HHsearch alignment for GI: 254780150 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.90 E-value=5.4e-09 Score=74.81 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467798774
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~F~~-----~~~~t~~----~~~~~---~~~~~~~v~l~i~DtaG~e~~~~~~~~~~ 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE-----NVPRVLP----EITIP---ADVTPERVPTTIVDTSSRPQDRANLAAEI 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCC-----CCCCCCC----CEEEE---EEECCEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 989999999989999999998497888-----7776345----68999---99889099999998998723024579873
Q ss_pred HCCCCEEEEECCCCCCC-CCHHHH-HHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 00233145201234433-210677-888863--18760233100233356122211012321001110145322102331
Q gi|254780150|r 93 TQADGAILVCAAEDGPK-PQTREH-ILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~-~QT~eh-~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
T Consensus 69 ~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~p-iilvGNK~DL~~~r~~~~-~e~~~~~~~~~~--~~~~~~~Et 144 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQAG-LEEEMLPIMNEF--REIETCVEC 144 (166)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCH-HHHHHHHHHHHH--CCCCEEEEE
T ss_conf 6898899997089877899999999999998689996-899998865400250335-889999999973--074889990
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780150|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 145 SAktg~n----------V~e~F~~~~k 161 (166)
T cd01893 145 SAKTLIN----------VSEVFYYAQK 161 (166)
T ss_pred CCCCCCC----------HHHHHHHHHH
T ss_conf 6588919----------8999999999