HHsearch alignment for GI: 254780151 and conserved domain: COG1636

Probab=96.43  E-value=0.028  Score=36.85  Aligned_cols=110  Identities=17%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHH-HH-H
Q ss_conf             338899996098579999999988698499999870478766555577881899999999999809958981707-88-6
Q gi|254780151|r   19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYE-ER-F   96 (408)
Q Consensus        19 k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~-~~-f   96 (408)
T Consensus         2 ~~~kiLlH~CCAPcs~y~le~l~~~~~~i~~yFY---NPNIhP~~E----Y~~R~~e~~~f~~~~~i~~iegdY~~~~~w   74 (204)
T COG1636           2 GRPKLLLHSCCAPCSGYVLEKLRDSGIKITIYFY---NPNIHPLSE----YELRKEEVKRFAEKFGINFIEGDYEDLEKW   74 (204)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE---CCCCCCHHH----HHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9870789862577718999999965866699974---899892699----999999999999982970553575558999


Q ss_pred             HHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHH----HHCCCCCCEECCC
Q ss_conf             63224411267870886120000154110588888----7401687645225
Q gi|254780151|r   97 RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTRQLGADVLATG  144 (408)
Q Consensus        97 ~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~----~a~~~g~~~iATG  144 (408)
T Consensus        75 ~~~-vKg~E~EpE~G~---RC~~C-----fd~Rle~tA~~A~e~G~d~fttt  117 (204)
T COG1636          75 FER-VKGMEDEPEGGK---RCTMC-----FDMRLEKTAKKAKELGFDVFTTT  117 (204)
T ss_pred             HHH-HHCCHHCCCCCC---HHHHH-----HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999-616200777784---23778-----99989999999998296210121