HHsearch alignment for GI: 254780150 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.15 E-value=2.7e-10 Score=82.95 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=88.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780150|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~--~~------~~~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r-~l~ 74 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLG--ES------VTT-------IPTIGFNVETVTYKNISFTVWDVGGQDKIR-PLW 74 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CCC-------CCCCCCEEEEEEECCEEEEEEECCCCCCCC-HHH
T ss_conf 88899999988999989999999659--97------775-------797881079999898999999899985455-367
Q ss_pred -HHHHCCCCEEEEECCCCC-CCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE-EEEEEEEEEE
Q ss_conf -774002331452012344-332106778888----631876023310023335612221101232100-1110145322
Q gi|254780150|r 90 -TGATQADGAILVCAAEDG-PKPQTREHILLA----RQIGISSIVVYMNKVDAVDDDELLDISEYEIRD-LLKEHKYSDD 162 (392)
Q Consensus 90 -~g~~~~D~ailvVda~~G-~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~-~l~~~~~~~~ 162 (392)
T Consensus 75 ~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-iLil~NK~Dl~~~~~-~~ei~~~l~l~~~~----~~~ 148 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AAEITEKLGLHSIR----DRN 148 (175)
T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEEECCCCCCCCC-HHHHHHHHCHHHHC----CCC
T ss_conf 775577618999986687789999999999996315316986-999984566767889-99999996866540----797
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780150|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
T Consensus 149 ~~i~~~SA~tG~ 160 (175)
T smart00177 149 WYIQPTCATSGD 160 (175)
T ss_pred EEEEEEECCCCC
T ss_conf 599982687896