HHsearch alignment for GI: 254780150 and conserved domain: cd04149

>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.18  E-value=6.3e-11  Score=86.80  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf             88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780150|r   10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         7 kk~~kililG~~~sGKTsil~~l~~~--~~------~~-------~~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~   71 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLG--QS------VT-------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR   71 (168)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CC-------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf             88889999999999989999999669--98------76-------02626700799998988999998999974660657


Q ss_pred             HHHHCCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEE
Q ss_conf             774002331452012344-3321067788-88---6318760233100233356122211012321001110145-3221
Q gi|254780150|r   90 TGATQADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDT  163 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~  163 (392)
T Consensus        72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~p-ilI~~NK~Dl~~~~~-~~ei----~~~l~l~~~~~~~~  145 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-PHEI----QEKLGLTRIRDRNW  145 (168)
T ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCE-EEEEEECCCCCCCCC-HHHH----HHHHCHHHHHCCCC
T ss_conf             64378866899983776789999999999997145227986-999997566777889-9999----99978765517980


Q ss_pred             ECCCCEEEEEE
Q ss_conf             02331146764
Q gi|254780150|r  164 PIIRGSALCAL  174 (392)
Q Consensus       164 pii~~sa~~g~  174 (392)
T Consensus       146 ~i~~~SA~tG~  156 (168)
T cd04149         146 YVQPSCATSGD  156 (168)
T ss_pred             EEEEEECCCCC
T ss_conf             99980687896