HHsearch alignment for GI: 254780151 and conserved domain: cd01999
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.23 E-value=7.7e-11 Score=98.09 Aligned_cols=164 Identities=28% Similarity=0.389 Sum_probs=110.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEECCHHHHHHHHC
Q ss_conf 99996098579999999988698-4999998704787665555778818999999999998099-589817078866322
Q gi|254780151|r 23 VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAV 100 (408)
Q Consensus 23 V~va~SGGVDSsvaa~lL~~~G~-~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI-~~~~~d~~~~f~~~V 100 (408)
T Consensus 1 VvLAySGGLDTSv~l~wL~e~~~~eVia~~~d~Gq------------~~e~~~~i~~kA~~~GA~~~~v~D~r~ef~~~~ 68 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQ------------PEEEIEAIEEKALKLGAKKHVVVDLREEFVEDY 68 (385)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCC------------CHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 97997788179999999997459849999998999------------667778999999981997899961299999999
Q ss_pred CCCCHHH--HHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEE-EECCCCCCCCEEEE
Q ss_conf 4411267--87088612000015411058888874016876452253110254126787731688-53157878731898
Q gi|254780151|r 101 IVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM-CRPMDLERDQSYFL 177 (408)
Q Consensus 101 ~~~~~~~--y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L-~r~~D~~KDQSYfL 177 (408)
T Consensus 69 i~pai~ana~Yeg~Y~L~tslaRplI-ak~~ve~A~~~ga~aiaHG~-----TGkGND-QvRFe~~~~aL~P~------- 134 (385)
T cd01999 69 IFPAIQANALYEGTYPLGTALARPLI-AKALVEVAKEEGADAVAHGC-----TGKGND-QVRFELAFYALNPD------- 134 (385)
T ss_pred HHHHHHHCCCCCCCEECCCCHHHHHH-HHHHHHHHHHHCCEEEEECC-----CCCCCC-HHHHHHHHHHHCCC-------
T ss_conf 99999608643375321350157899-99999999980984997456-----668884-06899999985999-------
Q ss_pred EEECCHHHCEEECCCCCC---CHHHHHHHHHHCCCCCC---CHHHCCCE
Q ss_conf 630202210033425689---97898999974125435---51110230
Q gi|254780151|r 178 FATTQQQLCDLRFPLGDM---KKESVRDLAREMGLDIA---DKSDSQDI 220 (408)
Q Consensus 178 ~~l~~~~L~~~~FPlg~~---~K~eVR~~A~~~gl~~a---~K~eSqgI 220 (408)
T Consensus 135 -------l-~iiAP~Rd~~~~sR~~~i~ya~~~gi~v~~~~~~pyS~D~ 175 (385)
T cd01999 135 -------L-KIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPYSIDE 175 (385)
T ss_pred -------C-EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf -------7-5851473144488899999999859998866788851463