HHsearch alignment for GI: 254780150 and conserved domain: COG3276
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=464.40 Aligned_cols=335 Identities=29% Similarity=0.475 Sum_probs=288.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLG 72 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCC---------CCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 6997400201430223330255---------3320545661584684205732577773688618984788999985405
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEE
Q ss_conf 02331452012344332106778888631876023310023335612221101232100111014532210233114676
Q gi|254780150|r 94 QADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g 173 (392)
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~----~i~~Il~~l~-l~~~~i~~~s~~~g 147 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQ----KIKQILADLS-LANAKIFKTSAKTG 147 (447)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH----HHHHHHHHCC-CCCCCCCCCCCCCC
T ss_conf 774589998475576643688999998619873289996223446788999----9999986502-00032301101257
Q ss_pred EECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEE
Q ss_conf 41144456521233203443102522221000011000000013554454301487424534896799950687432125
Q gi|254780150|r 174 LQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVK 253 (392)
Q Consensus 174 ~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~k 253 (392)
T Consensus 148 ----------~Gi~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~---k~v~ 214 (447)
T COG3276 148 ----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN---KEVR 214 (447)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEECCC---CEEE
T ss_conf ----------877999999987520055404786599975579951331799867864358878889990589---7689
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 41210012114432100136664112454322021177326777630001689997105678755551159789999541
Q gi|254780150|r 254 CTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDT 333 (392)
Q Consensus 254 v~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~ 333 (392)
T Consensus 215 VRsIq~~d~d~~~a~AG~RVglaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~----~~~~l~~~~~~hi~~g~ 290 (447)
T COG3276 215 VRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPL----FKKTLKQGQPVHIHVGL 290 (447)
T ss_pred EEEEEECCCCHHHCCCCCEEEEECCCCCHHHHHCCCEECCCCCCCCCEEEEEEEEECCC----CCCCCCCCCEEEEEEEC
T ss_conf 98632068645550122514542378877885112275157777762489999871401----03245789538999813
Q ss_pred EEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECC--EEEEEEEEEE
Q ss_conf 4777999961895570789769999997781775469849999899--6999899955
Q gi|254780150|r 334 ADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGG--KTVGAGLILE 389 (392)
Q Consensus 334 ~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~--~tig~G~I~~ 389 (392)
T Consensus 291 ~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~ 338 (447)
T COG3276 291 RSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLS 338 (447)
T ss_pred CCCCEEEEECCCC----------CEEEEECCCCCCCCCEEEEECCCCEEEECCCEEEE
T ss_conf 5663576531465----------40455045455657459997266135633645985