HHsearch alignment for GI: 254780150 and conserved domain: cd04144

>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.55  E-value=2.3e-07  Score=64.72  Aligned_cols=136  Identities=23%  Similarity=0.244  Sum_probs=80.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             99990468988789999998764442001312686869862920637899-9821--99089998478730246779877
Q gi|254780150|r   15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKNMITG   91 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~mi~g   91 (392)
T Consensus         2 ivviGd~gVGKTsli~r~~~~------------~F~~~--y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~l~~~~   67 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLCLN------------HFVET--YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQW   67 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHH
T ss_conf             899998998789999999629------------79988--6997247889999999999999999899973116788998


Q ss_pred             HHCCCCEEEEECCCCCCCCCHHHHHH-----H--HHH--C-CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             40023314520123443321067788-----8--863--1-876023310023335612221101232100111014532
Q gi|254780150|r   92 ATQADGAILVCAAEDGPKPQTREHIL-----L--ARQ--I-GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD  161 (392)
Q Consensus        92 ~~~~D~ailvVda~~G~~~QT~eh~~-----l--~~~--l-gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~  161 (392)
T Consensus        68 ~r~a~~~ilVydvtd~---~SF~~l~~w~~~i~~~~~~~~~~~p-iiLVGNK~Dl~~~r~---V~~~e~~~~a~~~----  136 (190)
T cd04144          68 IREGEGFILVYSITSR---STFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYERE---VSTEEGAALARRL----  136 (190)
T ss_pred             HCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCCHHHCCC---CCHHHHHHHHHHC----
T ss_conf             2367658999727977---8999999999999998533799952-895145535033057---8999999999980----


Q ss_pred             EEECCCCEEEEEEE
Q ss_conf             21023311467641
Q gi|254780150|r  162 DTPIIRGSALCALQ  175 (392)
Q Consensus       162 ~~pii~~sa~~g~~  175 (392)
T Consensus       137 ~~~~~E~SAk~~~n  150 (190)
T cd04144         137 GCEFIEASAKTNVN  150 (190)
T ss_pred             CCEEEEECCCCCCC
T ss_conf             99899973588809