERRKQVRTLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLD 67 Query: 150 KSRVHVE 156 K+ +HVE Sbjct: 68 KAVIHVE 74 >gi|315425861|dbj|BAJ47514.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum subterraneum] Length = 119 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 V G+ V V G F + G VK VD ++ +VE V I Sbjct: 42 VRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 81 >gi|307319523|ref|ZP_07598950.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306894895|gb|EFN25654.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] Length = 206 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 45/172 (26%), Gaps = 30/172 (17%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLV--------TEITIPSERV--VSVRKGRK 53 RWY ++ ++ + ++ ++ +I +PS R Sbjct: 5 RWYAIRTAPGY-QRMAAADERLPETRRMESIIERNCRKDGFDIFMPSFYKELKHHRTNEI 63 Query: 54 VNSERRFFPGYVLIK--------AVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEH 105 + F GY + D + ++ + + +E E Sbjct: 64 IQKRFPFLVGYAFVNLPRLNFEDLRRVDGIICLLRGSIGYGPLEFPDGMIEDLYFAEHER 123 Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 + R + ++ G ++ + + + V + Sbjct: 124 RQAFLYEQHCRKENERHEQI-----------QHLRGQLRKILPKGRKARVSM 164 >gi|150401817|ref|YP_001325583.1| 50S ribosomal protein L24P [Methanococcus aeolicus Nankai-3] gi|166222068|sp|A6UWU9|RL24_META3 RecName: Full=50S ribosomal protein L24P gi|150014520|gb|ABR56971.1| ribosomal protein L24 [Methanococcus aeolicus Nankai-3] Length = 119 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V + G F G V VD + +++VE Sbjct: 46 PVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVE 80 >gi|150399472|ref|YP_001323239.1| 50S ribosomal protein L24P [Methanococcus vannielii SB] gi|132817|sp|P14034|RL24_METVA RecName: Full=50S ribosomal protein L24P gi|166222074|sp|A6UQ55|RL24_METVS RecName: Full=50S ribosomal protein L24P gi|44759|emb|CAA34691.1| unnamed protein product [Methanococcus vannielii] gi|150012175|gb|ABR54627.1| ribosomal protein L24 [Methanococcus vannielii SB] Length = 119 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G F G V V+ ++ VE Sbjct: 46 PVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVE 80 >gi|302780661|ref|XP_002972105.1| hypothetical protein SELMODRAFT_96727 [Selaginella moellendorffii] gi|300160404|gb|EFJ27022.1| hypothetical protein SELMODRAFT_96727 [Selaginella moellendorffii] Length = 1003 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPV---TDSEIEHIMNQVEAAVQRP 117 F + LI + GT + + + + N++ R Sbjct: 516 FELHDLIALDPMTVGVIVRIEADGCQVLKGTPDKQEVITVKQRDLRKRLYNKMINTQDRD 575 Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDE 148 + V V + V V GPF G+V++++ Sbjct: 576 TNVVS--VKDIVRVVSGPFKGKQGVVEHINR 604 >gi|297623285|ref|YP_003704719.1| 50S ribosomal protein L24 [Truepera radiovictrix DSM 17093] gi|297164465|gb|ADI14176.1| ribosomal protein L24 [Truepera radiovictrix DSM 17093] Length = 111 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+RV V G G++ EK+RV VE Sbjct: 7 RTRIRLKKGDRVRVIAGAHKGAEGVIIATLPEKNRVVVE 45 >gi|20094655|ref|NP_614502.1| 50S ribosomal protein L24P [Methanopyrus kandleri AV19] gi|46397695|sp|Q8TW19|RL24_METKA RecName: Full=50S ribosomal protein L24P gi|19887816|gb|AAM02432.1| Ribosomal protein L24 [Methanopyrus kandleri AV19] Length = 149 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD ++ R++VE Sbjct: 50 GDMVRIMRGDFKGHEGEVVEVDLKRLRIYVE 80 >gi|326334534|ref|ZP_08200745.1| 50S ribosomal protein L24 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693303|gb|EGD35231.1| 50S ribosomal protein L24 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 105 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G V VD EK+R VE Sbjct: 2 MIKLKIKTGDTVQVIAGDHKGEKGKVLKVDREKNRAIVE 40 >gi|298675983|ref|YP_003727733.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303] gi|298288971|gb|ADI74937.1| NusG antitermination factor [Methanohalobium evestigatum Z-7303] Length = 157 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 31/152 (20%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 ++V+ +N E+ + VT + + GYV Sbjct: 12 FVVKTTANQERSVA----------NMVAQVTR---------KDKLDIRAVIAPDELKGYV 52 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L++A+ + V I+ P + + +T + Sbjct: 53 LVEALDSATVEQAIQRVPHAKALVKGQSSIDEITHFLTPK------------PTVTGITE 100 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G + ++ GPF VK VDE + VE+ Sbjct: 101 GTIIEITSGPFKGEKARVKRVDEGHEEITVEL 132 >gi|242398291|ref|YP_002993715.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739] gi|242264684|gb|ACS89366.1| 50S ribosomal protein L24P [Thermococcus sibiricus MM 739] Length = 120 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 18/31 (58%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V V G F G V VD ++ RVHVE Sbjct: 49 GDKVKVLRGDFKGHEGKVVEVDLKRYRVHVE 79 >gi|237710980|ref|ZP_04541461.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237727277|ref|ZP_04557758.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265750569|ref|ZP_06086632.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229434133|gb|EEO44210.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229454824|gb|EEO60545.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237465|gb|EEZ22915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 181 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 14/162 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--ITIPSERVVSVRKGRKVNSERRF 60 W+ ++V K +I L + + + + + + + V + F Sbjct: 9 KHWFALKV---FYNKVF-AIEELLLKKKIKCYIPCETVKVLKQDGTKKNVRKPVINSLLF 64 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 F I + + + P + + E+ M + + Sbjct: 65 FHSETYIA---KEIQKILTDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKGLEYF 121 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + F G+ V V DG F G + + + R+ + V Sbjct: 122 DTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITVH 162 >gi|10120936|pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution gi|14278051|pdb|1GIY|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix gi|15825961|pdb|1JJ2|S Chain S, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|20151006|pdb|1KQS|S Chain S, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis gi|22218940|pdb|1K8A|U Chain U, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22218974|pdb|1K9M|U Chain U, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219017|pdb|1KD1|U Chain U, Co-Crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219344|pdb|1M1K|U Chain U, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|24159039|pdb|1M90|U Chain U, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit gi|28373737|pdb|1ML5|UU Chain u, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi|34811136|pdb|1K73|U Chain U, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|34811166|pdb|1KC8|U Chain U, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit gi|34811205|pdb|1N8R|U Chain U, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M gi|34811235|pdb|1NJI|U Chain U, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit gi|37927919|pdb|1Q7Y|U Chain U, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit gi|37927954|pdb|1Q81|U Chain U, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. gi|37927990|pdb|1Q82|U Chain U, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit gi|37928026|pdb|1Q86|U Chain U, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit. gi|39654691|pdb|1QVF|S Chain S, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|39654724|pdb|1QVG|S Chain S, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|55670554|pdb|1W2B|S Chain S, Trigger Factor Ribosome Binding Domain In Complex With 50s gi|66361037|pdb|1YL3|U Chain U, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordinates For The Small Subunit Are In The Pdb Entry 1yl4. gi|88192274|pdb|2B66|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400 gi|88192337|pdb|2B9N|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf2, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400. gi|88192392|pdb|2B9P|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Complex With Trnas And Mrna With A Stop Codon In The A-Site. This File Contains The 50s Subunit From A Crystal Structure Of The Ribosome In Complex With Trnas And Mrna With A Stop Codon In The A-Site And Is Described In Remark 400. gi|228311930|pdb|3CXC|S Chain S, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui gi|228312161|pdb|3G4S|T Chain T, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit gi|228312217|pdb|3G6E|T Chain T, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit gi|228312253|pdb|3G71|T Chain T, Co-Crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit Length = 119 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +V G+ V V G FA G V NVD +K+ +HVE Sbjct: 37 QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 75 >gi|307354264|ref|YP_003895315.1| NusG antitermination factor [Methanoplanus petrolearius DSM 11571] gi|307157497|gb|ADN36877.1| NusG antitermination factor [Methanoplanus petrolearius DSM 11571] Length = 158 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 29/152 (19%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ + E+ V++I L+ + ++ GYV Sbjct: 11 YAIKTTAKQERTVVDNIIK-----ALEDHDEINVVAVMAPDELK-------------GYV 52 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 L+++ +++ + GE + ++ + Sbjct: 53 LVESPDPIARIEQLREMVPNARTVVKGETSFHEVEH-----------FLEPKPVVSGIDE 101 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + GPF IVK VD K + VE+ Sbjct: 102 GTIVELIAGPFKGEKAIVKRVDTSKEEITVEL 133 >gi|223935505|ref|ZP_03627422.1| NusG antitermination factor [bacterium Ellin514] gi|223895915|gb|EEF62359.1| NusG antitermination factor [bacterium Ellin514] Length = 120 Score = 38.1 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 +P WY + E A ++ + E+ P RV + + F Sbjct: 5 SPAWYCARTKPKHEHIAAANLLRHAN--------VEVFNPRLRVEKATRRGVIRVSEPLF 56 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQ 115 P Y+ ++ V+ +K+ + + + ++DS + + + + Sbjct: 57 PCYIFVRCVIEEKLNDI-RYANGISTIVHFANRIPHISDSVVVELQEHFKEMRE 109 >gi|113197964|gb|AAI21739.1| T54l protein [Danio rerio] Length = 339 Score = 38.1 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGR 162 + ++ G V V G G ++ VD + RV V++ I G+ Sbjct: 240 DEKGKEDEALVLGPGGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGK 290 >gi|323141745|ref|ZP_08076617.1| TonB-dependent receptor plug domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413782|gb|EFY04629.1| TonB-dependent receptor plug domain protein [Phascolarctobacterium sp. YIT 12067] Length = 642 Score = 38.1 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 33/139 (23%), Gaps = 2/139 (1%) Query: 22 IGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKD 81 I ++ + + + R F L + Sbjct: 393 IREQIIEDMVKDQKVFLPQFQALYKVEDNSSWYMNIGRAFQMPALSDTFKKSGAMYQQVS 452 Query: 82 TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFA--SF 139 + G ++ + + + E G+ + V+ G F F Sbjct: 453 GKNLKPQDGWNYETGYKIINDNNSWKFSLYYMDFKNMFGWEKENGQDIRVNKGKFKNVGF 512 Query: 140 NGIVKNVDEEKSRVHVEVV 158 ++ +K + +V Sbjct: 513 EADYTSILSDKFKANVGFS 531 >gi|13124815|sp|O59429|RL24_PYRHO RecName: Full=50S ribosomal protein L24P Length = 121 Score = 38.1 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G F + G V VD ++ R++VE Sbjct: 45 PVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 79 >gi|150003289|ref|YP_001298033.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|150004094|ref|YP_001298838.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|149931713|gb|ABR38411.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|149932518|gb|ABR39216.1| putative transcriptional regulator [Bacteroides vulgatus ATCC 8482] Length = 155 Score = 38.1 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLG 90 + E IP E + R G K R + ++ + + + T KVI + Sbjct: 1 MKKDKIETYIPCEETLMERNGIKKKLRRPVINSLMFFRSTVCRALEVQRQFTNKVILYTR 60 Query: 91 TGEN---PSPVTDSEIEHIMNQVEAAVQRPVS----SVFFEVGERVCVSDGPFASFNGIV 143 P + D E+ M + Q + F+ GERV V DG F G++ Sbjct: 61 QKGLKRLPLAIPDREMNIFMLVTSSGEQGMEYFGEDNSKFQQGERVRVIDGKFKGAEGVI 120 Query: 144 KNVDEEKSRVHVEV 157 + + R+ V V Sbjct: 121 CRI-RKNRRLVVTV 133 >gi|221128905|ref|XP_002156442.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 395 Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 105 HIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 + + + + +S+ + G V + +GP +G + +VDE+ +R+ V++ I Sbjct: 229 RVRHIKGLSEEVKDNSIGYFPGCYVYIQNGPHKDLSGKIISVDEDTTRISVQLRI 283 >gi|53713877|ref|YP_099869.1| putative transcriptional regulatory protein UpxY-like protein [Bacteroides fragilis YCH46] gi|60682085|ref|YP_212229.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|253567131|ref|ZP_04844582.1| UpaY [Bacteroides sp. 3_2_5] gi|255009543|ref|ZP_05281669.1| putative transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|265764220|ref|ZP_06092788.1| UpaY [Bacteroides sp. 2_1_16] gi|313147318|ref|ZP_07809511.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|52216742|dbj|BAD49335.1| putative transcriptional regulatory protein UpxY homolog [Bacteroides fragilis YCH46] gi|60493519|emb|CAH08306.1| putative transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|251944255|gb|EES84764.1| UpaY [Bacteroides sp. 3_2_5] gi|263256828|gb|EEZ28174.1| UpaY [Bacteroides sp. 2_1_16] gi|301163555|emb|CBW23106.1| putative transcriptional regulatory protein [Bacteroides fragilis 638R] gi|313136085|gb|EFR53445.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 172 Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 17/166 (10%) Query: 1 MTPR---WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSE 57 M+ + W+ + + E +++ + E +P++ V+ K R+ E Sbjct: 1 MSQQQEYWFAARTRKDQELTTRDALEK---------IGVEYFLPTQFVIRQLKYRRRRVE 51 Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP 117 + + A + ++ + + V Sbjct: 52 VPVIRNLIFVHATKEFACAIANEYGVRLFYMRDFDTKSMLIVPDKQMKDFMFVMNLDPAA 111 Query: 118 VSSVF--FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG 161 V F VG +V V G F G + ++ +R +V + I G Sbjct: 112 VILNDDCFAVGTKVQVIKGDFCGVEGELASLS---NRTYVTIRIRG 154 >gi|298207738|ref|YP_003715917.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559] gi|83850376|gb|EAP88244.1| ribosomal protein L24 [Croceibacter atlanticus HTCC2559] Length = 104 Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + +VG+ V V G G ++ V EK++ VE Sbjct: 4 KLKIKVGDTVRVIAGASKGQEGKIQKVLVEKNKAIVE 40 >gi|73544587|ref|XP_848188.1| transcription elongation regulator-like protein [Leishmania major strain Friedlin] gi|321438541|emb|CBZ12300.1| transcription elongation regulator-like protein [Leishmania major strain Friedlin] Length = 700 Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 22/159 (13%) Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80 +T +P E V + F Y+ D+ + +K Sbjct: 301 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGVREMENSYIWGDLHF-DREGYLLK 359 Query: 81 DTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135 + G + ++ + + A + +G+ V V+ G Sbjct: 360 TVSTRMVISGAQLEQPSTEELARFYNDQREKVERALKAAEAAAQVPHISIGDSVRVTTGQ 419 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+V+NV + + + GRV P+++ QVE Sbjct: 420 LRNTIGVVENVFTNTNTAVLTCTVPGRVQPIKV---QVE 455 >gi|308805314|ref|XP_003079969.1| probable transcription elongation factor (ISS) [Ostreococcus tauri] gi|116058426|emb|CAL53615.1| probable transcription elongation factor (ISS) [Ostreococcus tauri] Length = 926 Score = 38.1 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + F G++V + +G + G+V+ VD + RV V Sbjct: 315 DLKFMTGDQVLIVEGDLRNLEGVVERVDPD-GRVVVM 350 >gi|315427719|dbj|BAJ49315.1| large subunit ribosomal protein L24 [Candidatus Caldiarchaeum subterraneum] Length = 122 Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 V G+ V V G F + G VK VD ++ +VE V I Sbjct: 45 VRLRQGDTVKVIKGTFKNIEGKVKRVDVKRQMAYVENVSI 84 >gi|116623968|ref|YP_826124.1| hypothetical protein Acid_4880 [Candidatus Solibacter usitatus Ellin6076] gi|116227130|gb|ABJ85839.1| hypothetical protein Acid_4880 [Candidatus Solibacter usitatus Ellin6076] Length = 104 Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 V G+RV + G A G+V + R+ + + + R +E+ Sbjct: 25 VKPRAGQRVRIKGGALAGVEGVVIGF-RQSLRLILSITLLQRSVLLEID 72 >gi|159905646|ref|YP_001549308.1| 50S ribosomal protein L24P [Methanococcus maripaludis C6] gi|159887139|gb|ABX02076.1| ribosomal protein L24 [Methanococcus maripaludis C6] Length = 119 Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +S+ + G+ V V G F G V VD ++ VE Sbjct: 43 NSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVE 80 >gi|320101355|ref|YP_004176947.1| 50S ribosomal protein L24P [Desulfurococcus mucosus DSM 2162] gi|319753707|gb|ADV65465.1| LSU ribosomal protein L24P [Desulfurococcus mucosus DSM 2162] Length = 133 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD ++ R+ VE Sbjct: 50 GDTVRIMRGEFKGHEGKVVEVDLKRVRLFVE 80 >gi|254882990|ref|ZP_05255700.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641831|ref|ZP_07996509.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_40A] gi|254835783|gb|EET16092.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386558|gb|EFV67459.1| transcription termination/antitermination factor NusG [Bacteroides sp. 3_1_40A] Length = 203 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 19/140 (13%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 WY ++ EKKA + I ++ + LV RK + + F Sbjct: 69 HWYALRTTYGREKKAYDYIKVKVELLSIVRLVDG----------KRKTVEESRLPNIFFA 118 Query: 64 YV----LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-- 117 Y + V + ++ + E + + + + A Sbjct: 119 YGTEEEIKSFVYDNVNLPYLRFYYRYFHISKKVEKEPLIVSNNQIESLRIICKADADDII 178 Query: 118 ---VSSVFFEVGERVCVSDG 134 F+ G+ V + G Sbjct: 179 VSIDEVQKFQKGQAVRILKG 198 >gi|238899397|ref|YP_002925080.