HHsearch alignment for GI: 254780150 and conserved domain: cd04108

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.82  E-value=1.3e-08  Score=72.53  Aligned_cols=145  Identities=17%  Similarity=0.088  Sum_probs=82.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHHH
Q ss_conf             99999046898878999999876444200131268686986292063789998219--9089998478730246779877
Q gi|254780150|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMITG   91 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~g   91 (392)
T Consensus         2 KivlvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~y   69 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKD------------VFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTY   69 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHH
T ss_conf             8999998998989999999639------------8899725634505899999999999999999899997466443777


Q ss_pred             HHCCCCEEEEECCCCCCC-CCHHHHHH-HHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             400233145201234433-21067788-88631--876023310023335612221101232100111014532210233
Q gi|254780150|r   92 ATQADGAILVCAAEDGPK-PQTREHIL-LARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR  167 (392)
Q Consensus        92 ~~~~D~ailvVda~~G~~-~QT~eh~~-l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~  167 (392)
T Consensus        70 ~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~-~~~~~~~~a~~~----~~~~~E  144 (170)
T cd04108          70 YRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL-MEQDAIKLAAEM----QAEYWS  144 (170)
T ss_pred             HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEE-EHHHHHHHHHHC----CCEEEE
T ss_conf             327875899997898789999999999999850899982999998413798755764-489999999877----987999


Q ss_pred             CEEEEEEE
Q ss_conf             11467641
Q gi|254780150|r  168 GSALCALQ  175 (392)
Q Consensus       168 ~sa~~g~~  175 (392)
T Consensus       145 ~SAk~g~n  152 (170)
T cd04108         145 VSALSGEN  152 (170)
T ss_pred             ECCCCCCC
T ss_conf             85578818