HHsearch alignment for GI: 254780150 and conserved domain: cd04158

>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.95  E-value=2.4e-09  Score=77.05  Aligned_cols=139  Identities=13%  Similarity=0.085  Sum_probs=85.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf             99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780150|r   15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ   94 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~   94 (392)
T Consensus         2 IlilGl~~sGKTtil~~l~~~~~--------~~~-------~pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~   66 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDEF--------MQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLN   66 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC--------CCC-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCC
T ss_conf             99999899988999999957996--------897-------786881669999898899999899972446367875557


Q ss_pred             CCCEEEEECCCC-CCCCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCC--CCCEEEEEEEEEEEEECCC
Q ss_conf             233145201234-433210677888----863187602331002333561222110123--2100111014532210233
Q gi|254780150|r   95 ADGAILVCAAED-GPKPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEY--EIRDLLKEHKYSDDTPIIR  167 (392)
Q Consensus        95 ~D~ailvVda~~-G~~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~--~i~~~l~~~~~~~~~pii~  167 (392)
T Consensus        67 ~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~p-iLIlaNK~Dl~~~~~-~~ei~~~l~l~~~~----~~~~~~i~~  140 (169)
T cd04158          67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-VEEMTELLSLHKLC----CGRSWYIQG  140 (169)
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCC-HHHHHHHHCCHHHC----CCCCEEEEE
T ss_conf             627999998630677999999999997127537984-999973556777989-99999985705452----699629995


Q ss_pred             CEEEEEE
Q ss_conf             1146764
Q gi|254780150|r  168 GSALCAL  174 (392)
Q Consensus       168 ~sa~~g~  174 (392)
T Consensus       141 ~SA~tG~  147 (169)
T cd04158         141 CDARSGM  147 (169)
T ss_pred             EECCCCC
T ss_conf             5572795