RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780149|ref|YP_003064562.1| hypothetical protein
CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>gnl|CDD|181055 PRK07597, secE, preprotein translocase subunit SecE; Reviewed.
          Length = 64

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 10 NFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
           FFK V+ E KK+ WP+R E++ S IVV++ ++  ++FF ++D     L+  +
Sbjct: 12 KFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL 64


>gnl|CDD|162136 TIGR00964, secE_bact, preprotein translocase, SecE subunit,
          bacterial.  This model represents exclusively the
          bacterial (and some organellar) SecE protein. SecE is
          part of the core heterotrimer, SecYEG, of the Sec
          preprotein translocase system. Other components are the
          ATPase SecA, a cytosolic chaperone SecB, and an
          accessory complex of SecDF and YajC.
          Length = 55

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
          +  FFK+V+ E KK+ WPSR E++   IVVI+ +   S+F   +D   G L+  I
Sbjct: 1  IFKFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLISLI 55


>gnl|CDD|180229 PRK05740, secE, preprotein translocase subunit SecE; Reviewed.
          Length = 92

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 7  AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILG 64
          A   F K+ R E +K+ WP+R E L + ++VI ++ + ++    +D  + WL+ FI G
Sbjct: 35 AFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFITG 92


>gnl|CDD|178555 PLN02972, PLN02972, Histidyl-tRNA synthetase.
          Length = 763

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1   MGVNRLAVLNFFKQVRDESKKIFWPSRSEVLVSVIV 36
           +G+ R  V    +Q  +E  ++  P+ +EVLVS+I 
Sbjct: 644 LGIER--VFAIMEQQEEEKSQVIRPTETEVLVSIIG 677


>gnl|CDD|179328 PRK01736, PRK01736, hypothetical protein; Reviewed.
          Length = 190

 Score = 25.7 bits (57), Expect = 2.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 56  GWLMHFILGIG 66
           GW+ HF+LG+G
Sbjct: 105 GWVNHFLLGLG 115


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.334    0.146    0.434 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,045,706
Number of extensions: 50214
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 48
Length of query: 67
Length of database: 5,994,473
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,173,369
Effective search space: 150027701
Effective search space used: 150027701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.0 bits)