BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] (392 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/392 (100%), Positives = 392/392 (100%) Query: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA Sbjct: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 Query: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR Sbjct: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120 Query: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE Sbjct: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180 Query: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV Sbjct: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240 Query: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY Sbjct: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300 Query: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE Sbjct: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360 Query: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE Sbjct: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/392 (100%), Positives = 392/392 (100%) Query: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA Sbjct: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 Query: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR Sbjct: 61 TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120 Query: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE Sbjct: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKE 180 Query: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV Sbjct: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240 Query: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY Sbjct: 241 EIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEY 300 Query: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE Sbjct: 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVE 360 Query: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE Sbjct: 361 LIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 84.7 bits (208), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 37/284 (13%) Query: 15 LSTIGHVDHGKTTLTAAITK----YYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK 70 ++ I HVDHGKTTL + K + ++ +D EK RGITI S + Sbjct: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81 Query: 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVY 130 + +D PGHAD+ + + +++ A +GP PQT+ + A +IG+ IVV Sbjct: 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV- 140 Query: 131 MNKVDAVD--DDELLDISEYEIRDLLKEHKYSD---DTPIIRGSALCALQGTNKELGEDS 185 +NKVD D DE+++ E+ DL +D D PI+ GS + + D Sbjct: 141 VNKVDRSDARADEVIN----EVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQ 196 Query: 186 -IHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGR--------GTVVTGCIKRGRIKA 236 + L+ + H+P P S EG + G G +VTG I G IK+ Sbjct: 197 GMVPLLNLIVDHVPPPVIS---------EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKS 247 Query: 237 GSDVEIIGMGGKKLKV-KCTDVEMF----RKKLDEAIAGDNVGL 275 +++ + G ++V + + + F R+ +DEA AGD V + Sbjct: 248 NQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI 291 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKRF 72 ++ +GHVDHGKT+L AI K D A E + GIT I V+Y+ + Sbjct: 386 VTIMGHVDHGKTSLLDAIRKA-----------DVAKGE-IGGITQHIGAYQVAYQG--KN 431 Query: 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMN 132 + +D PGHA + + GA D A+LV AA++ PQ E I A+ + SI+V +N Sbjct: 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV-SIIVAIN 490 Query: 133 KVDAVDDD 140 K+D + D Sbjct: 491 KIDKLGAD 498 >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 54.3 bits (129), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%) Query: 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57 R + ++S + H+D GKTT T I YY+ + + G++ D +E+ RGI Sbjct: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61 Query: 58 TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112 TI +A + + ++ + ID PGH D+ + DGAI + + G +PQT Sbjct: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 Query: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140 + RQ S+ V++ NK+D + D Sbjct: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 53.9 bits (128), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 14 GLSTIGHVDHGKTTLTAAITKY---YSEEKKEYGDIDSAPEEKLRGITI--ATAHVSY-E 67 S + H+DHGK+TL ++ +E + +D+ E+ RGITI T ++Y Sbjct: 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS 72 Query: 68 TDKRFY--SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125 TD + Y + ID PGH D+ + + +G++LV A G + QT ++ A Sbjct: 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNH 131 Query: 126 SIVVYMNKVD 135 I+ +NK D Sbjct: 132 EIITVLNKAD 141 >gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 DD+ + +G A+C ++G + + + +KAV Sbjct: 209 DDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAV 241 >gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 174 LQGTNKELGEDSIHALMKAVDTHIP 198 L N+++ S H L KAVD +IP Sbjct: 139 LSRRNRKIARKSQHVLGKAVDFYIP 163 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 308 YILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQA 348 YI+ ++G ++ +DN F+ + A G I+ + G QA Sbjct: 286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%) Query: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 +DA E + I+ ++I DL K++ I S L QG +L + A +K++ Sbjct: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215 Query: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220 ++ IPT ++S F M++ + G Sbjct: 216 ESDIPTLEKS----FRMNVHNISTLLG 238 >gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport system [Candidatus Liberibacter asiaticus str. psy62] Length = 309 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 67 ETDKRFYSHIDCPGHADYVKNMITGATQADG 97 + D++F H D +KN + G T DG Sbjct: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 23.9 bits (50), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249 PTP + P ++ CGI GT T +++GR + +I ++ Sbjct: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 Query: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300 L + D E + K + +A G+ N+ + RG ++C PG I ++ Sbjct: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136 >gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 494 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 15/23 (65%) Query: 324 NYRPQFFMDTADVTGRIILSPGS 346 +Y P +D A +TG +++S G+ Sbjct: 359 HYNPHLMIDLATLTGAMVVSLGN 381 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 23.1 bits (48), Expect = 8.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 78 CPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 C G D K I G D A + +D P+ + E I GI + N+++A+ Sbjct: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.137 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,258 Number of Sequences: 1233 Number of extensions: 10574 Number of successful extensions: 40 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 17 length of query: 392 length of database: 328,796 effective HSP length: 76 effective length of query: 316 effective length of database: 235,088 effective search space: 74287808 effective search space used: 74287808 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)