HHsearch alignment for GI: 254780150 and conserved domain: cd04177
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.68 E-value=2.6e-08 Score=70.61 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378---999821990899984787302467798
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~~f~--------~----~--y~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--------E----S--YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--------C----C--CCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 19999899997799999999619389--------8----6--58833315999999999999999982788623334515
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH-----HHHH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 774002331452012344332106778-----8886---31876023310023335612221101232100111014532
Q gi|254780150|r 90 TGATQADGAILVCAAEDGPKPQTREHI-----LLAR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 68 ~~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~DL~~~r~v---~~~e~~~~a~~~~--- 137 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSE---ASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG--- 137 (168)
T ss_pred HHHCCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCHHHCCCC---CHHHHHHHHHHCC---
T ss_conf 451268667985368988---89999999999999851788874-8988731461213768---9999999999749---
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780150|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
T Consensus 138 ~~~~~E~SAk~~~n 151 (168)
T cd04177 138 NVPFYETSARKRTN 151 (168)
T ss_pred CCEEEEECCCCCCC
T ss_conf 97799962487846