HHsearch alignment for GI: 254780150 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.95 E-value=2.4e-09 Score=77.05 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=85.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780150|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~--------~~~-------~pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~ 66 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEF--------MQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLN 66 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC--------CCC-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 99999899988999999957996--------897-------786881669999898899999899972446367875557
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCC--CCCEEEEEEEEEEEEECCC
Q ss_conf 233145201234-433210677888----863187602331002333561222110123--2100111014532210233
Q gi|254780150|r 95 ADGAILVCAAED-GPKPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEY--EIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~--~i~~~l~~~~~~~~~pii~ 167 (392)
T Consensus 67 ~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~p-iLIlaNK~Dl~~~~~-~~ei~~~l~l~~~~----~~~~~~i~~ 140 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-VEEMTELLSLHKLC----CGRSWYIQG 140 (169)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCC-HHHHHHHHCCHHHC----CCCCEEEEE
T ss_conf 627999998630677999999999997127537984-999973556777989-99999985705452----699629995
Q ss_pred CEEEEEE
Q ss_conf 1146764
Q gi|254780150|r 168 GSALCAL 174 (392)
Q Consensus 168 ~sa~~g~ 174 (392)
T Consensus 141 ~SA~tG~ 147 (169)
T cd04158 141 CDARSGM 147 (169)
T ss_pred EECCCCC
T ss_conf 5572795