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467159|gb|ACQ68932.1| transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 149 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 9/118 (7%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVN--SER 58 M +WY+ S C ++ L + PS + R RK Sbjct: 1 MEKKWYLTCHKSGCSNLYK-------AQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIE 53 Query: 59 RFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR 116 F GY+ I+ + + P+ ++ ++ IM Sbjct: 54 PLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMRFPLCMNDE 111 >gi|218884475|ref|YP_002428857.1| 50S ribosomal protein L24P [Desulfurococcus kamchatkensis 1221n] gi|218766091|gb|ACL11490.1| 50S ribosomal protein L24P [Desulfurococcus kamchatkensis 1221n] Length = 133 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 G+ V + G F G V VD RV V + Sbjct: 50 GDTVRIMRGEFKGHEGKVVEVDL--KRVRVFIE 80 >gi|55378374|ref|YP_136224.1| 50S ribosomal protein L24P [Haloarcula marismortui ATCC 43049] gi|132816|sp|P10972|RL24_HALMA RecName: Full=50S ribosomal protein L24P; AltName: Full=Hl15; AltName: Full=Hl16; AltName: Full=Hmal24 gi|50513489|pdb|1S72|T Chain T, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|66360803|pdb|1YHQ|T Chain T, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360836|pdb|1YI2|T Chain T, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360869|pdb|1YIJ|T Chain T, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360902|pdb|1YIT|T Chain T, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360935|pdb|1YJ9|T Chain T, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 gi|66360968|pdb|1YJN|T Chain T, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66361001|pdb|1YJW|T Chain T, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|83753144|pdb|1VQ4|T Chain T, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753176|pdb|1VQ5|T Chain T, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753208|pdb|1VQ6|T Chain T, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753240|pdb|1VQ7|T Chain T, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753271|pdb|1VQ8|T Chain T, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753303|pdb|1VQ9|T Chain T, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753334|pdb|1VQK|T Chain T, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui gi|83753365|pdb|1VQL|T Chain T, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753396|pdb|1VQM|T Chain T, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753428|pdb|1VQN|T Chain T, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753459|pdb|1VQO|T Chain T, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui gi|83753491|pdb|1VQP|T Chain T, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|145580191|pdb|2OTJ|T Chain T, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui gi|145580222|pdb|2OTL|T Chain T, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui gi|171848856|pdb|2QA4|T Chain T, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit gi|188596021|pdb|3CC2|T Chain T, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins gi|188596052|pdb|3CC4|T Chain T, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|188596083|pdb|3CC7|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u gi|188596114|pdb|3CCE|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a gi|188596145|pdb|3CCJ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u gi|188596176|pdb|3CCL|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model. gi|188596207|pdb|3CCM|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u gi|188596238|pdb|3CCQ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u gi|188596269|pdb|3CCR|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model. gi|188596300|pdb|3CCS|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a gi|188596331|pdb|3CCU|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c gi|188596362|pdb|3CCV|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a gi|188596393|pdb|3CD6|T Chain T, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With Cc- Puromycin gi|194368723|pdb|3CPW|S Chain S, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581927|pdb|3CMA|T Chain T, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581960|pdb|3CME|T Chain T, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|208435513|pdb|2QEX|T Chain T, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit gi|290790055|pdb|3I55|T Chain T, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit gi|290790086|pdb|3I56|T Chain T, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit gi|43615|emb|CAA39019.1| ribosomal protein HmaL24 [Haloarcula marismortui] gi|55231099|gb|AAV46518.1| 50S ribosomal protein L24P [Haloarcula marismortui ATCC 43049] Length = 120 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + +V G+ V V G FA G V NVD +K+ +HVE Sbjct: 34 EEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 >gi|300710386|ref|YP_003736200.1| 50S ribosomal protein L24P [Halalkalicoccus jeotgali B3] gi|299124069|gb|ADJ14408.1| 50S ribosomal protein L24P [Halalkalicoccus jeotgali B3] Length = 118 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 93 ENPSPVTDSEIEHIMNQVEA---AVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + E ++ + VG+ V + G FA G V VD + Sbjct: 10 NDAQNAPLHERHKQLHATLDGDLREEHGTRRTRVNVGDTVQIMRGDFAGETGEVVAVDLK 69 Query: 150 KSRVHVE 156 + VHVE Sbjct: 70 RGVVHVE 76 >gi|14591523|ref|NP_143604.1| 50S ribosomal protein L24P [Pyrococcus horikoshii OT3] gi|3258199|dbj|BAA30882.1| 124aa long hypothetical 50S ribosomal protein L24 [Pyrococcus horikoshii OT3] Length = 124 Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G F + G V VD ++ R++VE Sbjct: 48 PVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVE 82 >gi|304314265|ref|YP_003849412.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str. Marburg] gi|302587724|gb|ADL58099.1| 50S ribosomal protein L24P [Methanothermobacter marburgensis str. Marburg] Length = 117 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S+ G++V V G F G V+ VD ++ RV+VE Sbjct: 38 RRSLPVRKGDKVEVLRGDFKGHEGKVEKVDLKRYRVYVE 76 >gi|228472133|ref|ZP_04056899.1| ribosomal protein L24 [Capnocytophaga gingivalis ATCC 33624] gi|228276336|gb|EEK15060.1| ribosomal protein L24 [Capnocytophaga gingivalis ATCC 33624] Length = 104 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G V VD EK+R VE Sbjct: 1 MIKLKIKAGDTVQVIAGDHKGEKGKVLKVDREKNRAIVE 39 >gi|218132117|ref|ZP_03460921.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697] gi|317477643|ref|ZP_07936857.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|217985686|gb|EEC52027.1| hypothetical protein BACEGG_03745 [Bacteroides eggerthii DSM 20697] gi|316906191|gb|EFV27931.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 177 Score = 37.7 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 6/158 (3%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 W+ + E +S+ S LD + +P+ VVS K R+ SE Sbjct: 6 KYWFAARTRDKQEFAICKSLSRLKSEEHLD---VDYYLPTRIVVSQLKYRRKRSEVPVIR 62 Query: 63 GYVLIKAV-MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 V I+ T + + V D ++ M ++ Sbjct: 63 NLVFIRTTKQTACDLSNVYGVRLFYMKDLFTRSMLVVPDKQMSDFMFVMDLNPDGVSFDN 122 Query: 122 -FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 VG+RV V G G V + ++ V + + Sbjct: 123 GSLVVGDRVRVVKGDLTGVEGEVAT-NANRTYVVIRIK 159 >gi|11499498|ref|NP_070739.1| 50S ribosomal protein L24P [Archaeoglobus fulgidus DSM 4304] gi|3914715|sp|O28365|RL24_ARCFU RecName: Full=50S ribosomal protein L24P gi|2648629|gb|AAB89339.1| LSU ribosomal protein L24P (rpl24P) [Archaeoglobus fulgidus DSM 4304] Length = 120 Score = 37.7 bits (86), Expect = 0.64, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + G++V + G FA G V VD ++ R+ V Sbjct: 46 IRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITV 80 >gi|167045425|gb|ABZ10080.1| putative KOW motif protein [uncultured marine crenarchaeote HF4000_APKG10F15] Length = 129 Score = 37.7 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 N+++ + + + V V + GPF + +++EK V ++ PV Sbjct: 59 NEIDKYLIKKSTVSELAVENTVEIIAGPFKGMKATITRLEKEKEEATVILLDATYQLPVT 118 Query: 168 LAYNQVEKI 176 + N ++ + Sbjct: 119 VDANYLKLV 127 >gi|57641465|ref|YP_183943.1| 50S ribosomal protein L24P [Thermococcus kodakarensis KOD1] gi|73914096|sp|Q5JJF9|RL24_PYRKO RecName: Full=50S ribosomal protein L24P gi|57159789|dbj|BAD85719.1| LSU ribosomal protein L24P [Thermococcus kodakarensis KOD1] Length = 121 Score = 37.7 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V V G F G V VD + R+HVE Sbjct: 45 PIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVE 79 >gi|319789505|ref|YP_004151138.1| MutS2 family protein [Thermovibrio ammonificans HB-1] gi|317114007|gb|ADU96497.1| MutS2 family protein [Thermovibrio ammonificans HB-1] Length = 756 Score = 37.7 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+ V V G G V +VD + R V++ VE+ Q+ Sbjct: 609 EPKPGDTVKVEPG---GRKGKVVSVDAGRKRAKVQIG----AVTVEVKLGQLR 654 >gi|326433915|gb|EGD79485.1| hypothetical protein PTSG_12984 [Salpingoeca sp. ATCC 50818] Length = 1092 Score = 37.7 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++A + + ++ + P + ++ R Y+ Sbjct: 221 WAVRCKPGGEQEAAIKLMRKAMQAAMKGE------PLAIKSVIGYRQQRVVGGR---SYI 271 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A + V H I +++ G+ + + E + +V+ + + Sbjct: 272 YVEAYSREHVKHAIAGIEELVY----GQWTQELVEMEARPALLRVK------KRKINVKP 321 Query: 126 GERVCVSDGPFASFNGIVKNVDE--EKSRVHVEV 157 + V + G +A+ V V+ + RV V + Sbjct: 322 NQWVRIKRGIYANDLAKVVRVNATVDPPRVEVHL 355 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV----- 155 E+ + P F VG+RV V G + G + +++ +V + Sbjct: 440 FEMTEDAHVEMELPDEPSLQPAFAVGDRVEVVGGDLKNLTGEILSINASSQQVEIRPDSD 499 Query: 156 EVVIFGRVTPVELAYNQVEK 175 E+ G +T + L ++V K Sbjct: 500 ELKKTG-ITRIPLPISEVRK 518 >gi|196006151|ref|XP_002112942.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens] gi|190584983|gb|EDV25052.1| hypothetical protein TRIADDRAFT_56584 [Trichoplax adhaerens] Length = 501 Score = 37.7 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%) Query: 102 EIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 E E + AA S+ F G V V GP A G V+ +D + R+ V + I Sbjct: 225 EPERTSDVCFAAKMVTTISLGFARGVHVMVVAGPHADLYGKVEGIDGDNGRIFVALAI 282 >gi|320585909|gb|EFW98588.1| kow motif domain containing protein [Grosmannia clavigera kw1407] Length = 391 Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 VG+RV V++GP G VK + E V + Sbjct: 142 VGDRVVVTEGPLKGAIGAVKELRPEHGTVTL 172 >gi|30680726|ref|NP_192575.2| GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor [Arabidopsis thaliana] Length = 1029 Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 G V + GPF + G V V RV +E+ I Sbjct: 704 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 737 >gi|261402345|ref|YP_003246569.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7] gi|261369338|gb|ACX72087.1| ribosomal protein L24 [Methanocaldococcus vulcanius M7] Length = 120 Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +++ G+ V + G F G V VD ++ R+HVE Sbjct: 43 NAIPVRKGDVVRIMRGNFKGLEGEVVKVDLKRYRIHVE 80 >gi|15678045|ref|NP_275159.1| 50S ribosomal protein L24P [Methanothermobacter thermautotrophicus str. Delta H] gi|3122709|sp|O26122|RL24_METTH RecName: Full=50S ribosomal protein L24P gi|2621042|gb|AAB84515.1| ribosomal protein L26 (E.coli ) [Methanothermobacter thermautotrophicus str. Delta H] Length = 117 Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S+ G++V + G F G V+ VD ++ RV+VE Sbjct: 38 RRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVE 76 >gi|75207701|sp|Q9STN3|SPT51_ARATH RecName: Full=Putative transcription elongation factor SPT5 homolog 1 gi|5731756|emb|CAB52557.1| putative protein [Arabidopsis thaliana] gi|7267476|emb|CAB77960.1| putative protein [Arabidopsis thaliana] Length = 1054 Score = 37.3 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 G V + GPF + G V V RV +E+ I Sbjct: 704 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 737 >gi|302143191|emb|CBI20486.3| unnamed protein product [Vitis vinifera] Length = 236 Score = 37.3 bits (85), Expect = 0.80, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 + E P P+ + + + + +VG+ V + G G + + Sbjct: 79 LAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIF 138 Query: 148 EEKSRVHV 155 S V V Sbjct: 139 RHNSTVVV 146 >gi|284162449|ref|YP_003401072.1| ribosomal protein L24 [Archaeoglobus profundus DSM 5631] gi|284012446|gb|ADB58399.1| ribosomal protein L24 [Archaeoglobus profundus DSM 5631] Length = 120 Score = 37.3 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + G++V + G FA G V VD +K R++V Sbjct: 46 IRIRKGDKVRIMRGEFAGHEGKVVEVDMKKIRIYV 80 >gi|297809015|ref|XP_002872391.1| hypothetical protein ARALYDRAFT_327088 [Arabidopsis lyrata subsp. lyrata] gi|297318228|gb|EFH48650.1| hypothetical protein ARALYDRAFT_327088 [Arabidopsis lyrata subsp. lyrata] Length = 1051 Score = 37.3 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 G V + GPF + G V V RV +E+ I Sbjct: 701 GTTVKIRLGPFKGYRGPVVEVKGNSVRVELEMKI 734 >gi|115397871|ref|XP_001214527.1| hypothetical protein ATEG_05349 [Aspergillus terreus NIH2624] gi|114192718|gb|EAU34418.1| hypothetical protein ATEG_05349 [Aspergillus terreus NIH2624] Length = 1075 Score = 37.3 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 91 TGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 TG + + + + + + M +G+ V V GPF GIVK+ + + Sbjct: 732 TGPDLTKMNPALMRNGMPGAGGMGPPKTFGRDRMIGKTVMVRKGPFKGLVGIVKDSSDAQ 791 Query: 151 SRVHV-----EVVI 159 +RV + V I Sbjct: 792 ARVELHSKNKLVSI 805 >gi|320035888|gb|EFW17828.1| transcription elongation factor spt5 [Coccidioides posadasii str. Silveira] Length = 1051 Score = 37.3 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++ V +I R+ + GYV Sbjct: 232 WAVKCRPGKEREIVFNIMKRIEERHPASRNPIRITSAFERGGT------------MSGYV 279 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A V + + V + ++ E+ ++ R S + Sbjct: 280 YIEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 327 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + G + ++ V+ V V + Sbjct: 328 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 359 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 VG+ V + GP+ GIVK D VE+ +V PVE Sbjct: 752 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 795 >gi|303321271|ref|XP_003070630.1| KOW motif containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110326|gb|EER28485.1| KOW motif containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1051 Score = 37.3 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++ V +I R+ + GYV Sbjct: 232 WAVKCRPGKEREIVFNIMKRIEERHPASRNPIRITSAFERGGT------------MSGYV 279 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A V + + V + ++ E+ ++ R S + Sbjct: 280 YIEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 327 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + G + ++ V+ V V + Sbjct: 328 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 359 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 VG+ V + GP+ GIVK D VE+ +V PVE Sbjct: 752 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 795 >gi|218130865|ref|ZP_03459669.1| hypothetical protein BACEGG_02460 [Bacteroides eggerthii DSM 20697] gi|217987209|gb|EEC53540.1| hypothetical protein BACEGG_02460 [Bacteroides eggerthii DSM 20697] Length = 161 Score = 37.3 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%) Query: 31 LDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIK---AVMTDKVYHTIKDTPKVIG 87 LD E IP +R R+V V I+ A + + + + P Sbjct: 7 LDKADIENFIPMHYEYIMRNERRVRKLVPAIHNLVFIRSTRACIDEIKNNYALNIPVRYI 66 Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE----VGERVCVSDGPFASFNGIV 143 P + D+++ + + + E G +V ++ G F G Sbjct: 67 MNRETRQPVIIPDAQMRSFILVAGTYDEAVIYVEPEELKLVKGTKVRITGGVFEGAVGEF 126 Query: 144 KNVDEEKSRVHVEVV 158 + ++ RV V + Sbjct: 127 VRLRHDR-RVVVNIE 140 >gi|156936529|ref|YP_001440444.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC BAA-894] gi|156534783|gb|ABU79608.1| hypothetical protein ESA_pESA2p06575 [Cronobacter sakazakii ATCC BAA-894] Length = 149 Score = 37.3 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 11/105 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFF 61 +WY++ S + I R+SR + L E+ P V+ R + + F Sbjct: 3 KWYVLYCNS-------QDI-QRISRRT-EDLGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 53 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 P Y+ ++ + TI P GF+ G P V +S I I Sbjct: 54 PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 98 >gi|224540174|ref|ZP_03680713.1| hypothetical protein BACCELL_05087 [Bacteroides cellulosilyticus DSM 14838] gi|224518208|gb|EEF87313.1| hypothetical protein BACCELL_05087 [Bacteroides cellulosilyticus DSM 14838] Length = 179 Score = 37.3 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 16/147 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 W+ V+V E + E IP R V+ GR++ Sbjct: 8 HWFAVRVTYGRELALKAFLDEEK---------IENFIPMRRDYVVKDGRRICKFVPAVHN 58 Query: 64 YVLIKAVM--TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 V I++ D + + + + + + V + V V Sbjct: 59 LVFIRSTRKRIDTLKDKAGMNIPIRYIMNREHHLPVIVPDDQMRSFILVAGTYEESVIYV 118 Query: 122 FFEV-----GERVCVSDGPFASFNGIV 143 G++V V G F G Sbjct: 119 EPAELQLVRGQKVRVMGGVFEGAVGEF 145 >gi|194227910|ref|XP_001495277.2| PREDICTED: G patch domain and KOW motifs [Equus caballus] Length = 476 Score = 37.3 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 + G V V GP G V+ +D + R V + + RV + Sbjct: 230 QEKDKEDQPQGLVPGGAVVVRSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTL 284 >gi|15668644|ref|NP_247442.1| 50S ribosomal protein L24P [Methanocaldococcus jannaschii DSM 2661] gi|1710522|sp|P54038|RL24_METJA RecName: Full=50S ribosomal protein L24P gi|1591169|gb|AAB98456.1| LSU ribosomal protein L24P (rplX) [Methanocaldococcus jannaschii DSM 2661] Length = 120 Score = 37.3 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +++ G+ V + G F G V VD ++ R++VE Sbjct: 43 NAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVE 80 >gi|212694747|ref|ZP_03302875.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855] gi|212662726|gb|EEB23300.1| hypothetical protein BACDOR_04279 [Bacteroides dorei DSM 17855] Length = 198 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 14/162 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTE--ITIPSERVVSVRKGRKVNSERRF 60 W+ ++V K +I L + + + + + + + V + F Sbjct: 26 KHWFALKV---FYNKVF-AIEELLLKKKIKCYIPCETVKVLKQDGTKKNVRKPVINSLLF 81 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR---- 116 F I + + + P + + E+ M + + Sbjct: 82 FHSETYIA---KEIQKILTDKVILYTRQIDFKKIPLAIPEREMNIFMLVTSSGEKGLEYF 138 Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + F G+ V V DG F G + + + R+ + V Sbjct: 139 DTDNPKFYQGDHVKVIDGTFKGAEGYICRIKKNH-RLIITVH 179 >gi|256819993|ref|YP_003141272.1| 50S ribosomal protein L24 [Capnocytophaga ochracea DSM 7271] gi|256581576|gb|ACU92711.1| ribosomal protein L24 [Capnocytophaga ochracea DSM 7271] Length = 104 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V + G G V VD EK+R VE Sbjct: 1 MMKLKIKTGDTVKIIAGEEKGKEGKVLRVDREKNRAIVE 39 >gi|119180397|ref|XP_001241674.1| hypothetical protein CIMG_08837 [Coccidioides immitis RS] Length = 1048 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++ V +I R+ + GYV Sbjct: 229 WAVKCRPGKEREIVFNIMKRIEERHSASRNPIRITSAFERGGT------------MSGYV 276 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V + + V + ++ E+ ++ R S + Sbjct: 277 YVEARKQADVMDALDNLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 324 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + G + ++ V+ V V + Sbjct: 325 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 356 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 167 VG+ V + GP+ GIVK D VE+ +V PVE Sbjct: 749 DRTVGKTVTIRKGPYKGLLGIVK--DTTDDIARVELHSVSKVVPVE 792 >gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus nasoniae] Length = 245 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 94 NPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 E I+ + A + VG+ + + DG + F G + +++ ++ Sbjct: 7 RIYHPNPLESGAIIQLSDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEANKKSVKI 66 Query: 154 HVEV-VIFGRVTPVELAYNQV----EKI 176 + + I R +P++L QV EK+ Sbjct: 67 QLGLATIANRESPLDLHLGQVISRGEKM 94 >gi|189466345|ref|ZP_03015130.