HHsearch alignment for GI: 254780150 and conserved domain: pfam05783
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=97.83 E-value=1.9e-05 Score=52.85 Aligned_cols=141 Identities=26% Similarity=0.277 Sum_probs=78.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEE-CCCCHHHHHHH
Q ss_conf 79999904689887899999987644---420013126868698629206378999821990899984-78730246779
Q gi|254780150|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHID-CPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD-~PGH~~f~~~m 88 (392)
T Consensus 46 K~ILVLGd~~sGKttLi~kLQg~ed~kkG~gLeY~YldV~DedrDd------------~tRl~VWiLDgd~~~~~LLKfa 113 (490)
T pfam05783 46 KNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYLNVHDEDRDD------------QTRCNVWILDGDLYHKGLLKFA 113 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC------------CCCEEEEEECCCCCHHHHHCCC
T ss_conf 7289977898755899988527443466875433888512465441------------1002358844870111243157
Q ss_pred HHHHHCCCC-EEEEECCCCCCC--CCH-------HHHH------------------------------------------
Q ss_conf 877400233-145201234433--210-------6778------------------------------------------
Q gi|254780150|r 89 ITGATQADG-AILVCAAEDGPK--PQT-------REHI------------------------------------------ 116 (392)
Q Consensus 89 i~g~~~~D~-ailvVda~~G~~--~QT-------~eh~------------------------------------------ 116 (392)
T Consensus 114 Ln~~si~~TlIvI~lDms~PW~im~qL~~Wi~VL~~hi~sL~id~ee~~el~e~l~~~wq~Y~ep~d~~~gs~~~r~~~~ 193 (490)
T pfam05783 114 LNAESLADTLVIFVVDMSRPWTIMESLQKWASVLREHIDKLKIPPEEMRELEQRLVKDFQEYVEPGDDLPGSPQRRTPRL 193 (490)
T ss_pred CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 88545020289999725774789999999999999999874899999999999999999864242335788753357777
Q ss_pred ---------------HHHHHCCCCCEEEEECCCCCCC-------C-HHHHHHCCCCCCEEEEEEEEEEEEECCCCEE
Q ss_conf ---------------8886318760233100233356-------1-2221101232100111014532210233114
Q gi|254780150|r 117 ---------------LLARQIGISSIVVYMNKVDAVD-------D-DELLDISEYEIRDLLKEHKYSDDTPIIRGSA 170 (392)
Q Consensus 117 ---------------~l~~~lgi~~iIv~iNKmD~v~-------~-~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa 170 (392)
T Consensus 194 s~~~d~~v~LPLgeg~Lt~NLGiP-IvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyGA----ALiYTSv 265 (490)
T pfam05783 194 SGSDDDSVLLPLGENVLTHNLGIP-VVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYGA----ALIYTSV 265 (490)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC----EEEEEEC
T ss_conf 776666421468987100047987-79999464188887651262067789999999999986196----5788523