HHsearch alignment for GI: 254780151 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=882.98 Aligned_cols=350 Identities=44% Similarity=0.767 Sum_probs=328.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHH
Q ss_conf 63388999960985799999999886984999998704787665555778818999999999998099589817078866
Q gi|254780151|r 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97 (408)
Q Consensus 18 ~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~ 97 (408)
T Consensus 1 ~~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~----~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~ 76 (356)
T COG0482 1 MKKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDE----DGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFW 76 (356)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 9876799990577789999999997697499999996414----788867725678999999998099559984689988
Q ss_pred HHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEE
Q ss_conf 32244112678708861200001541105888887401687645225311025412678773168853157878731898
Q gi|254780151|r 98 NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 (408)
Q Consensus 98 ~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL 177 (408)
T Consensus 77 ~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~-----~~~l~r~~D~~KDQsYfL 151 (356)
T COG0482 77 NKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEG-----IELLLRGVDLNKDQSYFL 151 (356)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC-----CCCCCCCCCCCCCHHHEE
T ss_conf 888887789985799999651048788999999999975998578744676543776-----000146787420300020
Q ss_pred EEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEEEC
Q ss_conf 63020221003342568997898999974125435511102301112775103455307664346711037743223357
Q gi|254780151|r 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 (408)
Q Consensus 178 ~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~G~viG~H~ 257 (408)
T Consensus 152 ~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi~~~~~~~fl~~~~p~--~~G~ii~~~G~v~g~H~ 229 (356)
T COG0482 152 YALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFIGERKFKDFLGRYLPA--KPGEIIDKDGKVLGEHD 229 (356)
T ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCC--CCCEEEECCCCEEEECC
T ss_conf 1268877753225677777789999999759976676667762213787789998731877--88527924881800128
Q ss_pred CCEEEEECCCCCCCCCC--CCCCEEEECCCCCCEEEEECCCCCCCCCEEECCCEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 83153102334335657--7861376317553125652355542221120022303776555445687189999801788
Q gi|254780151|r 258 GIINYTIGQRRGLGVAM--GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335 (408)
Q Consensus 258 G~~~yTIGQRkGL~i~~--~eP~YVv~id~~~N~ViVg~~~~L~~~~i~l~d~nWi~~~~~~~~~~~~~~~~vkiR~~~~ 335 (408)
T Consensus 230 G~~~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~~l~~~~l~~~~~~~~~~----~~~~~~~~~~~k~R~~~~ 305 (356)
T COG0482 230 GLMYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNWLDD----APPEEPLECTAKVRYRQG 305 (356)
T ss_pred CEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHEEEEEEEECCCCCCC----CCCCCCCEEEEEEECCCC
T ss_conf 7788842663356768888887799987166675999640441122566111532366----667888169999822689
Q ss_pred CCEEEEEEECC---EEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 70089998299---7999975972000696389997388866588876897145
Q gi|254780151|r 336 PVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 (408)
Q Consensus 336 pvp~~i~~~~~---~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t 386 (408)
T Consensus 306 ~~~~~~~~~~~~~~~~~v~f~~~~~avtpGQ~~v~Y~~d----~~lGgg~I~~~ 355 (356)
T COG0482 306 DEPCKVKVLSDEDVELAVKFDEPQRAVTPGQAAVLYDGD----ICLGGGIIDTS 355 (356)
T ss_pred CCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCC----EEEEEEEEECC
T ss_conf 874368972477615899955852112699589996599----99700786315