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM 17393] gi|189434609|gb|EDV03594.1| hypothetical protein BACINT_02719 [Bacteroides intestinalis DSM 17393] Length = 115 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 11/90 (12%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WYIV E+K ++ L+ + P + + G+ FF G Sbjct: 17 WYIVYTAPRLERKLMQ---------HLNVAGYKTFCPMQTIYVNWDGKMKEIIVPFFSGC 67 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGEN 94 V ++ + D + K +GT Sbjct: 68 VFVEGDLKDIAPVVA--SQKAAFLVGTDGK 95 >gi|260800079|ref|XP_002594964.1| hypothetical protein BRAFLDRAFT_174745 [Branchiostoma floridae] gi|229280202|gb|EEN50975.1| hypothetical protein BRAFLDRAFT_174745 [Branchiostoma floridae] Length = 474 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 98 VTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V +E ++ ++ + G V + GP G V++++ E +R V + Sbjct: 197 VRPTEDKNQRPLKPGETRKEEDTTGLVPGAHVLILAGPHRDMYGKVESLNAETARAVVSL 256 Query: 158 VIFGRVTPVELAYNQV 173 + G+ + QV Sbjct: 257 ALGGQTLDISENALQV 272 >gi|317133339|ref|YP_004092653.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3] gi|315471318|gb|ADU27922.1| hypothetical protein Ethha_2426 [Ethanoligenens harbinense YUAN-3] Length = 279 Score = 37.0 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 18/165 (10%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ WYI+ S + + L R + + P+ + + E+ Sbjct: 1 MSKAWYII--ASRK----QDELELLLDRKDI-----DYFNPTCLQARTTRQKLQLQEQNI 49 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLG--TGENPSPVTDSEIEHIMNQVEAAVQRPV 118 GYV ++ + Y+ + + +N T E E + + AA Sbjct: 50 MGGYVFAYLDLSQEYYYLKHNEMFYGNVIAILGMDNGIAGTVDEDEVVEWRQLAAAVSVP 109 Query: 119 SSVFFEVGERVCVSDGPFASF-NGIVKNVDEEKSRVHVEVVIFGR 162 + F G + +++ + + + K +E+++ G+ Sbjct: 110 LRLRFTKG-KYRITN---KGLHSARIVHYYRRKLSASIEIMVAGK 150 >gi|289193203|ref|YP_003459144.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22] gi|288939653|gb|ADC70408.1| ribosomal protein L24 [Methanocaldococcus sp. FS406-22] Length = 120 Score = 37.0 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +++ G+ V + G F G V VD ++ R++VE Sbjct: 43 NAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVE 80 >gi|315040279|ref|XP_003169517.1| transcription elongation factor spt5 [Arthroderma gypseum CBS 118893] gi|311346207|gb|EFR05410.1| transcription elongation factor spt5 [Arthroderma gypseum CBS 118893] Length = 1082 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 763 VGKTVHIRKGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 810 >gi|86141151|ref|ZP_01059697.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217] gi|85831710|gb|EAQ50165.1| ribosomal protein L24 [Leeuwenhoekiella blandensis MED217] Length = 103 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + +VG+ V V G G V+ V ++K++ VE Sbjct: 1 MTKLKIKVGDNVKVIAGDHKGQEGKVQRVIKDKNKAIVE 39 >gi|322372157|ref|ZP_08046698.1| ribosomal protein L24 [Haladaptatus paucihalophilus DX253] gi|320548166|gb|EFW89839.1| ribosomal protein L24 [Haladaptatus paucihalophilus DX253] Length = 118 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 21/43 (48%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + SV G+ V V G FA G V +VD +K+ V VE Sbjct: 34 EEFDQRSVRVNAGDTVEVMRGDFAGEEGEVTSVDLKKAVVFVE 76 >gi|213962784|ref|ZP_03391044.1| ribosomal protein L24 [Capnocytophaga sputigena Capno] gi|213954441|gb|EEB65763.1| ribosomal protein L24 [Capnocytophaga sputigena Capno] Length = 103 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + G+ V + G G V VD EK+R VE Sbjct: 1 MKLKIKTGDTVKIIAGEEKGKEGKVLRVDREKNRAIVE 38 >gi|225010528|ref|ZP_03700999.1| ribosomal protein L24 [Flavobacteria bacterium MS024-3C] gi|225005357|gb|EEG43308.1| ribosomal protein L24 [Flavobacteria bacterium MS024-3C] Length = 104 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + +VG+ V V G G V +VD +KSR VE Sbjct: 1 MTKIKIKVGDTVKVIAGDHKGDQGKVVSVDLKKSRAIVE 39 >gi|260585154|ref|YP_003212728.1| Transcriptional activator rfaH [Cronobacter turicensis z3032] gi|260219336|emb|CBA34689.1| Transcriptional activator rfaH [Cronobacter turicensis z3032] Length = 156 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSER--RFF 61 +WY++ S + I R+SR + + E+ P V+ R + + F Sbjct: 10 KWYVLYCNS-------QDI-QRISRRA-EDIGVEVFCPRYIKVTPRTDCRAVRQEEKPLF 60 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHI 106 P Y+ ++ + TI P GF+ G P V +S I I Sbjct: 61 PSYLFLRFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 105 >gi|256810635|ref|YP_003128004.1| ribosomal protein L24 [Methanocaldococcus fervens AG86] gi|256793835|gb|ACV24504.1| ribosomal protein L24 [Methanocaldococcus fervens AG86] Length = 120 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +++ G+ V + G F G V VD ++ R++VE Sbjct: 43 NAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIYVE 80 >gi|400989|sp|Q02764|RK24_TOBAC RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor gi|170273|gb|AAA34086.1| ribosomal protein L24 [Nicotiana tabacum] gi|170324|gb|AAA34114.1| ribosomal protein L24 [Nicotiana tabacum] Length = 187 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 24/68 (35%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 + + E P + + + + + ++G+ V + G G + + Sbjct: 29 LVKSTEGPCLIQAKLKRWERKECKPNSLPVLHKMHVKLGDTVKIISGHDKGKVGEITEII 88 Query: 148 EEKSRVHV 155 + S+V V Sbjct: 89 KHNSKVVV 96 >gi|218534697|ref|YP_002424459.1| similar to transcriptional activator [Yersinia pseudotuberculosis] gi|218473166|emb|CAQ76594.1| similar to transcriptional activator [Yersinia pseudotuberculosis] Length = 152 Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 44/159 (27%), Gaps = 22/159 (13%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRK--VNSERRFF 61 WY+ E + L L + P R+ R R F Sbjct: 3 NWYLACHQPGKETLYKAQLE-------LSRLHIDSFCPLIRLSRPRPDRPSGRLIIEPLF 55 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 GY+ I+ + V F+ G + P+ + IE +M ++ Sbjct: 56 SGYIFIQFDPEITHTTKLTALSSVSHFVKFGCDIRPIPKTVIESLMKLPLCPTEQD---- 111 Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 V G F + V + R + + + Sbjct: 112 ---------VIAGRFKEKIVAITRVSNKHERTVMFLALM 141 >gi|14600658|ref|NP_147176.1| 50S ribosomal protein L24P [Aeropyrum pernix K1] gi|6685877|sp|Q9YF83|RL24_AERPE RecName: Full=50S ribosomal protein L24P gi|5103997|dbj|BAA79313.1| 50S ribosomal protein L24P [Aeropyrum pernix K1] Length = 132 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 S+ G++V V G F G V VD + R+++ Sbjct: 44 RSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYI 80 >gi|159042388|ref|YP_001541640.1| ribosomal protein L24 [Caldivirga maquilingensis IC-167] gi|218546937|sp|A8MB21|RL24_CALMQ RecName: Full=50S ribosomal protein L24P gi|157921223|gb|ABW02650.1| ribosomal protein L24 [Caldivirga maquilingensis IC-167] Length = 143 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + VG+ V + G F G V VD ++ R++V Sbjct: 44 RRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYV 80 >gi|254572547|ref|XP_002493383.1| Protein that forms a complex with Spt4p [Pichia pastoris GS115] gi|238033181|emb|CAY71204.1| Protein that forms a complex with Spt4p [Pichia pastoris GS115] gi|328352603|emb|CCA39001.1| Transcription elongation factor spt5 [Pichia pastoris CBS 7435] Length = 908 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 115 QRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV----VIFGRVTPVELAY 170 + + V F+ G+ V + +G G V +V++ V V + T VE+ Sbjct: 470 ETAKNLVSFQPGDNVEIINGELNHLTGTVSSVNQST-IVSVRLHSDDDTINSET-VEIPT 527 Query: 171 NQVEKI 176 + + KI Sbjct: 528 SDLRKI 533 >gi|156938196|ref|YP_001435992.1| 50S ribosomal protein L24P [Ignicoccus hospitalis KIN4/I] gi|166222062|sp|A8ACD3|RL24_IGNH4 RecName: Full=50S ribosomal protein L24P gi|156567180|gb|ABU82585.1| LSU ribosomal protein L24P [Ignicoccus hospitalis KIN4/I] Length = 125 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + G+ V + G F G V VD +K+R++V Sbjct: 44 RLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYV 79 >gi|224540035|ref|ZP_03680574.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus DSM 14838] gi|224518351|gb|EEF87456.1| hypothetical protein BACCELL_04948 [Bacteroides cellulosilyticus DSM 14838] Length = 115 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 9/73 (12%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 + WY++ E+K ++ L + P + + G+ FF Sbjct: 14 SRSWYVLYTAPRLERKLMQ---------HLTVAGYKTYCPMQTIYVNWNGKTKEIIVPFF 64 Query: 62 PGYVLIKAVMTDK 74 G V ++ + D Sbjct: 65 SGCVFVEGDLKDM 77 >gi|258578061|ref|XP_002543212.1| Spt5p protein [Uncinocarpus reesii 1704] gi|237903478|gb|EEP77879.1| Spt5p protein [Uncinocarpus reesii 1704] Length = 1052 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++ V +I R+ + GY+ Sbjct: 231 WAVKCRPGKEREIVFNIMKRMEERHPGSRNPLRITSAFERGGT------------MSGYI 278 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V +++ V + ++ E+ ++ R S + Sbjct: 279 YVEARKQADVMDALENLSNVFI----RSKLTLISVKEMPDLL--------RVQKSEELQP 326 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + G + ++ V+ V V + Sbjct: 327 GGWVRIKRGKYQGDLAQIEEVETNGLEVTVRL 358 >gi|322493051|emb|CBZ28336.1| transcription elongation regulator-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 702 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 22/159 (13%) Query: 34 LVTEITIPSERVVSVRKGRKVNSERRFFPG-------------YVLIKAVMTDKVYHTIK 80 +T +P E V + F Y+ D+ + +K Sbjct: 303 HITCKVVPREDFVQKPFNKATKRLEPRFFTPRQAVGVRERENSYIWGDLHF-DREGYLLK 361 Query: 81 DTPKVIGFLGTGENPSPVTD-----SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135 + G + ++ + + A + +G+ V V+ G Sbjct: 362 TVSTRMVISGAQLEQPSTEELARFYNDQREKVERALKAAEAAAQVPHISIGDSVRVTTGQ 421 Query: 136 FASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 + G+V+NV + + GRV P+++ QVE Sbjct: 422 LRNTIGVVENVFTNTNTAVLTCTAPGRVQPIKV---QVE 457 >gi|154311963|ref|XP_001555310.1| hypothetical protein BC1G_06015 [Botryotinia fuckeliana B05.10] gi|150850665|gb|EDN25858.1| hypothetical protein BC1G_06015 [Botryotinia fuckeliana B05.10] Length = 370 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 13/144 (9%) Query: 9 QVYSNCEKK----AVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 + S EK AV+ + + SR + + + P + K ++ + Y Sbjct: 96 RTLSGQEKAEYLAAVQCLATKPSRVRNNGTLYDDF-PWVHRYTSTSTHKASAFLPWHRYY 154 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE 124 + I D S + + + Sbjct: 155 IQIY------ENALKDDCSYTGTLPYWD--WSLDWEDFSRAPIWGHDNFGSDGNLDAETS 206 Query: 125 VGERVCVSDGPFASFNGIVKNVDE 148 VG+ CV DGPFA + + D Sbjct: 207 VGDGHCVIDGPFAGLTAMFYDNDY 230 >gi|296109309|ref|YP_003616258.1| ribosomal protein L24 [Methanocaldococcus infernus ME] gi|295434123|gb|ADG13294.1| ribosomal protein L24 [Methanocaldococcus infernus ME] Length = 121 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +++ G+ V + G F G V VD ++ R++V Sbjct: 43 NAIPVRKGDVVRIMRGDFKGLEGEVTKVDLKRYRIYV 79 >gi|284040610|ref|YP_003390540.1| ribosomal protein L24 [Spirosoma linguale DSM 74] gi|283819903|gb|ADB41741.1| ribosomal protein L24 [Spirosoma linguale DSM 74] Length = 118 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +E + P + G+ V V G G+V V EK R VE Sbjct: 1 MEKKITLPKHKFHIKTGDTVVVIGGNSKGQRGVVTEVIVEKDRARVE 47 >gi|225461164|ref|XP_002282889.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147860928|emb|CAN78749.1| hypothetical protein VITISV_002445 [Vitis vinifera] Length = 191 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%) Query: 88 FLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVD 147 + E P P+ + + + + +VG+ V + G G + + Sbjct: 34 LAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIF 93 Query: 148 EEKSRVHV 155 S V V Sbjct: 94 RHNSTVVV 101 >gi|313677131|ref|YP_004055127.1| LSU ribosomal protein l24p [Marivirga tractuosa DSM 4126] gi|312943829|gb|ADR23019.1| LSU ribosomal protein L24P [Marivirga tractuosa DSM 4126] Length = 115 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 14/46 (30%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G G V + EK R VE Sbjct: 1 MERRKNKQQKFHIRKGDTVKVIAGNAKGKTGTVLEMIGEKDRAIVE 46 >gi|156404091|ref|XP_001640241.1| predicted protein [Nematostella vectensis] gi|156227374|gb|EDO48178.1| predicted protein [Nematostella vectensis] Length = 485 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 +P + + VG + G +G + +VD + SRV V + I Sbjct: 235 EVKPSEPLDYRVGTCAVIGRGAHKDLHGKIISVDVDNSRVTVSLHI 280 >gi|218130699|ref|ZP_03459503.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM 20697] gi|217987043|gb|EEC53374.1| hypothetical protein BACEGG_02290 [Bacteroides eggerthii DSM 20697] Length = 107 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW + E+K + RL+ +G P + V G+ FPG Sbjct: 9 RWCALYTAPRSERK----LMQRLNEAGYA-----AFCPMQIVFRKWNGKTKEVFTPLFPG 59 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ ++ + ++ ++ G Sbjct: 60 FLFVEETADVASFVASQNVALLVDAEG 86 >gi|326481035|gb|EGE05045.1| transcription elongation factor spt5 [Trichophyton equinum CBS 127.97] Length = 865 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 588 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 635 >gi|326470197|gb|EGD94206.1| hypothetical protein TESG_01728 [Trichophyton tonsurans CBS 112818] Length = 1080 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 761 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 808 >gi|327297829|ref|XP_003233608.1| transcription elongation factor spt5 [Trichophyton rubrum CBS 118892] gi|326463786|gb|EGD89239.1| transcription elongation factor spt5 [Trichophyton rubrum CBS 118892] Length = 1079 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807 >gi|307595642|ref|YP_003901959.1| 50S ribosomal protein L24 [Vulcanisaeta distributa DSM 14429] gi|307550843|gb|ADN50908.1| ribosomal protein L24 [Vulcanisaeta distributa DSM 14429] Length = 161 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD K R++VE Sbjct: 47 PVRKGDTVLILRGDFKGVRGKVVEVDLRKMRIYVE 81 >gi|302653362|ref|XP_003018508.1| hypothetical protein TRV_07454 [Trichophyton verrucosum HKI 0517] gi|291182159|gb|EFE37863.1| hypothetical protein TRV_07454 [Trichophyton verrucosum HKI 0517] Length = 1099 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807 >gi|302507360|ref|XP_003015641.1| hypothetical protein ARB_05952 [Arthroderma benhamiae CBS 112371] gi|291179209|gb|EFE34996.1| hypothetical protein ARB_05952 [Arthroderma benhamiae CBS 112371] Length = 1079 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVE 174 VG+ V + GPF GIVK D VE+ +V PVE V+ Sbjct: 760 VGKTVHIRRGPFKGLLGIVK--DTTDIIARVELHSVSKVVPVEKENLSVK 807 >gi|262381976|ref|ZP_06075114.1| transcriptional regulator UpxY [Bacteroides sp. 2_1_33B] gi|262297153|gb|EEY85083.1| transcriptional regulator UpxY [Bacteroides sp. 2_1_33B] Length = 265 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 89 LGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF----FEVGERVCVSDGPFASFNGIVK 144 G ++D E+E + + V G+RV ++ GPFA V Sbjct: 16 SGGRSYFPYLSDREMETLRWVAASYSNELPVYVPDSGHLLKGDRVRITSGPFADMEAEVV 75 Query: 145 NVDEEKSRVHVEVVIF 160 V V V I Sbjct: 76 -VQPGGGHKDVMVRIL 90 >gi|240104048|ref|YP_002960357.1| 50S ribosomal protein L24P [Thermococcus gammatolerans EJ3] gi|239911602|gb|ACS34493.1| LSU ribosomal protein L24P (rpl24P) [Thermococcus gammatolerans EJ3] Length = 121 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V V G F G V VD ++ R+HVE Sbjct: 45 PIREGDKVRVMRGDFKGKEGKVLEVDLKRYRIHVE 79 >gi|198275733|ref|ZP_03208264.1| hypothetical protein BACPLE_01908 [Bacteroides plebeius DSM 17135] gi|198271362|gb|EDY95632.1| hypothetical protein BACPLE_01908 [Bacteroides plebeius DSM 17135] Length = 175 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 14/176 (7%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 +W++++ + K LD + E P + R G++ E F Sbjct: 7 KWFVMRDLTRSNAKIPAY-------QMLDDMGIENFTPKVTKIVTRNGKRERKELPFIHD 59 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQV----EAAVQRPVS 119 + + + T + FL G P V D ++ V P Sbjct: 60 LIFVHSSRTVIDPIVERVHTFQYRFL-KGREPMIVRDKDMASFKQAVESSRFPQYYSPQD 118 Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKS-RVHVEVVIF-GRVTPVELAYNQV 173 ++ + G G + V K R+ VE+ + VE Y Q+ Sbjct: 119 ITPCMFKRKIRIIGGRLDGCEGYLLTVRGSKRKRLLVELPMLITAAVEVEPEYIQL 174 >gi|124028166|ref|YP_001013486.1| 50S ribosomal protein L24P [Hyperthermus butylicus DSM 5456] gi|166222061|sp|A2BMD0|RL24_HYPBU RecName: Full=50S ribosomal protein L24P gi|123978860|gb|ABM81141.1| 50S ribosomal protein L24P [Hyperthermus butylicus DSM 5456] Length = 149 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S+ VG+ V + G F G V VD + R+ VE Sbjct: 43 RSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVE 80 >gi|298705365|emb|CBJ28655.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1000 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNV--DEEK-SRVHVEVVI 159 + +VG V + DG F G + + + + SR V + Sbjct: 488 EKYIKVGGHVRIIDGRFTGETGTILKIVKNPDGASRAMVLTDM 530 >gi|221117155|ref|XP_002160161.1| PREDICTED: similar to suppressor of Ty 5 homolog (S. cerevisiae), partial [Hydra magnipapillata] Length = 687 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +G+ V + GPF + GI+K+ + +R+ + Sbjct: 338 IGQTVRIVQGPFKGYIGIIKDATDSLARIEL 368 >gi|222524571|ref|YP_002569042.1| MutS2 family protein [Chloroflexus sp. Y-400-fl] gi|222448450|gb|ACM52716.1| MutS2 family protein [Chloroflexus sp. Y-400-fl] Length = 819 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 +N P + +VG++V V+ NG + +DEE V+V F Sbjct: 651 RLNVQTQPAPPPPAEKPLQVGDQVQVTS---IGLNGEIVAIDEEDQTATVQVGGF----R 703 Query: 166 VELAYNQVEK 175 + +++N +++ Sbjct: 704 MTVSFNDLKR 713 >gi|254172791|ref|ZP_04879465.1| ribosomal protein L24 [Thermococcus sp. AM4] gi|214032947|gb|EEB73775.1| ribosomal protein L24 [Thermococcus sp. AM4] Length = 121 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V V G F G V VD ++ R+HVE Sbjct: 45 PIREGDKVKVMRGDFKGKEGKVVEVDLKRYRIHVE 79 >gi|163846758|ref|YP_001634802.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl] gi|163668047|gb|ABY34413.