HHsearch alignment for GI: 254780151 and conserved domain: TIGR00364

>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=99.18  E-value=3.8e-11  Score=100.33  Aligned_cols=164  Identities=25%  Similarity=0.372  Sum_probs=103.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHC
Q ss_conf             999609857999999998869--84999998704787665555778818999999999998099589-817078866322
Q gi|254780151|r   24 VVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY-VFDYEERFRNAV  100 (408)
Q Consensus        24 ~va~SGGVDSsvaa~lL~~~G--~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~-~~d~~~~f~~~V  100 (408)
T Consensus         2 v~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~-Y---------GQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl~~l~~--l   69 (227)
T TIGR00364         2 VVVLSGGQDSTTVLLIALDEGGKYEVHAITFD-Y---------GQRAHSRELESARKIAEALGIRHHFVIDLSLLKQ--L   69 (227)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEEEECCC-C---------HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH--H
T ss_conf             68743734689999999961795079985465-0---------1378999999999999980897078617799985--5


Q ss_pred             CC--CCHHHHH--CCCCCCCE-ECC----------CCEEEHHHH-HHHHCCCCCCEECCCCCCCEEEEC--CCCCCCEEE
Q ss_conf             44--1126787--08861200-001----------541105888-887401687645225311025412--678773168
Q gi|254780151|r  101 IV--PFASSYA--AGETPLPC-VDC----------NRTVKFSDL-LSVTRQLGADVLATGHYIRSRLYV--GDDGKRRRI  162 (408)
Q Consensus       101 ~~--~~~~~y~--~G~TPNPc-~~C----------N~~iKF~~l-~~~a~~~g~~~iATGHYar~~~~~--~~~~~~~~~  162 (408)
T Consensus        70 ~~YsaLt~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~----~~~DfSgYPD-Cr~E  144 (227)
T TIGR00364        70 GKYSALTDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGV----CETDFSGYPD-CRDE  144 (227)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCC----CCCCCCCCCC-CCHH
T ss_conf             4045235787567666653202356531133337804799999999988861842522001----0003657988-8688


Q ss_pred             EEECCCCCCCCEEEEE-EECCHHHC--EEECCCCCCCHHHHHHHHHHCC
Q ss_conf             8531578787318986-30202210--0334256899789899997412
Q gi|254780151|r  163 MCRPMDLERDQSYFLF-ATTQQQLC--DLRFPLGDMKKESVRDLAREMG  208 (408)
Q Consensus       163 L~r~~D~~KDQSYfL~-~l~~~~L~--~~~FPlg~~~K~eVR~~A~~~g  208 (408)
T Consensus       145 Fvka~----n~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elG  189 (227)
T TIGR00364       145 FVKAL----NHALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELG  189 (227)
T ss_pred             HHHHH----HHHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHC
T ss_conf             99999----9999974126881120246666701269899999988735