HHsearch alignment for GI: 254780150 and conserved domain: COG5258
>COG5258 GTPBP1 GTPase [General function prediction only].
Probab=100.00 E-value=0 Score=459.92 Aligned_cols=363 Identities=29% Similarity=0.440 Sum_probs=312.7
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHCCCEEEEEEEEEEC------------------
Q ss_conf 38827999990468988789999998764442--0013126868698629206378999821------------------
Q gi|254780150|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEK--KEYGDIDSAPEEKLRGITIATAHVSYET------------------ 68 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~--~~~~~~D~~~~E~~rGiTi~~~~~~~~~------------------ 68 (392)
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHH
T ss_conf 99638999742445786359878984577788840211345416777616532226999972499267605852077776
Q ss_pred -----CCEEEEEEECCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf -----9908999847873024677987740--023314520123443321067788886318760233100233356122
Q gi|254780150|r 69 -----DKRFYSHIDCPGHADYVKNMITGAT--QADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 69 -----~~~~i~iiD~PGH~~f~~~mi~g~~--~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~dd- 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPDD- 271 (527)
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCHH-
T ss_conf 7665203089998537862789988888732666627999981677303306765656461697-79999952568278-
Q ss_pred HHHHCCCCCCEEEEEEE--------------------EEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 21101232100111014--------------------532-210233114676411444565212332034431025222
Q gi|254780150|r 142 LLDISEYEIRDLLKEHK--------------------YSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 142 ~~~~i~~~i~~~l~~~~--------------------~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg-----------~GldlL~e~f~~Lp~r 340 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG-----------EGLDLLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCC-----------CCHHHHHHHHHHCCCC
T ss_conf 89999999999999743465355055326776543323782577999822457-----------5389999999749850
Q ss_pred CC-CCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 21-0000110000000135544543014874245348967999506-874321254121001211443210013666411
Q gi|254780150|r 201 QR-SLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR 278 (392)
Q Consensus 201 ~~-~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk 278 (392)
T Consensus 341 r~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~ 420 (527)
T COG5258 341 RRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALK 420 (527)
T ss_pred CCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEEEC
T ss_conf 02477897289987567774257898613776166059879974578995799999999976677032357758999962
Q ss_pred CCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEE
Q ss_conf 24543220211773267776300016899971056787555511597899995414777999961895570789769999
Q gi|254780150|r 279 GVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLE 358 (392)
Q Consensus 279 gi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~ 358 (392)
T Consensus 421 gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~-----HPT~I~aGye~v~H~etI~e~~~f~~i-d~~~L~~GD~g~vr 494 (527)
T COG5258 421 GVEKEELERGMVLSAGADPKAVREFDAEVLVLR-----HPTTIRAGYEPVFHYETIREAVYFEEI-DKGFLMPGDRGVVR 494 (527)
T ss_pred CCCHHHHHCCEEECCCCCCHHHHEECCEEEEEE-----CCCEEECCCEEEEEEEEEEHEEEEEEC-CCCCCCCCCCCEEE
T ss_conf 668778734517527999604440112299994-----785775372356675470000589872-54544578864499
Q ss_pred EEEC-CCEEECCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 9977-81775469849999899699989995531
Q gi|254780150|r 359 VELI-YPIAMEPNQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 359 l~l~-~pi~~e~~~rfilRd~~~tig~G~I~~v~ 391 (392)
T Consensus 495 ~~fkyrP~~v~eGQ~fvFRe-GrskgvG~v~~~~ 527 (527)
T COG5258 495 MRFKYRPHHVEEGQKFVFRE-GRSKGVGRVIRVD 527 (527)
T ss_pred EEEEECCHHHCCCCEEEEEC-CCCCCCEEEECCC
T ss_conf 99971711120583899942-7776534774159