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl] Length = 823 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTP 165 +N P + +VG++V V+ NG + +DEE V+V F Sbjct: 655 RLNVQTQPAPPPPAEKPLQVGDQVQVTS---IGLNGEIVAIDEEDQTATVQVGGF----R 707 Query: 166 VELAYNQVEK 175 + +++N +++ Sbjct: 708 MTVSFNDLKR 717 >gi|224011834|ref|XP_002294570.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969590|gb|EED87930.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 888 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 9/96 (9%) Query: 84 KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE---VGERVCVSDGPFASFN 140 G+ G+ V D E+ A V+ V + +G V ++ GPF Sbjct: 211 NARGWFSIGDRKFRVGDVEVISYPTTTTADGDATVAEVDAQDKYMGALVRITTGPFEGME 270 Query: 141 GIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 G +K +++ + I G++ ++++ V+ I Sbjct: 271 GTIKE-RTDQTFFKLR-EIPGKI----VSFDDVKLI 300 >gi|269860187|ref|XP_002649816.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi H348] gi|220066757|gb|EED44229.1| transcription initiation protein SPT5 [Enterocytozoon bieneusi H348] Length = 592 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Query: 110 VEAAVQRPVSSVFFE------VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 V +++P V F+ +G+ V ++ G F G VK ++ R+ + Sbjct: 374 VSEKIEKPPVKVPFKKHINPLIGKSVKITHGEFKGLIGTVKEINRMSCRIRL 425 >gi|300708088|ref|XP_002996231.1| hypothetical protein NCER_100690 [Nosema ceranae BRL01] gi|239605514|gb|EEQ82560.1| hypothetical protein NCER_100690 [Nosema ceranae BRL01] Length = 138 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S VG+ V V GPF G V V +K R+ +E Sbjct: 45 FRSFPVAVGDIVKVHSGPFRGKEGQVMEVILKKYRITIE 83 >gi|330038743|ref|XP_003239687.1| 60S ribosomal protein L26 [Cryptomonas paramecium] gi|327206611|gb|AEA38789.1| 60S ribosomal protein L26 [Cryptomonas paramecium] Length = 87 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 23/37 (62%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 S+ +VG+RV ++ G F +G + + +++ V++E Sbjct: 31 SILIKVGDRVRITKGSFKGHSGKIIEICTKRNFVYIE 67 >gi|147838939|emb|CAN68098.1| hypothetical protein VITISV_043874 [Vitis vinifera] Length = 1107 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 13/45 (28%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 +G + + GPF + G V +V+ G+ VEL Sbjct: 702 IGSTIKIRQGPFKGYRGRVVDVN-------------GQSVRVELE 733 >gi|41615050|ref|NP_963548.1| 50S ribosomal protein L24P [Nanoarchaeum equitans Kin4-M] gi|46397672|sp|P60663|RL24_NANEQ RecName: Full=50S ribosomal protein L24P gi|40068774|gb|AAR39109.1| NEQ257 [Nanoarchaeum equitans Kin4-M] Length = 140 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 +V +VG+ V V G F G V ++D + RV++ + Sbjct: 56 RNVPIKVGDVVRVERGNFRGKEGQVIDIDPKYYRVYLSLD 95 >gi|327402772|ref|YP_004343610.1| 50S ribosomal protein L24P [Fluviicola taffensis DSM 16823] gi|327318280|gb|AEA42772.1| LSU ribosomal protein L24P [Fluviicola taffensis DSM 16823] Length = 105 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 15/38 (39%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + +VG+ V V G G V +D K R V Sbjct: 2 QKKLHIKVGDTVKVLSGESRGQEGTVLTIDRNKERATV 39 >gi|94970553|ref|YP_592601.1| hypothetical protein Acid345_3526 [Candidatus Koribacter versatilis Ellin345] gi|94552603|gb|ABF42527.1| hypothetical protein Acid345_3526 [Candidatus Koribacter versatilis Ellin345] Length = 408 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 130 CVSDGPFASFNGIVKNVDEEKSRVHV 155 + G F S G V++VD+EK+RV V Sbjct: 210 EIVSGSFRSVAGTVQSVDKEKNRVTV 235 >gi|260061908|ref|YP_003194988.1| 50S ribosomal protein L24 [Robiginitalea biformata HTCC2501] gi|88786041|gb|EAR17210.1| 50S ribosomal protein L24 [Robiginitalea biformata HTCC2501] Length = 103 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G G V + EK++ VE Sbjct: 1 MKFKIKSGDTVRVIAGDHKGSEGKVVRIIREKNKAIVE 38 >gi|315925245|ref|ZP_07921459.1| 50S ribosomal protein L24 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621479|gb|EFV01446.1| 50S ribosomal protein L24 [Pseudoramibacter alactolyticus ATCC 23263] Length = 107 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + + G+ V V G G V VD EK RV VE V I Sbjct: 3 RKLHVKTGDTVQVISGKDLGKTGKVLAVDLEKRRVKVEGVNI 44 >gi|254562745|ref|YP_003069840.1| hypothetical protein METDI4379 [Methylobacterium extorquens DM4] gi|254270023|emb|CAX26009.1| hypothetical protein METDI4379 [Methylobacterium extorquens DM4] Length = 92 Score = 36.2 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +VGE V S G F+ F G E + + + + G L ++++ Sbjct: 38 MQVGEEVRASSGLFSGFIGKFVGTAEGGAVGVISLEVMGSPFDYRLPIEDIQRV 91 >gi|299140995|ref|ZP_07034133.1| hypothetical protein HMPREF0665_00557 [Prevotella oris C735] gi|298577961|gb|EFI49829.1| hypothetical protein HMPREF0665_00557 [Prevotella oris C735] Length = 181 Score = 36.2 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 16/151 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY +++++ +K + GL+ + E + + + R Sbjct: 13 WYAIKLFTVRQKAVAAYFDEK----GLETFIPEEYVD----IEDENHKVKRVLRPVVRNL 64 Query: 65 VLIKAVMTDK--VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 + +K ++ + + T K+ + EN S ++ + + + Sbjct: 65 IFLKKDRDEQEIRKYVLASTFKMSVVTKSRENKSYYEIPAVQMFEFRAMCNPELTMRKYL 124 Query: 122 -----FFEVGERVCVSDGPFASFNGIVKNVD 147 + G+RV V GP G + + Sbjct: 125 SEEQAHLKKGDRVLVKHGPLKGLTGRLVRSN 155 >gi|281201347|gb|EFA75559.1| transcription initiation factor Spt5 [Polysphondylium pallidum PN500] Length = 680 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 97 PVTDSEIEHIMNQVEAAVQRPV---SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRV 153 DSE MN + A P + F G+ V V +G + GIV +VD +KS Sbjct: 99 YGDDSEQPSTMNSILDAQIIPKVAARPINFSKGDTVKVIEGDLKNLMGIVDSVD-DKSVA 157 Query: 154 HV 155 + Sbjct: 158 VL 159 >gi|317474236|ref|ZP_07933512.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] gi|316909546|gb|EFV31224.1| transcription termination factor nusG [Bacteroides eggerthii 1_2_48FAA] Length = 115 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%) Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63 RW + E+K + RL+ +G P + V G+ FPG Sbjct: 17 RWCALYTAPRSERK----LMQRLNEAGYA-----AFCPMQIVFRKWNGKTKEVFTPLFPG 67 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLG 90 ++ ++ + ++ ++ G Sbjct: 68 FLFVEETADVASFVASQNVALLVDAEG 94 >gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] Length = 1367 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 13/126 (10%) Query: 15 EKKAVESIGGRL-------------SRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 E K ++ RL GL + ++ I E N F Sbjct: 636 EAKVKRALLTRLLGFNLKKLIDLQGQSEGLSRYIADLDIIREMWFEKGFLTAWNYALNLF 695 Query: 62 PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV 121 + + A + + + + L + Q+++ + Sbjct: 696 QVWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQGAQKLYHWYLRQLQSPSGKDSEKE 755 Query: 122 FFEVGE 127 G+ Sbjct: 756 RKLSGD 761 >gi|224536078|ref|ZP_03676617.1| hypothetical protein BACCELL_00943 [Bacteroides cellulosilyticus DSM 14838] gi|224522297|gb|EEF91402.1| hypothetical protein BACCELL_00943 [Bacteroides cellulosilyticus DSM 14838] Length = 95 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFF 61 T WYIV E+K E++ G+ + I + V++ + R F Sbjct: 13 TRNWYIVLTLPRKERKTKETLE----NKGMITYLPTIYVKRRWKEQVKEIQIPAVNRCVF 68 Query: 62 PG 63 Sbjct: 69 IY 70 >gi|326479052|gb|EGE03062.1| KOW domain-containing protein [Trichophyton equinum CBS 127.97] Length = 356 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + + + + + + + V V F G+RVC+ G G V VDEE Sbjct: 69 RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128 Query: 150 KSRVHVE-VVIFGRVTPV 166 V VE V +F P Sbjct: 129 SQSVTVEGVNMFDVEFPA 146 >gi|313244793|emb|CBY15497.1| unnamed protein product [Oikopleura dioica] Length = 441 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 106 IMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + + ++ G V + GP+ G + +D + RV V Sbjct: 205 MKKAELKEENKSGVALEMRKGAFVEIEHGPYKGRYGKIIAIDGDMGRVTV 254 >gi|219851118|ref|YP_002465550.1| 50S ribosomal protein L24P [Methanosphaerula palustris E1-9c] gi|219545377|gb|ACL15827.1| ribosomal protein L24 [Methanosphaerula palustris E1-9c] Length = 122 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIF---GRVTPVELAYNQVEKI 176 G+ V V G F G+V VD S++ V V + G P ++ + V+ I Sbjct: 50 TGDTVKVLRGDFIGEEGVVDGVDTRTSKIIVHGVSVTKADGTEVPRKVDPSNVQII 105 >gi|326469829|gb|EGD93838.1| hypothetical protein TESG_01370 [Trichophyton tonsurans CBS 112818] Length = 356 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + + + + + + + V V F G+RVC+ G G V VDEE Sbjct: 69 RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128 Query: 150 KSRVHVE-VVIFGRVTPV 166 V VE V +F P Sbjct: 129 SQSVTVEGVNMFDVEFPA 146 >gi|325967618|ref|YP_004243810.1| 50S ribosomal protein L24 [Vulcanisaeta moutnovskia 768-28] gi|323706821|gb|ADY00308.1| 50S ribosomal protein L24 [Vulcanisaeta moutnovskia 768-28] Length = 159 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 16/35 (45%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD K R+HVE Sbjct: 47 PVRKGDTVLILRGDFKGVRGKVMEVDLRKMRIHVE 81 >gi|327400861|ref|YP_004341700.1| 50S ribosomal protein L24 [Archaeoglobus veneficus SNP6] gi|327316369|gb|AEA46985.1| ribosomal protein L24 [Archaeoglobus veneficus SNP6] Length = 117 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 S+ + G++V + G FA G V VD ++ + V Sbjct: 41 RSIRIKKGDKVRIMRGKFAGHEGRVLEVDMKRCVIKV 77 >gi|242088405|ref|XP_002440035.1| hypothetical protein SORBIDRAFT_09g024890 [Sorghum bicolor] gi|241945320|gb|EES18465.1| hypothetical protein SORBIDRAFT_09g024890 [Sorghum bicolor] Length = 1569 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%) Query: 95 PSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 ++ E ++ R F VG+ + + GP + V + ++ V Sbjct: 544 TPMFSEPTYEQNEHRDTERPYRSTREQLFSVGQMLRIRKGPLKGYLCRVVRIF--RNDVT 601 Query: 155 VEVVIFGRVTPVELAYNQV 173 V++ + V+ V Sbjct: 602 VKLDSLLKTVTVQADLLSV 620 >gi|156103269|ref|XP_001617327.1| 50S ribosomal protein L24 [Plasmodium vivax SaI-1] gi|148806201|gb|EDL47600.1| 50S ribosomal protein L24, putative [Plasmodium vivax] Length = 244 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +VG+ V V GP+ GIV N++ +++ V V Sbjct: 55 NIKVGDLVKVLYGPYKDKEGIVLNINTKRNTVIV 88 >gi|170576825|ref|XP_001893778.1| KOW motif family protein [Brugia malayi] gi|158600001|gb|EDP37376.1| KOW motif family protein [Brugia malayi] Length = 277 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 11/149 (7%) Query: 23 GGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 R R L +P E V V++ + +++ + + Sbjct: 7 LSRSVRRTYMELDFAKHVPKEYVGKVKRTVPKKVYTNRYGAPDIVRWTL--HPDDYVPSD 64 Query: 83 PKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE-----VGERVCVSDGPFA 137 + +N + +M++ ++ E G+ V V G Sbjct: 65 GRPWELETFEKNVQRAREYHQHKLMHKFFELRHEKKVAIPAEEWTIFPGDLVQVMIGKDK 124 Query: 138 SFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 G+V V++E + + V+ GR T + Sbjct: 125 GKTGVVSRVNKETNAIFVK----GRHTKL 149 >gi|46397696|sp|Q8U010|RL24_PYRFU RecName: Full=50S ribosomal protein L24P Length = 121 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G + G V VD ++ R++VE Sbjct: 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 >gi|295668190|ref|XP_002794644.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis Pb01] gi|226286060|gb|EEH41626.1| transcription elongation factor spt5 [Paracoccidioides brasiliensis Pb01] Length = 1105 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 24/152 (15%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 + V+ E++ V +I R+ P + +R GY+ Sbjct: 245 WAVKCRPGKEREVVFNIMKRIEDR-----------PPDSRRPIRIMSAFERGG-TMSGYI 292 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 ++A V + D V T ++ E+ ++ ++ P Sbjct: 293 YVEARRQADVIDALDDMSNVY----TKSKMILISVKEMPDLLRVTKSEELVP-------- 340 Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V + G + +++V+ V V + Sbjct: 341 GGWVRIKRGKYQGDLAQLEDVETNGLDVTVRL 372 >gi|156937967|ref|YP_001435763.1| transcription antitermination protein NusG [Ignicoccus hospitalis KIN4/I] gi|156566951|gb|ABU82356.1| NGN domain protein [Ignicoccus hospitalis KIN4/I] Length = 147 Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 31/150 (20%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+ S E I R LD V + +P G+V++ Sbjct: 8 VRTVSGREIDVALLIEERARAKNLD--VKSVIVP-----------------PRIKGFVIV 48 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 + + + + + G + + V ++ EVG+ Sbjct: 49 E---SPAHFVVAEAVRGIKYVRGGPGKKISLEE---------VLKMIKPVPIIETVEVGD 96 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G F V+ EK+ + + + Sbjct: 97 IVELVAGVFKGVKARVEAKIPEKNELVLSI 126 >gi|229829418|ref|ZP_04455487.1| hypothetical protein GCWU000342_01508 [Shuttleworthia satelles DSM 14600] gi|229791849|gb|EEP27963.1| hypothetical protein GCWU000342_01508 [Shuttleworthia satelles DSM 14600] Length = 103 Score = 35.8 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++++ + G+ V V G + G V +VD +K R+ VE Sbjct: 1 MATMKIKKGDMVRVIAGADKNNEGKVLSVDPKKGRLVVE 39 >gi|311748503|ref|ZP_07722288.1| ribosomal protein L24 [Algoriphagus sp. PR1] gi|126577020|gb|EAZ81268.1| ribosomal protein L24 [Algoriphagus sp. PR1] Length = 114 Score = 35.8 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 16/46 (34%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + G+ V V G G V +VD K R VE Sbjct: 1 MERKFNKQPKLHIKTGDTVKVISGDDKGKTGKVLSVDIAKRRAFVE 46 >gi|120437163|ref|YP_862849.1| 50S ribosomal protein L24 [Gramella forsetii KT0803] gi|166222056|sp|A0M587|RL24_GRAFK RecName: Full=50S ribosomal protein L24 gi|117579313|emb|CAL67782.1| 50S ribosomal protein L24 [Gramella forsetii KT0803] Length = 103 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V+ V EK++ VE Sbjct: 1 MTKLKIKSGDTVRVIAGDHKGQEGKVQKVLIEKNKAIVE 39 >gi|325283271|ref|YP_004255812.1| luciferase family oxidoreductase, group 1 [Deinococcus proteolyticus MRP] gi|324315080|gb|ADY26195.1| luciferase family oxidoreductase, group 1 [Deinococcus proteolyticus MRP] Length = 333 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 20/158 (12%) Query: 8 VQVYSNCEKKAVESIG-------GRLSRSGLDHLVTEITIPSERVVSVRKGRK------- 53 VQ Y E I ++ GL + P + R R Sbjct: 153 VQAYPGKETHVPLYILGSSLFGAELAAQLGLPYAFASHFAPPALNQAARLYRGTFNADGP 212 Query: 54 --VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVE 111 + F V + A + H + + G V ++ ++ + Sbjct: 213 LAPADAKPHFIAAVNVIASDDESTAHEQRRLAEDEWLQGMFGRGERVFSADELEMLRESS 272 Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 A Q G + V A N +VK V + Sbjct: 273 QAQQVLQMLSRTVAGTQAEVV----AGLNALVKEVQAD 306 >gi|126329447|ref|XP_001374291.1| PREDICTED: similar to G patch domain and KOW motifs [Monodelphis domestica] Length = 512 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G+ V V GP G V+ +D + +R V + Sbjct: 224 PGKAVLVLAGPHRGLYGKVEGLDPDNARAVVRL 256 >gi|328865473|gb|EGG13859.1| hypothetical protein DFA_11620 [Dictyostelium fasciculatum] Length = 531 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 23/71 (32%) Query: 84 KVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIV 143 + + E + + V + + + G+RV V GP N V Sbjct: 271 QPSDVANKEKKYMTAPKGEDGKVRHTVGLSEKLVPLKFGLQPGDRVLVISGPHEGLNATV 330 Query: 144 KNVDEEKSRVH 154 +++ + V Sbjct: 331 ESLAQSDRIVI 341 >gi|315225412|ref|ZP_07867226.1| 50S ribosomal protein L24 [Capnocytophaga ochracea F0287] gi|314944685|gb|EFS96720.1| 50S ribosomal protein L24 [Capnocytophaga ochracea F0287] Length = 104 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G V VD EK+R +E Sbjct: 1 MMKLKIKTGDTVKVIAGDEKGKEGKVLRVDREKNRAIIE 39 >gi|145591930|ref|YP_001153932.1| 50S ribosomal protein L24P [Pyrobaculum arsenaticum DSM 13514] gi|166222094|sp|A4WLL3|RL24_PYRAR RecName: Full=50S ribosomal protein L24P gi|145283698|gb|ABP51280.1| LSU ribosomal protein L24P [Pyrobaculum arsenaticum DSM 13514] Length = 122 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD +K R++VE Sbjct: 50 GDTVMILRGDFKGVTGKVVRVDLKKVRIYVE 80 >gi|329954411|ref|ZP_08295503.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328527679|gb|EGF54672.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 161 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 15/147 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 W+ ++ E +A + + E +P V + +K Sbjct: 10 WFAMRAPFCKELEAKRLLDKQA---------IENFVPMCYKVFEKNNKKRKELVPAVHNL 60 Query: 65 VLIKAVMTDKVYHTIK-DTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRP-----V 118 + ++ + I G+N + V Sbjct: 61 IFVRTTRRIIRETKRTVPFLQYITMPDAGKNSPIIVPDIRMQQFISVSRLHNERLIYLTP 120 Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKN 145 + G RV V GPF G+ Sbjct: 121 EEINLAKGTRVRVLGGPFDGVEGVFVK 147 >gi|305665126|ref|YP_003861413.1| 50S ribosomal protein L24 [Maribacter sp. HTCC2170] gi|88709878|gb|EAR02110.1| 50S ribosomal protein L24 [Maribacter sp. HTCC2170] Length = 104 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 16/39 (41%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V + G G V V EK + VE Sbjct: 1 MKKLKIKTGDTVRIIAGDHKGTEGKVTKVFIEKDKAIVE 39 >gi|281424262|ref|ZP_06255175.1| putative UpdY protein [Prevotella oris F0302] gi|281401531|gb|EFB32362.1| putative UpdY protein [Prevotella oris F0302] Length = 195 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 16/151 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY +++++ +K + GL+ + E + + + R Sbjct: 27 WYAIKLFTVRQKAVAAYFNEK----GLETFIPEEYVD----IEDENHKVKRVLRPVVRNL 78 Query: 65 VLIKAVMTDK--VYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSV- 121 + +K ++ + + T K+ + EN S ++ + + + Sbjct: 79 IFLKKDRDEQEIRKYVLASTFKMSVVTKSRENKSYYEIPAVQMFEFRAMCNPELTMRKYL 138 Query: 122 -----FFEVGERVCVSDGPFASFNGIVKNVD 147 + G+RV V GP G + + Sbjct: 139 SEEQAHLKKGDRVLVKHGPLKGLTGRLVRSN 169 >gi|83949777|ref|ZP_00958510.1| ribosomal protein L24 [Roseovarius nubinhibens ISM] gi|83837676|gb|EAP76972.1| ribosomal protein L24 [Roseovarius nubinhibens ISM] Length = 103 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 + G++V V G G + +VD + + VE V + R T Sbjct: 6 KKGDKVVVLSGKDKGKEGTITSVDPKSGKAVVEGVNMAIRHTR 48 >gi|288931521|ref|YP_003435581.1| ribosomal protein L24 [Ferroglobus placidus DSM 10642] gi|288893769|gb|ADC65306.1| ribosomal protein L24 [Ferroglobus placidus DSM 10642] Length = 120 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 101 SEIEHIMNQVEAAVQRPVS---SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 E +++ + R ++ G++V + G F G V VD ++ R++VE Sbjct: 23 HEKHRLLHATLSKELREKYGKRAIRVRKGDKVKILRGDFKGHVGKVVEVDMKRVRIYVE 81 >gi|126329451|ref|XP_001374322.1| PREDICTED: similar to G patch domain and KOW motifs [Monodelphis domestica] Length = 514 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 G V V GP G V+ +D + +R V + Sbjct: 261 PGRAVLVLAGPHRGLYGKVEGLDPDNARAVVRL 293 >gi|124484920|ref|YP_001029536.1| 50S ribosomal protein L24P [Methanocorpusculum labreanum Z] gi|166222069|sp|A2SPL3|RL24_METLZ RecName: Full=50S