RPSBLAST alignment for GI: 254780150 and conserved domain: TIGR00491
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
Score = 50.6 bits (121), Expect = 8e-07
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDS---APE------EKLRGITIATAHVS 65
+S +GHVDHGKTTL I + K+E G I A E E + G + +
Sbjct: 7 VSVLGHVDHGKTTLLDKIRGS-AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIR 65
Query: 66 YETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
+ + ID PGH + G AD AIL+ +G KPQT+E + + R +
Sbjct: 66 LKIPGLLF--IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK-T 122
Query: 126 SIVVYMNKVD 135
VV NK+D
Sbjct: 123 PFVVAANKID 132