HHsearch alignment for GI: 254780151 and conserved domain: cd01998
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=100.00 E-value=0 Score=957.14 Aligned_cols=345 Identities=47% Similarity=0.822 Sum_probs=326.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCC
Q ss_conf 89999609857999999998869849999987047876655557788189999999999980995898170788663224
Q gi|254780151|r 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101 (408)
Q Consensus 22 kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~~~V~ 101 (408)
T Consensus 1 kV~v~mSGGVDSsvaA~LL~~~G~~V~gv~m~~w~~~~---~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~ef~~~V~ 77 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDD---GKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVF 77 (349)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
T ss_conf 98999077899999999998779957999999678876---678988677899999999986996799680998868889
Q ss_pred CCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 41126787088612000015411058888874016876452253110254126787731688531578787318986302
Q gi|254780151|r 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 (408)
Q Consensus 102 ~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYfL~~l~ 181 (408)
T Consensus 78 ~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~A~~~g~d~iATGHYAri~~~~----~~~~~L~r~~D~~KDQSYfL~~l~ 153 (349)
T cd01998 78 EPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDN----NGRYRLLRGVDPNKDQSYFLSQLS 153 (349)
T ss_pred HHHHHHHHCCCCCCCCHHCCCEEEHHHHHHHHHHCCCCEECCCCEEEEEECC----CCCEEEEECCCCCCCCCEEEECCC
T ss_conf 9999999748999876211873519999999987599864135147889758----984899876899878205640124
Q ss_pred CHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEEECCCEE
Q ss_conf 02210033425689978989999741254355111023011127751034553076643467110377432233578315
Q gi|254780151|r 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 (408)
Q Consensus 182 ~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~G~viG~H~G~~~ 261 (408)
T Consensus 154 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi~~~~~~~FL~~~~~--~~~G~ivd~~G~vlG~H~G~~~ 231 (349)
T cd01998 154 QEQLSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFIGERNFRDFLKEYLP--EKPGEIVDIDGKVLGEHKGLWF 231 (349)
T ss_pred HHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHCC--CCCCCEECCCCCEEEEECCEEE
T ss_conf 87661038788786538999999985999899777776033138877899986456--8988688557968888889999
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCCCEEEEEC---CCCCCCCCEEECCCEECCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 310233433565778613763175531256523---55542221120022303776555445687189999801788700
Q gi|254780151|r 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338 (408)
Q Consensus 262 yTIGQRkGL~i~~~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~d~nWi~~~~~~~~~~~~~~~~vkiR~~~~pvp 338 (408)
T Consensus 232 yTIGQRkGLgi~~~~p~yV~~~d~~~N~v~Vg~~~~~~~L~~~~~~~~~~nwi~~~~----~~~~~~~~vkiRy~~~~~~ 307 (349)
T cd01998 232 YTIGQRKGLGIASGEPWYVVEKDPETNIVVVGPGSDHEALYSDGLIAKDFNWIGDPP----PLEPLECEVKIRYRQPPVP 307 (349)
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCHHHCCCEEEEEEEEECCCCC----CCCCEEEEEEECCCCCCCC
T ss_conf 981330567788897179999817889899966987501224679997137778988----8998599999877995807
Q ss_pred EEEEEE-CCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEE
Q ss_conf 899982-997999975972000696389997388866588876897
Q gi|254780151|r 339 VFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 (408)
Q Consensus 339 ~~i~~~-~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI 383 (408)
T Consensus 308 ~~v~~~~~~~~~V~f~~p~~avaPGQ~~V~Y~~d----~vLGGG~I 349 (349)
T cd01998 308 CTIEPLDDGRLEVIFDEPQRAVAPGQAAVFYDGD----RVLGGGII 349 (349)
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEC
T ss_conf 7999935987999949998677987489999799----99988889