ribosomal protein L24P gi|124362461|gb|ABN06269.1| LSU ribosomal protein L24P [Methanocorpusculum labreanum Z] Length = 121 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 G+ V V G F G+V VD + ++V V Sbjct: 49 TGDTVKVLRGEFKGIEGVVDGVDVKNTKVLV 79 >gi|18978185|ref|NP_579542.1| 50S ribosomal protein L24P [Pyrococcus furiosus DSM 3638] gi|18893994|gb|AAL81937.1| LSU ribosomal protein L24P [Pyrococcus furiosus DSM 3638] Length = 124 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 VG++V + G + G V VD ++ R++VE Sbjct: 48 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 82 >gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822] gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822] Length = 1006 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELA 169 + F+ G+RV + DG + G +K++ + V + + V PV+L Sbjct: 955 IKFKPGDRV-IDDG---GWKGTIKSIHPNGKKAQVYLDLMESVHPVDLD 999 >gi|312137087|ref|YP_004004424.1| lsu ribosomal protein l24p [Methanothermus fervidus DSM 2088] gi|311224806|gb|ADP77662.1| LSU ribosomal protein L24P [Methanothermus fervidus DSM 2088] Length = 123 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 +V G++V V G F G V+NVD ++ RV+VE Sbjct: 42 RRTVPIRRGDKVEVMRGDFKGHVGKVENVDLKRYRVYVE 80 >gi|167540091|ref|XP_001733557.1| suppressor of ty [Entamoeba dispar SAW760] gi|165893855|gb|EDR21974.1| suppressor of ty, putative [Entamoeba dispar SAW760] Length = 727 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 7/50 (14%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDE-------EKSRVHVEVV 158 + S++F VG+RV V+DG +A+ GI++ + +K + + V Sbjct: 370 KEDVSIYFNVGDRVKVTDGMYANETGIIEAIKGDEVFVFTDKKKASICVS 419 >gi|170120671|ref|XP_001891293.1| predicted protein [Laccaria bicolor S238N-H82] gi|164633285|gb|EDQ98056.1| predicted protein [Laccaria bicolor S238N-H82] Length = 403 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 39/188 (20%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKG------------- 51 W +V V E E I R+ R +D + P Sbjct: 92 WAVV-VKPGYE----EQIVFRIHRRLMDKRFSAHLRPPAVFGWKALPGRVFFEGGSKEII 146 Query: 52 -RKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK-VIGFLGTG------------ENPSP 97 + N ++ ++G G Sbjct: 147 RKVCNGISNVLASKTFNIPDPNPSIFTLPDTFQPKRHSWIGNGVKITDRDSRAGFGTIVD 206 Query: 98 VTDSEIEHIMNQVEAAVQRPVSS--VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + D+E + + + P SS +VG+ V + G G V V+++ V V Sbjct: 207 IKDNEAVVFLTTHDVTITVPFSSLRKHLKVGDEVRILLGDHQGVTGWV--VNQDDDYVEV 264 Query: 156 E---VVIF 160 V F Sbjct: 265 SPGNVEFF 272 >gi|295135690|ref|YP_003586366.1| 50S ribosomal protein L24 [Zunongwangia profunda SM-A87] gi|294983705|gb|ADF54170.1| 50S ribosomal protein L24 [Zunongwangia profunda SM-A87] Length = 103 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V+ V +K++ VE Sbjct: 1 MAKLKIKSGDTVLVIAGDHKGQQGKVQKVFPDKNKAIVE 39 >gi|156087497|ref|XP_001611155.1| KOW motif family protein [Babesia bovis] gi|154798409|gb|EDO07587.1| KOW motif family protein [Babesia bovis] Length = 864 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSV-FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 + EI+ + +P + +F+ G+ V + DG +G++ VD EK Sbjct: 433 MHNDEIEIQPEDESIPNFKIQPSCVMKYFQEGDNVRIIDGINRGESGLISIVDFEKKTAV 492 Query: 155 V 155 V Sbjct: 493 V 493 >gi|1041015|gb|AAC44461.1| AnfA1 [Serratia entomophila] Length = 154 Score = 35.4 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 1/109 (0%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M +WY+++ +S+ G + ++ E + + Sbjct: 1 MKKKWYLIRCNYGKIDLGQKSLETYGLFEGFPAPNLKPSLEFEGFYLTFQKNFFRKGMVY 60 Query: 61 F-PGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMN 108 F P Y+ ++ + I+ V GF+ G + D I IM Sbjct: 61 FSPPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGIKSIPDIVIGKIMK 109 >gi|316972420|gb|EFV56098.1| g patch domain and KOW motif proteins-containing protein [Trichinella spiralis] Length = 409 Score = 35.4 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 + + V V G F G + + D RV V + VEL+Y+ V Sbjct: 352 IPRQEQSSVMVVCGKFCGQLGRIIHRDTRNCRVLVALA----ENTVELSYDDV 400 >gi|255570428|ref|XP_002526173.1| suppressor of ty, putative [Ricinus communis] gi|223534550|gb|EEF36249.1| suppressor of ty, putative [Ricinus communis] Length = 1045 Score = 35.4 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV-----IFGR 162 VG V + GPF + G V + V VE+ I G+ Sbjct: 710 VGTTVKIRLGPFKGYRGRVVEIKGPS--VRVELESQMKVILGK 750 >gi|121703812|ref|XP_001270170.1| ribosomal protein L14 [Aspergillus clavatus NRRL 1] gi|119398314|gb|EAW08744.1| ribosomal protein L14 [Aspergillus clavatus NRRL 1] Length = 149 Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + + EVG V + GPF V + + K V V Sbjct: 1 MADIDVKVAQWKLVEVGRVVLIRSGPFTGKLAAVVEIIDHK---RVLVD 46 >gi|324499705|gb|ADY39881.1| Transcription elongation factor SPT5 [Ascaris suum] Length = 1223 Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 E + + + + F G+ V V+DG + G V++VD EK V V Sbjct: 529 QETTDDLKKELEGTRVKERAYTFAPGDYVEVADGELVNLRGRVQSVDGEK--VVVL 582 >gi|66806925|ref|XP_637185.1| hypothetical protein DDB_G0287551 [Dictyostelium discoideum AX4] gi|60465593|gb|EAL63675.1| hypothetical protein DDB_G0287551 [Dictyostelium discoideum AX4] Length = 455 Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 5/140 (3%) Query: 13 NCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMT 72 N E+K + R+ + + + +++ E + + G K M Sbjct: 141 NFERKVPNWVCQRIEIQDFKEKIADRKHCNFNNNTIQVPHHFKQENKDYWGSGWSKGHMV 200 Query: 73 DKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVS 132 + FL ++ + ++ V + Sbjct: 201 PAGDNIKSQESMCQTFLLNSNIVPQDLNNNQNFWYRLESFCKNQLINRFK-----SVTII 255 Query: 133 DGPFASFNGIVKNVDEEKSR 152 GP +++ +DE++ + Sbjct: 256 SGPIYHHPNLIEQLDEDQLK 275 >gi|315229868|ref|YP_004070304.1| 50S ribosomal protein L26e (L24p) [Thermococcus barophilus MP] gi|315182896|gb|ADT83081.1| LSU ribosomal protein L26e (L24p) [Thermococcus barophilus MP] Length = 120 Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V + G + G V VD ++ R++VE Sbjct: 45 PIRTGDKVRIMRGDYKGIEGKVVEVDLKRYRIYVE 79 >gi|89891141|ref|ZP_01202649.1| 50S ribosomal protein L24 (rplX) [Flavobacteria bacterium BBFL7] gi|89516785|gb|EAS19444.1| 50S ribosomal protein L24 (rplX) [Flavobacteria bacterium BBFL7] Length = 103 Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + V + G++V V G G++ + ++K++ VE Sbjct: 1 MVKVKIKTGDKVRVLAGEHKGSEGVITRIFKDKNKAIVE 39 >gi|294938792|ref|XP_002782201.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] gi|239893699|gb|EER13996.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] Length = 1267 Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 VG+ V V+ G + G V +D ++ RV+V Sbjct: 503 VGDSVVVNGGDMKNLRGRVVTIDTDRRRVNV 533 >gi|84494775|ref|ZP_00993894.1| 50S ribosomal protein L24 [Janibacter sp. HTCC2649] gi|84384268|gb|EAQ00148.1| 50S ribosomal protein L24 [Janibacter sp. HTCC2649] Length = 115 Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + G+ V V G G V +VD EK+RV VE Sbjct: 1 MAKFGIKKGDTVQVLTGKDKGSTGKVISVDREKNRVLVE 39 >gi|86132555|ref|ZP_01051148.1| 50S ribosomal protein L24 [Dokdonia donghaensis MED134] gi|85816797|gb|EAQ37982.1| 50S ribosomal protein L24 [Dokdonia donghaensis MED134] Length = 103 Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V V EK++ VE Sbjct: 1 MTKLKIKTGDTVKVIAGDHKGSEGKVVKVFIEKNKAIVE 39 >gi|328869147|gb|EGG17525.1| transcription initiation factor Spt5 [Dictyostelium fasciculatum] Length = 1072 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDE 148 ++ F G+ V V +G G V+++D+ Sbjct: 435 TIQFTKGDTVKVIEGDLKGLMGKVESIDD 463 >gi|73947650|ref|XP_867118.1| PREDICTED: similar to suppressor of Ty 5 homolog isoform 2 [Canis familiaris] Length = 1093 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 + V + + F+ G+ V V +G + G + +VD K Sbjct: 411 LEVVTESTEDGEREHNFQPGDNVEVCEGELINLQGKILSVDGNK 454 >gi|296414111|ref|XP_002836746.1| hypothetical protein [Tuber melanosporum Mel28] gi|295631585|emb|CAZ80937.1| unnamed protein product [Tuber melanosporum] Length = 771 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 1/143 (0%) Query: 16 KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75 K ++++ R S + + + I ++ V Y + + Sbjct: 177 KAVMKALRKRGRHSEIPDIFHRMHIAGQKHVDTYALNICLEAYIEMGMYSKVISTYRHHR 236 Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIE-HIMNQVEAAVQRPVSSVFFEVGERVCVSDG 134 D + L + +E + + E S++F + V + G Sbjct: 237 PRVRPDIQTMRHRLRNLIAMRKLHQAEKLLRRLLREEGPPWMADSTMFALLLGGVKIISG 296 Query: 135 PFASFNGIVKNVDEEKSRVHVEV 157 F I K + E + ++HV V Sbjct: 297 SFHRMERIFKWMAESRVKLHVGV 319 >gi|84489696|ref|YP_447928.1| 50S ribosomal protein L24P [Methanosphaera stadtmanae DSM 3091] gi|109893290|sp|Q2NFW8|RL24_METST RecName: Full=50S ribosomal protein L24P gi|84373015|gb|ABC57285.1| 50S ribosomal protein L24P [Methanosphaera stadtmanae DSM 3091] Length = 117 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + S G+ V + G F G V+ VD + RV V Sbjct: 34 EEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLV 75 >gi|126178525|ref|YP_001046490.1| 50S ribosomal protein L24P [Methanoculleus marisnigri JR1] gi|166222072|sp|A3CT08|RL24_METMJ RecName: Full=50S ribosomal protein L24P gi|125861319|gb|ABN56508.1| LSU ribosomal protein L24P [Methanoculleus marisnigri JR1] Length = 121 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 G+ V V G FA G+V VD + R+ V Sbjct: 49 KGDTVKVLRGDFAGDEGVVDAVDMKACRLVV 79 >gi|126460353|ref|YP_001056631.1| 50S ribosomal protein L24P [Pyrobaculum calidifontis JCM 11548] gi|166222095|sp|A3MWZ8|RL24_PYRCJ RecName: Full=50S ribosomal protein L24P gi|126250074|gb|ABO09165.1| LSU ribosomal protein L24P [Pyrobaculum calidifontis JCM 11548] Length = 128 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD ++ R+ VE Sbjct: 50 GDTVLIMRGDFKGVTGKVVKVDLKRVRIFVE 80 >gi|325116289|emb|CBZ51842.1| putative ribosomal protein L24 [Neospora caninum Liverpool] Length = 237 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +++ A + EVG+ V V GP G+V +++++++ V V Sbjct: 41 REKLQPAPIDLSYYLNMEVGDLVEVLHGPDCGRQGVVLSINKKRNTVIV 89 >gi|67642501|ref|ZP_00441257.1| cardiolipin synthetase YbhO [Burkholderia mallei GB8 horse 4] gi|121599944|ref|YP_994046.1| cardiolipin synthetase ybhO [Burkholderia mallei SAVP1] gi|167001910|ref|ZP_02267700.1| cardiolipin synthetase ybhO [Burkholderia mallei PRL-20] gi|254176706|ref|ZP_04883363.1| cardiolipin synthetase ybhO [Burkholderia mallei ATCC 10399] gi|254203716|ref|ZP_04910076.1| cardiolipin synthetase ybhO [Burkholderia mallei FMH] gi|254208691|ref|ZP_04915039.1| cardiolipin synthetase ybhO [Burkholderia mallei JHU] gi|121228754|gb|ABM51272.1| cardiolipin synthetase ybhO [Burkholderia mallei SAVP1] gi|147745228|gb|EDK52308.1| cardiolipin synthetase ybhO [Burkholderia mallei FMH] gi|147750567|gb|EDK57636.1| cardiolipin synthetase ybhO [Burkholderia mallei JHU] gi|160697747|gb|EDP87717.1| cardiolipin synthetase ybhO [Burkholderia mallei ATCC 10399] gi|238523666|gb|EEP87103.1| cardiolipin synthetase YbhO [Burkholderia mallei GB8 horse 4] gi|243062319|gb|EES44505.1| cardiolipin synthetase ybhO [Burkholderia mallei PRL-20] Length = 424 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGETRHRLAQLRQMFLQERGSASRLAFTSGNEVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|306824441|ref|ZP_07457787.1| P-ATPase superfamily cation transporter ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433228|gb|EFM36198.1| P-ATPase superfamily cation transporter ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 761 Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + + + D E+ +++ Sbjct: 383 FFGAYEFLGFTQAMDAYYEHLKQQGFRILSLAHSKDQITSPDDMELLGHVVLSDEIKDNT 442 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + + F G V + G A F + +D K RV +E I Sbjct: 443 KEIFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDEDFERVVLEHDI 502 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q +K+V Sbjct: 503 FGRVTP-----EQKQKMV 515 >gi|297569411|ref|YP_003690755.1| ribosomal protein L24 [Desulfurivibrio alkaliphilus AHT2] gi|296925326|gb|ADH86136.1| ribosomal protein L24 [Desulfurivibrio alkaliphilus AHT2] Length = 111 Score = 35.0 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 +V +RV V G G V +D ++ R V+ + + R T Sbjct: 5 KTHIKVNDRVEVIAGGDKGRVGKVIRIDRKRGRAVVDKINMIKRHTK 51 >gi|224011806|ref|XP_002294556.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969576|gb|EED87916.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 420 Score = 35.0 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV-EVVIFGRVTPVELAYNQ 172 + + E GE+V + +G + ++ +D+ K R + V VEL Y Sbjct: 359 QDDLETVIPKETGEKVRILNGKYRGKKARLEKLDKTKYRAELRLVD---DDRIVELDYED 415 Query: 173 VEKI 176 K+ Sbjct: 416 FSKL 419 >gi|209867662|gb|ACI90350.1| T54 protein-like protein [Philodina roseola] Length = 384 Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG---RVTPVELAYNQVEKI 176 E G V + GP+A G ++ ++E+ SR+ V + I G + + ++ V+ + Sbjct: 244 MEKGAFVLIEKGPYADQYGTIECIEEDVSRLTVALAISGTNKKKQTISISQYHVKLV 300 >gi|39971719|ref|XP_367250.1| hypothetical protein MGG_07175 [Magnaporthe oryzae 70-15] gi|145019659|gb|EDK03887.1| hypothetical protein MGG_07175 [Magnaporthe oryzae 70-15] Length = 403 Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRV 153 VG+RV V +GPF + ++ ++ + Sbjct: 136 VGDRVVVIEGPFKGQISTISQIEHDRGVL 164 >gi|329954527|ref|ZP_08295618.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] gi|328527495|gb|EGF54492.1| transcription termination/antitermination factor NusG [Bacteroides clarus YIT 12056] Length = 107 Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRF 60 M+ RW + E+K + RL+ +G P + V KG+ Sbjct: 7 MS-RWCALHTAPKSERK----LMQRLNAAG-----YTAFCPMQIVFKKWKGQTKEVFAPL 56 Query: 61 FPGYVLIK 68 FPG V ++ Sbjct: 57 FPGCVFVE 64 >gi|166031648|ref|ZP_02234477.1| hypothetical protein DORFOR_01348 [Dorea formicigenerans ATCC 27755] gi|166028625|gb|EDR47382.1| hypothetical protein DORFOR_01348 [Dorea formicigenerans ATCC 27755] Length = 103 Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 + G+ V V G G V VD + RV VE V + + T Sbjct: 7 KKGDTVKVIAGKDKDKEGKVIAVDHKNGRVTVEGVNMLTKHTK 49 >gi|315611908|ref|ZP_07886827.1| cation-transporting ATPase [Streptococcus sanguinis ATCC 49296] gi|315316086|gb|EFU64119.1| cation-transporting ATPase [Streptococcus sanguinis ATCC 49296] Length = 761 Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + ++ + + E+ I++ Sbjct: 383 FFGAYEFLGFTQPMDAYYEHLKQQGFRILTLAHSKDHITSPANMELLGHVILSDEIKDNT 442 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + F G V + G A F + +D K RV +E I Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDDDFERVVLEHEI 502 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q EK+V Sbjct: 503 FGRVTP-----EQKEKMV 515 >gi|303243490|ref|ZP_07329832.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1] gi|302486051|gb|EFL48973.1| ribosomal protein L24 [Methanothermococcus okinawensis IH1] Length = 120 Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F + G V VD + +++VE Sbjct: 46 PVRKGDVVKIMRGNFKNIEGEVSKVDYKSYKIYVE 80 >gi|257387887|ref|YP_003177660.1| ribosomal protein L24 [Halomicrobium mukohataei DSM 12286] gi|257170194|gb|ACV47953.1| ribosomal protein L24 [Halomicrobium mukohataei DSM 12286] Length = 120 Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + SV G+ V V G +A G V VD + + ++VE Sbjct: 34 EEYDQRSVRVNAGDTVEVLRGDYAGEEGEVVEVDLDDAAIYVE 76 >gi|167561590|ref|ZP_02354506.1| cardiolipin synthetase II [Burkholderia oklahomensis EO147] Length = 424 Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D+ + RV + Sbjct: 1 MSGKTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDDARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|325188020|emb|CCA22563.1| 39S ribosomal protein L24 putative [Albugo laibachii Nc14] Length = 169 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V V +GP G + V ++++V VE Sbjct: 31 GDFVEVINGPHKGKQGEIVGVIRDQNKVIVE 61 >gi|303390188|ref|XP_003073325.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506] gi|303302471|gb|ADM11965.1| 60S ribosomal protein L26 [Encephalitozoon intestinalis ATCC 50506] Length = 143 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 20/39 (51%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + G+ V V G F G++ +++ E +V+VE Sbjct: 45 FRTFPLKSGDTVLVKGGKFDGKEGVITSINYEDYKVYVE 83 >gi|297619577|ref|YP_003707682.1| ribosomal protein L24 [Methanococcus voltae A3] gi|297378554|gb|ADI36709.1| ribosomal protein L24 [Methanococcus voltae A3] Length = 119 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +S+ + G+ V V G F G V +V+ + V V Sbjct: 43 NSIPLKKGDLVKVMRGNFKGVEGEVTSVNYKNYNVVV 79 >gi|332170570|gb|AEE19825.1| ribosomal protein L24 [Krokinobacter diaphorus 4H-3-7-5] Length = 103 Score = 35.0 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V V EK++ VE Sbjct: 1 MTKLKIKTGDTVKVIAGDHKGSEGKVVKVFIEKNKAIVE 39 >gi|313673871|ref|YP_004051982.1| crispr-associated protein cas5 [Calditerrivibrio nitroreducens DSM 19672] gi|312940627|gb|ADR19819.1| CRISPR-associated protein Cas5 [Calditerrivibrio nitroreducens DSM 19672] Length = 224 Score = 35.0 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 +I+ + SN E K E I ++ L+ +I I + + SE + Y+ Sbjct: 95 HIIHIESNFENKINECIDKATRLGRMEDLINKIEIIT--SSEKKSNSCDLSEIKNLNYYI 152 Query: 66 LIKAV 70 + Sbjct: 153 YVPFD 157 >gi|240973532|ref|XP_002401490.1| G patch domain and KOW motifs-containing protein, putative [Ixodes scapularis] gi|215491031|gb|EEC00672.1| G patch domain and KOW motifs-containing protein, putative [Ixodes scapularis] Length = 266 Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVH 154 +++ V + + G V + G F G V+ +D++ RV Sbjct: 216 LSKPPPLVAKEEGDLVLRRGAYVRIEQGQFKDMYGQVEGLDDDNGRVI 263 >gi|171186000|ref|YP_001794919.1| 50S ribosomal protein L24P [Thermoproteus neutrophilus V24Sta] gi|170935212|gb|ACB40473.1| ribosomal protein L24 [Thermoproteus neutrophilus V24Sta] Length = 122 Score = 34.6 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD ++ R++VE Sbjct: 50 GDTVLILRGDFKGVTGKVVRVDLKRVRIYVE 80 >gi|312065458|ref|XP_003135800.1| hypothetical protein LOAG_00212 [Loa loa] gi|307769021|gb|EFO28255.1| hypothetical protein LOAG_00212 [Loa loa] Length = 1409 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%) Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 E + + ++ S F G+ V V DG + G V+NVD EK Sbjct: 722 QETSDDLKKELEGMKVKDLSYIFSPGDYVEVMDGELVNLRGRVQNVDGEK 771 >gi|312079500|ref|XP_003142201.1| KOW domain-containing protein family protein [Loa loa] gi|307762634|gb|EFO21868.1| KOW domain-containing protein family protein [Loa loa] Length = 279 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 11/154 (7%) Query: 25 RLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTPK 84 R R L +P E V V++ + +++ + Y P Sbjct: 9 RSVRRTYMELDYARHMPKEYVEKVKRTVPKKIYTNRYGAPDIVRWTLHPDDYVPTDGRPW 68 Query: 85 VIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFE-----VGERVCVSDGPFASF 139 +N D + ++ ++ E G+ V V G Sbjct: 69 --ELDAFEKNIQRAHDYHQHKLRHRFFELRHEEKVAIPAEEWTIFPGDLVQVMVGKDRGK 126 Query: 140 NGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQV 173 G+V +V++E + V V GR T + Y + Sbjct: 127 TGVVSHVNKETNAVFVR----GRHTKLVNDYENL 156 >gi|297567273|ref|YP_003686245.1| 50S ribosomal protein L24 [Meiothermus silvanus DSM 9946] gi|296851722|gb|ADH64737.1| ribosomal protein L24 [Meiothermus silvanus DSM 9946] Length = 113 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 S + + G+ V V G G VK V K V VE V I + Sbjct: 2 EKSKIHVKKGDTVVVVSGSHKGEKGKVKAVLPSKQAVIVEGVNIIKKAVR 51 >gi|126465927|ref|YP_001041036.1| 50S ribosomal protein L24P [Staphylothermus marinus F1] gi|218547136|sp|A3DNB8|RL24_STAMF RecName: Full=50S ribosomal protein L24P gi|126014750|gb|ABN70128.1| LSU ribosomal protein L24P [Staphylothermus marinus F1] Length = 152 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V + G + G V +D + R++VE Sbjct: 44 KLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVE 80 >gi|282880290|ref|ZP_06289004.1| transcription termination/antitermination factor NusG [Prevotella timonensis CRIS 5C-B1] gi|281305792|gb|EFA97838.1| transcription termination/antitermination factor NusG [Prevotella timonensis CRIS 5C-B1] Length = 204 Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY +++++ ++ ++ + LD+ + + V RK R R Sbjct: 33 WYALRLFTLKTQQVIDYLEE----HHLDYFIPMEYVD----VEDRKHRVQQKLRPVVRNL 84 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF- 123 + IK M++ I T ++ EI A+ P + Sbjct: 85 IFIKRTMSELSIRKIL-TEAPFKGSVIRKSREDSQYYEIPSRQMFEFQAMCNPEIVMRQY 143 Query: 124 --------EVGERVCVSDGPFASFNGIVKNVD 147 +VG V V GP +G + + Sbjct: 144 LSEAQAKLKVGTPVYVKYGPLKGLSGRLVRSN 175 >gi|262384935|ref|ZP_06078051.