HHsearch alignment for GI: 254780150 and conserved domain: cd04144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.55 E-value=2.3e-07 Score=64.72 Aligned_cols=136 Identities=23% Similarity=0.244 Sum_probs=80.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 99990468988789999998764442001312686869862920637899-9821--99089998478730246779877
Q gi|254780150|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
T Consensus 2 ivviGd~gVGKTsli~r~~~~------------~F~~~--y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~l~~~~ 67 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLN------------HFVET--YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQW 67 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHH
T ss_conf 899998998789999999629------------79988--6997247889999999999999999899973116788998
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHH-----H--HHH--C-CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 40023314520123443321067788-----8--863--1-876023310023335612221101232100111014532
Q gi|254780150|r 92 ATQADGAILVCAAEDGPKPQTREHIL-----L--ARQ--I-GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~~-----l--~~~--l-gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 68 ~r~a~~~ilVydvtd~---~SF~~l~~w~~~i~~~~~~~~~~~p-iiLVGNK~Dl~~~r~---V~~~e~~~~a~~~---- 136 (190)
T cd04144 68 IREGEGFILVYSITSR---STFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYERE---VSTEEGAALARRL---- 136 (190)
T ss_pred HCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCCHHHCCC---CCHHHHHHHHHHC----
T ss_conf 2367658999727977---8999999999999998533799952-895145535033057---8999999999980----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780150|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
T Consensus 137 ~~~~~E~SAk~~~n 150 (190)
T cd04144 137 GCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899973588809