HHsearch alignment for GI: 254780150 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.18 E-value=6.3e-11 Score=86.80 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780150|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~--~~------~~-------~~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~ 71 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLG--QS------VT-------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 71 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CC-------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 88889999999999989999999669--98------76-------02626700799998988999998999974660657
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEE
Q ss_conf 774002331452012344-3321067788-88---6318760233100233356122211012321001110145-3221
Q gi|254780150|r 90 TGATQADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDT 163 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~ 163 (392)
T Consensus 72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~p-ilI~~NK~Dl~~~~~-~~ei----~~~l~l~~~~~~~~ 145 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-PHEI----QEKLGLTRIRDRNW 145 (168)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCE-EEEEEECCCCCCCCC-HHHH----HHHHCHHHHHCCCC
T ss_conf 64378866899983776789999999999997145227986-999997566777889-9999----99978765517980
Q ss_pred ECCCCEEEEEE
Q ss_conf 02331146764
Q gi|254780150|r 164 PIIRGSALCAL 174 (392)
Q Consensus 164 pii~~sa~~g~ 174 (392)
T Consensus 146 ~i~~~SA~tG~ 156 (168)
T cd04149 146 YVQPSCATSGD 156 (168)
T ss_pred EEEEEECCCCC
T ss_conf 99980687896