HHsearch alignment for GI: 254780151 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=977.68 Aligned_cols=352 Identities=45% Similarity=0.786 Sum_probs=332.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf 86338899996098579999999988698499999870478766555577881899999999999809958981707886
Q gi|254780151|r 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96 (408)
Q Consensus 17 ~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f 96 (408)
T Consensus 1 ~~sk~rV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~---~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~~f 77 (355)
T PRK00143 1 DPSKKRVVVGMSGGVDSSVAAALLKEQGYDVIGLFMKLWDDDD---GSGGCCAEEDIADARAVADKLGIPLYVVDFAKEF 77 (355)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9988889999167899999999999779958999998876887---7789985788999999999869857996869987
Q ss_pred HHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEE
Q ss_conf 63224411267870886120000154110588888740168764522531102541267877316885315787873189
Q gi|254780151|r 97 RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176 (408)
Q Consensus 97 ~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYf 176 (408)
T Consensus 78 ~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKFg~l~~~A~~lgad~iATGHYAri~~~-----~~~~~L~r~~D~~KDQSYf 152 (355)
T PRK00143 78 WDNVFDYFLDEYKAGRTPNPCVLCNKEIKFKAFLDYALELGADYIATGHYARIRDE-----DGRYELLRAVDPNKDQSYF 152 (355)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCEECCCCEEEEEEC-----CCEEEEEECCCCCCCCEEE
T ss_conf 67889999999976999997334087233999999998739984233525999915-----9818998678898872057
Q ss_pred EEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEEE
Q ss_conf 86302022100334256899789899997412543551110230111277510345530766434671103774322335
Q gi|254780151|r 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 (408)
Q Consensus 177 L~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~G~viG~H 256 (408)
T Consensus 153 L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL~~a~K~dSq~ICFi~~~~y~~Fl~~~~~--~~pG~ivd~~G~vlG~H 230 (355)
T PRK00143 153 LYQLTQEQLAKLLFPLGELTKPEVREIAAEIGLPTAKKKDSTGICFIGERNFKDFLSRYLP--AQPGEIVDLDGKVLGEH 230 (355)
T ss_pred EECCCHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHCC--CCCCCEECCCCCEEEEE
T ss_conf 6105798874207587677358999999975898899777786044048877899986357--88886885589587678
Q ss_pred CCCEEEEECCCCCCCCC-CCCCCEEEECCCCCCEEEEECCCCCCCCCEEECCCEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 78315310233433565-77861376317553125652355542221120022303776555445687189999801788
Q gi|254780151|r 257 NGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335 (408)
Q Consensus 257 ~G~~~yTIGQRkGL~i~-~~eP~YVv~id~~~N~ViVg~~~~L~~~~i~l~d~nWi~~~~~~~~~~~~~~~~vkiR~~~~ 335 (408)
T Consensus 231 ~G~~~yTIGQRkGLgi~~~~~p~yV~~id~~~N~v~Vg~~~~L~~~~~~~~~~nwi~~~~----~~~~~~~~vkiRy~~~ 306 (355)
T PRK00143 231 DGLMYYTIGQRKGLGIGGSGEPWYVVGKDLKNNIVYVGDHEALYSRELIASDLNWVSGEP----PEEPFECTAKVRYRQP 306 (355)
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHCCCEEEEEEEEECCCCC----CCCCEEEEEEECCCCC
T ss_conf 695568704414567688998689999837889999978288435859997237778989----9998599999856997
Q ss_pred CCEEEEEE-ECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 70089998-2997999975972000696389997388866588876897145
Q gi|254780151|r 336 PVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 (408)
Q Consensus 336 pvp~~i~~-~~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t 386 (408)
T Consensus 307 ~~~~~v~~~~~~~~~v~f~~p~~avaPGQ~~VfY~~d----~vLGGG~I~~~ 354 (355)
T PRK00143 307 DVPCTVTPLDDGRVKVIFDEPQRAVTPGQAAVFYDGD----VCLGGGIIERA 354 (355)
T ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEEEEE
T ss_conf 8287999925997999949997678998389999799----99986999860