RPSBLAST alignment of GI: 254780148 and protein with PDBid: 2oug

>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli} Length = 162
 Score =  112 bits (280), Expect = 6e-26
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 13/173 (7%)

Query: 4   RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
            WY++       ++A E          L+        P   +  + +G++       FP 
Sbjct: 3   SWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53

Query: 64  YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
           Y+ ++         TI  T  V  F+  G +P+ V  + I  +       +  P +    
Sbjct: 54  YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---P 110

Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
             G++V +++G F  F  I    D E  R  + + +  +     +   +  K+
Sbjct: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162