HHsearch alignment for GI: 254780150 and conserved domain: cd03700

>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.24  E-value=1e-06  Score=60.76  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=51.6

Q ss_pred             CCCCCEEEEEEECCCCCCCEEEEEECC------CCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHH
Q ss_conf             445430148742453489679995068------74321254121001----21144321001366641124543220211
Q gi|254780150|r  220 GRGTVVTGCIKRGRIKAGSDVEIIGMG------GKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGR  289 (392)
Q Consensus       220 g~G~Vv~GrV~sG~l~~Gd~i~i~p~~------~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGd  289 (392)
T Consensus        14 ~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnIv~i--~Gld--~~~~g~   89 (93)
T cd03700          14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT   89 (93)
T ss_pred             CCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCEEEE--ECCC--CCEEEE
T ss_conf             978999999986668089999997887888877613388986999995688999098889999999--7765--443775


Q ss_pred             EEE
Q ss_conf             773
Q gi|254780150|r  290 VVC  292 (392)
Q Consensus       290 vl~  292 (392)
T Consensus        90 ~~t   92 (93)
T cd03700          90 TAT   92 (93)
T ss_pred             EEE
T ss_conf             983