HHsearch alignment for GI: 254780151 and conserved domain: TIGR00364
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=99.18 E-value=3.8e-11 Score=100.33 Aligned_cols=164 Identities=25% Similarity=0.372 Sum_probs=103.6
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHC
Q ss_conf 999609857999999998869--84999998704787665555778818999999999998099589-817078866322
Q gi|254780151|r 24 VVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY-VFDYEERFRNAV 100 (408)
Q Consensus 24 ~va~SGGVDSsvaa~lL~~~G--~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~-~~d~~~~f~~~V 100 (408)
T Consensus 2 v~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~-Y---------GQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl~~l~~--l 69 (227)
T TIGR00364 2 VVVLSGGQDSTTVLLIALDEGGKYEVHAITFD-Y---------GQRAHSRELESARKIAEALGIRHHFVIDLSLLKQ--L 69 (227)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEEEECCC-C---------HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH--H
T ss_conf 68743734689999999961795079985465-0---------1378999999999999980897078617799985--5
Q ss_pred CC--CCHHHHH--CCCCCCCE-ECC----------CCEEEHHHH-HHHHCCCCCCEECCCCCCCEEEEC--CCCCCCEEE
Q ss_conf 44--1126787--08861200-001----------541105888-887401687645225311025412--678773168
Q gi|254780151|r 101 IV--PFASSYA--AGETPLPC-VDC----------NRTVKFSDL-LSVTRQLGADVLATGHYIRSRLYV--GDDGKRRRI 162 (408)
Q Consensus 101 ~~--~~~~~y~--~G~TPNPc-~~C----------N~~iKF~~l-~~~a~~~g~~~iATGHYar~~~~~--~~~~~~~~~ 162 (408)
T Consensus 70 ~~YsaLt~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~----~~~DfSgYPD-Cr~E 144 (227)
T TIGR00364 70 GKYSALTDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGV----CETDFSGYPD-CRDE 144 (227)
T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCC----CCCCCCCCCC-CCHH
T ss_conf 4045235787567666653202356531133337804799999999988861842522001----0003657988-8688
Q ss_pred EEECCCCCCCCEEEEE-EECCHHHC--EEECCCCCCCHHHHHHHHHHCC
Q ss_conf 8531578787318986-30202210--0334256899789899997412
Q gi|254780151|r 163 MCRPMDLERDQSYFLF-ATTQQQLC--DLRFPLGDMKKESVRDLAREMG 208 (408)
Q Consensus 163 L~r~~D~~KDQSYfL~-~l~~~~L~--~~~FPlg~~~K~eVR~~A~~~g 208 (408)
T Consensus 145 Fvka~----n~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elG 189 (227)
T TIGR00364 145 FVKAL----NHALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELG 189 (227)
T ss_pred HHHHH----HHHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHC
T ss_conf 99999----9999974126881120246666701269899999988735