HHsearch alignment for GI: 254780150 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.1e-13 Score=104.01 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=89.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCC-----CHH--HHHHH
Q ss_conf 99046898878999999876444200131268686986292063789998219-90899984787-----302--46779
Q gi|254780150|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPG-----HAD--YVKNM 88 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PG-----H~~--f~~~m 88 (392)
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v-------~~-----~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~~~~~ 68 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------AN-----YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQF 68 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEE-------EC-----CCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 96999888999999996899603-------07-----8996761246799947996699995787545733787899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHH----------HHH-------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCC
Q ss_conf 877400233145201234433210677----------888-------863187602331002333561222110123210
Q gi|254780150|r 89 ITGATQADGAILVCAAEDGPKPQTREH----------ILL-------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIR 151 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh----------~~l-------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~ 151 (392)
T Consensus 69 l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp-~i~v~NK~Dl~~~~~~~~~~~~--- 144 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEELVR--- 144 (176)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC-EEEEEECEECCCHHHHHHHHHH---
T ss_conf 987410889999998987655454458999999999999711566555432697-1999968603470031599999---
Q ss_pred EEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 01110145322102331146764114445652123320344310
Q gi|254780150|r 152 DLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 152 ~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 145 -~~~~---~~~~~ii~iSA~~~~----------gi~~L~~~i~~ 174 (176)
T cd01881 145 -ELAL---EEGAEVVPISAKTEE----------GLDELIRAIYE 174 (176)
T ss_pred -HHHH---CCCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf -9974---689958999777887----------99999999996