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|262293430|gb|EEY81382.1| transcriptional regulator [Bacteroides sp. 2_1_33B] Length = 172 Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIF 160 G+RV ++ GPF V V V V I Sbjct: 28 KGDRVRITSGPFTDMEAEVV-VQPGGGHKDVMVRIL 62 >gi|301098838|ref|XP_002898511.1| 39S ribosomal protein L24, mitochondrial, putative [Phytophthora infestans T30-4] gi|262104936|gb|EEY62988.1| 39S ribosomal protein L24, mitochondrial, putative [Phytophthora infestans T30-4] Length = 166 Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 G++V + GP G V +V + ++V VE V + Sbjct: 31 GDKVEIIAGPHKGTQGEVVSVVRDLNKVIVENVNM 65 >gi|66504222|ref|XP_392212.2| PREDICTED: probable 39S ribosomal protein L24, mitochondrial [Apis mellifera] Length = 253 Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%) Query: 71 MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVC 130 K + + P + S + E P+ F G+RV Sbjct: 38 PPGKPQFLPRKIVSRKKLHFSIHRPWTTSFSIENWFKKRREYIPIEPIKDWSFFRGDRVE 97 Query: 131 VSDGPFASFNGIVKNVDEEKSRVHV 155 V GP GIV+++ +E++ + V Sbjct: 98 VLTGPDKGKQGIVQDIIQERNWIIV 122 >gi|167835475|ref|ZP_02462358.1| cardiolipin synthetase II [Burkholderia thailandensis MSMB43] Length = 424 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGRTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|255946077|ref|XP_002563806.1| Pc20g13260 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588541|emb|CAP86655.1| Pc20g13260 [Penicillium chrysogenum Wisconsin 54-1255] Length = 148 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%) Query: 110 VEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 + + S EVG V + GPF + + + + V V Sbjct: 1 MADIDVKVSSWKLVEVGRLVLIRSGPFEGKLAAIVEIVDHR---RVLVD 46 >gi|323474760|gb|ADX85366.1| ribosomal protein L24 [Sulfolobus islandicus REY15A] gi|323477488|gb|ADX82726.1| ribosomal protein L24 [Sulfolobus islandicus HVE10/4] Length = 119 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G G V ++ R+ +E Sbjct: 41 RIRVRKGDTVRVMRGSHNGKEGKVTEINTRTGRLAIE 77 >gi|298530492|ref|ZP_07017894.1| peptidase M20 [Desulfonatronospira thiodismutans ASO3-1] gi|298509866|gb|EFI33770.1| peptidase M20 [Desulfonatronospira thiodismutans ASO3-1] Length = 383 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 3/121 (2%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 + S EK I L + G + E+ E ++ + + G+V Sbjct: 27 IYSPSGKEKDVQVYIEDWLKKEGFEVTRQEV---EEDRFNLLLTMGPKDPQVYLVGHVDT 83 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 A + V G E + + +RP + VGE Sbjct: 84 VADWDFDEEGPYEQGGIVRGLGSADMKGGCAAMVETWMALARAFEPAERPPVGLALVVGE 143 Query: 128 R 128 Sbjct: 144 E 144 >gi|126438537|ref|YP_001057730.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 668] gi|126218030|gb|ABN81536.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 668] Length = 424 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|124383902|ref|YP_001028290.1| cardiolipin synthetase II [Burkholderia mallei NCTC 10229] gi|126448273|ref|YP_001081934.1| cardiolipin synthetase ybhO [Burkholderia mallei NCTC 10247] gi|254360253|ref|ZP_04976523.1| cardiolipin synthetase ybhO [Burkholderia mallei 2002721280] gi|124291922|gb|ABN01191.1| cardiolipin synthetase II [Burkholderia mallei NCTC 10229] gi|126241143|gb|ABO04236.1| cardiolipin synthetase ybhO [Burkholderia mallei NCTC 10247] gi|148029493|gb|EDK87398.1| cardiolipin synthetase ybhO [Burkholderia mallei 2002721280] Length = 424 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|53718289|ref|YP_107275.1| putative phospholipase [Burkholderia pseudomallei K96243] gi|76808915|ref|YP_332267.1| cardiolipin synthetase II [Burkholderia pseudomallei 1710b] gi|126454347|ref|YP_001064975.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106a] gi|134279487|ref|ZP_01766199.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 305] gi|167718150|ref|ZP_02401386.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei DM98] gi|167737179|ref|ZP_02409953.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 14] gi|167814312|ref|ZP_02445992.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 91] gi|167822788|ref|ZP_02454259.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 9] gi|167844363|ref|ZP_02469871.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei B7210] gi|167892875|ref|ZP_02480277.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 7894] gi|167901361|ref|ZP_02488566.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei NCTC 13177] gi|167909591|ref|ZP_02496682.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 112] gi|167917606|ref|ZP_02504697.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei BCC215] gi|217419518|ref|ZP_03451024.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 576] gi|226196675|ref|ZP_03792255.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei Pakistan 9] gi|237810880|ref|YP_002895331.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei MSHR346] gi|242316076|ref|ZP_04815092.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106b] gi|254181769|ref|ZP_04888366.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1655] gi|254187699|ref|ZP_04894211.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei Pasteur 52237] gi|254196701|ref|ZP_04903125.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei S13] gi|254261391|ref|ZP_04952445.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1710a] gi|254296189|ref|ZP_04963646.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 406e] gi|52208703|emb|CAH34639.1| putative phospholipase [Burkholderia pseudomallei K96243] gi|76578368|gb|ABA47843.1| cardiolipin synthetase II [Burkholderia pseudomallei 1710b] gi|126227989|gb|ABN91529.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106a] gi|134248687|gb|EBA48769.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 305] gi|157805786|gb|EDO82956.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 406e] gi|157935379|gb|EDO91049.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei Pasteur 52237] gi|169653444|gb|EDS86137.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei S13] gi|184212307|gb|EDU09350.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1655] gi|217396822|gb|EEC36838.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 576] gi|225931206|gb|EEH27213.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei Pakistan 9] gi|237503507|gb|ACQ95825.1| cardiolipin synthetase YbhO [Burkholderia pseudomallei MSHR346] gi|242139315|gb|EES25717.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1106b] gi|254220080|gb|EET09464.1| cardiolipin synthetase ybhO [Burkholderia pseudomallei 1710a] Length = 424 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGETRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|167568826|ref|ZP_02361700.1| cardiolipin synthetase II [Burkholderia oklahomensis C6786] Length = 424 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGKTRHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|18313979|ref|NP_560646.1| 50S ribosomal protein L24P [Pyrobaculum aerophilum str. IM2] gi|46397697|sp|Q8ZTD4|RL24_PYRAE RecName: Full=50S ribosomal protein L24P gi|18161554|gb|AAL64828.1| ribosomal protein L24 [Pyrobaculum aerophilum str. IM2] Length = 123 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G F G V VD ++ R++VE Sbjct: 50 GDTVLILRGDFKGVTGKVVKVDLKRVRIYVE 80 >gi|224105299|ref|XP_002313759.1| global transcription factor group [Populus trichocarpa] gi|222850167|gb|EEE87714.1| global transcription factor group [Populus trichocarpa] Length = 1042 Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 VG + V GPF + G V ++ V VE+ Sbjct: 702 VGTTIKVRQGPFKGYRGRVVDIKG--QFVRVELE 733 >gi|167579869|ref|ZP_02372743.1| cardiolipin synthetase II [Burkholderia thailandensis TXDOH] Length = 424 Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGKARHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|83719800|ref|YP_441119.1| cardiolipin synthetase II [Burkholderia thailandensis E264] gi|257140219|ref|ZP_05588481.1| cardiolipin synthetase II [Burkholderia thailandensis E264] gi|83653625|gb|ABC37688.1| cardiolipin synthetase II [Burkholderia thailandensis E264] Length = 424 Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 SPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + Q+ + S + F G V + DG A F +++ +D + RV + Sbjct: 1 MSGKARHRLAQLRQMFLQERGSASRLAFTSGNAVRLCDGGAAFFPALIERIDAARERVAL 60 Query: 156 EVVIF-----GRVTP 165 E IF GR Sbjct: 61 ETYIFCDDAVGRAVS 75 >gi|163752906|ref|ZP_02160030.1| LSU ribosomal protein L24P [Kordia algicida OT-1] gi|161326638|gb|EDP97963.1| LSU ribosomal protein L24P [Kordia algicida OT-1] Length = 103 Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 ++ + + G+ V V G G V V EK++ VE V + Sbjct: 1 MTKLKIKSGDTVRVIAGDHKGSEGKVLTVLREKNKAIVEGVNM 43 >gi|291228206|ref|XP_002734070.1| PREDICTED: G patch domain and KOW motifs-like [Saccoglossus kowalevskii] Length = 515 Score = 34.6 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 F G V V+ GP + G ++ VDE+ SRV V+ I Sbjct: 230 EEEEPQGFARGVGVLVASGPHKNLYGKIEGVDEDNSRVLVKFAI 273 >gi|145343619|ref|XP_001416414.1| kin17-like protein [Ostreococcus lucimarinus CCE9901] gi|144576639|gb|ABO94707.1| kin17-like protein [Ostreococcus lucimarinus CCE9901] Length = 327 Score = 34.6 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 +V +G + V G A G V +VD + V + G ++ V K+ Sbjct: 260 RTVIPAIGASIKVIRGENAGCIGSVISVDASGGSLRVLLEGSGDEMN-TFSFEDVSKL 316 >gi|147919322|ref|YP_686942.1| 50S ribosomal protein L24P [uncultured methanogenic archaeon RC-I] gi|121682876|sp|Q0W1X7|RL24_UNCMA RecName: Full=50S ribosomal protein L24P gi|110622338|emb|CAJ37616.1| 50S ribosomal protein L24P [uncultured methanogenic archaeon RC-I] Length = 123 Score = 34.6 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 112 AAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + VG+ V V G A G V+ +D ++ +V VE Sbjct: 39 ELSKKYGRTARVIVGDTVKVMRGDAAGTEGKVREIDVKREKVVVE 83 >gi|242095074|ref|XP_002438027.1| hypothetical protein SORBIDRAFT_10g006840 [Sorghum bicolor] gi|241916250|gb|EER89394.1| hypothetical protein SORBIDRAFT_10g006840 [Sorghum bicolor] Length = 1025 Score = 34.6 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV 166 VG+ + + GP+ + G VK V + V VE+ ++ V Sbjct: 701 VGKCIKIKSGPYKGYRGRVKEVTG--ALVRVELDSLMKIVTV 740 >gi|170290957|ref|YP_001737773.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum OPF8] gi|170175037|gb|ACB08090.1| NusG antitermination factor [Candidatus Korarchaeum cryptofilum OPF8] Length = 159 Score = 34.6 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 31/145 (21%) Query: 8 VQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLI 67 V+V S E + + R+S +G + F Y+ + Sbjct: 11 VRVISGKEINIMRLLVSRVSSTG-------------------AKVRSIIFVPKFKNYLFV 51 Query: 68 KAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGE 127 +A ++ Y K + +P P + E + + + E G+ Sbjct: 52 EA---EREYEVRKLIAGLSKLRLASSSPVPPQEIE---------DILSSETAGMEIEPGD 99 Query: 128 RVCVSDGPFASFNGIVKNVDEEKSR 152 V + G F + +V E KS+ Sbjct: 100 IVKIIKGNFKGYRAVVIATPEGKSK 124 >gi|170580854|ref|XP_001895436.1| Micro-fibrillar-associated protein 1 C-terminus containing protein [Brugia malayi] gi|158597624|gb|EDP35722.1| Micro-fibrillar-associated protein 1 C-terminus containing protein [Brugia malayi] Length = 1533 Score = 34.6 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%) Query: 101 SEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEK 150 E + + ++ S F G+ V V+DG + G V++VD EK Sbjct: 408 QETSDDLKKELEGMKVKDLSCIFSPGDYVEVADGELVNLRGRVQSVDGEK 457 >gi|146298150|ref|YP_001192741.1| ribosomal protein L24 [Flavobacterium johnsoniae UW101] gi|189042323|sp|A5FMY9|RL24_FLAJO RecName: Full=50S ribosomal protein L24 gi|146152568|gb|ABQ03422.1| ribosomal protein L24 [Flavobacterium johnsoniae UW101] Length = 104 Score = 34.6 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G V V EK++ VE Sbjct: 1 MIKLKIKSGDIVRVIAGDHKGAEGKVLRVYREKNKAIVE 39 >gi|126662253|ref|ZP_01733252.1| 50S ribosomal protein L24 [Flavobacteria bacterium BAL38] gi|126625632|gb|EAZ96321.1| 50S ribosomal protein L24 [Flavobacteria bacterium BAL38] Length = 104 Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 + + + G+ V V G G + V EK++ VE V + + T Sbjct: 1 MIKLKIKSGDVVRVIAGDHKGSEGKIVRVLREKNKAIVEGVNMVSKHTK 49 >gi|302841412|ref|XP_002952251.1| plastid/chloroplast ribosomal protein L24 [Volvox carteri f. nagariensis] gi|300262516|gb|EFJ46722.1| plastid/chloroplast ribosomal protein L24 [Volvox carteri f. nagariensis] Length = 178 Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 4/90 (4%) Query: 67 IKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126 + T T V+ G E + + + + + G Sbjct: 17 VATGRTAAPRRLAPTTTHVVAAYGDLPKIGGGRKWEHFE----LGPSGKAVRVDMHVKKG 72 Query: 127 ERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + V V G G + V +K +V VE Sbjct: 73 DTVQVIAGKDKGKVGTIVKVLAKKGKVVVE 102 >gi|302801361|ref|XP_002982437.1| hypothetical protein SELMODRAFT_38165 [Selaginella moellendorffii] gi|300150029|gb|EFJ16682.1| hypothetical protein SELMODRAFT_38165 [Selaginella moellendorffii] Length = 153 Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V + G G VK V ++++V VE Sbjct: 18 GDKVKIITGNDKGLTGTVKEVFRKRNKVIVE 48 >gi|270292062|ref|ZP_06198277.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. M143] gi|270279590|gb|EFA25432.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. M143] Length = 761 Score = 34.6 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + ++ + ++ E+ +++ Sbjct: 383 FFGAYEFLGFTQPMDAYYEHLKQQGFRILTLAHSKDHITSPSEMELLGHVVLSDEIKDNT 442 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + F G V + G A F + +D K RV +E I Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSDDDFERVVLEHEI 502 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q +K+V Sbjct: 503 FGRVTP-----EQKQKMV 515 >gi|132819|sp|P11893|RK24_PEA RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor gi|20873|emb|CAA32185.1| unnamed protein product [Pisum sativum] Length = 194 Score = 34.6 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 21/74 (28%) Query: 82 TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141 T E + + + + + +VG+ V V G G Sbjct: 32 TLSPFLQGKPTEKKCLIVMKLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIG 91 Query: 142 IVKNVDEEKSRVHV 155 + + + S V V Sbjct: 92 EITKIFKHNSSVIV 105 >gi|325958543|ref|YP_004290009.1| 50S ribosomal protein L24 [Methanobacterium sp. AL-21] gi|325329975|gb|ADZ09037.1| ribosomal protein L24 [Methanobacterium sp. AL-21] Length = 117 Score = 34.6 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 114 VQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 Q S+ + G+ + V G F G ++ VD + RV +E Sbjct: 34 EQYKRRSLPVKKGDTIKVMRGDFKDHEGKIEKVDLKNYRVMIE 76 >gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] Length = 1853 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 2/91 (2%) Query: 58 RRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAA--VQ 115 + F Y L+ D + + L G V + + N Sbjct: 402 QNRFELYDLVCFGRKDFGLIVGMEKDESYKILKHGPEKPDVVTVALRDLKNGPTDMKFTA 461 Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNV 146 V + V V +GP GIVK + Sbjct: 462 LDHHKKTMSVNDTVKVLEGPLKDRQGIVKQI 492 >gi|330850872|ref|YP_004376622.1| 50S ribosomal protein L24 [Fistulifera sp. JPCC DA0580] gi|328835692|dbj|BAK18988.1| 50S ribosomal protein L24 [Fistulifera sp. JPCC DA0580] Length = 82 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 16/37 (43%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 + +VG+ V V G + G V ++ ++ V Sbjct: 5 QKIHVKVGDTVRVISGFSKNETGEVLRINRNTGKLIV 41 >gi|227827702|ref|YP_002829482.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.14.25] gi|229584906|ref|YP_002843408.