HHsearch results for GI: 254780151 and protein with PDBid: 3a2k_A
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.63 E-value=3.5e-15 Score=127.59 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=123.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHH----CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 86338899996098579999999988----69849999987047876655557788189999999999980995898170
Q gi|254780151|r 17 NPKDMRVVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDY 92 (408)
Q Consensus 17 ~~k~~kV~va~SGGVDSsvaa~lL~~----~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~ 92 (408)
-+++.+|+||+|||+||++.+.+|++ .|++|+++|+. ++-.. ..+.++.+.++..|+.+|||+++..+
T Consensus 15 ~~~~~~v~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~hvn---h~lr~-----~~s~~~~~~~~~~~~~~~i~~~~~~~ 86 (464)
T 3a2k_A 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD---HMFRG-----RESEEEMEFVKRFCVERRILCETAQI 86 (464)
T ss_dssp SSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEE---CTTCT-----HHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCC-----CCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99839899998071999999999999889729859999977---98998-----66699999999999984991999998
Q ss_pred HHHHHHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCC
Q ss_conf 78866322441126787088612000015411058888874016876452253110254126787731688531578787
Q gi|254780151|r 93 EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172 (408)
Q Consensus 93 ~~~f~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KD 172 (408)
. +..+......|+|..| |..++..|.+.|++.|+++|||||.+.=.. + +--..|.||....=
T Consensus 87 ~-----------~~~~~~~~~~~~e~~a-R~~Ry~~~~~~~~~~~~~~i~~aHh~dD~~----E-T~l~~l~rg~~~~g- 148 (464)
T 3a2k_A 87 D-----------VPAFQRSAGLGAQEAA-RICRYRFFAELMEKHQAGYVAVGHHGDDQV----E-TILMRLVRGSTSKG- 148 (464)
T ss_dssp C-----------CHHHHTTTTCCSHHHH-HHHHHHHHHHHHHTTTCCEEECCCCHHHHH----H-HHHHHHHHCCCSSS-
T ss_pred E-----------EEHHHCCCCCCHHHHH-HHHHHHHHHCCCCCCCCCEEEEEEECCCHH----H-HHHHHHHHHCCCCC-
T ss_conf 6-----------0011025898989999-999987641233345631587542047589----9-99987543100123-
Q ss_pred CEEEEEEECC---HHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEEC
Q ss_conf 3189863020---22100334256899789899997412543551110230111
Q gi|254780151|r 173 QSYFLFATTQ---QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 (408)
Q Consensus 173 QSYfL~~l~~---~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi 223 (408)
|+.++. ..--.++-||=.++|.|++..|++.+|+..+.+-.++..|.
T Consensus 149 ----l~~~~~~~~~~~~~~iRPll~~~k~ei~~y~~~~~l~~~~D~sN~~~~~~ 198 (464)
T 3a2k_A 149 ----YAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYT 198 (464)
T ss_dssp ----TTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSH
T ss_pred ----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf ----34553213334565778999757999999999848986668997677025