BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780150|ref|YP_003064563.1| translation elongation factor
Tu [Candidatus Liberibacter asiaticus str. psy62]
(392 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60
MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA
Sbjct: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60
Query: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120
TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR
Sbjct: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120
Query: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180
QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE
Sbjct: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180
Query: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV
Sbjct: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
Query: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300
EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY
Sbjct: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300
Query: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360
SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE
Sbjct: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360
Query: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE
Sbjct: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60
MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA
Sbjct: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60
Query: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120
TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR
Sbjct: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120
Query: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180
QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE
Sbjct: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180
Query: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV
Sbjct: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
Query: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300
EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY
Sbjct: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300
Query: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360
SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE
Sbjct: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360
Query: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE
Sbjct: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 624
Score = 84.7 bits (208), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 37/284 (13%)
Query: 15 LSTIGHVDHGKTTLTAAITK----YYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK 70
++ I HVDHGKTTL + K + ++ +D EK RGITI S +
Sbjct: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
Query: 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVY 130
+ +D PGHAD+ + + +++ A +GP PQT+ + A +IG+ IVV
Sbjct: 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV- 140
Query: 131 MNKVDAVD--DDELLDISEYEIRDLLKEHKYSD---DTPIIRGSALCALQGTNKELGEDS 185
+NKVD D DE+++ E+ DL +D D PI+ GS + + D
Sbjct: 141 VNKVDRSDARADEVIN----EVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQ 196
Query: 186 -IHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGR--------GTVVTGCIKRGRIKA 236
+ L+ + H+P P S EG + G G +VTG I G IK+
Sbjct: 197 GMVPLLNLIVDHVPPPVIS---------EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKS 247
Query: 237 GSDVEIIGMGGKKLKV-KCTDVEMF----RKKLDEAIAGDNVGL 275
+++ + G ++V + + + F R+ +DEA AGD V +
Sbjct: 248 NQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI 291
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKRF 72
++ +GHVDHGKT+L AI K D A E + GIT I V+Y+ +
Sbjct: 386 VTIMGHVDHGKTSLLDAIRKA-----------DVAKGE-IGGITQHIGAYQVAYQG--KN 431
Query: 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMN 132
+ +D PGHA + + GA D A+LV AA++ PQ E I A+ + SI+V +N
Sbjct: 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV-SIIVAIN 490
Query: 133 KVDAVDDD 140
K+D + D
Sbjct: 491 KIDKLGAD 498
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 54.3 bits (129), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57
R + ++S + H+D GKTT T I YY+ + + G++ D +E+ RGI
Sbjct: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61
Query: 58 TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112
TI +A + + ++ + ID PGH D+ + DGAI + + G +PQT
Sbjct: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
Query: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140
+ RQ S+ V++ NK+D + D
Sbjct: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 53.9 bits (128), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 14 GLSTIGHVDHGKTTLTAAITKY---YSEEKKEYGDIDSAPEEKLRGITI--ATAHVSY-E 67
S + H+DHGK+TL ++ +E + +D+ E+ RGITI T ++Y
Sbjct: 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS 72
Query: 68 TDKRFY--SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
TD + Y + ID PGH D+ + + +G++LV A G + QT ++ A
Sbjct: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNH 131
Query: 126 SIVVYMNKVD 135
I+ +NK D
Sbjct: 132 EIITVLNKAD 141
>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 805
Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193
DD+ + +G A+C ++G + + + +KAV
Sbjct: 209 DDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAV 241
>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 174 LQGTNKELGEDSIHALMKAVDTHIP 198
L N+++ S H L KAVD +IP
Sbjct: 139 LSRRNRKIARKSQHVLGKAVDFYIP 163
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 308 YILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQA 348
YI+ ++G ++ +DN F+ + A G I+ + G QA
Sbjct: 286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193
+DA E + I+ ++I DL K++ I S L QG +L + A +K++
Sbjct: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215
Query: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220
++ IPT ++S F M++ + G
Sbjct: 216 ESDIPTLEKS----FRMNVHNISTLLG 238
>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter asiaticus str. psy62]
Length = 309
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 67 ETDKRFYSHIDCPGHADYVKNMITGATQADG 97
+ D++F H D +KN + G T DG
Sbjct: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249
PTP + P ++ CGI GT T +++GR + +I ++
Sbjct: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
Query: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300
L + D E + K + +A G+ N+ + RG ++C PG I ++
Sbjct: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136
>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 494
Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 324 NYRPQFFMDTADVTGRIILSPGS 346
+Y P +D A +TG +++S G+
Sbjct: 359 HYNPHLMIDLATLTGAMVVSLGN 381
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 23.1 bits (48), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 78 CPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137
C G D K I G D A + +D P+ + E I GI + N+++A+
Sbjct: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,258
Number of Sequences: 1233
Number of extensions: 10574
Number of successful extensions: 40
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 17
length of query: 392
length of database: 328,796
effective HSP length: 76
effective length of query: 316
effective length of database: 235,088
effective search space: 74287808
effective search space used: 74287808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)