HHsearch alignment for GI: 254780150 and conserved domain: pfam09547

>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.26  E-value=0.059  Score=31.22  Aligned_cols=128  Identities=21%  Similarity=0.293  Sum_probs=66.0

Q ss_pred             HCCCCEEEEEEEECCCCCHHHHHHHHHHHH-----HHHHHCCCCCCCCHHHHHCCCEEEEE---E-----EEEE---CCC
Q ss_conf             103882799999046898878999999876-----44420013126868698629206378---9-----9982---199
Q gi|254780150|r    7 VRNKESLGLSTIGHVDHGKTTLTAAITKYY-----SEEKKEYGDIDSAPEEKLRGITIATA---H-----VSYE---TDK   70 (392)
Q Consensus         7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~-----~~~~~~~~~~D~~~~E~~rGiTi~~~---~-----~~~~---~~~   70 (392)
T Consensus        12 ~RT~GdIYiGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l~~~~~   90 (492)
T pfam09547        12 ERTNGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKLDDGLK   90 (492)
T ss_pred             HHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEECCCCE
T ss_conf             860896699962672067366999999985468889877877643037767-8998133368876653104888369844


Q ss_pred             EEEEEEECCCC--------H-----------------HHHHHHHHHHHC---CCCEEEEECCCCCCC-C--------CHH
Q ss_conf             08999847873--------0-----------------246779877400---233145201234433-2--------106
Q gi|254780150|r   71 RFYSHIDCPGH--------A-----------------DYVKNMITGATQ---ADGAILVCAAEDGPK-P--------QTR  113 (392)
Q Consensus        71 ~~i~iiD~PGH--------~-----------------~f~~~mi~g~~~---~D~ailvVda~~G~~-~--------QT~  113 (392)
T Consensus        91 ~kVRLiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEe  170 (492)
T pfam09547        91 FKVRLVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEE  170 (492)
T ss_pred             EEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             89999965256755755554689751304898788878688876465413315771449995688756766444235799


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             77888863187602331002333
Q gi|254780150|r  114 EHILLARQIGISSIVVYMNKVDA  136 (392)
Q Consensus       114 eh~~l~~~lgi~~iIv~iNKmD~  136 (392)
T Consensus       171 rvI~ELk~i~KP-FiillNs~~P  192 (492)
T pfam09547       171 RVIEELKEIGKP-FIILLNSQRP  192 (492)
T ss_pred             HHHHHHHHHCCC-EEEEEECCCC
T ss_conf             999999970998-8999838998