HHsearch alignment for GI: 254780150 and conserved domain: cd00157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.83 E-value=1e-08 Score=73.10 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=79.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206-37899982199--0899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~------------f~~~y--~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK------------FPTEY--VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC------------CCCCC--CCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 989999999966999999996299------------99875--8803466689999999999999998998710241322
Q ss_pred HHHHCCCCEEEEECCCCCC-CCCHHH-HHH-HHHH-CCCCCEEEEECCCCCCCCHHHHH--------HCCCCCCEEEEEE
Q ss_conf 7740023314520123443-321067-788-8863-18760233100233356122211--------0123210011101
Q gi|254780150|r 90 TGATQADGAILVCAAEDGP-KPQTRE-HIL-LARQ-IGISSIVVYMNKVDAVDDDELLD--------ISEYEIRDLLKEH 157 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~-~~QT~e-h~~-l~~~-lgi~~iIv~iNKmD~v~~~~~~~--------~i~~~i~~~l~~~ 157 (392)
T Consensus 67 ~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~ 145 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 3444265899999689778899999999999998599986-899998710012300022331147515899999999984
Q ss_pred EEEEEEECCCCEEEEEEE
Q ss_conf 453221023311467641
Q gi|254780150|r 158 KYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~ 175 (392)
T Consensus 146 ~---~~~f~E~SAk~g~n 160 (171)
T cd00157 146 G---AIGYMECSALTQEG 160 (171)
T ss_pred C---CCEEEEECCCCCCC
T ss_conf 9---98899978789959