HHsearch alignment for GI: 254780150 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.26 E-value=0.059 Score=31.22 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=66.0
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHH-----HHHHHCCCCCCCCHHHHHCCCEEEEE---E-----EEEE---CCC
Q ss_conf 103882799999046898878999999876-----44420013126868698629206378---9-----9982---199
Q gi|254780150|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYY-----SEEKKEYGDIDSAPEEKLRGITIATA---H-----VSYE---TDK 70 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~-----~~~~~~~~~~D~~~~E~~rGiTi~~~---~-----~~~~---~~~ 70 (392)
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l~~~~~ 90 (492)
T pfam09547 12 ERTNGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKLDDGLK 90 (492)
T ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEECCCCE
T ss_conf 860896699962672067366999999985468889877877643037767-8998133368876653104888369844
Q ss_pred EEEEEEECCCC--------H-----------------HHHHHHHHHHHC---CCCEEEEECCCCCCC-C--------CHH
Q ss_conf 08999847873--------0-----------------246779877400---233145201234433-2--------106
Q gi|254780150|r 71 RFYSHIDCPGH--------A-----------------DYVKNMITGATQ---ADGAILVCAAEDGPK-P--------QTR 113 (392)
Q Consensus 71 ~~i~iiD~PGH--------~-----------------~f~~~mi~g~~~---~D~ailvVda~~G~~-~--------QT~ 113 (392)
T Consensus 91 ~kVRLiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEe 170 (492)
T pfam09547 91 FKVRLVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 89999965256755755554689751304898788878688876465413315771449995688756766444235799
Q ss_pred HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 77888863187602331002333
Q gi|254780150|r 114 EHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 114 eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
T Consensus 171 rvI~ELk~i~KP-FiillNs~~P 192 (492)
T pfam09547 171 RVIEELKEIGKP-FIILLNSQRP 192 (492)
T ss_pred HHHHHHHHHCCC-EEEEEECCCC
T ss_conf 999999970998-8999838998