HHsearch alignment for GI: 254780150 and conserved domain: cd04125
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.82 E-value=8.7e-09 Score=73.55 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=83.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED------------EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 97999999997899999999519------------689986886540357999999999999999989997104578999
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 7400233145201234433-2106778888631--876023310023335612221101232100111014532210233
Q gi|254780150|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~---V~~~e~~~~a~~~----~~~~~E 141 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV---VDSNIAKSFCDSL----NIPFFE 141 (188)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf 863786799980389878999999999999987898662451001344766067---9999999999986----998999
Q ss_pred CEEEEEEEC
Q ss_conf 114676411
Q gi|254780150|r 168 GSALCALQG 176 (392)
Q Consensus 168 ~sa~~g~~~ 176 (392)
T Consensus 142 ~SAktg~nV 150 (188)
T cd04125 142 TSAKQSINV 150 (188)
T ss_pred ECCCCCCCH
T ss_conf 747889098