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.16.27] gi|238619873|ref|YP_002914699.1| 50S ribosomal protein L24P [Sulfolobus islandicus M.16.4] gi|227459498|gb|ACP38184.1| ribosomal protein L24 [Sulfolobus islandicus M.14.25] gi|228019956|gb|ACP55363.1| ribosomal protein L24 [Sulfolobus islandicus M.16.27] gi|238380943|gb|ACR42031.1| ribosomal protein L24 [Sulfolobus islandicus M.16.4] Length = 119 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G G V ++ R+ +E Sbjct: 41 RIRVRKGDTVRVMRGSHNGKEGKVTEINTRTGRLAIE 77 >gi|325955003|ref|YP_004238663.1| ribosomal protein L24 [Weeksella virosa DSM 16922] gi|323437621|gb|ADX68085.1| ribosomal protein L24 [Weeksella virosa DSM 16922] Length = 104 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 ++ + + G+ V V G G V V K++ VE V I Sbjct: 1 MAKLKIKKGDNVVVLSGSHKGKTGTVVRVFPGKAKAIVEGVNI 43 >gi|312130538|ref|YP_003997878.1| lsu ribosomal protein l24p [Leadbetterella byssophila DSM 17132] gi|311907084|gb|ADQ17525.1| LSU ribosomal protein L24P [Leadbetterella byssophila DSM 17132] Length = 112 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G + V +K+RV VE Sbjct: 1 MERKFNKIPKLHVKSGDTVQVISGNSKGKTGKIVEVLVKKNRVVVE 46 >gi|83591265|ref|YP_431274.1| 50S ribosomal protein L24 [Moorella thermoacetica ATCC 39073] gi|109893291|sp|Q2RFQ8|RL24_MOOTA RecName: Full=50S ribosomal protein L24 gi|83574179|gb|ABC20731.1| LSU ribosomal protein L24P [Moorella thermoacetica ATCC 39073] Length = 108 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 V + G+ V V G A G V +V+ + RV VE V I R T Sbjct: 4 PRVHVKKGDTVMVITGKDAGKKGKVLSVEPARGRVVVEGVNIVKRHTR 51 >gi|289597182|ref|YP_003483878.1| ribosomal protein L24 [Aciduliprofundum boonei T469] gi|289534969|gb|ADD09316.1| ribosomal protein L24 [Aciduliprofundum boonei T469] Length = 156 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V V G F G V V+ + RV VE Sbjct: 46 KGDIVKVMRGKFKGHEGKVVKVNLKNMRVAVE 77 >gi|217075544|gb|ACJ86132.1| unknown [Medicago truncatula] Length = 194 Score = 34.3 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 22/74 (29%) Query: 82 TPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNG 141 T + + + + + + + +VG+ V V G G Sbjct: 32 TLSPLLPGKPTDKQCRIVMKLKRWEREECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIG 91 Query: 142 IVKNVDEEKSRVHV 155 V + + S + V Sbjct: 92 EVTKIFKHNSTIIV 105 >gi|313836035|gb|EFS73749.1| ribosomal protein L24 [Propionibacterium acnes HL037PA2] gi|314929574|gb|EFS93405.1| ribosomal protein L24 [Propionibacterium acnes HL044PA1] gi|314970541|gb|EFT14639.1| ribosomal protein L24 [Propionibacterium acnes HL037PA3] gi|328906216|gb|EGG25991.1| 50S ribosomal protein L24 [Propionibacterium sp. P08] Length = 122 Score = 34.3 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + S+ + G+RV V G G V +VD ++ RV VE V I Sbjct: 1 MKSLRIKKGDRVKVIAGNDKGTIGEVLSVDPKRERVVVEGVNI 43 >gi|32475069|ref|NP_868063.1| 50S ribosomal protein L24 [Rhodopirellula baltica SH 1] gi|46396792|sp|Q7UN09|RL24_RHOBA RecName: Full=50S ribosomal protein L24 gi|32445609|emb|CAD75610.1| probable 50S ribosomal protein L24 [Rhodopirellula baltica SH 1] gi|327540589|gb|EGF27164.1| 50S ribosomal protein L24 [Rhodopirellula baltica WH47] Length = 115 Score = 34.3 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 121 VFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + F V + V V G G + VD +K +V VE Sbjct: 1 MKFRVDDEVIVIAGADKGHRGKILKVDRDKDKVVVE 36 >gi|307702948|ref|ZP_07639895.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC family protein [Streptococcus oralis ATCC 35037] gi|307623341|gb|EFO02331.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC family protein [Streptococcus oralis ATCC 35037] Length = 742 Score = 34.3 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + ++ + E+ +++ Sbjct: 364 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 423 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + F G V + G A F + +D K RV +E I Sbjct: 424 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 483 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q +K+V Sbjct: 484 FGRVTP-----EQKQKMV 496 >gi|302766361|ref|XP_002966601.1| hypothetical protein SELMODRAFT_38168 [Selaginella moellendorffii] gi|300166021|gb|EFJ32628.1| hypothetical protein SELMODRAFT_38168 [Selaginella moellendorffii] Length = 153 Score = 34.3 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 126 GERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G++V + G G VK V ++++V VE Sbjct: 18 GDKVKIITGNDKGLTGTVKEVFRKRNKVIVE 48 >gi|168005708|ref|XP_001755552.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693259|gb|EDQ79612.1| predicted protein [Physcomitrella patens subsp. patens] Length = 391 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 108 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV---IFGRVT 164 V Q + +V ++G V + +G + N + ++D K V + GR+ Sbjct: 320 KHVLKVDQEELETVIPQIGGVVRIVNGAYRGSNARLLSIDTSKFAASVRIENGAFDGRII 379 Query: 165 PVELAYNQVEKIV 177 Y + KIV Sbjct: 380 TA--DYEDICKIV 390 >gi|46396694|sp|P60745|RL24_SPIKU RecName: Full=50S ribosomal protein L24 gi|34849403|gb|AAP58902.1| ribosomal protein L24 [Spiroplasma kunkelii CR2-3x] Length = 106 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ V F+ G+ V V G G + V EKSRV +E Sbjct: 1 MNKVKFKKGDLVKVIAGKHKGTEGPIIRVLREKSRVVIE 39 >gi|326941837|gb|AEA17733.1| HAD superfamily hydrolase [Bacillus thuringiensis serovar chinensis CT-43] Length = 261 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 S+ E + I + + GL +V R ++ N F Y+ + Sbjct: 81 SSFENTVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 132 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 + + T GE VT + M Q Sbjct: 133 IEALEEEFGKTVHPAKLFVFGEEEKIVTLDQELRDMFQ 170 >gi|224534748|ref|ZP_03675320.1| ribosomal protein L24 [Borrelia spielmanii A14S] gi|224513996|gb|EEF84318.1| ribosomal protein L24 [Borrelia spielmanii A14S] Length = 101 Score = 34.3 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++G+ V + G G + +++ +K++V VE Sbjct: 1 MKTKLKIGDSVKIISGKDKGRIGKIASINRKKNKVIVE 38 >gi|268316419|ref|YP_003290138.1| 50S ribosomal protein L24 [Rhodothermus marinus DSM 4252] gi|262333953|gb|ACY47750.1| ribosomal protein L24 [Rhodothermus marinus DSM 4252] Length = 118 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 17/46 (36%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G+ V V G G + V +K RV VE Sbjct: 1 MPRTKNKQPKLHVKRGDLVRVIAGNDKGKEGRILRVFPKKQRVIVE 46 >gi|322375798|ref|ZP_08050309.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. C300] gi|321279066|gb|EFX56108.1| cation-transporting ATPase, E1-E2 family [Streptococcus sp. C300] Length = 761 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + ++ + E+ +++ Sbjct: 383 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 442 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + F G V + G A F + +D K RV +E I Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 502 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q +K+V Sbjct: 503 FGRVTP-----EQKQKMV 515 >gi|110004240|emb|CAK98578.1| 50s ribosomal protein l24 [Spiroplasma citri] Length = 106 Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + V F+ G+ V V G G + V EKSRV +E Sbjct: 1 MDKVKFKKGDLVKVIAGKHKGTEGPIIRVLREKSRVVIE 39 >gi|124003673|ref|ZP_01688521.1| ribosomal protein L24 [Microscilla marina ATCC 23134] gi|123990728|gb|EAY30195.1| ribosomal protein L24 [Microscilla marina ATCC 23134] Length = 114 Score = 34.3 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 111 EAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + + G++V V G G V V EK+RV VE Sbjct: 1 MERKKNKQPKLHLKKGDKVRVIAGNSRGKEGDVLEVIIEKNRVVVE 46 >gi|300508649|pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). gi|300508704|pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3mr8. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s) Length = 109 Score = 34.3 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQ---VEK 175 + + G+ V V+ G + G VK V +K V VE V I + V Y Q +EK Sbjct: 3 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 62 >gi|221061477|ref|XP_002262308.1| ribosomal protein l24 [Plasmodium knowlesi strain H] gi|193811458|emb|CAQ42186.1| ribosomal protein l24, putative [Plasmodium knowlesi strain H] Length = 229 Score = 34.3 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 +VG+ V V GP+ G+V N++ +++ V V Sbjct: 55 NIKVGDLVKVIYGPYKDREGLVLNINTKRNTVIV 88 >gi|39996910|ref|NP_952861.1| hypothetical protein GSU1811 [Geobacter sulfurreducens PCA] gi|39983798|gb|AAR35188.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|307634933|gb|ADI84646.2| SPOR domain protein [Geobacter sulfurreducens KN400] Length = 260 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV 48 Y VQV S+ E+K ++I +L+ G VTE TIP + Sbjct: 190 YSVQVASSKERKDADAIRAKLAEKGFSAYVTESTIPGKGTWYR 232 >gi|297625793|ref|YP_003687556.1| 50S ribosomal protein L24 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921558|emb|CBL56112.1| 50S ribosomal protein L24 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 123 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 ++ + + G+RV V G G + VD RV V Sbjct: 1 MAKMKLKKGDRVQVIAGKDKGVVGEIIAVDPANERVTV 38 >gi|228941215|ref|ZP_04103768.1| hypothetical protein bthur0008_38540 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974147|ref|ZP_04134717.1| hypothetical protein bthur0003_39010 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980739|ref|ZP_04141044.1| hypothetical protein bthur0002_39040 [Bacillus thuringiensis Bt407] gi|228778908|gb|EEM27170.1| hypothetical protein bthur0002_39040 [Bacillus thuringiensis Bt407] gi|228785487|gb|EEM33496.1| hypothetical protein bthur0003_39010 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818374|gb|EEM64446.1| hypothetical protein bthur0008_38540 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 267 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 S+ E + I + + GL +V R ++ N F Y+ + Sbjct: 87 SSFENTVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 138 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 + + T GE VT + M Q Sbjct: 139 IEALEEEFGKTVHPAKLFVFGEEEKIVTLDQELRDMFQ 176 >gi|317491663|ref|ZP_07950098.1| transcription termination factor nusG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920097|gb|EFV41421.1| transcription termination factor nusG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 153 Score = 34.3 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 11/125 (8%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRF 60 WY+V ++A ++ L P R+ RK Sbjct: 1 MGWYLVCCKRGKIEQAKTTL---------SLLGVRTFCPMMRIEKKRKDSGGVRVKIEPM 51 Query: 61 FPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSS 120 F Y+ ++ + ++ +P V F+ G+ P + + I+ +M Q + + Sbjct: 52 FQPYLFVEFDPLEVNISSVNSSPGVSYFVRYGDEPRALPKALIDALMIQTYTQIAPADAE 111 Query: 121 VFFEV 125 V E Sbjct: 112 VQDEK 116 >gi|218236148|ref|YP_002368867.1| HAD-superfamily hydrolase, subfamily IIB [Bacillus cereus B4264] gi|218164105|gb|ACK64097.1| HAD-superfamily hydrolase, subfamily IIB [Bacillus cereus B4264] Length = 267 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 8/98 (8%) Query: 12 SNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVM 71 S+ E + I + + GL +V R ++ N F Y+ + Sbjct: 87 SSFENVVAQEIYRYIHKKGLADIV--------CANEQRYTKRKNEHHHNFEAYMGVHIAE 138 Query: 72 TDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQ 109 + + T G VT + M Q Sbjct: 139 IEALEEEFGKTVHPAKLFVFGGEEKIVTLDQELRDMFQ 176 >gi|60688161|gb|AAH91133.1| Cpb2 protein [Rattus norvegicus] Length = 421 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 3/123 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRFFPG 63 Y+++V S E + +I + + + V+ G+ R Sbjct: 157 YVLKV-SGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDF 215 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y++ + Y K+ N TD S Sbjct: 216 YIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGASSFSCSET 275 Query: 124 EVG 126 G Sbjct: 276 YCG 278 >gi|313818008|gb|EFS55722.1| ribosomal protein L24 [Propionibacterium acnes HL046PA2] Length = 122 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + S+ + G+RV V G G V +VD + RV VE V I Sbjct: 1 MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43 >gi|289427740|ref|ZP_06429452.1| ribosomal protein L24 [Propionibacterium acnes J165] gi|295131376|ref|YP_003582039.1| ribosomal protein L24 [Propionibacterium acnes SK137] gi|289159231|gb|EFD07423.1| ribosomal protein L24 [Propionibacterium acnes J165] gi|291375336|gb|ADD99190.1| ribosomal protein L24 [Propionibacterium acnes SK137] gi|313773086|gb|EFS39052.1| ribosomal protein L24 [Propionibacterium acnes HL074PA1] gi|313808828|gb|EFS47282.1| ribosomal protein L24 [Propionibacterium acnes HL087PA2] gi|313810378|gb|EFS48092.1| ribosomal protein L24 [Propionibacterium acnes HL083PA1] gi|313812286|gb|EFS50000.1| ribosomal protein L24 [Propionibacterium acnes HL025PA1] gi|313819921|gb|EFS57635.1| ribosomal protein L24 [Propionibacterium acnes HL036PA1] gi|313823411|gb|EFS61125.1| ribosomal protein L24 [Propionibacterium acnes HL036PA2] gi|313824883|gb|EFS62597.1| ribosomal protein L24 [Propionibacterium acnes HL063PA1] gi|313830125|gb|EFS67839.1| ribosomal protein L24 [Propionibacterium acnes HL007PA1] gi|313832604|gb|EFS70318.1| ribosomal protein L24 [Propionibacterium acnes HL056PA1] gi|314925777|gb|EFS89608.1| ribosomal protein L24 [Propionibacterium acnes HL036PA3] gi|314960857|gb|EFT04958.1| ribosomal protein L24 [Propionibacterium acnes HL002PA2] gi|314973026|gb|EFT17122.1| ribosomal protein L24 [Propionibacterium acnes HL053PA1] gi|314975522|gb|EFT19617.1| ribosomal protein L24 [Propionibacterium acnes HL045PA1] gi|314979736|gb|EFT23830.1| ribosomal protein L24 [Propionibacterium acnes HL072PA2] gi|314984898|gb|EFT28990.1| ribosomal protein L24 [Propionibacterium acnes HL005PA1] gi|314986065|gb|EFT30157.1| ribosomal protein L24 [Propionibacterium acnes HL005PA2] gi|314988680|gb|EFT32771.1| ribosomal protein L24 [Propionibacterium acnes HL005PA3] gi|315079839|gb|EFT51815.1| ribosomal protein L24 [Propionibacterium acnes HL078PA1] gi|315083207|gb|EFT55183.1| ribosomal protein L24 [Propionibacterium acnes HL027PA2] gi|315086839|gb|EFT58815.1| ribosomal protein L24 [Propionibacterium acnes HL002PA3] gi|315089932|gb|EFT61908.1| ribosomal protein L24 [Propionibacterium acnes HL072PA1] gi|315096746|gb|EFT68722.1| ribosomal protein L24 [Propionibacterium acnes HL038PA1] gi|327325160|gb|EGE66966.1| ribosomal protein L24 [Propionibacterium acnes HL096PA3] gi|327325210|gb|EGE67015.1| ribosomal protein L24 [Propionibacterium acnes HL096PA2] gi|327444011|gb|EGE90665.1| ribosomal protein L24 [Propionibacterium acnes HL043PA1] gi|327449361|gb|EGE96015.1| ribosomal protein L24 [Propionibacterium acnes HL013PA2] gi|327449411|gb|EGE96065.1| ribosomal protein L24 [Propionibacterium acnes HL043PA2] gi|328756294|gb|EGF69910.1| ribosomal protein L24 [Propionibacterium acnes HL020PA1] gi|328761372|gb|EGF74899.1| ribosomal protein L24 [Propionibacterium acnes HL099PA1] Length = 122 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + S+ + G+RV V G G V +VD + RV VE V I Sbjct: 1 MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43 >gi|153004784|ref|YP_001379109.1| ribosomal protein L24 [Anaeromyxobacter sp. Fw109-5] gi|166222024|sp|A7HBM9|RL24_ANADF RecName: Full=50S ribosomal protein L24 gi|152028357|gb|ABS26125.1| ribosomal protein L24 [Anaeromyxobacter sp. Fw109-5] Length = 104 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 125 VGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 G+ V + G G V + EK RV +E Sbjct: 6 KGDTVKIISGKEKGKQGKVLELLPEKGRVRIE 37 >gi|67482217|ref|XP_656458.1| transcription initiation factor SPT5 [Entamoeba histolytica HM-1:IMSS] gi|56473661|gb|EAL51076.1| transcription initiation factor SPT5, putative [Entamoeba histolytica HM-1:IMSS] Length = 774 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 23/34 (67%) Query: 116 RPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + S++F VG+RV V+DG +A+ GI++ + + Sbjct: 417 KEDVSIYFNVGDRVKVTDGMYANETGIIEAIKGD 450 >gi|313904941|ref|ZP_07838312.1| ribosomal protein L24 [Eubacterium cellulosolvens 6] gi|313470198|gb|EFR65529.1| ribosomal protein L24 [Eubacterium cellulosolvens 6] Length = 102 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 119 SSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTP 165 SV G+ V V G G V +VD +K +V VE V + + Sbjct: 1 MSVKIRKGDTVRVIAGKDKDKEGKVLSVDVQKRKVIVEGVNMITKSVK 48 >gi|16758414|ref|NP_446069.1| carboxypeptidase B2 precursor [Rattus norvegicus] gi|62899668|sp|Q9EQV9|CBPB2_RAT RecName: Full=Carboxypeptidase B2; AltName: Full=Carboxypeptidase R; Short=CPR; AltName: Full=Carboxypeptidase U; Short=CPU; AltName: Full=Thrombin-activable fibrinolysis inhibitor; Short=TAFI; Flags: Precursor gi|11526577|dbj|BAB18617.1| pre-procarboxypeptidase R [Rattus norvegicus] gi|78174369|gb|AAI07448.1| Carboxypeptidase B2 (plasma) [Rattus norvegicus] Length = 422 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 3/123 (2%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGR--KVNSERRFFPG 63 Y+++V S E + +I + + + V+ G+ R Sbjct: 158 YVLKV-SGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDF 216 Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123 Y++ + Y K+ N TD S Sbjct: 217 YIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGASSFSCSET 276 Query: 124 EVG 126 G Sbjct: 277 YCG 279 >gi|302664243|ref|XP_003023755.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517] gi|291187766|gb|EFE43137.1| KOW motif domain protein [Trichophyton verrucosum HKI 0517] Length = 364 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 90 GTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEE 149 + + + + + + + V V F G+RVC+ G G V VDEE Sbjct: 69 RNFGDRDVLYGTVTTNRLRMPKVPEAKRVKYVTFAPGDRVCMVRGRDKGKIGKVLQVDEE 128 Query: 150 KSRVHVE-VVIF 160 V VE V + Sbjct: 129 SQSVTVEGVNML 140 >gi|325294981|ref|YP_004281495.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065429|gb|ADY73436.