RPSBLAST alignment of GI: 254780148 and protein with PDBid: 2oug
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli} Length = 162
Score = 112 bits (280), Expect = 6e-26
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 13/173 (7%)
Query: 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPG 63
WY++ ++A E L+ P + + +G++ FP
Sbjct: 3 SWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53
Query: 64 YVLIKAVMTDKVYHTIKDTPKVIGFLGTGENPSPVTDSEIEHIMNQVEAAVQRPVSSVFF 123
Y+ ++ TI T V F+ G +P+ V + I + + P +
Sbjct: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---P 110
Query: 124 EVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176
G++V +++G F F I D E R + + + + + + K+
Sbjct: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162