RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780149|ref|YP_003064562.1| hypothetical protein
CLIBASIA_00140 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY
          complex, protein translocation; 9.60A {Escherichia
          coli} PDB: 3bo1_B (B:)
          Length = 65

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 7  AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          A + F ++ R E +K+ WP+R       + V  + ++      +I   I     +I GI 
Sbjct: 5  ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64

Query: 67 R 67
          +
Sbjct: 65 K 65


>3din_D Preprotein translocase subunit SECE; protein
          translocation, membrane protein, ATPase, ATP- binding,
          cytoplasm, inner membrane, nucleotide-binding; HET:
          ADP; 4.50A {Thermotoga maritima MSB8} (D:)
          Length = 65

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          +  FF++V  E+KKI WPSR E+L S  VV+++L+++SV+F V+D     ++  I    
Sbjct: 4  LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKAL 62


>3dl8_C SECE; RECA-type ATPase membrane protein translocation
          protein- protein complex, ATP-binding, cell membrane;
          7.50A {Aquifex aeolicus} (C:)
          Length = 65

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGIG 66
          +  F K VRDE K++ WPSR  V+ + I VII      V+  ++D +   ++ FIL + 
Sbjct: 4  LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSLR 62


>2akh_Z Preprotein translocase SECE subunit; protein transport,
           translocation, transmembrane, transport; 14.90A
           {Escherichia coli} PDB: 2aki_Z (Z:)
          Length = 111

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 7   AVLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFILGI 65
           A + F ++ R E +K+ WP+R E L + ++V  + ++ S+    +D  +  L+ FI G+
Sbjct: 51  ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 109


>2zjs_E Preprotein translocase SECE subunit; translocon, SEC,
          protein-conducting-channel, membrane, protein
          transport, translocation, transmembrane, transport;
          3.20A {Thermus thermophilus} PDB: 2zqp_E (E:)
          Length = 60

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 8  VLNFFKQVRDESKKIFWPSRSEVLVSVIVVIIMLSISSVFFLVIDQSIGWLMHFI 62
          ++ +F++ R E  ++ WP+R +V+     +++      V   + D    +L+  +
Sbjct: 5  LIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59


>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo
           sapiens} (A:129-241,A:317-406)
          Length = 203

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 7   AVLNFFKQVRDESKK 21
            ++NF K VR  ++K
Sbjct: 183 DLMNFLKTVRSTTEK 197


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.146    0.434 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 470,780
Number of extensions: 13649
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 4,956,049
Length adjustment: 34
Effective length of query: 33
Effective length of database: 3,806,679
Effective search space: 125620407
Effective search space used: 125620407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)