HHsearch alignment for GI: 254780150 and conserved domain: cd04177

>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.68  E-value=2.6e-08  Score=70.61  Aligned_cols=139  Identities=18%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf             79999904689887899999987644420013126868698629206378---999821990899984787302467798
Q gi|254780150|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         2 fKivlvGd~~VGKTsli~rf~~~~f~--------~----~--y~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFI--------E----S--YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE   67 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC--------C----C--CCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf             19999899997799999999619389--------8----6--58833315999999999999999982788623334515


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHH-----HHHH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             774002331452012344332106778-----8886---31876023310023335612221101232100111014532
Q gi|254780150|r   90 TGATQADGAILVCAAEDGPKPQTREHI-----LLAR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD  161 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~  161 (392)
T Consensus        68 ~~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~DL~~~r~v---~~~e~~~~a~~~~---  137 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSE---ASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG---  137 (168)
T ss_pred             HHHCCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCHHHCCCC---CHHHHHHHHHHCC---
T ss_conf             451268667985368988---89999999999999851788874-8988731461213768---9999999999749---


Q ss_pred             EEECCCCEEEEEEE
Q ss_conf             21023311467641
Q gi|254780150|r  162 DTPIIRGSALCALQ  175 (392)
Q Consensus       162 ~~pii~~sa~~g~~  175 (392)
T Consensus       138 ~~~~~E~SAk~~~n  151 (168)
T cd04177         138 NVPFYETSARKRTN  151 (168)
T ss_pred             CCEEEEECCCCCCC
T ss_conf             97799962487846