HHsearch results for GI: 254780151 and protein with PDBid: 2der_A
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=100.00 E-value=0 Score=915.19 Aligned_cols=354 Identities=34% Similarity=0.643 Sum_probs=327.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf 86338899996098579999999988698499999870478766555577881899999999999809958981707886
Q gi|254780151|r 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96 (408)
Q Consensus 17 ~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f 96 (408)
+.+++||+|||||||||||||+||++|||+|+|+||++|+.++ .+..||+++|++||++||++|||||+++|++++|
T Consensus 14 ~~~~kkV~V~mSGGVDSsvaa~lL~~qG~~V~gv~m~~~~~~~---~~~~c~~~~d~~~a~~va~~LgIp~~~~d~~~~f 90 (380)
T 2der_A 14 SETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD---GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp ---CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCS---HHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 7668879998778699999999999779968999998876887---6678884678999999999849977994508976
Q ss_pred HHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHH-CCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEE
Q ss_conf 6322441126787088612000015411058888874-016876452253110254126787731688531578787318
Q gi|254780151|r 97 RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175 (408)
Q Consensus 97 ~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a-~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSY 175 (408)
|+.|++||+++|++|+|||||+.||++|||++|+++| +++|+||||||||||+... ..++.|.||.|.+|||||
T Consensus 91 ~~~V~~~f~~~y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~-----~~~~~L~r~~D~~KDQSY 165 (380)
T 2der_A 91 WDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADV-----DGKSRLLRGLDSNKDQSY 165 (380)
T ss_dssp HHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEE-----TTEEEEECCSSTTTCCGG
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECC-----CCCEEEEECCCCCCCCEE
T ss_conf 222457779998758999854011333228999999998669985600037999758-----995778852777778446
Q ss_pred EEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEE
Q ss_conf 98630202210033425689978989999741254355111023011127751034553076643467110377432233
Q gi|254780151|r 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 (408)
Q Consensus 176 fL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~~~G~ivd~~G~viG~ 255 (408)
|||+|+|++|++++||||+|+|+|||++|+++||++|+|+||||||||++++|.+||++|++ .+||+|+|.+|++||+
T Consensus 166 fL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi~~~~~~~fl~~~~~--~~~G~ivd~~G~~lG~ 243 (380)
T 2der_A 166 FLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGE 243 (380)
T ss_dssp GGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----------------CHHHHHHTTSC--CCCCEEEETTCCEEEE
T ss_pred EEEEECHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHCC--CCCCCEEECCCCEEEE
T ss_conf 76543576505547689788557899999986997567556667454378988999986287--8898789789989758
Q ss_pred ECCCEEEEECCCCCCCCC-----CCCCCEEEECCCCCCEEEEEC---CCCCCCCCEEECCCEECCCCCCCCCCCCCEEEE
Q ss_conf 578315310233433565-----778613763175531256523---555422211200223037765554456871899
Q gi|254780151|r 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327 (408)
Q Consensus 256 H~G~~~yTIGQRkGL~i~-----~~eP~YVv~id~~~N~ViVg~---~~~L~~~~i~l~d~nWi~~~~~~~~~~~~~~~~ 327 (408)
|+|+|+|||||||||+++ .++||||++||+++|+|+|++ ++.|+++.+.+.++||++..+ ...+++|.
T Consensus 244 H~G~~~yTiGQRkGLgi~~~~~~~~~p~yVv~~d~~~N~V~V~~~~~~~~L~~~~~~~~~~nwi~~~~----~~~~~~~~ 319 (380)
T 2der_A 244 HQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREP----FTGTMRCT 319 (380)
T ss_dssp CSCSTTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEEEEEESTTCTTTCEEEEEEEEEEETTCCC----CCSEEEEE
T ss_pred ECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCC----CCCCEEEE
T ss_conf 77968887567763344677877766339998727764899965877742021058966326547867----79987899
Q ss_pred EEEECCCCCCEEEEEE-ECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 9980178870089998-299799997597200069638999738886658887689714555
Q gi|254780151|r 328 VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 (408)
Q Consensus 328 vkiR~~~~pvp~~i~~-~~~~~~V~f~eP~~aiAPGQ~~VfY~~D~~~~~vLGGGiI~~t~~ 388 (408)
||+||+++++||+++. +++.++|+|++||+||||||+||||++| +|||||||+.+.+
T Consensus 320 vkiRyr~~~~p~~v~~~~~~~~~V~f~eP~~avaPGQ~aVfY~gd----~vLGGGiI~~~~p 377 (380)
T 2der_A 320 VKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGE----VCLGGGIIEQRLP 377 (380)
T ss_dssp EESSTTCCCEEEEEECCSSSCEEEEEEEEESCCCTTSEEEEEETT----EEEEEEEEEEEEE
T ss_pred EEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECC----EEEEEEEECCCCC
T ss_conf 998979889886999942998999979999873834379999799----9998899986568