HHsearch alignment for GI: 254780150 and conserved domain: cd00157

>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.83  E-value=1e-08  Score=73.10  Aligned_cols=145  Identities=20%  Similarity=0.188  Sum_probs=79.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf             79999904689887899999987644420013126868698629206-37899982199--0899984787302467798
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETDK--RFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         1 iKi~llGd~~VGKTsli~r~~~~~------------f~~~y--~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGK------------FPTEY--VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC------------CCCCC--CCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf             989999999966999999996299------------99875--8803466689999999999999998998710241322


Q ss_pred             HHHHCCCCEEEEECCCCCC-CCCHHH-HHH-HHHH-CCCCCEEEEECCCCCCCCHHHHH--------HCCCCCCEEEEEE
Q ss_conf             7740023314520123443-321067-788-8863-18760233100233356122211--------0123210011101
Q gi|254780150|r   90 TGATQADGAILVCAAEDGP-KPQTRE-HIL-LARQ-IGISSIVVYMNKVDAVDDDELLD--------ISEYEIRDLLKEH  157 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~-~~QT~e-h~~-l~~~-lgi~~iIv~iNKmD~v~~~~~~~--------~i~~~i~~~l~~~  157 (392)
T Consensus        67 ~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~  145 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI  145 (171)
T ss_pred             HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf             3444265899999689778899999999999998599986-899998710012300022331147515899999999984


Q ss_pred             EEEEEEECCCCEEEEEEE
Q ss_conf             453221023311467641
Q gi|254780150|r  158 KYSDDTPIIRGSALCALQ  175 (392)
Q Consensus       158 ~~~~~~pii~~sa~~g~~  175 (392)
T Consensus       146 ~---~~~f~E~SAk~g~n  160 (171)
T cd00157         146 G---AIGYMECSALTQEG  160 (171)
T ss_pred             C---CCEEEEECCCCCCC
T ss_conf             9---98899978789959