HHsearch alignment for GI: 254780151 and conserved domain: COG2117

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=98.59  E-value=1.2e-07  Score=75.13  Aligned_cols=171  Identities=23%  Similarity=0.293  Sum_probs=104.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHC
Q ss_conf             88999960985799999999886984999998704787665555778818999999999998099589817078866322
Q gi|254780151|r   21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV  100 (408)
Q Consensus        21 ~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~V  100 (408)
T Consensus         1 m~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~-------------d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A   67 (198)
T COG2117           1 MDVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVL-------------DSWKYARETAAILGFPHEVLQLDREILEDA   67 (198)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-------------CCHHHHHHHHHHHCCCCCEECCCHHHHHHH
T ss_conf             9568984489710589999987178717999873346-------------640668999998299700001688999999


Q ss_pred             CCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf             44112678708861200001541105888887401687645225311025412678773168853157878731898630
Q gi|254780151|r  101 IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT  180 (408)
Q Consensus       101 ~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~l  180 (408)
T Consensus        68 ~em~ie----dg~P~~aIq---~iH-~~alE~~A~r~~~~iaDGT----RR---DD--rvP~ls~----~~~qSL-----  121 (198)
T COG2117          68 VEMIIE----DGYPRNAIQ---YIH-EMALEALASREVDRIADGT----RR---DD--RVPKLSR----SEAQSL-----  121 (198)
T ss_pred             HHHHHH----CCCCCHHHH---HHH-HHHHHHHHHHHHHHHCCCC----CC---CC--CCCCCCH----HHHHHH-----
T ss_conf             999985----389850889---999-9999999877788875787----44---56--6764249----887518-----


Q ss_pred             CCHHHC-EEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCC
Q ss_conf             202210-03342568997898999974125435511102301112775103455307
Q gi|254780151|r  181 TQQQLC-DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN  236 (408)
Q Consensus       181 ~~~~L~-~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~  236 (408)
T Consensus       122 -EdR~nv~Yi~PL~G~G~kti~~Lv~~~f-~~e~~~-Se---~~~k~DYEaElR~lL  172 (198)
T COG2117         122 -EDRLNVQYIRPLLGLGYKTIRRLVSAIF-ILEEGP-SE---KIEKADYEAELRYLL  172 (198)
T ss_pred             -HHHCCCEEECCCCCCCHHHHHHHHHHHE-EEECCC-CC---CCCCCCHHHHHHHHH
T ss_conf             -8751864553033446789999988773-410166-55---555532699999999