HHsearch alignment for GI: 254780150 and conserved domain: cd04091
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.51 E-value=6.5e-08 Score=68.14 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHE
Q ss_conf 000013554454301487424534896799950687432125412100-1211443210013666411245432202117
Q gi|254780150|r 212 IEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRV 290 (392)
Q Consensus 212 I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdv 290 (392)
T Consensus 5 vFK~~~d~~-G~lsf~RVysG~l~~g~~v~n~~~~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~--gl---~~~tGDT 78 (81)
T cd04091 5 AFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI---DCASGDT 78 (81)
T ss_pred EEEEECCCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE--CC---CCCCCCC
T ss_conf 998761899-88999999672887999999786891687202289978985076568799899998--99---9674776
Q ss_pred EEC
Q ss_conf 732
Q gi|254780150|r 291 VCA 293 (392)
Q Consensus 291 l~~ 293 (392)
T Consensus 79 L~d 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred CCC
T ss_conf 359