HHsearch alignment for GI: 254780151 and conserved domain: TIGR00420
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=934.52 Aligned_cols=355 Identities=38% Similarity=0.705 Sum_probs=328.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---------CCCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 8899996098579999999988698499999870478766555---------5778818999999999998099589817
Q gi|254780151|r 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---------KGSCCAGQDVYDARRVCDTINVSHYVFD 91 (408)
Q Consensus 21 ~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~---------~~~c~~~~d~~~a~~va~~LgI~~~~~d 91 (408)
T Consensus 1 ~kv~VglSGGVDSSVsA~lL~~qg~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LGi~l~~~n 80 (394)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLGIPLEKVN 80 (394)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 94899806854789999999714965899987765124666644316562467788368879999999985598189855
Q ss_pred HHHHHHHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCC-C--CCCEECCCCCCCEE-EECCCCCCCEEEEEECC
Q ss_conf 07886632244112678708861200001541105888887401-6--87645225311025-41267877316885315
Q gi|254780151|r 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L--GADVLATGHYIRSR-LYVGDDGKRRRIMCRPM 167 (408)
Q Consensus 92 ~~~~f~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~-~--g~~~iATGHYar~~-~~~~~~~~~~~~L~r~~ 167 (408)
T Consensus 81 f~~~Y~~~Vf~~~i~~y~~G~TPnPDi~CN~~iKFG~~~e~~~~~~Gtg~~~~aTGHYAr~~q~~---~~~~~~~L~~~~ 157 (394)
T TIGR00420 81 FQKEYWNKVFEPFIQEYKEGLTPNPDILCNKLIKFGLLLEYAKQLLGTGNDKIATGHYARIAQEI---ENKSLFELLRAL 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHH---CCCCHHHHHCCC
T ss_conf 07887888889999987367777862004712003789999998528995434424476544342---131014443046
Q ss_pred CCCCCCEEEEEEECCHHHCEEECCCCCCCHHHHHHHHHHCC--CCCCC-HHHCCCEEECCCC----CCHHHHHHCCCCCC
Q ss_conf 78787318986302022100334256899789899997412--54355-1110230111277----51034553076643
Q gi|254780151|r 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG--LDIAD-KSDSQDICFVQQG----KYFDVVKRINAGIA 240 (408)
Q Consensus 168 D~~KDQSYfL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~g--l~~a~-K~eSqgICFi~~~----~~~~Fl~~~~~~~~ 240 (408)
T Consensus 158 D~~KDQSYFL~~l~~~~~~~~~FPlG~L~K~~vR~iA~~~~PfL~ta~tkKDSqgICFig~~qhGGkf~dFLk~Ylp--~ 235 (394)
T TIGR00420 158 DKNKDQSYFLYHLSQEQLAKLLFPLGELLKPEVRQIAKNAGPFLSTAETKKDSQGICFIGERQHGGKFKDFLKKYLP--V 235 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCC--C
T ss_conf 78886117376401898887505301036778999998648632344568864450210351568846888764257--6
Q ss_pred -CCCCEECCCCC-----EEEEECCCEEEEECCCCCCCCC-----CCCCCEEEECCCCCCEEEEEC---CCCCCCCCEEEC
Q ss_conf -46711037743-----2233578315310233433565-----778613763175531256523---555422211200
Q gi|254780151|r 241 -LEGDIVHLNGQ-----ILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 (408)
Q Consensus 241 -~~G~ivd~~G~-----viG~H~G~~~yTIGQRkGL~i~-----~~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~ 306 (408)
T Consensus 236 ek~G~I~~~~~~~Gakt~iG~H~G~w~yTiGQR~Gl~~~~~~~g~~~~~FVv~kD~~~N~l~v~~g~d~~~l~~~~~~~~ 315 (394)
T TIGR00420 236 EKPGNIIDVDTEKGAKTVIGEHDGLWFYTIGQRKGLGLGGAKEGAAEPWFVVEKDLETNELVVSQGEDKEDLASRGLLVQ 315 (394)
T ss_pred CCCCEEEECCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHCCCEEEE
T ss_conf 77820475488975403632246678982014414776356843357632354203148799971888188613744787
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEEECCCCCC---EEEEE-EECCE-EEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 2230377655544568718999980178870---08999-82997-9999759720006963899973888665888768
Q gi|254780151|r 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPV---PVFVQ-RNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 (408)
Q Consensus 307 d~nWi~~~~~~~~~~~~~~~~vkiR~~~~pv---p~~i~-~~~~~-~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGG 381 (408)
T Consensus 316 ~~~w~~~~edtp~~~~~~~~~vk~Ry~q~~~qik~~~~~~~~Dn~di~v~f~~P~~~vtpGQ~~vlY~~d---~~~LGgG 392 (394)
T TIGR00420 316 QLNWLDDEEDTPKPFENIRCTVKIRYRQKPVQIKSCKLKLLKDNLDIEVIFDEPQQGVTPGQSAVLYKDD---QICLGGG 392 (394)
T ss_pred EECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCEECCCEEEEEECCC---CEEECCC
T ss_conf 4045674446766677737999983257750243467785058841799843885202586269998578---2781555
Q ss_pred EE
Q ss_conf 97
Q gi|254780151|r 382 II 383 (408)
Q Consensus 382 iI 383 (408)
T Consensus 393 ~I 394 (394)
T TIGR00420 393 II 394 (394)
T ss_pred CC
T ss_conf 69