HHsearch alignment for GI: 254780150 and conserved domain: cd01862
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.90 E-value=2.6e-09 Score=76.83 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=81.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK------------KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 98999998997899999999529------------889875775551699999999999999999969998311068899
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHHC------CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 740023314520123443321067788-----88631------8760233100233356122211012321001110145
Q gi|254780150|r 91 GATQADGAILVCAAEDGPKPQTREHIL-----LARQI------GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~l------gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
T Consensus 69 ~~~~a~~~ilvydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~p-iilvgNK~Dl~~~r~---V~~~e~~~~a~~~~- 140 (172)
T cd01862 69 FYRGADCCVLVYDVTN---PKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQ---VSTKKAQQWCQSNG- 140 (172)
T ss_pred HHHHCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCHHHCCC---CCHHHHHHHHHHCC-
T ss_conf 8652757999933899---899999999999999972767765763-899963368364189---99999999999769-
Q ss_pred EEEEECCCCEEEEEEE
Q ss_conf 3221023311467641
Q gi|254780150|r 160 SDDTPIIRGSALCALQ 175 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~ 175 (392)
T Consensus 141 --~~~~~E~SAk~~~n 154 (172)
T cd01862 141 --NIPYFETSAKEAIN 154 (172)
T ss_pred --CCEEEEECCCCCCC
T ss_conf --97899975267919