HHsearch alignment for GI: 254780151 and conserved domain: cd01995
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.97 E-value=3.5e-09 Score=86.20 Aligned_cols=139 Identities=23% Similarity=0.350 Sum_probs=87.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCC
Q ss_conf 89999609857999999998869849999987047876655557788189999999999980995898170788663224
Q gi|254780151|r 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101 (408)
Q Consensus 22 kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~V~ 101 (408)
T Consensus 1 kavvllSGGlDSt~~l~~~~~~g~~v~~l~~dYG-Q----------r~~~E~~~a~~i~~~l~-~~~------------~ 56 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYG-Q----------RHAKEEEAAKLIAEKLG-PST------------Y 56 (169)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECC-C----------CHHHHHHHHHHHHHHHC-CCC------------E
T ss_conf 9899907878899999999984996999997569-8----------54999999999999968-994------------6
Q ss_pred CCCHHHHHCCCCCCCEECCCCEEEH-HHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 4112678708861200001541105-888887401687645225311025412678773168853157878731898630
Q gi|254780151|r 102 VPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 (408)
Q Consensus 102 ~~~~~~y~~G~TPNPc~~CN~~iKF-~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~l 180 (408)
T Consensus 57 VP~-----------------RN~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc---~~~F~~a~~~~-------~~~ 109 (169)
T cd01995 57 VPA-----------------RNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDC---RPEFIEAMNKA-------LNL 109 (169)
T ss_pred ECC-----------------CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC---CHHHHHHHHHH-------HHH
T ss_conf 528-----------------389999999999998299968999824775689998---69999999999-------983
Q ss_pred CCHHHCEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 2022100334256899789899997412543
Q gi|254780151|r 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211 (408)
Q Consensus 181 ~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~ 211 (408)
T Consensus 110 ~~~~~v~i~aP~~~~~K~eiv~~g~~lgv~~ 140 (169)
T cd01995 110 GTENGIKIHAPLIDLSKAEIVRLGGELGVPL 140 (169)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCH
T ss_conf 0879858984333598999999998849979