RPSBLAST alignment for GI: 254780150 and conserved domain: TIGR00491

>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 15  LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDS---APE------EKLRGITIATAHVS 65
           +S +GHVDHGKTTL   I    +  K+E G I     A E      E + G  +    + 
Sbjct: 7   VSVLGHVDHGKTTLLDKIRGS-AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIR 65

Query: 66  YETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
            +     +  ID PGH  +      G   AD AIL+    +G KPQT+E + + R    +
Sbjct: 66  LKIPGLLF--IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK-T 122

Query: 126 SIVVYMNKVD 135
             VV  NK+D
Sbjct: 123 PFVVAANKID 132