HHsearch alignment for GI: 254780150 and conserved domain: cd04174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=3.3e-06 Score=57.53 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=80.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-982199--0899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 14 ~KiVlVGD~~VGKTsLl~~~~~~------------~F~~~--y~pTv~~~~~~~i~v~~~~v~L~lWDTAGqE~y~~lr~ 79 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKD------------CYPET--YVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 89999998998999999999739------------89998--58836888899999999999999983899701003679
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH------HHHHH-CCCCCEEEEECCCCCCCCHHHH-HHCC--------CCCCEE
Q ss_conf 774002331452012344332106778------88863-1876023310023335612221-1012--------321001
Q gi|254780150|r 90 TGATQADGAILVCAAEDGPKPQTREHI------LLARQ-IGISSIVVYMNKVDAVDDDELL-DISE--------YEIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~------~l~~~-lgi~~iIv~iNKmD~v~~~~~~-~~i~--------~~i~~~ 153 (392)
T Consensus 80 ~yY~~a~~~ll~Fdvt~---~~Sfe~~~~~Wi~Ei~~~~p~~p-iiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~ 155 (232)
T cd04174 80 LCYSDSDAVLLCFDISR---PETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 97406878999996898---79999899999999998689997-899987602154757788997568887579999999
Q ss_pred EEEEEEEEEEECCCCEEEEEE
Q ss_conf 110145322102331146764
Q gi|254780150|r 154 LKEHKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~ 174 (392)
T Consensus 156 Ak~iga---~~Y~E~SA~tge 173 (232)
T cd04174 156 AKQLGA---EVYLECSAFTSE 173 (232)
T ss_pred HHHCCC---CEEEECCCCCCC
T ss_conf 997499---789987568666