HHsearch alignment for GI: 254780150 and conserved domain: cd04125

>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.82  E-value=8.7e-09  Score=73.55  Aligned_cols=145  Identities=17%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf             79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         1 ~KivvvGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~   68 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTED------------EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNS   68 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf             97999999997899999999519------------689986886540357999999999999999989997104578999


Q ss_pred             HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             7400233145201234433-2106778888631--876023310023335612221101232100111014532210233
Q gi|254780150|r   91 GATQADGAILVCAAEDGPK-PQTREHILLARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR  167 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~  167 (392)
T Consensus        69 ~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~---V~~~e~~~~a~~~----~~~~~E  141 (188)
T cd04125          69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV---VDSNIAKSFCDSL----NIPFFE  141 (188)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf             863786799980389878999999999999987898662451001344766067---9999999999986----998999


Q ss_pred             CEEEEEEEC
Q ss_conf             114676411
Q gi|254780150|r  168 GSALCALQG  176 (392)
Q Consensus       168 ~sa~~g~~~  176 (392)
T Consensus       142 ~SAktg~nV  150 (188)
T cd04125         142 TSAKQSINV  150 (188)
T ss_pred             ECCCCCCCH
T ss_conf             747889098