HHsearch alignment for GI: 254780150 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.22 E-value=2.2e-06 Score=58.71 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=75.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECCC--EEEEEEECCCCHHHHHHHHHH-H
Q ss_conf 904689887899999987644420013126868698629206--37899982199--089998478730246779877-4
Q gi|254780150|r 18 IGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETDK--RFYSHIDCPGHADYVKNMITG-A 92 (392)
Q Consensus 18 iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~g-~ 92 (392)
T Consensus 1 vGD~gVGKTsli~R~~~~~------------F--~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~s-l~~~yy 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE------------F--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-LRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHHCCC------------C--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCC-CCHHHC
T ss_conf 9898878999999994099------------9--999788714898999999899899999998988700011-026550
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHH-----HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 002331452012344332106778-----88863-187602331002333561222110123210011101453221023
Q gi|254780150|r 93 TQADGAILVCAAEDGPKPQTREHI-----LLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~-----~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
T Consensus 66 r~a~~~IlvfDvt~~---~SF~~l~~W~~~l~~~~~~ip-iiLvGNK~DL~~r-~----V~~e~~~~a~~~----~~~y~ 132 (200)
T smart00176 66 IQGQCAIIMFDVTAR---VTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDR-K----VKAKSITFHRKK----NLQYY 132 (200)
T ss_pred CCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCC-C----CCHHHHHHHHHC----CCCEE
T ss_conf 578788999635877---899989999999998579998-8999988757404-3----659999999987----99789
Q ss_pred CCEEEEEEEC
Q ss_conf 3114676411
Q gi|254780150|r 167 RGSALCALQG 176 (392)
Q Consensus 167 ~~sa~~g~~~ 176 (392)
T Consensus 133 EtSAKt~~Nv 142 (200)
T smart00176 133 DISAKSNYNF 142 (200)
T ss_pred EEECCCCCCH
T ss_conf 8300469697