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 756 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 122 FFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 + G V + + G V VD+E+ V V V++ +Q+E + Sbjct: 610 EVKPGNTVKLLK---SGRKGKVLEVDKERKVAKVLVGGL----KVDVKLSQIEPV 657 >gi|320451289|ref|YP_004203385.1| 50S ribosomal protein L24 [Thermus scotoductus SA-01] gi|320151458|gb|ADW22836.1| 50S ribosomal protein L24 [Thermus scotoductus SA-01] Length = 110 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPV 166 + + + G+ V V+ G + G VK V +K V VE V I + V Sbjct: 2 QAKLHVKKGDTVLVASGKYKGQVGKVKAVLPKKGAVIVEGVNIVKKAVRV 51 >gi|167752396|ref|ZP_02424523.1| hypothetical protein ALIPUT_00640 [Alistipes putredinis DSM 17216] gi|167660637|gb|EDS04767.1| hypothetical protein ALIPUT_00640 [Alistipes putredinis DSM 17216] Length = 107 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + + G+ V V+ G G V VD +K R VE V I Sbjct: 4 KLHIKKGDMVYVNAGDSKGQQGKVLKVDAQKQRAIVEGVNI 44 >gi|50843307|ref|YP_056534.1| 50S ribosomal protein L24 [Propionibacterium acnes KPA171202] gi|282855197|ref|ZP_06264529.1| ribosomal protein L24 [Propionibacterium acnes J139] gi|289424794|ref|ZP_06426576.1| ribosomal protein L24 [Propionibacterium acnes SK187] gi|81692388|sp|Q6A6N7|RL24_PROAC RecName: Full=50S ribosomal protein L24 gi|50840909|gb|AAT83576.1| 50S ribosomal protein L24 [Propionibacterium acnes KPA171202] gi|282581785|gb|EFB87170.1| ribosomal protein L24 [Propionibacterium acnes J139] gi|289154757|gb|EFD03440.1| ribosomal protein L24 [Propionibacterium acnes SK187] gi|313763226|gb|EFS34590.1| ribosomal protein L24 [Propionibacterium acnes HL013PA1] gi|313793269|gb|EFS41327.1| ribosomal protein L24 [Propionibacterium acnes HL110PA1] gi|313801087|gb|EFS42355.1| ribosomal protein L24 [Propionibacterium acnes HL110PA2] gi|313816563|gb|EFS54277.1| ribosomal protein L24 [Propionibacterium acnes HL059PA1] gi|313828375|gb|EFS66089.1| ribosomal protein L24 [Propionibacterium acnes HL063PA2] gi|313837960|gb|EFS75674.1| ribosomal protein L24 [Propionibacterium acnes HL086PA1] gi|314914343|gb|EFS78174.1| ribosomal protein L24 [Propionibacterium acnes HL005PA4] gi|314917663|gb|EFS81494.1| ribosomal protein L24 [Propionibacterium acnes HL050PA1] gi|314919605|gb|EFS83436.1| ribosomal protein L24 [Propionibacterium acnes HL050PA3] gi|314924173|gb|EFS88004.1| ribosomal protein L24 [Propionibacterium acnes HL001PA1] gi|314930196|gb|EFS94027.1| ribosomal protein L24 [Propionibacterium acnes HL067PA1] gi|314957197|gb|EFT01301.1| ribosomal protein L24 [Propionibacterium acnes HL027PA1] gi|314957773|gb|EFT01876.1| ribosomal protein L24 [Propionibacterium acnes HL002PA1] gi|314963531|gb|EFT07631.1| ribosomal protein L24 [Propionibacterium acnes HL082PA1] gi|314965083|gb|EFT09182.1| ribosomal protein L24 [Propionibacterium acnes HL082PA2] gi|314969886|gb|EFT13984.1| ribosomal protein L24 [Propionibacterium acnes HL037PA1] gi|314982263|gb|EFT26356.1| ribosomal protein L24 [Propionibacterium acnes HL110PA3] gi|315077153|gb|EFT49220.1| ribosomal protein L24 [Propionibacterium acnes HL053PA2] gi|315090450|gb|EFT62426.1| ribosomal protein L24 [Propionibacterium acnes HL110PA4] gi|315093685|gb|EFT65661.1| ribosomal protein L24 [Propionibacterium acnes HL060PA1] gi|315097974|gb|EFT69950.1| ribosomal protein L24 [Propionibacterium acnes HL059PA2] gi|315100617|gb|EFT72593.1| ribosomal protein L24 [Propionibacterium acnes HL046PA1] gi|315103978|gb|EFT75954.1| ribosomal protein L24 [Propionibacterium acnes HL050PA2] gi|315106062|gb|EFT78038.1| ribosomal protein L24 [Propionibacterium acnes HL030PA1] gi|315109221|gb|EFT81197.1| ribosomal protein L24 [Propionibacterium acnes HL030PA2] gi|327326700|gb|EGE68486.1| ribosomal protein L24 [Propionibacterium acnes HL103PA1] gi|327332720|gb|EGE74454.1| ribosomal protein L24 [Propionibacterium acnes HL097PA1] gi|327451432|gb|EGE98086.1| ribosomal protein L24 [Propionibacterium acnes HL087PA3] gi|327451593|gb|EGE98247.1| ribosomal protein L24 [Propionibacterium acnes HL092PA1] gi|327451880|gb|EGE98534.1| ribosomal protein L24 [Propionibacterium acnes HL083PA2] gi|328752094|gb|EGF65710.1| ribosomal protein L24 [Propionibacterium acnes HL087PA1] gi|328755510|gb|EGF69126.1| ribosomal protein L24 [Propionibacterium acnes HL025PA2] Length = 122 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVI 159 + S+ + G+RV V G G V +VD + RV VE V I Sbjct: 1 MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNI 43 >gi|281203415|gb|EFA77615.1| hypothetical protein PPL_12222 [Polysphondylium pallidum PN500] Length = 636 Score = 33.9 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 22/154 (14%) Query: 21 SIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80 ++ R+ + L+ R + + + + Y +K M D K Sbjct: 103 NLKDRIIQMNNQDLIE--------YTKRRSLKTLTDKEKEILLYKFVK-NMNDLNIDLQK 153 Query: 81 DTPKVIGFLGTGENPS---PVTDSEIEHIMNQVEAAVQRPVSSVFFEVGER----VCVSD 133 + + G ++ + + + + V + + + V + Sbjct: 154 NKFIIAAVSGGADSICNLSYLMNYCYFYRNDVVYSMALCFLLKGWCNRHGISLVAVTIDH 213 Query: 134 G---PFASFNGI---VKNVDEEKSRVHVEVVIFG 161 G P I ++ +D + + V++ FG Sbjct: 214 GLVPPSEDIVAIAENIRKIDADIQHIVVKIDWFG 247 >gi|291525802|emb|CBK91389.1| Transposase and inactivated derivatives [Eubacterium rectale DSM 17629] Length = 512 Score = 33.9 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 10/162 (6%) Query: 16 KKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKV 75 KK V + R + + E + K + + P Y I+ + Sbjct: 28 KKTVNRVLKRAKELDISWPLDESDTDAVLAEKFFPSVKQVTSNKRMPDYAYIRKEL--LR 85 Query: 76 YHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGP 135 K N Q + R + + GE+V V Sbjct: 86 NGVSKKLLWTEYMEDCRANGEEPLMYSQFCYRIQQDEQKHRATMHINRKPGEQVEVD--- 142 Query: 136 FASFNGIVKNVDEE---KSRVHVEVVIFGRVTPVE--LAYNQ 172 +A V + D K+ + V V+ + + T VE L Q Sbjct: 143 WAGDPATVIDPDTGEIIKAYIFVGVMTYSQYTYVEAFLDMKQ 184 >gi|293364700|ref|ZP_06611417.1| E1-E2 family cation-transporting ATPase [Streptococcus oralis ATCC 35037] gi|291316150|gb|EFE56586.1| E1-E2 family cation-transporting ATPase [Streptococcus oralis ATCC 35037] Length = 761 Score = 33.9 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 25/138 (18%) Query: 60 FFPGYVLIKAV--MTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEI--EHIMNQVEAAVQ 115 FF Y + M H + +++ + ++ + E+ +++ Sbjct: 383 FFGAYEFLGFTQPMDTYYEHLKQQGFRILTLAHSKDHIMSPANMELLGHVVLSDEIKDNT 442 Query: 116 RPVSSVFFEVGERVCVSDGPF----------ASFNGIVKNVDEEK------SRVHVEVVI 159 + F G V + G A F + +D K RV +E I Sbjct: 443 KETFDYFESQGVEVKIISGDNHVAVYGVARKAGFKEEARAIDMTKVSEQDFERVVLEHEI 502 Query: 160 FGRVTPVELAYNQVEKIV 177 FGRVTP Q +K+V Sbjct: 503 FGRVTP-----EQKQKMV 515 >gi|163786179|ref|ZP_02180627.1| 50S ribosomal protein L24 [Flavobacteriales bacterium ALC-1] gi|159878039|gb|EDP72095.1| 50S ribosomal protein L24 [Flavobacteriales bacterium ALC-1] Length = 103 Score = 33.9 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V V +K++ VE Sbjct: 1 MTKLKIKSGDTVKVIAGDHKGSEGKVLKVLIDKNKAIVE 39 >gi|225561038|gb|EEH09319.1| ribosomal protein L14 [Ajellomyces capsulatus G186AR] Length = 217 Score = 33.9 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%) Query: 107 MNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVV 158 N + S EVG V + GP+ ++ + + K V V Sbjct: 68 FNAMAQIDITTSSWKLVEVGRVVLIRSGPYTGKLAVIVEIIDHK---RVLVD 116 >gi|329963438|ref|ZP_08301013.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] gi|328528685|gb|EGF55646.1| transcription termination/antitermination factor NusG [Bacteroides fluxus YIT 12057] Length = 128 Score = 33.9 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 13/130 (10%) Query: 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGY 64 WY ++ E A+ + +P + + +RKG+K+ + Sbjct: 8 WYAMRATYRREPDAMRLLEKEK---------LGCFVPMQYKMCIRKGKKIRALVPVVHNL 58 Query: 65 VLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQR----PVSS 120 + + A ++ + T + D E++ + + Sbjct: 59 IFVHARPSEVQRVKSQVTYLQYITDTRSGKKIIIPDVEMQRFIAVAGSYNDHLLYFQPEE 118 Query: 121 VFFEVGERVC 130 + G +V Sbjct: 119 LNLSKGTKVR 128 >gi|132821|sp|P27683|RK24_SPIOL RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor gi|189096145|pdb|3BBO|W Chain W, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|170137|gb|AAA34042.1| ribosomal protein L24 [Spinacia oleracea] gi|47154906|emb|CAA31552.1| precursor ribosomal protein L24 homologue [Spinacia oleracea] Length = 191 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 20/64 (31%) Query: 92 GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKS 151 G +P + + + +VG+ V V G G + + + S Sbjct: 38 GHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNS 97 Query: 152 RVHV 155 V + Sbjct: 98 TVII 101 >gi|254495352|ref|ZP_05108276.1| 50S ribosomal protein L24 [Polaribacter sp. MED152] gi|85819706|gb|EAQ40863.1| 50S ribosomal protein L24 [Polaribacter sp. MED152] Length = 100 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + + G+ V V G G V + ++K RV VE Sbjct: 1 MKKFKLKSGDTVKVIAGDHKGSEGKVLQIIKDKDRVLVE 39 >gi|28377843|ref|NP_784735.1| ribosomal protein L24 [Lactobacillus plantarum WCFS1] gi|254556028|ref|YP_003062445.1| ribosomal protein L24 [Lactobacillus plantarum JDM1] gi|300767832|ref|ZP_07077742.1| 50S ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180022|ref|YP_003924150.1| ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum ST-III] gi|46396874|sp|Q88XX5|RL24_LACPL RecName: Full=50S ribosomal protein L24 gi|28270676|emb|CAD63582.1| ribosomal protein L24 [Lactobacillus plantarum WCFS1] gi|254044955|gb|ACT61748.1| ribosomal protein L24 [Lactobacillus plantarum JDM1] gi|300494817|gb|EFK29975.1| 50S ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045513|gb|ADN98056.1| ribosomal protein L24 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 103 Score = 33.9 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G++V V G G VK V K+R+ VE Sbjct: 4 KTGDKVRVISGKDRGQEGTVKKVISAKNRIVVE 36 >gi|149248452|ref|XP_001528613.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448567|gb|EDK42955.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 1058 Score = 33.9 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 25/144 (17%) Query: 6 YIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYV 65 Y ++ EK+ V + + + +I +R F GYV Sbjct: 276 YAIRCSPGKEKEIVRKLYEKKRTLERQNTPLDIL--------------TVFQRDSFRGYV 321 Query: 66 LIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEV 125 I+A D + ++ + D + + + Q S V + Sbjct: 322 YIEAKRPDAIDKALQGMVNIY-----------TRDKLLVSVKEYPDLLKQVKSSDVELKP 370 Query: 126 GERVCVSDGPFASFNGIVKNVDEE 149 G V ++ G + IV N+ E Sbjct: 371 GVYVRIARGKYKGDLAIVDNLSEN 394 >gi|298483360|ref|ZP_07001538.1| transcriptional regulator [Bacteroides sp. D22] gi|298270489|gb|EFI12072.1| transcriptional regulator [Bacteroides sp. D22] Length = 76 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Query: 2 TPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRK 50 + RWY+ V + EKK E RLS+ G+D V + + Sbjct: 24 SKRWYVALVRMHHEKKVSE----RLSKMGIDSFVPVQQQIHQWSDRRKM 68 >gi|46199619|ref|YP_005286.1| 50S ribosomal protein L24 [Thermus thermophilus HB27] gi|55981650|ref|YP_144947.1| 50S ribosomal protein L24 [Thermus thermophilus HB8] gi|45645195|sp|Q56435|RL24_THETH RecName: Full=50S ribosomal protein L24 gi|62287401|sp|Q5SHP9|RL24_THET8 RecName: Full=50S ribosomal protein L24 gi|81405584|sp|Q72I15|RL24_THET2 RecName: Full=50S ribosomal protein L24 gi|116668256|pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. gi|116668317|pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. gi|119389754|pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. gi|119389811|pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgp. gi|119389867|pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgr. gi|149240904|pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 gi|157836539|pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. gi|157836595|pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2. gi|160285446|pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh gi|209156538|pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156592|pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|211938875|pdb|2JL6|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 2 Of 4). This File Contains The 50s Subunit. gi|211938933|pdb|2JL8|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 4 Of 4). This File Contains The 50s Subunit. gi|218766815|pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766871|pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|226887454|pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887486|pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|226887543|pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887600|pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|237823586|pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823645|pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|260100030|pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule I. gi|260100086|pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule Ii. gi|261824544|pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 2 Of 4). gi|261824606|pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State. (Part 4 Of 4). gi|261824665|pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 2 Of 4). gi|261824724|pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 4 Of 4). gi|281307212|pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 2 Of 4) gi|281307270|pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 4 Of 4) gi|281307328|pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 2 Of 4) gi|281307386|pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 4 Of 4) gi|288965649|pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule I gi|288965681|pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule Ii. gi|288965713|pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule I. gi|288965745|pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule Ii gi|294979493|pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f (50s). gi|294979577|pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g (30s). gi|294979631|pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B. The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule A In The S Asymmetric Unit Is Deposited As 3i9d (30s) And 3i9e (50s) gi|294979685|pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A. The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule B In The S Asymmetric Unit Is Deposited As 3i9b (30s) And 3i9c (50s) gi|295982132|pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982191|pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|307568018|pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 2 Of 4) gi|307568076|pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 4 Of 4) gi|309320305|pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320335|pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320407|pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320437|pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320488|pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320539|pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320590|pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320641|pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|312207730|pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s Ribosome With A Gtp Analog gi|313754054|pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) gi|313754112|pdb|2XUX|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Post- Translocational Translocation Intermediate Ti(Post) gi|325533459|pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533518|pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533577|pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533636|pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533695|pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533754|pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533813|pdb|2Y17|Y Chain Y, Ef-Tu Complex 3 gi|325533872|pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|469676|emb|CAA83517.1| ribosomal protein L24 [Thermus thermophilus] gi|46197245|gb|AAS81659.1| LSU ribosomal protein L24P [Thermus thermophilus HB27] gi|55773063|dbj|BAD71504.1| 50S ribosomal protein L24 [Thermus thermophilus HB8] Length = 110 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE-VVIFGRVTPVELAYNQ---VEK 175 + + G+ V V+ G + G VK V +K V VE V I + V Y Q +EK Sbjct: 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 63 >gi|332042709|gb|EGI78909.1| ribosomal protein L24 [Lacinutrix algicola 5H-3-7-4] Length = 103 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 118 VSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 ++ + + G+ V V G G V+ V K++ VE Sbjct: 1 MTKLKIKSGDTVKVIAGDHKGSEGKVQKVLSGKNKAIVE 39 >gi|229579217|ref|YP_002837615.1| 50S ribosomal protein L24P [Sulfolobus islandicus Y.G.57.14] gi|229582031|ref|YP_002840430.1| 50S ribosomal protein L24P [Sulfolobus islandicus Y.N.15.51] gi|284997905|ref|YP_003419672.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5] gi|228009931|gb|ACP45693.1| ribosomal protein L24 [Sulfolobus islandicus Y.G.57.14] gi|228012747|gb|ACP48508.1| ribosomal protein L24 [Sulfolobus islandicus Y.N.15.51] gi|284445800|gb|ADB87302.1| ribosomal protein L24 [Sulfolobus islandicus L.D.8.5] Length = 119 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G G V ++ R+ +E Sbjct: 41 RIRVRKGDTVRVMRGNHNGKEGKVTEINTRTGRLAIE 77 >gi|118411070|ref|YP_874465.1| 50S ribosomal protein L24 [Phaeodactylum tricornutum] gi|125987567|sp|A0T0J0|RK24_PHATC RecName: Full=50S ribosomal protein L24, chloroplastic gi|116739817|gb|ABK20688.1| 50S ribosomal protein L24 [Phaeodactylum tricornutum] Length = 82 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 117 PVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHV 155 V ++G+ V V G + G V ++ + ++ V Sbjct: 3 QKQKVNVKIGDSVTVISGFHKNETGEVLKINRKNGKIIV 41 >gi|15897613|ref|NP_342218.1| 50S ribosomal protein L24P [Sulfolobus solfataricus P2] gi|284174937|ref|ZP_06388906.1| 50S ribosomal protein L24P [Sulfolobus solfataricus 98/2] gi|11134767|sp|Q9UX95|RL24_SULSO RecName: Full=50S ribosomal protein L24P gi|6015770|emb|CAB57597.1| ribosomal protein L24 (HMAL24) [Sulfolobus solfataricus P2] gi|13813876|gb|AAK41008.1| LSU ribosomal protein L24AB (rpl24AB) [Sulfolobus solfataricus P2] gi|261602380|gb|ACX91983.1| ribosomal protein L24 [Sulfolobus solfataricus 98/2] Length = 119 Score = 33.9 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVE 156 + G+ V V G + G V V+ + R+ +E Sbjct: 41 RIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIE 77 >gi|186505223|ref|NP_180968.2| structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor [Arabidopsis thaliana] gi|330253842|gb|AEC08936.1| Transcription elongation factor Spt5 [Arabidopsis thaliana] Length = 989 Score = 33.9 bits (76), Expect = 10.0, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 28/155 (18%) Query: 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFP 62 P+ ++V+ E++ + ++ G + + + Sbjct: 169 PKLWLVKCAIGREREVAVCLMQKIVDRGSEFKI-----------------RSAIALDHLQ 211 Query: 63 GYVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVF 122 YV I+A M V IK + + V E+ +++ ++ Sbjct: 212 NYVYIEADMEAHVKEAIKGMRNIYA----NQKILLVPIKEMTAVLS-------VESKAID 260 Query: 123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 V + G + V +VD + RV V++ Sbjct: 261 LSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKL 295 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.313 0.135 0.400 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,528,266,968 Number of Sequences: 13984884 Number of extensions: 70913413 Number of successful extensions: 168329 Number of sequences better than 10.0: 3241 Number of HSP's better than 10.0 without gapping: 2660 Number of HSP's successfully gapped in prelim test: 581 Number of HSP's that attempted gapping in prelim test: 162637 Number of HSP's gapped (non-prelim): 3539 length of query: 177 length of database: 4,792,584,752 effective HSP length: 129 effective length of query: 48 effective length of database: 2,988,534,716 effective search space: 143449666368 effective search space used: 143449666368 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 76 (33.9 bits)