HHsearch alignment for GI: 254780150 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.29 E-value=1.3e-06 Score=60.10 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=83.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-982199--08999847873024677987
Q gi|254780150|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 3 KivllGd~~VGKTsLi~r~~~~------------~f~~~--y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLG------------EFPEE--YHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9999998997689999999829------------89998--788667898999999999999999978887034546041
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC--CCCCEEEEECCCCCCCCHHH----H-H-HC-CCCCCEEEEE
Q ss_conf 74002331452012344332106778-----888631--87602331002333561222----1-1-01-2321001110
Q gi|254780150|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI--GISSIVVYMNKVDAVDDDEL----L-D-IS-EYEIRDLLKE 156 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l--gi~~iIv~iNKmD~v~~~~~----~-~-~i-~~~i~~~l~~ 156 (392)
T Consensus 69 ~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~~~~~~~~~p-iilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~ 144 (187)
T cd04129 69 SYSKAHVILIGFAVDTP---DSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EECCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 23388589997026986---6799999999999998587998-8999886001134112111223155789999999998
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 1453221023311467641144456521233203443102
Q gi|254780150|r 157 HKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
T Consensus 145 ~~~---~~y~EtSAk~~~----------nV~e~F~~~~r~ 171 (187)
T cd04129 145 IGA---KKYMECSALTGE----------GVDDVFEAATRA 171 (187)
T ss_pred CCC---CEEEEECCCCCC----------CHHHHHHHHHHH
T ss_conf 499---789996889997----------989999999999