HHsearch alignment for GI: 254780150 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=2.1e-44 Score=294.42 Aligned_cols=273 Identities=25% Similarity=0.363 Sum_probs=197.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHH----------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf 9999904689887899999987----------644420013126868698629206378999821990899984787302
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKY----------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~----------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~ 83 (392)
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCCC
T ss_conf 03688568888511889999723034305501222577634227788887568558765787603884886147998654
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 46779877400233145201234433210677888863187602331002333561--2221101232100111014532
Q gi|254780150|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~----~~Pi 168 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQ----CAPI 168 (528)
T ss_pred CCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCC----EECC
T ss_conf 323678999864104689860358668899999998505984-69975023656688689999999985775----0355
Q ss_pred EEECCCCEEEE----------------------------EEE--------CCC---------------------------
Q ss_conf 21023311467----------------------------641--------144---------------------------
Q gi|254780150|r 162 DTPIIRGSALC----------------------------ALQ--------GTN--------------------------- 178 (392)
Q Consensus 162 ~~pii~~sa~~----------------------------g~~--------~~n--------------------------- 178 (392)
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred CCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
T ss_conf 24456885643223503587998426777654434444578886777762447999999999999741332088988569
Q ss_pred --------CCCCCCCCCCHHHHHHCCCCCCCC-CCC-----------CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf --------456521233203443102522221-000-----------011000000013554454301487424534896
Q gi|254780150|r 179 --------KELGEDSIHALMKAVDTHIPTPQR-SLD-----------APFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGS 238 (392)
Q Consensus 179 --------~~~~~~~~~~Ll~~i~~~~~~p~~-~~~-----------~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd 238 (392)
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRV~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 60115703323115889999999963899865446667316887754348999974899433420367863056435886
Q ss_pred EEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf 799950687432125412100-121144321001366641124543220211773267
Q gi|254780150|r 239 DVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295 (392)
Q Consensus 239 ~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~ 295 (392)
T Consensus 329 k~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhGt~~IGDT~t~Ge 382 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGE 382 (528)
T ss_pred EEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECC----CCCCEEECCEECCCC
T ss_conf 533024487256161076764216657542687767146----787213266631585