HHsearch alignment for GI: 254780150 and conserved domain: COG3523
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=91.37 E-value=0.17 Score=28.33 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC----C--HHH
Q ss_conf 9999904689887899999987--644420013126868698629206378999821-990899984787----3--024
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKY--YSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG----H--ADY 84 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~--~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG----H--~~f 84 (392)
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~-------~~~~~~g-T~~-----cdwwf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGA-------LGLAGPG-TRN-----CDWWFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred CEEEECCCCCCCCHHHHCCCCCCCCHHHHCC-------CCCCCCC-CCC-----CCCCCCCCEEEECCCCCEECCCCCCH
T ss_conf 0588548889840087515536661555331-------2226888-733-----57542553489858752443667502
Q ss_pred HHH-----------HHHHHHCCCCEEEEECCCC--CCCCCHHHH-HHH--------HHHCC--CCCEEEEECCCCCCC-C
Q ss_conf 677-----------9877400233145201234--433210677-888--------86318--760233100233356-1
Q gi|254780150|r 85 VKN-----------MITGATQADGAILVCAAED--GPKPQTREH-ILL--------ARQIG--ISSIVVYMNKVDAVD-D 139 (392)
Q Consensus 85 ~~~-----------mi~g~~~~D~ailvVda~~--G~~~QT~eh-~~l--------~~~lg--i~~iIv~iNKmD~v~-~ 139 (392)
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~GF 272 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCH
T ss_conf 34888999888999735578886379997899973899999999999999999999984156776-38998621002157
Q ss_pred HHHHHHC
Q ss_conf 2221101
Q gi|254780150|r 140 DELLDIS 146 (392)
Q Consensus 140 ~~~~~~i 146 (392)
T Consensus 273 ~efF~~l 279 (1188)
T COG3523 273 EEFFGSL 279 (1188)
T ss_pred HHHHHCC
T ss_conf 9987333