Query gi|254780149|ref|YP_003064562.1| hypothetical protein CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 103 out of 909
Neff 5.6
Searched_HMMs 13730
Date Sun May 22 21:11:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780149.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 87.5 0.87 6.3E-05 22.7 8.1 48 9-56 2-52 (56)
2 d1jy1a2 d.136.1.3 (A:351-608) 6.0 53 0.0039 12.9 -0.1 13 21-33 88-100 (258)
3 d1unld_ a.74.1.1 (D:) CDK5 act 5.6 88 0.0064 11.7 1.9 12 10-21 136-147 (150)
4 d1m56d_ f.23.8.1 (D:) Bacteria 5.4 92 0.0067 11.6 3.1 15 33-47 26-40 (42)
5 d2gola1 a.61.1.1 (A:7-107) HIV 5.3 40 0.0029 13.6 -1.1 10 19-28 25-34 (101)
6 d1qled_ f.23.8.1 (D:) Bacteria 5.3 93 0.0068 11.5 2.6 14 33-46 27-40 (43)
7 d2bw3a1 a.270.1.1 (A:79-162) T 5.3 93 0.0068 11.5 1.0 15 52-66 36-50 (84)
8 d2axth1 f.23.33.1 (H:2-65) Pho 5.3 65 0.0047 12.4 -0.0 23 5-28 3-25 (64)
9 g1o7d.3 c.6.2.1 (A:51-342,B:34 4.5 86 0.0063 11.7 0.2 19 8-28 302-320 (330)
10 d1nekc_ f.21.2.2 (C:) Succinat 4.3 1.1E+02 0.008 11.1 4.6 27 25-51 101-127 (129)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=87.54 E-value=0.87 Score=22.67 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 999999999998734898899999999999999999---999999999999
Q gi|254780149|r 9 LNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSIS---SVFFLVIDQSIG 56 (67)
Q Consensus 9 ~~f~~ev~~ElkkV~WPt~~e~~~~T~~Vi~~~~i~---~~~i~~~D~~~~ 56 (67)
.+|++|.+.=+|+.+=|||+|-.+...+.-+-.++. +.++.++-..+.
T Consensus 2 k~F~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 2 KEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 52 (56)
T ss_dssp CHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 678999999999965998899999999999999999999999999999734
No 2
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.97 E-value=53 Score=12.87 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.7
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 7348988999999
Q gi|254780149|r 21 KIFWPSRSEVLVS 33 (67)
Q Consensus 21 kV~WPt~~e~~~~ 33 (67)
|+.|||.+|+.++
T Consensus 88 ~iifPT~~~Vr~S 100 (258)
T d1jy1a2 88 YLIYPSVENVRTS 100 (258)
T ss_dssp EEECCBHHHHHTS
T ss_pred EEECCCHHHHHCC
T ss_conf 8985897897406
No 3
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.61 E-value=88 Score=11.66 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999987
Q gi|254780149|r 10 NFFKQVRDESKK 21 (67)
Q Consensus 10 ~f~~ev~~Elkk 21 (67)
.||.|+.+|+|.
T Consensus 136 ~fFtevf~dLK~ 147 (150)
T d1unld_ 136 HYFTQVFSDLKN 147 (150)
T ss_dssp HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
T ss_conf 459999999985
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.36 E-value=92 Score=11.57 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780149|r 33 SVIVVIIMLSISSVF 47 (67)
Q Consensus 33 ~T~~Vi~~~~i~~~~ 47 (67)
.+++.+++.+++|++
T Consensus 26 ~~i~~i~~liflAi~ 40 (42)
T d1m56d_ 26 AAVVIVAALIFLALA 40 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999996
No 5
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=5.33 E-value=40 Score=13.56 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=5.7
Q ss_pred HHHCCCCCHH
Q ss_conf 9873489889
Q gi|254780149|r 19 SKKIFWPSRS 28 (67)
Q Consensus 19 lkkV~WPt~~ 28 (67)
+|+++|.+|+
T Consensus 25 lKHlvWasrE 34 (101)
T d2gola1 25 LKHIVWASRE 34 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 1455556778
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.29 E-value=93 Score=11.55 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780149|r 33 SVIVVIIMLSISSV 46 (67)
Q Consensus 33 ~T~~Vi~~~~i~~~ 46 (67)
.+++.+++.+++|+
T Consensus 27 ~~i~~i~~liflAi 40 (43)
T d1qled_ 27 VSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 7
>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=5.29 E-value=93 Score=11.55 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999997117
Q gi|254780149|r 52 DQSIGWLMHFILGIG 66 (67)
Q Consensus 52 D~~~~~~~~~i~~lg 66 (67)
|.+|..+++.++.+|
T Consensus 36 dsGlkklv~~fl~iG 50 (84)
T d2bw3a1 36 GSGFIDMIKFFIKVK 50 (84)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 522999999999983
No 8
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.26 E-value=65 Score=12.41 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 655999999999999873489889
Q gi|254780149|r 5 RLAVLNFFKQVRDESKKIFWPSRS 28 (67)
Q Consensus 5 ~~~i~~f~~ev~~ElkkV~WPt~~ 28 (67)
|+.+-+.+|-.-+|..||. |-+-
T Consensus 3 rT~lG~~LkplNSeyGKVa-PGWG 25 (64)
T d2axth1 3 RTWLGDILRPLNSEYGKVA-PGWG 25 (64)
T ss_dssp CCHHHHHHTTTTTCSSCCC-STTT
T ss_pred CCCHHHHCCCCCCCCCCCC-CCCC
T ss_conf 1505555045655457425-8867
No 9
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.51 E-value=86 Score=11.72 Aligned_cols=19 Identities=5% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999999999873489889
Q gi|254780149|r 8 VLNFFKQVRDESKKIFWPSRS 28 (67)
Q Consensus 8 i~~f~~ev~~ElkkV~WPt~~ 28 (67)
+-+||.++++| +..||+++
T Consensus 302 ~~eyf~~l~~~--~~~lp~~~ 320 (330)
T g1o7d.3 302 PACYLWELNKA--NLSWSVKK 320 (330)
T ss_dssp HHHHHHHHHHT--CCCBCEEC
T ss_pred HHHHHHHHHHH--CCCCCCCC
T ss_conf 99999999984--79998645
No 10
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=4.31 E-value=1.1e+02 Score=11.15 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988999999999999999999999999
Q gi|254780149|r 25 PSRSEVLVSVIVVIIMLSISSVFFLVI 51 (67)
Q Consensus 25 Pt~~e~~~~T~~Vi~~~~i~~~~i~~~ 51 (67)
++.+....+..++++.+++.+++++.+
T Consensus 101 ~~~~~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 101 ETFEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 468999999999999999999999999
Done!