HHsearch alignment for GI: 254780150 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.99 E-value=7.1e-05 Score=49.29 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHCCCE--EEEEE-----------------E
Q ss_conf 3882799999046898878999999876444200131--2686---869862920--63789-----------------9
Q gi|254780150|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLRGIT--IATAH-----------------V 64 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~rGiT--i~~~~-----------------~ 64 (392)
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 89985899981567974868999999999749945898505678689999999998609853167788997999999999
Q ss_pred EEECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHH----HHCCCCCEEEEECCC
Q ss_conf 98219908999847873----0246779--8774002331452012344332106778888----631876023310023
Q gi|254780150|r 65 SYETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLA----RQIGISSIVVYMNKV 134 (392)
Q Consensus 65 ~~~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~----~~lgi~~iIv~iNKm 134 (392)
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A--~~~A~aF~e~l~it-GvI-lTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---A--VNTAKAFNEALGIT-GVI-LTKL 249 (451)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH---H--HHHHHHHHHHCCCC-EEE-EECC
T ss_conf 999749988999688733030999999999985539874899876444567---8--99999986626986-499-9714
Q ss_pred CCC
Q ss_conf 335
Q gi|254780150|r 135 DAV 137 (392)
Q Consensus 135 D~v 137 (392)
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred CCC
T ss_conf 678